Query psy4931
Match_columns 186
No_of_seqs 227 out of 455
Neff 3.7
Searched_HMMs 29240
Date Fri Aug 16 21:33:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4931.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4931hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3izc_Z 60S ribosomal protein R 100.0 3.2E-49 1.1E-53 321.0 -0.2 121 1-124 1-121 (155)
2 4a17_T RPL24, 60S ribosomal pr 100.0 3.3E-46 1.1E-50 304.0 5.1 98 1-107 3-100 (158)
3 2zkr_u 60S ribosomal protein L 100.0 3.7E-46 1.3E-50 303.5 2.8 97 1-107 1-98 (157)
4 3iz5_Z 60S ribosomal protein L 100.0 4.4E-46 1.5E-50 304.3 0.9 99 1-107 3-101 (162)
5 1vq8_U 50S ribosomal protein L 100.0 3.3E-39 1.1E-43 230.6 2.8 65 1-65 1-65 (66)
6 3j21_V 50S ribosomal protein L 100.0 7.2E-36 2.5E-40 213.3 5.6 59 1-59 2-60 (66)
7 3jyw_S 60S ribosomal protein L 100.0 2.5E-30 8.6E-35 172.7 2.5 45 8-52 1-45 (45)
8 2hpu_A NOSL protein; alpha bet 95.4 0.0058 2E-07 49.6 2.1 41 3-43 18-61 (175)
9 1mty_D Methane monooxygenase h 91.6 0.12 4E-06 48.4 3.7 54 4-63 402-464 (512)
10 3u52_A Phenol hydroxylase comp 89.6 0.2 6.7E-06 46.8 3.2 56 5-62 398-462 (511)
11 2l8e_A Polyhomeotic-like prote 89.0 0.11 3.7E-06 34.7 0.7 31 3-40 18-48 (49)
12 3ge3_A Toluene-4-monooxygenase 85.1 0.64 2.2E-05 43.4 3.8 55 5-61 396-458 (500)
13 1zfo_A LAsp-1; LIM domain, zin 83.1 0.3 1E-05 28.9 0.5 24 3-29 3-26 (31)
14 2inc_A Toluene, O-xylene monoo 71.5 2.5 8.6E-05 39.1 3.2 54 5-60 395-456 (491)
15 2iyb_E Testin, TESS, TES; LIM 70.0 1.6 5.6E-05 28.4 1.2 35 4-40 3-42 (65)
16 2ds5_A CLPX, ATP-dependent CLP 67.0 2.1 7.2E-05 28.5 1.3 10 3-12 11-20 (51)
17 1ovx_A ATP-dependent CLP prote 65.7 2 6.7E-05 30.4 1.0 10 3-12 18-27 (67)
18 2iyb_E Testin, TESS, TES; LIM 64.4 4.2 0.00014 26.3 2.4 31 5-40 34-64 (65)
19 1a7i_A QCRP2 (LIM1); LIM domai 60.7 6.2 0.00021 26.4 2.8 35 3-40 7-44 (81)
20 2egq_A FHL1 protein; LIM domai 59.5 7.2 0.00024 25.7 2.9 38 3-40 15-56 (77)
21 1x68_A FHL5 protein; four-and- 58.9 6.8 0.00023 25.9 2.7 37 3-40 5-45 (76)
22 2das_A Zinc finger MYM-type pr 57.1 7.9 0.00027 27.1 2.8 38 5-44 22-59 (62)
23 2cu8_A Cysteine-rich protein 2 55.9 8.2 0.00028 25.5 2.7 35 3-40 9-46 (76)
24 2ww6_A Fibritin, T4 fibritin; 55.7 5.9 0.0002 23.7 1.7 15 13-27 5-19 (27)
25 3f6q_B LIM and senescent cell 53.5 10 0.00036 24.1 2.8 25 4-30 12-36 (72)
26 1wyh_A SLIM 2, skeletal muscle 52.8 5.8 0.0002 25.7 1.5 36 3-40 5-43 (72)
27 1x63_A Skeletal muscle LIM-pro 49.5 11 0.00039 24.9 2.6 36 3-40 15-53 (82)
28 1l8d_A DNA double-strand break 49.4 2.8 9.7E-05 30.2 -0.5 12 4-15 48-59 (112)
29 1iml_A CRIP, cysteine rich int 47.3 11 0.00038 24.8 2.2 33 5-40 2-37 (76)
30 2d8y_A Eplin protein; LIM doma 45.7 9.3 0.00032 26.2 1.7 36 3-41 15-53 (91)
31 2dj7_A Actin-binding LIM prote 42.0 13 0.00043 25.2 1.9 25 3-30 15-39 (80)
32 4a17_Y RPL37A, 60S ribosomal p 41.7 5.8 0.0002 30.2 0.2 29 4-41 37-65 (103)
33 1nyp_A Pinch protein; LIM doma 41.0 13 0.00046 23.6 1.8 24 3-30 5-28 (66)
34 2ntk_A IMP cyclohydrolase; alp 40.8 14 0.00048 31.4 2.4 29 10-38 18-48 (222)
35 2cup_A Skeletal muscle LIM-pro 40.6 19 0.00065 24.7 2.7 25 4-30 67-91 (101)
36 1x61_A Thyroid receptor intera 38.7 16 0.00053 23.6 1.9 25 3-29 5-29 (72)
37 1x4l_A Skeletal muscle LIM-pro 37.5 25 0.00084 22.7 2.7 37 3-39 5-44 (72)
38 2l3k_A Rhombotin-2, linker, LI 36.9 6.6 0.00022 28.6 -0.2 34 4-39 9-45 (123)
39 2cuq_A Four and A half LIM dom 36.4 16 0.00055 24.1 1.7 33 4-40 16-51 (80)
40 1x64_A Alpha-actinin-2 associa 36.3 15 0.00053 25.0 1.6 34 3-40 25-61 (89)
41 1g47_A Pinch protein; LIM doma 36.3 18 0.00062 23.6 1.9 36 3-40 11-49 (77)
42 1avy_A Fibritin, gpwac M; bact 36.0 16 0.00056 26.3 1.7 16 12-27 48-63 (74)
43 1x62_A C-terminal LIM domain p 34.8 18 0.00063 24.0 1.8 34 2-39 14-50 (79)
44 3o5v_A X-Pro dipeptidase; crea 33.6 23 0.00079 25.3 2.3 32 5-36 28-61 (132)
45 3ooo_A Proline dipeptidase; st 32.9 24 0.00083 25.1 2.3 32 5-36 28-61 (132)
46 2l4z_A DNA endonuclease RBBP8, 32.8 19 0.00064 26.6 1.7 35 3-40 61-98 (123)
47 2co8_A NEDD9 interacting prote 32.7 18 0.0006 24.5 1.4 35 3-40 15-52 (82)
48 1vq8_Z 50S ribosomal protein L 32.6 16 0.00054 26.3 1.2 20 3-22 27-48 (83)
49 3tgv_A Heme-binding protein HU 31.6 19 0.00067 26.9 1.6 32 16-47 30-61 (148)
50 2xqn_T Testin, TESS; metal-bin 31.3 19 0.00064 25.8 1.5 35 4-40 64-103 (126)
51 1x4k_A Skeletal muscle LIM-pro 30.0 37 0.0013 21.7 2.6 26 3-30 5-30 (72)
52 1wig_A KIAA1808 protein; LIM d 29.9 16 0.00054 24.2 0.8 23 4-30 6-28 (73)
53 3pn9_A Proline dipeptidase; st 29.2 29 0.001 24.5 2.2 32 5-36 30-63 (138)
54 2ehe_A Four and A half LIM dom 29.2 17 0.0006 24.1 0.9 25 4-30 16-40 (82)
55 1v6g_A Actin binding LIM prote 28.7 25 0.00085 23.3 1.6 33 4-40 16-51 (81)
56 2dlo_A Thyroid receptor-intera 28.7 25 0.00086 23.3 1.7 34 3-40 15-51 (81)
57 2xjy_A Rhombotin-2; oncoprotei 27.8 39 0.0013 24.2 2.7 33 5-39 68-103 (131)
58 2d8z_A Four and A half LIM dom 27.4 34 0.0012 21.8 2.1 34 3-40 5-41 (70)
59 1lv3_A Hypothetical protein YA 26.9 23 0.00077 25.0 1.2 30 3-39 9-38 (68)
60 1x3h_A Leupaxin; paxillin fami 25.8 32 0.0011 22.6 1.7 33 4-40 16-51 (80)
61 2d8x_A Protein pinch; LIM doma 25.8 39 0.0013 21.6 2.2 21 6-29 34-54 (70)
62 1nui_A DNA primase/helicase; z 25.5 29 0.00098 28.0 1.7 30 2-39 13-42 (255)
63 2cur_A Skeletal muscle LIM-pro 25.4 41 0.0014 21.4 2.2 11 4-14 6-16 (69)
64 3ga8_A HTH-type transcriptiona 25.3 33 0.0011 23.4 1.8 29 3-31 2-31 (78)
65 1j2o_A FLIN2, fusion of rhombo 24.1 45 0.0015 23.7 2.4 35 3-40 3-40 (114)
66 4ayb_P DNA-directed RNA polyme 23.2 25 0.00084 23.5 0.7 11 4-14 24-34 (48)
67 1gh9_A 8.3 kDa protein (gene M 21.7 22 0.00075 24.9 0.3 22 2-24 20-41 (71)
68 1b8t_A Protein (CRP1); LIM dom 21.2 39 0.0013 26.1 1.7 24 4-30 8-31 (192)
69 3i7m_A XAA-Pro dipeptidase; st 21.0 51 0.0017 23.6 2.2 33 5-37 29-63 (140)
70 2wjy_A Regulator of nonsense t 20.1 44 0.0015 32.1 2.1 27 6-36 9-35 (800)
71 2jw6_A Deformed epidermal auto 20.1 56 0.0019 20.2 2.0 32 3-40 9-40 (52)
No 1
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z 3o58_V 3o5h_V 3u5e_W 3u5i_W 4b6a_W 1s1i_S 2x7n_D
Probab=100.00 E-value=3.2e-49 Score=320.99 Aligned_cols=121 Identities=36% Similarity=0.599 Sum_probs=71.1
Q ss_pred CceeecccCCCCccCCccceEEeeCCceeEEechhHHHhhhcccCCccchhhHHHHHHhCCcccccchhhhhhhhCCccc
Q psy4931 1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLK 80 (186)
Q Consensus 1 Mr~e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~KrnPRKl~WT~~~Rr~~kKe~~~d~~~efekRRn~~vK 80 (186)
|++++|+|||++||||||+|||+|||+||+||||||++||++++|||+|+||.+||++|+|++++|++ ++|+|+||+
T Consensus 1 Mk~~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRr~~kK~~~~e~~---kkR~~~~vK 77 (155)
T 3izc_Z 1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHKKGITEEVA---KKRSRKTVK 77 (155)
T ss_dssp CCCEECTTTCSEECTTCCEEEECTTCCEEEESSHHHHHHHHHTCCHHHHSSSCSCCCCCCCCCCCSCC---CCCCC----
T ss_pred CceeEecCcCCcccCCCCeEEEecCCCEEEEEcHHHHHHHHhccCcccchhHHHHHHHhCCchhhHHH---HHHhcCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999975 688899999
Q ss_pred chhhHHHHhHHHHHhHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy4931 81 YDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVETARDI 124 (186)
Q Consensus 81 y~R~lv~~tl~amkrve~Ik~kR~~~~~~~R~~~~k~~~~~~~~ 124 (186)
|||+|||+||++|+++..++..+..+++.++|+.+++.+++...
