RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4929
         (633 letters)



>d1vqou1 g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon
           Haloarcula marismortui [TaxId: 2238]}
          Length = 53

 Score = 64.7 bits (158), Expect = 4e-14
 Identities = 9/30 (30%), Positives = 10/30 (33%)

Query: 185 KIFRFCRSKCHKLFKRKKNPRKTAWTKAYR 214
               FC SKC       +  R   WT   R
Sbjct: 24  ATTHFCSSKCENNADLGREARNLEWTDTAR 53


>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 122

 Score = 49.0 bits (116), Expect = 8e-08
 Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 5/74 (6%)

Query: 11 MFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLA-TRSDEIELPDVEP 69
          + + +IL DV  +V R    ++  AH+ VL   S +F ++F   L    S     P++ P
Sbjct: 19 LRSRDILTDVVIVVSR----EQFRAHKTVLMACSGLFYSIFTDQLKRNLSVINLDPEINP 74

Query: 70 AAFLALLRCSMTGK 83
            F  LL    T +
Sbjct: 75 EGFNILLDFMYTSR 88


>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF)
          protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
          Length = 121

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 8/78 (10%)

Query: 6  ERFAFMFNNEILCDVHFIVGRETELQRIPAHRFVLSVGSVVFDAMFNGTLATRSDEIELP 65
           +   M     LCDV  +V      Q   AHR VL+  S +F+ +F+      S    L 
Sbjct: 17 CKANQMRLAGTLCDVVIMVDS----QEFHAHRTVLACTSKMFEILFHR----NSQHYTLD 68

Query: 66 DVEPAAFLALLRCSMTGK 83
           + P  F  +L  + T  
Sbjct: 69 FLSPKTFQQILEYAYTAT 86


>d1jiwi_ b.61.2.1 (I:) Metalloprotease inhibitor {Pseudomonas
           aeruginosa, aprin [TaxId: 287]}
          Length = 105

 Score = 26.3 bits (58), Expect = 4.8
 Identities = 12/59 (20%), Positives = 16/59 (27%), Gaps = 11/59 (18%)

Query: 389 RCRSRLSANPGIEPSAWQANLTYHCAPARLFDEPQLAALCLDTIDKNTPDALA---ADG 444
            C   L  +   E S +       C    L  EP+            TP  +A     G
Sbjct: 25  ICHLELRDSEVAEASGYDLGGDTACLTRWLPSEPRAWRP--------TPAGIALLERGG 75


>d1mhyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit
           {Methylosinus trichosporium [TaxId: 426]}
          Length = 383

 Score = 26.7 bits (59), Expect = 9.3
 Identities = 9/69 (13%), Positives = 18/69 (26%), Gaps = 7/69 (10%)

Query: 202 KNPRKTAWTKAYRKVR-GKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTK 260
           ++P +  W   Y K +  +                    D   W    E + K  +    
Sbjct: 92  RDPARR-WHHPYVKDKSEEARYTQRFLAAYSSEGSIRTIDPY-W--RDEILNK--YFGAL 145

Query: 261 RHNLYLAQR 269
            ++ Y    
Sbjct: 146 LYSEYGLFN 154


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.137    0.408 

Gapped
Lambda     K      H
   0.267   0.0760    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,369,588
Number of extensions: 113463
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 259
Number of HSP's successfully gapped: 9
Length of query: 633
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 542
Effective length of database: 1,158,166
Effective search space: 627725972
Effective search space used: 627725972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (25.3 bits)