T Consensus 78 ~~R~ivg~sl~~Ik~~r~~k~e~r~a~r~~aik~~Kekkka~~~ 121 (155)
T 3izc_Z 78 AQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKKAEKA 121 (155)
T ss_dssp --------------------------------------------
T ss_pred chHHHHHhhHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998776554
No 2
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_T 4a1c_T 4a1e_T
Probab=100.00 E-value=3.3e-46 Score=304.04 Aligned_cols=98 Identities=31% Similarity=0.493 Sum_probs=59.7
Q ss_pred CceeecccCCCCccCCccceEEeeCCceeEEechhHHHhhhcccCCccchhhHHHHHHhCCcccccchhhhhhhhCCccc
Q psy4931 1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLK 80 (186)
Q Consensus 1 Mr~e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~KrnPRKl~WT~~~Rr~~kKe~~~d~~~efekRRn~~vK 80 (186)
|++++|+|||++||||||+|||||||+||+||||||++||++++|||+|+||.+||++|+|++++|++ ++|+|+||+
T Consensus 3 mk~~~CsFcg~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRr~~kK~~~~e~~---kkr~~r~vK 79 (158)
T 4a17_T 3 VRTGTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLSLRKVKAQKITWTIARRRLWKKVKATDIA---QKKKKRNVT 79 (158)
T ss_dssp CCCEECTTTCCEECTTCCEEEECTTSCEEEESCHHHHHHHHHTCCGGGSTTSHHHHHHHC--------------------
T ss_pred eEEEEecCcCCcccCCCCeEEEeeCCceEEEEcHHHHHHHHcccCcccchhHHHHHHHhCCcchHHHH---HHHhcCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999865 678899999
Q ss_pred chhhHHHHhHHHHHhHHHHHHHHHHHH
Q psy4931 81 YDREFWNKTVEAIKKVEHIKTKRQNLY 107 (186)
Q Consensus 81 y~R~lv~~tl~amkrve~Ik~kR~~~~ 107 (186)
|||+|||+|| ++|+++|++..
T Consensus 80 ~~R~ivg~sl------~~I~~kR~qkp 100 (158)
T 4a17_T 80 VARAIVGISL------EEINRRKNLDA 100 (158)
T ss_dssp ---------------------------
T ss_pred cchhhhhhhH------HHHHHHHccCH
Confidence 9999999998 77778887753
No 3
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=3.7e-46 Score=303.53 Aligned_cols=97 Identities=37% Similarity=0.723 Sum_probs=53.0
Q ss_pred CceeecccCCCCccCCccceEEeeCCceeEEechhHHHhhhcccCCccchhhHHHHHHhCCcccccchhhhhhhhC-Ccc
Q psy4931 1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRN-VPL 79 (186)
Q Consensus 1 Mr~e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~KrnPRKl~WT~~~Rr~~kKe~~~d~~~efekRRn-~~v 79 (186)
|++++|+|||++||||||+|||||||+||+||||||++||++++|||+|+||.+||++|||++++ +|+++|+ +||
T Consensus 1 Mk~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f~~krnPRKl~WT~~yRr~~kK~~~~----e~~KkR~r~~v 76 (157)
T 2zkr_u 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHKKGQSE----EIQKKRTRRAV 76 (157)
T ss_dssp ---CBCTTTCCBCCTTCCEEEECTTSCEEEESSHHHHHHHHTTCCTTTCTTCSTTC------------------------
T ss_pred CCeeeecCcCCcccCCCceEEEeeCCcEEEEecHHHHHHHHccCCcccchhHHHHHHHhcchHHH----HHHHHHhcCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999976 5788886 799
Q ss_pred cchhhHHHHhHHHHHhHHHHHHHHHHHH
Q psy4931 80 KYDREFWNKTVEAIKKVEHIKTKRQNLY 107 (186)
Q Consensus 80 Ky~R~lv~~tl~amkrve~Ik~kR~~~~ 107 (186)
+|||+|||+|| ++|+++|++..
T Consensus 77 K~~R~ivg~sl------~~I~~kR~qkp 98 (157)
T 2zkr_u 77 KFQRAITGASL------ADIMAKRNQKP 98 (157)
T ss_dssp ----------------------------
T ss_pred ceeHHHHHhhH------HHHHHHHccCH
Confidence 99999999998 77888888754
No 4
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Z
Probab=100.00 E-value=4.4e-46 Score=304.27 Aligned_cols=99 Identities=37% Similarity=0.727 Sum_probs=70.8
Q ss_pred CceeecccCCCCccCCccceEEeeCCceeEEechhHHHhhhcccCCccchhhHHHHHHhCCcccccchhhhhhhhCCccc
Q psy4931 1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLK 80 (186)
Q Consensus 1 Mr~e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~KrnPRKl~WT~~~Rr~~kKe~~~d~~~efekRRn~~vK 80 (186)
|++++|+|||++||||||+|||||||+||+||||||++||++++|||+|+||.+||++|+|++++|++ ++++||.|++
T Consensus 3 mk~e~CsFcG~~IyPG~G~~fVr~Dgkvf~FcssKC~k~f~~krnPRKl~WT~~yRr~~kK~~~~e~~--~krrR~~~~k 80 (162)
T 3iz5_Z 3 LKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHKKDIHAEAV--KKRRRTTKKP 80 (162)
T ss_dssp SSCEECTTTCSEECSSCSEEEECTTSCEEEECSHHHHHHHHHTCCGGGTSSSCSCCCCCCCCCCSSSS--SSSCC-----
T ss_pred eEEEEecCcCCcccCCCCeEEEecCCCEEEEECHHHHHHHHcccCcccchhHHHHHHHhccchhhHHH--HHHHhcCCcc
Confidence 79999999999999999999999999999999999999999999999999999999999999999987 5788889999
Q ss_pred chhhHHHHhHHHHHhHHHHHHHHHHHH
Q psy4931 81 YDREFWNKTVEAIKKVEHIKTKRQNLY 107 (186)
Q Consensus 81 y~R~lv~~tl~amkrve~Ik~kR~~~~ 107 (186)
|||+|||+|| ++|+++|++..
T Consensus 81 ~qRaivg~sL------~~I~~kRnqkp 101 (162)
T 3iz5_Z 81 YSRSIVGATL------EVIQKKRSEKP 101 (162)
T ss_dssp ---------------------------
T ss_pred ccHHHHHhhH------HHHHHHHccCH
Confidence 9999999998 67777777644
No 5
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB: 1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V* 1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V* 1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Probab=100.00 E-value=3.3e-39 Score=230.61 Aligned_cols=65 Identities=31% Similarity=0.603 Sum_probs=53.0
Q ss_pred CceeecccCCCCccCCccceEEeeCCceeEEechhHHHhhhcccCCccchhhHHHHHHhCCcccc
Q psy4931 1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGKDLAV 65 (186)
Q Consensus 1 Mr~e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~KrnPRKl~WT~~~Rr~~kKe~~~ 65 (186)
|++++|+|||++||||||+|||||||+||+||||||++||+++||||+|+||++||++|||++++
T Consensus 1 mk~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKc~k~f~~krnPRkl~WT~~yRr~~kK~~~~ 65 (66)
T 1vq8_U 1 PRTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGEAEDE 65 (66)
T ss_dssp ---CBCTTTCCBCCSSCCEEEECTTSCEEEESCHHHHHHHHTTCCGGGCTTSTTTC---------
T ss_pred CCeeEecCcCCcccCCCceEEEeeCCcEEEEECHHHHHHHHcccCcccchhHHHHHHHhcccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999763
No 6
>3j21_V 50S ribosomal protein L24E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=7.2e-36 Score=213.34 Aligned_cols=59 Identities=41% Similarity=0.915 Sum_probs=57.6
Q ss_pred CceeecccCCCCccCCccceEEeeCCceeEEechhHHHhhhcccCCccchhhHHHHHHh
Q psy4931 1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVR 59 (186)
Q Consensus 1 Mr~e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~KrnPRKl~WT~~~Rr~~ 59 (186)
|++++|+|||++||||||+|||||||+||+||||||++||++|||||+|+||++||++.
T Consensus 2 ~~~~~C~Fcg~~IyPG~G~~~Vr~Dgkvf~FcssKC~k~f~~krnPRkl~WT~~yRk~~ 60 (66)
T 3j21_V 2 ARWNVCSYCGKPFEPGTGKMYVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEAR 60 (66)
T ss_dssp CCCCBCTTTCSBCCTTCCEEEECSSSCEEEESSHHHHHHHHTTCCTTTCSSSHHHHHHH
T ss_pred CceeEecCcCCcccCCCCeEEEecCCcEEEEECHHHHHHHHcCCCcccchHHHHHHHHh
Confidence 69999999999999999999999999999999999999999999999999999999975
No 7
>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=99.96 E-value=2.5e-30 Score=172.73 Aligned_cols=45 Identities=62% Similarity=1.114 Sum_probs=44.7
Q ss_pred cCCCCccCCccceEEeeCCceeEEechhHHHhhhcccCCccchhh
Q psy4931 8 FCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWT 52 (186)
Q Consensus 8 Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~KrnPRKl~WT 52 (186)
|||++||||||+|||||||+||+||||||++||++|||||+|+||
T Consensus 1 F~g~~IyPG~G~~~Vr~Dgkvf~FcssKc~k~~~~krnPrkl~WT 45 (45)
T 3jyw_S 1 FSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWT 45 (45)
T ss_dssp CCCCCCCTTCCCEECTTTSCCCCCCSHHHHGGGTSCCCTTTCCCC
T ss_pred CCCCcccCCCCeEEEecCCCEEEEECHHHHHHHHcCCCCccCccC
Confidence 899999999999999999999999999999999999999999998
No 8
>2hpu_A NOSL protein; alpha beta topology, metal transport; NMR {Achromobacter cycloclastes} SCOP: d.357.1.1 PDB: 2hq3_A
Probab=95.44 E-value=0.0058 Score=49.63 Aligned_cols=41 Identities=15% Similarity=0.265 Sum_probs=20.9
Q ss_pred eeecccCCCCc--cCCc-cceEEeeCCceeEEechhHHHhhhcc
Q psy4931 3 IETCYFCSSKI--YPGH-GIQFVRNDCKIFRFCRSKCHKLFKRK 43 (186)
Q Consensus 3 ~e~C~Fcg~~I--yPGh-G~~fVrnDgkvf~FcssKC~k~f~~K 43 (186)
...|.+||-.| |||. |.++..+.|++++||+-+|--+|.+.
T Consensus 18 ~~~C~~CgM~i~~~p~~~aqI~~~~~g~~~~F~s~~cm~~~~~~ 61 (175)
T 2hpu_A 18 ETLGHYCQMNLLEHPGPKAQIFLEGSPAPLFFSQVRDAIAYARG 61 (175)
T ss_dssp -----------------CEEEEETTCSSEEEESCHHHHHHHHTT
T ss_pred CceeCCCCcCcccCCCccEEEEECCCCcEEEECCHHHHHHHHhc
Confidence 46899999998 4676 66666665999999999998887654
No 9
>1mty_D Methane monooxygenase hydroxylase; dinuclear iron center monooxygenase; 1.70A {Methylococcus capsulatus str} SCOP: a.25.1.2 PDB: 1mmo_D 1xvb_A 1fyz_A 1fz0_A 1fz2_A 1fz3_A 1fz4_A 1fz5_A 1fz6_A 1fz7_A 1fz8_A 1fz9_A 1fzh_A 1fzi_A 1xmf_A 1xmg_A 1xmh_A 1xu3_A 1xu5_A 1fz1_A ...
Probab=91.65 E-value=0.12 Score=48.37 Aligned_cols=54 Identities=11% Similarity=0.207 Sum_probs=42.3
Q ss_pred eecccCCCCc----cCCccceEE-eeCCceeEEechhHHHhhhcccCCccc----hhhHHHHHHhCCcc
Q psy4931 4 ETCYFCSSKI----YPGHGIQFV-RNDCKIFRFCRSKCHKLFKRKKNPRKT----AWTKAYRKVRGKDL 63 (186)
Q Consensus 4 e~C~Fcg~~I----yPGhG~~fV-rnDgkvf~FcssKC~k~f~~KrnPRKl----~WT~~~Rr~~kKe~ 63 (186)
..|..|+-|+ .||....++ --+|+.|+|||.-|...|. .||-+. -|+ | .+|-++
T Consensus 402 ~~c~vC~~p~~~~~~~~~~~~~~~~y~G~~y~FCs~~Ck~~F~--~~PerY~~~~~~~---~-~~G~~l 464 (512)
T 1mty_D 402 YIDRVSQVPFCPSLAKGASTLRVHEYNGEMHTFSDQWGERMWL--AEPERYECQNIFE---Q-YEGREL 464 (512)
T ss_dssp EECTTTCCEECTTTCSSCCCCEEEEETTEEEEESSHHHHHHHH--HCGGGCCCCCHHH---H-STTCBH
T ss_pred eeCCCCCCcccccCCCCCCceeEEEECCEEEEecCHHHHHHHH--hChHHhhhcchHH---H-hcCCCH
Confidence 4799999984 457766665 6799999999999999997 788886 555 4 777543
No 10
>3u52_A Phenol hydroxylase component PHN; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_A 2inp_A
Probab=89.62 E-value=0.2 Score=46.77 Aligned_cols=56 Identities=21% Similarity=0.529 Sum_probs=44.7
Q ss_pred ecccCCCCc---cCCccc----eEEeeCCceeEEechhHHHhhhcccCCccc--hhhHHHHHHhCCc
Q psy4931 5 TCYFCSSKI---YPGHGI----QFVRNDCKIFRFCRSKCHKLFKRKKNPRKT--AWTKAYRKVRGKD 62 (186)
Q Consensus 5 ~C~Fcg~~I---yPGhG~----~fVrnDgkvf~FcssKC~k~f~~KrnPRKl--~WT~~~Rr~~kKe 62 (186)
.|.-|.-|| .||... ..+--+|+.|+|||.-|+..|. .||-+. .|+..-|-+.|--
T Consensus 398 ~C~~Cq~P~~~~~~~~~~~~~~~~~~~~G~~y~fCs~~C~~~f~--~~Pe~y~~~~~~~~~~~~g~~ 462 (511)
T 3u52_A 398 LCQVCQIPTIFTEKDAPTMLSHRQIEHEGERYHFCSDGCCDIFK--HEPEKYIQAWLPVHQIYQGNC 462 (511)
T ss_dssp BCTTTCSBSCCEETTEEEEECCEEEEETTEEEEESSHHHHHHHH--HCHHHHTTCCCHHHHHHTTCS
T ss_pred ccCCCCCcccccCCCCCCcccceeEEECCEEEEecChHHHHHHH--HCHHHHhcccChHHHHHccCC
Confidence 799999999 456533 3344589999999999999998 788776 6888888887763
No 11
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=88.97 E-value=0.11 Score=34.68 Aligned_cols=31 Identities=23% Similarity=0.491 Sum_probs=24.5
Q ss_pred eeecccCCCCccCCccceEEeeCCceeEEechhHHHhh
Q psy4931 3 IETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLF 40 (186)
Q Consensus 3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f 40 (186)
+.+|-+||.+|.|..+ ++.=+|||..|.+.|
T Consensus 18 ~~~C~~CG~~i~~~~~-------~r~krFCS~sCR~~y 48 (49)
T 2l8e_A 18 LLKCEYCGKYAPAEQF-------RGSKRFCSMTCAKRY 48 (49)
T ss_dssp EEECTTTCCEEEGGGC-------TTTSSSCSHHHHHHH
T ss_pred CCcChhccCccccccC-------CCCCccCCHHHHhhh
Confidence 3579999999999763 333469999999876
No 12
>3ge3_A Toluene-4-monooxygenase system protein A; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: a.25.1.2 PDB: 3ge8_A 3dhi_A* 3dhh_A* 3dhg_A* 3i5j_A 3i63_A 3q14_A 3q2a_A* 3q3m_A* 3q3n_A* 3q3o_A* 3rmk_A* 3ri7_A
Probab=85.10 E-value=0.64 Score=43.37 Aligned_cols=55 Identities=15% Similarity=0.366 Sum_probs=41.5
Q ss_pred ecccCCCCcc--CCcc----ceEEeeCCceeEEechhHHHhhhcccCCccch--hhHHHHHHhCC
Q psy4931 5 TCYFCSSKIY--PGHG----IQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTA--WTKAYRKVRGK 61 (186)
Q Consensus 5 ~C~Fcg~~Iy--PGhG----~~fVrnDgkvf~FcssKC~k~f~~KrnPRKl~--WT~~~Rr~~kK 61 (186)
.|.-|.-|+- ||+. ...+--+|+.|+|||.-|+..|. .||-+.. |+-.-|-..|-
T Consensus 396 ~C~~CqvP~~~~~~~~~~~~~~~~~y~G~~y~fCs~~C~~~f~--~~Pe~y~~~~~~~~~~~~g~ 458 (500)
T 3ge3_A 396 VCNMSQIPLVGVPGDDWNIEVFSLEHNGRLYHFGSEVDRWVFQ--QDPVQYQNHMNIVDRFLAGQ 458 (500)
T ss_dssp BCTTTCSBCBCBCGGGCBCCCEEEEETTEEEEESSHHHHHHHH--HCHHHHTTCCCHHHHHHTTC
T ss_pred cccccCCccccCCCCcccccceeeEECCEEEEecCHHHHHHHH--hChHHHhCCCCHHHHHHccC
Confidence 6999988885 4431 23344589999999999999998 7888773 77777766665
No 13
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=83.13 E-value=0.3 Score=28.91 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=18.1
Q ss_pred eeecccCCCCccCCccceEEeeCCcee
Q psy4931 3 IETCYFCSSKIYPGHGIQFVRNDCKIF 29 (186)
Q Consensus 3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf 29 (186)
.+.|..||..|||+.-.+ -+|++|
T Consensus 3 ~~~C~~C~k~Vy~~Ek~~---~~g~~~ 26 (31)
T 1zfo_A 3 NPNCARCGKIVYPTEKVN---CLDKFW 26 (31)
T ss_dssp CCBCSSSCSBCCGGGCCC---SSSSCC
T ss_pred CCcCCccCCEEecceeEE---ECCeEe
Confidence 468999999999995544 356655
No 14
>2inc_A Toluene, O-xylene monooxygenase oxygenase subunit; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: a.25.1.2 PDB: 2ind_A* 1t0q_A 1t0r_A 1t0s_A 3n1z_A* 3rnf_A* 3n20_A* 3rnc_A 3rn9_A* 3n1x_A 3rne_A 2rdb_A* 3n1y_A* 3rnb_A 3rng_A 3rna_A
Probab=71.48 E-value=2.5 Score=39.10 Aligned_cols=54 Identities=19% Similarity=0.441 Sum_probs=40.0
Q ss_pred ecccCCCCcc--CCccc---eEE-eeCCceeEEechhHHHhhhcccCCcc--chhhHHHHHHhC
Q psy4931 5 TCYFCSSKIY--PGHGI---QFV-RNDCKIFRFCRSKCHKLFKRKKNPRK--TAWTKAYRKVRG 60 (186)
Q Consensus 5 ~C~Fcg~~Iy--PGhG~---~fV-rnDgkvf~FcssKC~k~f~~KrnPRK--l~WT~~~Rr~~k 60 (186)
.|.-|.-||- ||.+. .++ --+|+.|+|||.-|...|. .||-+ -.|+..-|-.+|
T Consensus 395 ~c~~cq~P~~~~~~~~~~~~~~~~~~~G~~y~fcs~~c~~~F~--~~Pery~~~~~~~~~~~~g 456 (491)
T 2inc_A 395 ICNMCNLPIAHTPGNKWNVKDYQLEYEGRLYHFGSEADRWCFQ--IDPERYKNHTNLVDRFLKG 456 (491)
T ss_dssp BCTTTCSBCBCCCGGGCCCCCCCEEETTEEECCSSHHHHHHHH--HSGGGTTTCCCHHHHHHTT
T ss_pred ccCCCCCccCcCCCCccccceeEEEECCEEEeecCHHHHHHHH--HCHHHHhcccchhhHHhcC
Confidence 5888877543 56655 443 6699999999999999998 67766 357766666777
No 15
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=70.02 E-value=1.6 Score=28.40 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=26.2
Q ss_pred eecccCCCCccCCccceEEeeCCceeE-----EechhHHHhh
Q psy4931 4 ETCYFCSSKIYPGHGIQFVRNDCKIFR-----FCRSKCHKLF 40 (186)
Q Consensus 4 e~C~Fcg~~IyPGhG~~fVrnDgkvf~-----FcssKC~k~f 40 (186)
..|.-|+.+|+||- .+|.-.|+.|+ |.=+.|.+.+
T Consensus 3 ~~C~~C~~~I~~~~--~~v~a~~~~wH~~~~CF~C~~C~~~L 42 (65)
T 2iyb_E 3 VVCQGCHNAIDPEV--QRVTYNNFSWHASTECFLCSCCSKCL 42 (65)
T ss_dssp EECTTTSSEECTTS--CEEEETTEEEETTTTTSBCTTTCCBC
T ss_pred CCCcCCCCeeccCc--eEEEECCCccCCCCCCEECCCCCCcC
Confidence 57999999999862 25666788888 7777776654
No 16
>2ds5_A CLPX, ATP-dependent CLP protease ATP-binding subunit CLPX; treble cleft zinc finger, metal binding protein, protein binding; HET: PG4; 1.50A {Escherichia coli} SCOP: g.39.1.11 PDB: 2ds6_A 2ds8_A 2ds7_A
Probab=66.99 E-value=2.1 Score=28.53 Aligned_cols=10 Identities=30% Similarity=0.893 Sum_probs=7.7
Q ss_pred eeecccCCCC
Q psy4931 3 IETCYFCSSK 12 (186)
Q Consensus 3 ~e~C~Fcg~~ 12 (186)
...|||||.+
T Consensus 11 ~~~CSFCGk~ 20 (51)
T 2ds5_A 11 LLYCSFCGKS 20 (51)
T ss_dssp CCBCTTTCCB
T ss_pred CcEecCCCCC
Confidence 3579999974
No 17
>1ovx_A ATP-dependent CLP protease ATP-binding subunit CL; treble CLEF zinc finger, homodimer, metal binding protein; NMR {Escherichia coli} SCOP: g.39.1.11
Probab=65.72 E-value=2 Score=30.40 Aligned_cols=10 Identities=30% Similarity=0.893 Sum_probs=7.8
Q ss_pred eeecccCCCC
Q psy4931 3 IETCYFCSSK 12 (186)
Q Consensus 3 ~e~C~Fcg~~ 12 (186)
...|||||.+
T Consensus 18 ~~~CSFCGK~ 27 (67)
T 1ovx_A 18 LLYCSFCGKS 27 (67)
T ss_dssp CCCCTTTCCC
T ss_pred CcEecCCCCC
Confidence 4579999974
No 18
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=64.39 E-value=4.2 Score=26.35 Aligned_cols=31 Identities=29% Similarity=0.730 Sum_probs=23.0
Q ss_pred ecccCCCCccCCccceEEeeCCceeEEechhHHHhh
Q psy4931 5 TCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLF 40 (186)
Q Consensus 5 ~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f 40 (186)
.|+-|+.++- |..|+-.||++| |...|.+.+
T Consensus 34 ~C~~C~~~L~---~~~f~~~~g~~y--C~~~C~~k~ 64 (65)
T 2iyb_E 34 LCSCCSKCLI---GQKFMPVEGMVF--CSVECKKRM 64 (65)
T ss_dssp BCTTTCCBCT---TSCCEEETTEEE--SSHHHHHTT
T ss_pred ECCCCCCcCC---CCceEEECCEEe--cCHHHhhhh
Confidence 5888998884 555777889865 888887643
No 19
>1a7i_A QCRP2 (LIM1); LIM domain containing proteins, metal-binding protein, zinc finger; NMR {Coturnix japonica} SCOP: g.39.1.3 g.39.1.3 PDB: 2o10_A
Probab=60.74 E-value=6.2 Score=26.40 Aligned_cols=35 Identities=26% Similarity=0.468 Sum_probs=25.9
Q ss_pred eeecccCCCCccCCccceEEeeCCceeE---EechhHHHhh
Q psy4931 3 IETCYFCSSKIYPGHGIQFVRNDCKIFR---FCRSKCHKLF 40 (186)
Q Consensus 3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf~---FcssKC~k~f 40 (186)
...|.-|+.+|+||. +|.-.|+.|+ |.=+.|.+.+
T Consensus 7 ~~~C~~C~~~I~~~~---~~~a~~~~~H~~CF~C~~C~~~L 44 (81)
T 1a7i_A 7 GNKCGACGRTVYHAE---EVQCDGRSFHRCCFLCMVCRKNL 44 (81)
T ss_dssp -CBCSSSCCBCSSTT---EEEETTEEEESSSEECSSSCCEE
T ss_pred CCcCcCcCccccCce---eEEeCCcccccccCccCCCCCCC
Confidence 357999999999987 4677888886 5556676554
No 20
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=59.49 E-value=7.2 Score=25.67 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=26.4
Q ss_pred eeecccCCCCccCC-ccceEEeeCCceeE---EechhHHHhh
Q psy4931 3 IETCYFCSSKIYPG-HGIQFVRNDCKIFR---FCRSKCHKLF 40 (186)
Q Consensus 3 ~e~C~Fcg~~IyPG-hG~~fVrnDgkvf~---FcssKC~k~f 40 (186)
...|.-|+.+|+|+ .+..+|...|+.|+ |.=+.|.+.+
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~~~~~H~~CF~C~~C~~~L 56 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYEGQSWHDYCFHCKKCSVNL 56 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEETTEEEETTTCBCSSSCCBC
T ss_pred CccCcccCCcccCCCCCceeEEECcceeCcccCEehhcCCCC
Confidence 35799999999973 35678888888875 3334454443
No 21
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.89 E-value=6.8 Score=25.94 Aligned_cols=37 Identities=24% Similarity=0.418 Sum_probs=26.0
Q ss_pred eeecccCCCCccC-CccceEEeeCCceeE---EechhHHHhh
Q psy4931 3 IETCYFCSSKIYP-GHGIQFVRNDCKIFR---FCRSKCHKLF 40 (186)
Q Consensus 3 ~e~C~Fcg~~IyP-GhG~~fVrnDgkvf~---FcssKC~k~f 40 (186)
...|.-|+.+|+| | +..+|.-.|+.|+ |.=+.|.+.+
T Consensus 5 ~~~C~~C~~~I~~~g-~~~~~~a~~~~wH~~CF~C~~C~~~L 45 (76)
T 1x68_A 5 SSGCVACSKPISGLT-GAKFICFQDSQWHSECFNCGKCSVSL 45 (76)
T ss_dssp CCCCTTTCCCCCTTT-TCCEEEETTEEEEGGGCBCTTTCCBC
T ss_pred CCCCccCCCcccCCC-CceeEEECCcccCcccCChhhCCCcC
Confidence 4579999999997 4 3356777888887 5555565443
No 22
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=57.12 E-value=7.9 Score=27.12 Aligned_cols=38 Identities=21% Similarity=0.454 Sum_probs=33.8
Q ss_pred ecccCCCCccCCccceEEeeCCceeEEechhHHHhhhccc
Q psy4931 5 TCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKK 44 (186)
Q Consensus 5 ~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~~Kr 44 (186)
.|+-|-.+++- |..=+++.|.+-.||+.-|-..|..+.
T Consensus 22 ~C~~CKk~lqK--GQtAyqrkGs~~LFCS~~CL~~fs~~~ 59 (62)
T 2das_A 22 TCANCKKPLQK--GQTAYQRKGSAHLFCSTTCLSSFSSGP 59 (62)
T ss_dssp BCTTTCCBCCT--TSCCEECTTCCCEESSHHHHHHHCCCS
T ss_pred Chhhccchhhc--CceeeeecCchhheechHHHcccCCCC
Confidence 68889988886 888899999999999999999997664
No 23
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=55.91 E-value=8.2 Score=25.47 Aligned_cols=35 Identities=20% Similarity=0.366 Sum_probs=24.8
Q ss_pred eeecccCCCCccCCccceEEeeCCceeE---EechhHHHhh
Q psy4931 3 IETCYFCSSKIYPGHGIQFVRNDCKIFR---FCRSKCHKLF 40 (186)
Q Consensus 3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf~---FcssKC~k~f 40 (186)
...|.-|+.+|+||. +|.-.|++|+ |.=+.|.+.+
T Consensus 9 ~~~C~~C~~~I~~~~---~v~a~~~~~H~~CF~C~~C~~~L 46 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAE---KVSSLGKDWHKFCLKCERCSKTL 46 (76)
T ss_dssp CCBCTTTCCBCCTTT---EEEETTEEEETTTCBCSSSCCBC
T ss_pred CCCCcCCCCEeECCe---EEEECCeEeeCCCCCCCCCCCcc
Confidence 357999999999986 4566788877 5445565443
No 24
>2ww6_A Fibritin, T4 fibritin; D-amino acids, chaperone, viral protein; HET: DPN PG4; 0.98A {Enterobacteria phage T4} PDB: 1rfo_A 1u0p_A 2kbl_A 2ww7_A*
Probab=55.72 E-value=5.9 Score=23.67 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=12.8
Q ss_pred ccCCccceEEeeCCc
Q psy4931 13 IYPGHGIQFVRNDCK 27 (186)
Q Consensus 13 IyPGhG~~fVrnDgk 27 (186)
--|--|..|||.||.
T Consensus 5 eAP~Dg~~Yvr~dg~ 19 (27)
T 2ww6_A 5 EAPRDAQAYVRKFGE 19 (27)
T ss_dssp CCCSSSCEEEEETTE
T ss_pred cCCcCcceeEEEcCe
Confidence 357889999999996
No 25
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=53.47 E-value=10 Score=24.13 Aligned_cols=25 Identities=20% Similarity=0.543 Sum_probs=19.5
Q ss_pred eecccCCCCccCCccceEEeeCCceeE
Q psy4931 4 ETCYFCSSKIYPGHGIQFVRNDCKIFR 30 (186)
Q Consensus 4 e~C~Fcg~~IyPGhG~~fVrnDgkvf~ 30 (186)
..|..|+.+|+|+.. .|...|++|+
T Consensus 12 ~~C~~C~~~i~~~e~--~~~~~~~~~H 36 (72)
T 3f6q_B 12 ATCERCKGGFAPAEK--IVNSNGELYH 36 (72)
T ss_dssp CBCTTTCCBCCTTCE--EEEETTEEEE
T ss_pred ccchhcCccccCCce--EEEeCcCeeC
Confidence 579999999998753 4556788876
No 26
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=52.77 E-value=5.8 Score=25.70 Aligned_cols=36 Identities=19% Similarity=0.495 Sum_probs=24.9
Q ss_pred eeecccCCCCccCCccceEEeeCCceeE---EechhHHHhh
Q psy4931 3 IETCYFCSSKIYPGHGIQFVRNDCKIFR---FCRSKCHKLF 40 (186)
Q Consensus 3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf~---FcssKC~k~f 40 (186)
...|..|+.+|+|+. .+|.-.|++|+ |.=+.|.+.+
T Consensus 5 ~~~C~~C~~~I~~~~--~~~~a~~~~~H~~CF~C~~C~~~L 43 (72)
T 1wyh_A 5 SSGCSACGETVMPGS--RKLEYGGQTWHEHCFLCSGCEQPL 43 (72)
T ss_dssp CCBCSSSCCBCCSSS--CEECSTTCCEETTTCBCTTTCCBT
T ss_pred CCCCccCCCccccCc--cEEEECccccCcccCeECCCCCcC
Confidence 457999999999852 45666777776 5555565544
No 27
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.50 E-value=11 Score=24.93 Aligned_cols=36 Identities=25% Similarity=0.484 Sum_probs=24.6
Q ss_pred eeecccCCCCccCCccceEEeeCCceeE---EechhHHHhh
Q psy4931 3 IETCYFCSSKIYPGHGIQFVRNDCKIFR---FCRSKCHKLF 40 (186)
Q Consensus 3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf~---FcssKC~k~f 40 (186)
...|..|+.+|+||. .+|...|++|+ |.=+.|.+.+
T Consensus 15 ~~~C~~C~~~I~~~~--~~~~a~~~~~H~~CF~C~~C~~~L 53 (82)
T 1x63_A 15 SPKCKGCFKAIVAGD--QNVEYKGTVWHKDCFTCSNCKQVI 53 (82)
T ss_dssp SCBCSSSCCBCCSSS--CEEECSSCEEETTTCCCSSSCCCC
T ss_pred CCcCccCCcccccCc--eEEEECccccccccCchhhCCCcc
Confidence 357999999999863 45677788776 4444555443
No 28
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=49.40 E-value=2.8 Score=30.22 Aligned_cols=12 Identities=17% Similarity=0.581 Sum_probs=10.7
Q ss_pred eecccCCCCccC
Q psy4931 4 ETCYFCSSKIYP 15 (186)
Q Consensus 4 e~C~Fcg~~IyP 15 (186)
+.|.+||+++.|
T Consensus 48 ~~CPvCgs~l~~ 59 (112)
T 1l8d_A 48 GKCPVCGRELTD 59 (112)
T ss_dssp EECTTTCCEECH
T ss_pred CCCCCCCCcCCH
Confidence 579999999987
No 29
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=47.31 E-value=11 Score=24.80 Aligned_cols=33 Identities=24% Similarity=0.399 Sum_probs=21.4
Q ss_pred ecccCCCCccCCccceEEeeCCceeE---EechhHHHhh
Q psy4931 5 TCYFCSSKIYPGHGIQFVRNDCKIFR---FCRSKCHKLF 40 (186)
Q Consensus 5 ~C~Fcg~~IyPGhG~~fVrnDgkvf~---FcssKC~k~f 40 (186)
.|.-|+.+|+||. +|...|+.|+ |.=+.|.+.+
T Consensus 2 ~C~~C~~~I~~~~---~v~a~~~~~H~~CF~C~~C~~~L 37 (76)
T 1iml_A 2 KCPKCDKEVYFAE---RVTSLGKDWHRPCLKCEKCGKTL 37 (76)
T ss_dssp BCTTTSSBCCGGG---EEEETTEEEETTTCBCTTTCCBC
T ss_pred cCCCCCCEEECce---EEEECCccccCCCCCccccCccC
Confidence 5888888888875 3556677776 4444555443
No 30
>2d8y_A Eplin protein; LIM domain, epithelial protein LOST in neoplasm, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.73 E-value=9.3 Score=26.20 Aligned_cols=36 Identities=28% Similarity=0.573 Sum_probs=27.1
Q ss_pred eeecccCCCCccCCccceEEeeCCceeE---EechhHHHhhh
Q psy4931 3 IETCYFCSSKIYPGHGIQFVRNDCKIFR---FCRSKCHKLFK 41 (186)
Q Consensus 3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf~---FcssKC~k~f~ 41 (186)
...|..|+.+|+|+. +|.-.|++|+ |.=+.|.+.+.
T Consensus 15 ~~~C~~C~~~I~~~~---~v~a~~~~~H~~CF~C~~C~~~L~ 53 (91)
T 2d8y_A 15 RETCVECQKTVYPME---RLLANQQVFHISCFRCSYCNNKLS 53 (91)
T ss_dssp SCBCTTTCCBCCTTS---EEECSSSEEETTTCBCTTTCCBCC
T ss_pred CCcCccCCCccCCce---eEEECCCEECCCCCeeCCCCCCCC
Confidence 357999999999875 4678888887 66567765543
No 31
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=41.99 E-value=13 Score=25.25 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=18.4
Q ss_pred eeecccCCCCccCCccceEEeeCCceeE
Q psy4931 3 IETCYFCSSKIYPGHGIQFVRNDCKIFR 30 (186)
Q Consensus 3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf~ 30 (186)
...|.-|+.+|++|. +|...|+.|+
T Consensus 15 ~~~C~~C~~~I~~~~---~v~a~~~~wH 39 (80)
T 2dj7_A 15 PSHCAGCKEEIKHGQ---SLLALDKQWH 39 (80)
T ss_dssp CSCCTTTCCCCSSSC---CEEETTEEEC
T ss_pred CCCCcCcCCeeCCCe---EEEECCcccc
Confidence 457999999999985 3555677663
No 32
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=41.74 E-value=5.8 Score=30.16 Aligned_cols=29 Identities=24% Similarity=0.557 Sum_probs=22.5
Q ss_pred eecccCCCCccCCccceEEeeCCceeEEechhHHHhhh
Q psy4931 4 ETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFK 41 (186)
Q Consensus 4 e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f~ 41 (186)
.+|+|||.. -|++.+.-.|-|. +|.+-|-
T Consensus 37 y~CpfCgk~--------~vKR~a~GIW~C~-kCg~~~A 65 (103)
T 4a17_Y 37 YGCPFCGKV--------AVKRAAVGIWKCK-PCKKIIA 65 (103)
T ss_dssp EECTTTCCE--------EEEEEETTEEEET-TTTEEEE
T ss_pred CCCCCCCCc--------eeeecCcceEEcC-CCCCEEe
Confidence 589999865 2888888899995 6877663
No 33
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=40.97 E-value=13 Score=23.64 Aligned_cols=24 Identities=25% Similarity=0.420 Sum_probs=17.4
Q ss_pred eeecccCCCCccCCccceEEeeCCceeE
Q psy4931 3 IETCYFCSSKIYPGHGIQFVRNDCKIFR 30 (186)
Q Consensus 3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf~ 30 (186)
...|.-|+.+|+ |. +|.-.|+.|+
T Consensus 5 ~~~C~~C~~~I~-~~---~~~a~~~~~H 28 (66)
T 1nyp_A 5 VPICGACRRPIE-GR---VVNAMGKQWH 28 (66)
T ss_dssp CCEETTTTEECC-SC---EECCTTSBEE
T ss_pred CCCCcccCCEec-ce---EEEECccccc
Confidence 467888999888 42 5677777765
No 34
>2ntk_A IMP cyclohydrolase; alpha-beta-BETA-alpha NTN hydrolase fold; HET: IMP; 2.03A {Methanothermobacterthermautotrophicus} SCOP: d.153.2.1 PDB: 2ntl_A* 2ntm_A 1kuu_A
Probab=40.81 E-value=14 Score=31.38 Aligned_cols=29 Identities=21% Similarity=0.254 Sum_probs=23.5
Q ss_pred CCCccCCccceEEee-CCc-eeEEechhHHH
Q psy4931 10 SSKIYPGHGIQFVRN-DCK-IFRFCRSKCHK 38 (186)
Q Consensus 10 g~~IyPGhG~~fVrn-Dgk-vf~FcssKC~k 38 (186)
+...|||+|++.=+. ||+ +.+|.+|...-
T Consensus 18 ~~n~YpGRgIvvG~t~~G~~vaY~I~sRSfp 48 (222)
T 2ntk_A 18 GSHMYLGRILAVGRNSNGSFVAYRVSSRSFP 48 (222)
T ss_dssp TTCCCCCSEEEEEEETTEEEEEEEEECSSCC
T ss_pred hcCCCCCCeEEEeeCCCCCEEEEEEecCCCC
Confidence 467899999999999 998 55777776654
No 35
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=40.55 E-value=19 Score=24.69 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=18.5
Q ss_pred eecccCCCCccCCccceEEeeCCceeE
Q psy4931 4 ETCYFCSSKIYPGHGIQFVRNDCKIFR 30 (186)
Q Consensus 4 e~C~Fcg~~IyPGhG~~fVrnDgkvf~ 30 (186)
..|.-|+.+|.||. .+|+-.|++|+
T Consensus 67 ~~C~~C~~~I~~~~--~~~~a~~~~~H 91 (101)
T 2cup_A 67 PKCKGCFKAIVAGD--QNVEYKGTVWH 91 (101)
T ss_dssp CBCSSSCCBCCSSS--CEEESSSCEEE
T ss_pred CccccCCCccccCC--eEEEeCCcchH
Confidence 47899999999863 45666677765
No 36
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.74 E-value=16 Score=23.64 Aligned_cols=25 Identities=16% Similarity=0.129 Sum_probs=15.7
Q ss_pred eeecccCCCCccCCccceEEeeCCcee
Q psy4931 3 IETCYFCSSKIYPGHGIQFVRNDCKIF 29 (186)
Q Consensus 3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf 29 (186)
...|.-|+.+|+|+ ..+|.-.|+.|
T Consensus 5 ~~~C~~C~~~I~~~--~~~~~a~~~~~ 29 (72)
T 1x61_A 5 SSGCGGCGEDVVGD--GAGVVALDRVF 29 (72)
T ss_dssp CCCCSSSCSCCCSS--SCCEECSSSEE
T ss_pred CCCCccCCCccCCC--ceEEEECCCeE
Confidence 35788888888873 22344455555
No 37
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.51 E-value=25 Score=22.72 Aligned_cols=37 Identities=19% Similarity=0.361 Sum_probs=21.4
Q ss_pred eeecccCCCCccCCccceEEeeCCceeE---EechhHHHh
Q psy4931 3 IETCYFCSSKIYPGHGIQFVRNDCKIFR---FCRSKCHKL 39 (186)
Q Consensus 3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf~---FcssKC~k~ 39 (186)
...|.-|+.+|++.-+..+|.-.|+.|+ |.=+.|.+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF~C~~C~~~ 44 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCFNCKKCSLS 44 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTCBCSSSCCB
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccCEeccCCCc
Confidence 3568888888887223345555666665 333445443
No 38
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=36.90 E-value=6.6 Score=28.64 Aligned_cols=34 Identities=24% Similarity=0.442 Sum_probs=18.3
Q ss_pred eecccCCCCccCCccceEEeeCCceeE---EechhHHHh
Q psy4931 4 ETCYFCSSKIYPGHGIQFVRNDCKIFR---FCRSKCHKL 39 (186)
Q Consensus 4 e~C~Fcg~~IyPGhG~~fVrnDgkvf~---FcssKC~k~ 39 (186)
..|..|+.+|+|+- ..|+..|++|+ |.=+.|.+.
T Consensus 9 ~~C~~C~~~I~~~e--~~~~a~~~~~H~~CF~C~~C~~~ 45 (123)
T 2l3k_A 9 GLCASCDKRIRAYE--MTMRVKDKVYHLECFKCAACQKH 45 (123)
T ss_dssp CCCSSSSCCCCTTC--CCCCCSSCCCCTTTCBCTTTCCB
T ss_pred CcccCCCCeecCCc--eEEEECCcccccccCccccCCCC
Confidence 36888888888742 22334445444 433444433
No 39
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.43 E-value=16 Score=24.08 Aligned_cols=33 Identities=18% Similarity=0.360 Sum_probs=22.0
Q ss_pred eecccCCCCccCCccceEEeeCCceeE---EechhHHHhh
Q psy4931 4 ETCYFCSSKIYPGHGIQFVRNDCKIFR---FCRSKCHKLF 40 (186)
Q Consensus 4 e~C~Fcg~~IyPGhG~~fVrnDgkvf~---FcssKC~k~f 40 (186)
..|..|+.+|++. +|.-.|+.|+ |.=+.|.+.+
T Consensus 16 ~~C~~C~~~I~~~----~v~a~~~~~H~~CF~C~~C~~~L 51 (80)
T 2cuq_A 16 PRCARCSKTLTQG----GVTYRDQPWHRECLVCTGCQTPL 51 (80)
T ss_dssp CCCTTTCCCCCSC----CEESSSSEECTTTCBCSSSCCBC
T ss_pred CcCCCCCCEecCc----EEEECCchhhhhhCCcccCCCcC
Confidence 5789999999864 5777777775 3334454443
No 40
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=36.31 E-value=15 Score=24.95 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=22.0
Q ss_pred eeecccCCCCccCCccceEEeeCCceeE---EechhHHHhh
Q psy4931 3 IETCYFCSSKIYPGHGIQFVRNDCKIFR---FCRSKCHKLF 40 (186)
Q Consensus 3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf~---FcssKC~k~f 40 (186)
...|.-|+.+|++ .+|...|++|+ |.=..|.+.+
T Consensus 25 ~~~C~~C~~~I~~----~~~~a~~~~~H~~CF~C~~C~~~L 61 (89)
T 1x64_A 25 MPLCDKCGSGIVG----AVVKARDKYRHPECFVCADCNLNL 61 (89)
T ss_dssp CCBCTTTCCBCCS----CCEESSSCEECTTTCCCSSSCCCT
T ss_pred CCCcccCCCEecc----cEEEECCceECccCCEecCCCCCC
Confidence 3578889988884 45777777775 4334454443
No 41
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.28 E-value=18 Score=23.56 Aligned_cols=36 Identities=22% Similarity=0.599 Sum_probs=21.9
Q ss_pred eeecccCCCCccCCccceEEeeCCceeE---EechhHHHhh
Q psy4931 3 IETCYFCSSKIYPGHGIQFVRNDCKIFR---FCRSKCHKLF 40 (186)
Q Consensus 3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf~---FcssKC~k~f 40 (186)
...|..|+.+|+|+.- +|...|++|+ |.=+.|.+.+
T Consensus 11 ~~~C~~C~~~I~~~~~--~~~a~~~~~H~~CF~C~~C~~~L 49 (77)
T 1g47_A 11 SATCERCKGGFAPAEK--IVNSNGELYHEQCFVCAQCFQQF 49 (77)
T ss_dssp CCBCSSSCCBCCSTTT--CEEETTEEECTTTCCCTTTCCCC
T ss_pred CCCchhcCCccCCCce--EEEeCccEeccccCeECCCCCCC
Confidence 4579999999997532 3455666664 3334454443
No 42
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=35.95 E-value=16 Score=26.26 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=13.7
Q ss_pred CccCCccceEEeeCCc
Q psy4931 12 KIYPGHGIQFVRNDCK 27 (186)
Q Consensus 12 ~IyPGhG~~fVrnDgk 27 (186)
+.-|.-|..|||.||-
T Consensus 48 p~AP~DG~~YVrkDga 63 (74)
T 1avy_A 48 PEAPRDGQAYVRKDGE 63 (74)
T ss_dssp CCCCCSSCCEEEETTE
T ss_pred CCCCCCCceeEEecCe
Confidence 4568889999999996
No 43
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.80 E-value=18 Score=24.01 Aligned_cols=34 Identities=18% Similarity=0.379 Sum_probs=23.2
Q ss_pred ceeecccCCCCccCCccceEEeeCCceeE---EechhHHHh
Q psy4931 2 RIETCYFCSSKIYPGHGIQFVRNDCKIFR---FCRSKCHKL 39 (186)
Q Consensus 2 r~e~C~Fcg~~IyPGhG~~fVrnDgkvf~---FcssKC~k~ 39 (186)
....|.-|+.+|++ .+|.-.|++|+ |.=+.|.+.
T Consensus 14 ~~~~C~~C~~~I~~----~~~~a~~~~~H~~CF~C~~C~~~ 50 (79)
T 1x62_A 14 KLPMCDKCGTGIVG----VFVKLRDRHRHPECYVCTDCGTN 50 (79)
T ss_dssp CCCCCSSSCCCCCS----SCEECSSCEECTTTTSCSSSCCC
T ss_pred CCCccccCCCCccC----cEEEECcceeCcCcCeeCCCCCC
Confidence 34689999999994 26777888876 333445443
No 44
>3o5v_A X-Pro dipeptidase; creatinase, N-terminal, PSI, MCSG, structural G midwest center for structural genomics; 1.85A {Streptococcus pyogenes m1 gas}
Probab=33.58 E-value=23 Score=25.30 Aligned_cols=32 Identities=19% Similarity=0.103 Sum_probs=24.9
Q ss_pred ecccCCCCccCC--ccceEEeeCCceeEEechhH
Q psy4931 5 TCYFCSSKIYPG--HGIQFVRNDCKIFRFCRSKC 36 (186)
Q Consensus 5 ~C~Fcg~~IyPG--hG~~fVrnDgkvf~FcssKC 36 (186)
..||||+.-.|| .+.++|..||..+.|+.+--
T Consensus 28 i~YltGf~~~~~er~~~l~v~~~g~~~l~~~~~y 61 (132)
T 3o5v_A 28 INYLTGFFCDPHERQLFLFVYHDLAPVLFVPALE 61 (132)
T ss_dssp HHHHHSCCCCCTTSCCEEEEESSSCCEEEEEGGG
T ss_pred hhHhhCCCCCCccceEEEEEeCCCCEEEEeehhh
Confidence 357888887665 35789999999999998754
No 45
>3ooo_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; HET: MSE; 1.57A {Streptococcus agalactiae} PDB: 3peb_A*
Probab=32.86 E-value=24 Score=25.11 Aligned_cols=32 Identities=19% Similarity=0.127 Sum_probs=24.5
Q ss_pred ecccCCCCccCC--ccceEEeeCCceeEEechhH
Q psy4931 5 TCYFCSSKIYPG--HGIQFVRNDCKIFRFCRSKC 36 (186)
Q Consensus 5 ~C~Fcg~~IyPG--hG~~fVrnDgkvf~FcssKC 36 (186)
..||||+.-.|| .+.++|..||..+.|+.+--
T Consensus 28 i~YlTGf~~~~~er~~~l~v~~~g~~~l~~~~~y 61 (132)
T 3ooo_A 28 VNYLTGFFCDPHERQMFLFVYEDRDPILFVPALE 61 (132)
T ss_dssp HHHHHSCCCCCTTSCCEEEEESSSCCEEEEEGGG
T ss_pred HHHHhCCCCCCCcceEEEEEeCCCCEEEEEeccc
Confidence 358888886665 34789999999999987753
No 46
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=32.82 E-value=19 Score=26.60 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=25.8
Q ss_pred eeecccCCCCccCCccceEEeeCCceeE---EechhHHHhh
Q psy4931 3 IETCYFCSSKIYPGHGIQFVRNDCKIFR---FCRSKCHKLF 40 (186)
Q Consensus 3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf~---FcssKC~k~f 40 (186)
...|.-|+.+|+.+ .+|...|+.|+ |.=+.|.+.+
T Consensus 61 ~~~C~~C~~~I~~~---~~v~a~~~~wH~~CF~C~~C~~~L 98 (123)
T 2l4z_A 61 WKRCAGCGGKIADR---FLLYAMDSYWHSRCLKCSSCQAQL 98 (123)
T ss_dssp CSBBSSSSSBCCSS---SEEEETTEEEETTTSBCTTTCCBG
T ss_pred CCcCcCCCCCcCCc---EEEEeCCcEEcccccCcCcCCCcc
Confidence 35799999999943 45777888887 5556676655
No 47
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.65 E-value=18 Score=24.49 Aligned_cols=35 Identities=17% Similarity=0.449 Sum_probs=23.8
Q ss_pred eeecccCCCCccCCccceEEeeCCceeE---EechhHHHhh
Q psy4931 3 IETCYFCSSKIYPGHGIQFVRNDCKIFR---FCRSKCHKLF 40 (186)
Q Consensus 3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf~---FcssKC~k~f 40 (186)
...|.-|+.+||++.-++ -+|++|+ |.=+.|.+.+
T Consensus 15 ~~~C~~C~~~I~~~e~v~---a~~~~wH~~CF~C~~C~~~L 52 (82)
T 2co8_A 15 GDLCALCGEHLYVLERLC---VNGHFFHRSCFRCHTCEATL 52 (82)
T ss_dssp SCBCSSSCCBCCTTTBCC---BTTBCCBTTTCBCSSSCCBC
T ss_pred CCCCcccCCCcccceEEE---ECCCeeCCCcCEEcCCCCCc
Confidence 457999999999986543 5677775 4444555443
No 48
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=32.63 E-value=16 Score=26.29 Aligned_cols=20 Identities=25% Similarity=0.385 Sum_probs=13.3
Q ss_pred eeecccCCCCcc--CCccceEE
Q psy4931 3 IETCYFCSSKIY--PGHGIQFV 22 (186)
Q Consensus 3 ~e~C~Fcg~~Iy--PGhG~~fV 22 (186)
...|.|||...- |+.|+.--
T Consensus 27 ~y~Cp~CG~~~v~r~atGiW~C 48 (83)
T 1vq8_Z 27 DHACPNCGEDRVDRQGTGIWQC 48 (83)
T ss_dssp CEECSSSCCEEEEEEETTEEEE
T ss_pred cCcCCCCCCcceeccCCCeEEC
Confidence 357999998543 67665443
No 49
>3tgv_A Heme-binding protein HUTZ; 2.00A {Vibrio cholerae}
Probab=31.56 E-value=19 Score=26.88 Aligned_cols=32 Identities=19% Similarity=0.158 Sum_probs=26.4
Q ss_pred CccceEEeeCCceeEEechhHHHhhhcccCCc
Q psy4931 16 GHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPR 47 (186)
Q Consensus 16 GhG~~fVrnDgkvf~FcssKC~k~f~~KrnPR 47 (186)
+.-.-||..||.++.+++....+.-.+++|||
T Consensus 30 ~s~v~~~~~~~~~~~~~s~~~~~~~nl~~~pr 61 (148)
T 3tgv_A 30 VSYAPFVQNQEGYFVLISHIARHARNLEVNPQ 61 (148)
T ss_dssp EEEEEEEEETTEEEEEEETTSHHHHHHHHSCE
T ss_pred EEEEEEEEECCEEEEEECCccHHHHHHHhCCC
Confidence 34466899999988888888888888999997
No 50
>2xqn_T Testin, TESS; metal-binding protein, cytoskeleton, focal adhesion, acrosom; 2.62A {Homo sapiens}
Probab=31.31 E-value=19 Score=25.82 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=21.9
Q ss_pred eecccCCCCccCCccceEEeeCCceeE-----EechhHHHhh
Q psy4931 4 ETCYFCSSKIYPGHGIQFVRNDCKIFR-----FCRSKCHKLF 40 (186)
Q Consensus 4 e~C~Fcg~~IyPGhG~~fVrnDgkvf~-----FcssKC~k~f 40 (186)
..|.-|+.+|+|+. .+|.-.|++|+ |.=+.|.+.+
T Consensus 64 ~~C~~C~~~I~~~~--~~~~a~~~~~H~~~~CF~C~~C~~~l 103 (126)
T 2xqn_T 64 VVCQGCHNAIDPEV--QRVTYNNFSWHASTECFLCSCCSKCL 103 (126)
T ss_dssp CBCTTTCSBCCTTS--CEEEETTEEEESSTTTSBCTTTCCBC
T ss_pred ccCcccCCcCCcCc--eEEECCCCEeeCCCCCcCcCCCCCcc
Confidence 46888888888743 45566677776 4444454443
No 51
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.02 E-value=37 Score=21.71 Aligned_cols=26 Identities=19% Similarity=0.418 Sum_probs=17.4
Q ss_pred eeecccCCCCccCCccceEEeeCCceeE
Q psy4931 3 IETCYFCSSKIYPGHGIQFVRNDCKIFR 30 (186)
Q Consensus 3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf~ 30 (186)
...|..|+.+|+|+. .+|.-.|++|+
T Consensus 5 ~~~C~~C~~~I~~~~--~~~~a~~~~~H 30 (72)
T 1x4k_A 5 SSGCQECKKTIMPGT--RKMEYKGSSWH 30 (72)
T ss_dssp CCCBSSSCCCCCSSS--CEEEETTEEEE
T ss_pred CCCCccCCCcccCCc--eEEEECcCeec
Confidence 357899999999863 23455566655
No 52
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.94 E-value=16 Score=24.19 Aligned_cols=23 Identities=17% Similarity=0.328 Sum_probs=12.9
Q ss_pred eecccCCCCccCCccceEEeeCCceeE
Q psy4931 4 ETCYFCSSKIYPGHGIQFVRNDCKIFR 30 (186)
Q Consensus 4 e~C~Fcg~~IyPGhG~~fVrnDgkvf~ 30 (186)
..|.-|+.+|++ .+|.-.|+.|+
T Consensus 6 ~~C~~C~~~I~~----~~v~a~~~~wH 28 (73)
T 1wig_A 6 SGCDSCEKYITG----RVLEAGEKHYH 28 (73)
T ss_dssp CSCSSSCCCCSS----CCBCCSSCCBC
T ss_pred CCcccCCCEecC----eeEEeCCCCCC
Confidence 356667777763 34455555544
No 53
>3pn9_A Proline dipeptidase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, hydrolase; 2.00A {Streptococcus pneumoniae}
Probab=29.22 E-value=29 Score=24.54 Aligned_cols=32 Identities=19% Similarity=0.117 Sum_probs=23.7
Q ss_pred ecccCCCCccCCc--cceEEeeCCceeEEechhH
Q psy4931 5 TCYFCSSKIYPGH--GIQFVRNDCKIFRFCRSKC 36 (186)
Q Consensus 5 ~C~Fcg~~IyPGh--G~~fVrnDgkvf~FcssKC 36 (186)
.+||||+.-.||. +.++|..||..+.|+.+.-
T Consensus 30 i~yltGf~g~~~er~~~lli~~~g~~~l~~d~~~ 63 (138)
T 3pn9_A 30 INYLTGFYSDPHERQMFLFVLADQEPLLFVPALE 63 (138)
T ss_dssp HHHHHSCCCCCTTSCCEEEEESSSCCEEEEEGGG
T ss_pred eeeecCCCCCCccceEEEEEeCCCCEEEEEeccc
Confidence 4678887755543 5788999999999998743
No 54
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.21 E-value=17 Score=24.08 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=15.9
Q ss_pred eecccCCCCccCCccceEEeeCCceeE
Q psy4931 4 ETCYFCSSKIYPGHGIQFVRNDCKIFR 30 (186)
Q Consensus 4 e~C~Fcg~~IyPGhG~~fVrnDgkvf~ 30 (186)
..|.-|+.+|+|+ ..+|.-.|+.|+
T Consensus 16 ~~C~~C~~~I~~~--~~~~~a~~~~~H 40 (82)
T 2ehe_A 16 NTCAECQQLIGHD--SRELFYEDRHFH 40 (82)
T ss_dssp CBCTTTCCBCCSS--CCBCCCSSCCCB
T ss_pred CcCccCCCccccC--cEEEEeCCcccc
Confidence 4688999999973 233444555554
No 55
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.74 E-value=25 Score=23.30 Aligned_cols=33 Identities=27% Similarity=0.568 Sum_probs=23.8
Q ss_pred eecccCCCCccCCccceEEeeCCceeE---EechhHHHhh
Q psy4931 4 ETCYFCSSKIYPGHGIQFVRNDCKIFR---FCRSKCHKLF 40 (186)
Q Consensus 4 e~C~Fcg~~IyPGhG~~fVrnDgkvf~---FcssKC~k~f 40 (186)
..|..|+.+|+ | .+|...|++|+ |.=+.|.+.+
T Consensus 16 ~~C~~C~~~I~-~---~~v~a~~~~wH~~CF~C~~C~~~L 51 (81)
T 1v6g_A 16 TRCFSCDQFIE-G---EVVSALGKTYHPDCFVCAVCRLPF 51 (81)
T ss_dssp CBCTTTCCBCC-S---CCEEETTEEECTTTSSCSSSCCCC
T ss_pred CcCccccCEec-c---ceEEECCceeCccCCccccCCCCC
Confidence 47999999999 3 46777888887 5555565543
No 56
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.72 E-value=25 Score=23.29 Aligned_cols=34 Identities=29% Similarity=0.610 Sum_probs=23.6
Q ss_pred eeecccCCCCccCCccceEEeeCCceeE---EechhHHHhh
Q psy4931 3 IETCYFCSSKIYPGHGIQFVRNDCKIFR---FCRSKCHKLF 40 (186)
Q Consensus 3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf~---FcssKC~k~f 40 (186)
...|..|+.+|+ | .+|.-.|++|+ |.=+.|.+.+
T Consensus 15 ~~~C~~C~~~I~-~---~~~~a~~~~~H~~CF~C~~C~~~L 51 (81)
T 2dlo_A 15 LEKCATCSQPIL-D---RILRAMGKAYHPGCFTCVVCHRGL 51 (81)
T ss_dssp CCBCTTTCCBCC-S---CCEEETTEEECTTTCBCSSSCCBC
T ss_pred CCccccCCCeec-c---eeEEECCccccHHhcCcccCCCcc
Confidence 357899999998 3 36777888887 5445565544
No 57
>2xjy_A Rhombotin-2; oncoprotein, T-cell leukemia, proto-oncogene, transcription, developmental protein; 2.40A {Homo sapiens} PDB: 2xjz_A
Probab=27.78 E-value=39 Score=24.16 Aligned_cols=33 Identities=24% Similarity=0.463 Sum_probs=22.1
Q ss_pred ecccCCCCccCCccceEEeeCCceeE---EechhHHHh
Q psy4931 5 TCYFCSSKIYPGHGIQFVRNDCKIFR---FCRSKCHKL 39 (186)
Q Consensus 5 ~C~Fcg~~IyPGhG~~fVrnDgkvf~---FcssKC~k~ 39 (186)
.|..|+.+|+|+. ++|+-.|++|+ |.=+.|.+.
T Consensus 68 ~C~~C~~~I~~~e--~~~~a~~~~~H~~CF~C~~C~~~ 103 (131)
T 2xjy_A 68 LCASCDKRIRAYE--MTMRVKDKVYHLECFKCAACQKH 103 (131)
T ss_dssp ECTTTCCEECTTS--EEEEETTEEEEGGGCBCTTTCCB
T ss_pred ChhhcCCccCccc--eeEeeCCceECccCcccCCCCCC
Confidence 7999999998753 55666777776 333444443
No 58
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.41 E-value=34 Score=21.80 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=22.2
Q ss_pred eeecccCCCCccCCccceEEeeCCceeE---EechhHHHhh
Q psy4931 3 IETCYFCSSKIYPGHGIQFVRNDCKIFR---FCRSKCHKLF 40 (186)
Q Consensus 3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf~---FcssKC~k~f 40 (186)
...|.-|+.+|++. +|.-.|++|+ |.=+.|.+.+
T Consensus 5 ~~~C~~C~~~I~~~----~~~a~~~~~H~~CF~C~~C~~~L 41 (70)
T 2d8z_A 5 SSGCVQCKKPITTG----GVTYREQPWHKECFVCTACRKQL 41 (70)
T ss_dssp CCBCSSSCCBCCSS----EEESSSSEEETTTSBCSSSCCBC
T ss_pred CCCCcccCCeeccc----eEEECccccCCCCCccCCCCCcC
Confidence 35788899999853 3667777776 4444555543
No 59
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=26.92 E-value=23 Score=24.98 Aligned_cols=30 Identities=20% Similarity=0.519 Sum_probs=22.1
Q ss_pred eeecccCCCCccCCccceEEeeCCceeEEechhHHHh
Q psy4931 3 IETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKL 39 (186)
Q Consensus 3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~ 39 (186)
+..|.-||.++..+.. ..-.-|||.+|...
T Consensus 9 ~~~CP~Cgkp~~W~~~-------~~~rPFCSeRCr~i 38 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGEI-------SPFRPFCSKRCQLI 38 (68)
T ss_dssp EEECTTTCCEEECSSS-------SSCCSSSSHHHHHH
T ss_pred cCcCCCCCCccccccc-------CCCCcccCHHHHhh
Confidence 4679999998875433 34457999999764
No 60
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.81 E-value=32 Score=22.58 Aligned_cols=33 Identities=15% Similarity=0.470 Sum_probs=22.1
Q ss_pred eecccCCCCccCCccceEEeeCCceeE---EechhHHHhh
Q psy4931 4 ETCYFCSSKIYPGHGIQFVRNDCKIFR---FCRSKCHKLF 40 (186)
Q Consensus 4 e~C~Fcg~~IyPGhG~~fVrnDgkvf~---FcssKC~k~f 40 (186)
..|.-|+.+|++ .+|...|++|+ |.=+.|.+.+
T Consensus 16 ~~C~~C~~~I~~----~~v~a~~~~~H~~CF~C~~C~~~L 51 (80)
T 1x3h_A 16 PKCGGCNRPVLE----NYLSAMDTVWHPECFVCGDCFTSF 51 (80)
T ss_dssp CBCTTTCCBCCS----SCEEETTEEECTTTCBCSSSCCBS
T ss_pred CccccCCCeecc----eeEEECCCeEecCcCChhhCCCCC
Confidence 578899999985 35677777776 4444554443
No 61
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.80 E-value=39 Score=21.60 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=10.6
Q ss_pred cccCCCCccCCccceEEeeCCcee
Q psy4931 6 CYFCSSKIYPGHGIQFVRNDCKIF 29 (186)
Q Consensus 6 C~Fcg~~IyPGhG~~fVrnDgkvf 29 (186)
|+-|+.++-.+ -|+-.||++|
T Consensus 34 C~~C~~~L~~~---~f~~~~g~~y 54 (70)
T 2d8x_A 34 CDLCQEVLADI---GFVKNAGRHL 54 (70)
T ss_dssp CSSSCCBCSSS---CCEEETTEEE
T ss_pred eCCCCCcCCCC---ccEeECCeEE
Confidence 45555555433 2555666654
No 62
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=25.49 E-value=29 Score=28.03 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=20.3
Q ss_pred ceeecccCCCCccCCccceEEeeCCceeEEechhHHHh
Q psy4931 2 RIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKL 39 (186)
Q Consensus 2 r~e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~ 39 (186)
+-..|..||.. . .+++-.|| .++|+ .|...
T Consensus 13 ~~~~CP~Cg~~---d--~~~~~~dg--~~~C~-~Cg~~ 42 (255)
T 1nui_A 13 YHIPCDNCGSS---D--GNSLFSDG--HTFCY-VCEKW 42 (255)
T ss_dssp EEECCSSSCCS---S--CEEEETTS--CEEET-TTCCE
T ss_pred cCCcCCCCCCC---C--CceEeCCC--Ceecc-cCCCc
Confidence 34579999875 2 34444788 38999 68743
No 63
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.44 E-value=41 Score=21.44 Aligned_cols=11 Identities=27% Similarity=0.618 Sum_probs=5.9
Q ss_pred eecccCCCCcc
Q psy4931 4 ETCYFCSSKIY 14 (186)
Q Consensus 4 e~C~Fcg~~Iy 14 (186)
..|..|+.+|+
T Consensus 6 ~~C~~C~~~I~ 16 (69)
T 2cur_A 6 SGCVKCNKAIT 16 (69)
T ss_dssp CCCSSSCCCCC
T ss_pred CCCcccCCEeC
Confidence 34555555555
No 64
>3ga8_A HTH-type transcriptional regulator MQSA (YGIT/B30; helix-turn-helix, Zn-binding protein, DNA-binding, transcrip transcription regulation; HET: PE4; 1.70A {Escherichia coli k-12} PDB: 3hi2_A
Probab=25.32 E-value=33 Score=23.35 Aligned_cols=29 Identities=10% Similarity=0.027 Sum_probs=21.2
Q ss_pred eeecccCCCC-ccCCccceEEeeCCceeEE
Q psy4931 3 IETCYFCSSK-IYPGHGIQFVRNDCKIFRF 31 (186)
Q Consensus 3 ~e~C~Fcg~~-IyPGhG~~fVrnDgkvf~F 31 (186)
+.+|.+||.. +.+|...+=+.-+|..+..
T Consensus 2 ~m~Cp~Cg~~~l~~~~~~~~~~~~G~~~~I 31 (78)
T 3ga8_A 2 HMKCPVCHQGEMVSGIKDIPYTFRGRKTVL 31 (78)
T ss_dssp -CBCTTTSSSBEEEEEEEEEEEETTEEEEE
T ss_pred ceECCCCCCCeeEeEEEEEEEEECCEEEEE
Confidence 3579999865 8889887777777776543
No 65
>1j2o_A FLIN2, fusion of rhombotin-2 and LIM domain-binding protein 1; LIM-interaction-domain (LID), metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.07 E-value=45 Score=23.72 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=22.8
Q ss_pred eeecccCCCCccCCccceEEeeCCceeE---EechhHHHhh
Q psy4931 3 IETCYFCSSKIYPGHGIQFVRNDCKIFR---FCRSKCHKLF 40 (186)
Q Consensus 3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf~---FcssKC~k~f 40 (186)
...|.-|+.+|+++ .+|+..|+.|+ |.=+.|.+.+
T Consensus 3 ~~~C~~C~~~I~~~---~~~~a~~~~wH~~CF~C~~C~~~L 40 (114)
T 1j2o_A 3 LLTCGGCQQNIGDR---YFLKAIDQYWHEDCLSCDLCGCRL 40 (114)
T ss_dssp CBCBSSSCSCBCSS---EEEECSSSEECTTTCCCSSSCSCC
T ss_pred CCCCcCCCCeeCCc---EEEEECchhHHHhcCcccccCCch
Confidence 35688888888843 45666777775 4445565544
No 66
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=23.18 E-value=25 Score=23.48 Aligned_cols=11 Identities=36% Similarity=0.845 Sum_probs=8.6
Q ss_pred eecccCCCCcc
Q psy4931 4 ETCYFCSSKIY 14 (186)
Q Consensus 4 e~C~Fcg~~Iy 14 (186)
-.|.+||+.|-
T Consensus 24 IrCpyCGyrii 34 (48)
T 4ayb_P 24 VRCPYCGYKII 34 (48)
T ss_dssp SCCTTTCCSCE
T ss_pred cccCccCcEEE
Confidence 36999999873
No 67
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=21.66 E-value=22 Score=24.95 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=17.0
Q ss_pred ceeecccCCCCccCCccceEEee
Q psy4931 2 RIETCYFCSSKIYPGHGIQFVRN 24 (186)
Q Consensus 2 r~e~C~Fcg~~IyPGhG~~fVrn 24 (186)
++..|. ||..|..+.-..|+.-
T Consensus 20 kT~~C~-CG~~~~~~k~rif~~~ 41 (71)
T 1gh9_A 20 KTRKCV-CGRTVNVKDRRIFGRA 41 (71)
T ss_dssp SEEEET-TTEEEECCSSSCBSCC
T ss_pred cEEECC-CCCeeeeceEEEEEec
Confidence 467787 8888888888888754
No 68
>1b8t_A Protein (CRP1); LIM domain, muscle differentiation, contractIle; NMR {Gallus gallus} SCOP: g.39.1.3 g.39.1.3 g.39.1.3 g.39.1.3 PDB: 1ibi_A 1qli_A 1cxx_A 1ctl_A 2o13_A
Probab=21.17 E-value=39 Score=26.14 Aligned_cols=24 Identities=21% Similarity=0.517 Sum_probs=15.0
Q ss_pred eecccCCCCccCCccceEEeeCCceeE
Q psy4931 4 ETCYFCSSKIYPGHGIQFVRNDCKIFR 30 (186)
Q Consensus 4 e~C~Fcg~~IyPGhG~~fVrnDgkvf~ 30 (186)
..|..|+.+|++|.- |.-.|+.|+
T Consensus 8 ~~C~~C~~~I~~~~~---v~a~g~~wH 31 (192)
T 1b8t_A 8 KKCGVCQKAVYFAEE---VQCEGSSFH 31 (192)
T ss_dssp EECTTTCCEECSSCC---EEETTEEEC
T ss_pred CcCccCCCeecceeE---EEeCCceec
Confidence 568888888887652 234555554
No 69
>3i7m_A XAA-Pro dipeptidase; structural genomics, APC64794.2, metall peptidase, creatinase/prolidase N-terminal domain, PSI-2; HET: MSE; 1.46A {Lactobacillus brevis}
Probab=20.99 E-value=51 Score=23.60 Aligned_cols=33 Identities=18% Similarity=-0.031 Sum_probs=24.5
Q ss_pred ecccCCCCccCC--ccceEEeeCCceeEEechhHH
Q psy4931 5 TCYFCSSKIYPG--HGIQFVRNDCKIFRFCRSKCH 37 (186)
Q Consensus 5 ~C~Fcg~~IyPG--hG~~fVrnDgkvf~FcssKC~ 37 (186)
..||||+.-.|| .+.++|..||..+.|+.+--.
T Consensus 29 i~YlTGf~~~~~er~~~llv~~~g~~~l~~~~~~~ 63 (140)
T 3i7m_A 29 IEYLTGFGSDPIERVLALVVFPDQDPFIFAPALEV 63 (140)
T ss_dssp HHHHHCCCCCCCSSCCEEEECSSSCCEEEEEGGGH
T ss_pred ceeecCCCCCCccceEEEEEeCCCCEEEEEecccH
Confidence 358888886665 247888899999999877543
No 70
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=20.13 E-value=44 Score=32.11 Aligned_cols=27 Identities=19% Similarity=0.370 Sum_probs=0.0
Q ss_pred cccCCCCccCCccceEEeeCCceeEEechhH
Q psy4931 6 CYFCSSKIYPGHGIQFVRNDCKIFRFCRSKC 36 (186)
Q Consensus 6 C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC 36 (186)
|.|||-.-+ .-.|+=..--.||||+++
T Consensus 9 c~~c~~~~~----~~~~~~~~~~~~fcn~~~ 35 (800)
T 2wjy_A 9 CSYCGIHDP----ACVVYCNTSKKWFCNGRG 35 (800)
T ss_dssp CTTTCCCCG----GGEEEETTTTEEEESCCT
T ss_pred ccccCCCCC----CeEEEcCCCCCccccCCC
No 71
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding domain, transcription, alternative splicing, DI mutation, DNA-binding; NMR {Homo sapiens} SCOP: g.85.1.1
Probab=20.06 E-value=56 Score=20.19 Aligned_cols=32 Identities=16% Similarity=0.484 Sum_probs=22.5
Q ss_pred eeecccCCCCccCCccceEEeeCCceeEEechhHHHhh
Q psy4931 3 IETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLF 40 (186)
Q Consensus 3 ~e~C~Fcg~~IyPGhG~~fVrnDgkvf~FcssKC~k~f 40 (186)
...|.+||.+ .++.-...+..+||+..|.+.-
T Consensus 9 ~~~C~~C~~~------~~~~C~~C~~~~YCs~~CQ~~~ 40 (52)
T 2jw6_A 9 EQSCVNCGRE------AMSECTGCHKVNYCSTFCQRKD 40 (52)
T ss_dssp --CCSSSSSS------CSEECTTTCSSEESSHHHHHHH
T ss_pred CCcCCCCCCC------CcCcCCCCCCEeecCHHHHHHH
Confidence 4579999874 2445556788899999998753
Done!