RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4931
(186 letters)
>3iz5_Z 60S ribosomal protein L24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins, ribosome; 5.50A {Triticum aestivum} PDB:
3izr_Z
Length = 162
Score = 135 bits (342), Expect = 3e-41
Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 2/152 (1%)
Query: 1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
++ E C F KIYPG GI+F+R D ++F F SKC + F + P K WT YRK
Sbjct: 3 LKTELCRFSGQKIYPGKGIRFIRADSQVFLFANSKCKRYFHNRLKPAKLTWTAMYRKQHK 62
Query: 61 KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
KD+ + + +RR Y R T+E I+K K + ++ LR+ +E
Sbjct: 63 KDIHAEAVKK--RRRTTKKPYSRSIVGATLEVIQKKRSEKPEVRDAAREAALREIKERIK 120
Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKRMVEAG 152
+ + + K + G
Sbjct: 121 KTKDEKKAKKAEVAKSQKTQSKGGATQRGAKG 152
>3izc_Z 60S ribosomal protein RPL24 (L24E); eukaryotic ribosome,homology
modeling,de novo modeling,ribos proteins,novel ribosomal
proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_Z
3o58_V 3o5h_V 3u5e_W 3u5i_W 1s1i_S 2x7n_D
Length = 155
Score = 127 bits (319), Expect = 6e-38
Identities = 43/147 (29%), Positives = 70/147 (47%), Gaps = 3/147 (2%)
Query: 1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
M++E F +KIYPG G FVR D KIFRF SK LFK++KNPR+ AWT +RK
Sbjct: 1 MKVEIDSFSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWTVLFRKHHK 60
Query: 61 KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
K + + + KR +K R +++ IK+ +K + + ++L+ +E +
Sbjct: 61 KGITEEVAK---KRSRKTVKAQRPITGASLDLIKERRSLKPEVRKANREEKLKANKEKKK 117
Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKR 147
A + ++ +
Sbjct: 118 AEKAARKAEKAKSAGTQSSKFSKQQAK 144
>2zkr_u 60S ribosomal protein L24; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris}
Length = 157
Score = 127 bits (319), Expect = 8e-38
Identities = 44/151 (29%), Positives = 69/151 (45%), Gaps = 3/151 (1%)
Query: 1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
M++E C F KIYPGHG ++ R D K+F+F +KC F K+NPR+ WT YR+
Sbjct: 1 MKVELCSFSGYKIYPGHGRRYARTDGKVFQFLNAKCESAFLSKRNPRQINWTVLYRRKHK 60
Query: 61 KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
K + + KR +K+ R ++ I + K + + Q +R A+E +
Sbjct: 61 KGQSEEIQ---KKRTRRAVKFQRAITGASLADIMAKRNQKPEVRKAQREQAIRAAKEAKK 117
Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKRMVEA 151
A+ A A K K + V+
Sbjct: 118 AKQASKKTAMAAAKAPTKAAPKQKIVKPVKV 148
>4a17_T RPL24, 60S ribosomal protein L21; eukaryotic ribosome, ribosome,
eukaryotic initiation factor 60S, translation, large
ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB:
4a1a_T 4a1c_T 4a1e_T
Length = 158
Score = 120 bits (302), Expect = 3e-35
Identities = 37/151 (24%), Positives = 65/151 (43%), Gaps = 3/151 (1%)
Query: 1 MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRG 60
+R TC FC +IYPG G +F+ D + F F K L RK +K WT A R++
Sbjct: 3 VRTGTCSFCEYRIYPGRGQRFIAKDGRGFFFLTKKAKCLSLRKVKAQKITWTIARRRLWK 62
Query: 61 KDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKAREVET 120
K A D + K++ + R ++E I + +++ + + +R+ ++ +
Sbjct: 63 KVKATDIA---QKKKKRNVTVARAIVGISLEEINRRKNLDASHKKAEAEKAVRELKQKKA 119
Query: 121 ARDIKAVQRDIAILNDPTEAIKAKKKRMVEA 151
K D A KA+ K+ +
Sbjct: 120 NDIEKKRADRKLQGKDVKAAKKAETKKTKQP 150
>1vq8_U 50S ribosomal protein L24E; ribosome 50S, protein-protein
complex, RNA-RNA complex, PROT complex, peptidyl
transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS;
2.20A {Haloarcula marismortui} SCOP: g.39.1.6 PDB:
1giy_R 1jj2_T 1k73_V* 1k8a_V* 1k9m_V* 1kc8_V* 1kd1_V*
1kqs_T* 1m1k_V* 1m90_V* 1ml5_r* 1n8r_V* 1nji_V* 1q7y_V*
1q81_V* 1q82_V* 1q86_V* 1qvf_T 1qvg_T 1s72_U* ...
Length = 66
Score = 106 bits (265), Expect = 7e-31
Identities = 20/62 (32%), Positives = 24/62 (38%)
Query: 2 RIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGK 61
R C +C + I PG G FV D FC SKC + R WT R G+
Sbjct: 2 RTRECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTARGEAGE 61
Query: 62 DL 63
Sbjct: 62 AE 63
>3jyw_S 60S ribosomal protein L24(A); eukaryotic ribosome, RACK1 protein,
flexible fitting; 8.90A {Thermomyces lanuginosus}
Length = 45
Score = 87.8 bits (218), Expect = 6e-24
Identities = 28/45 (62%), Positives = 32/45 (71%)
Query: 8 FCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWT 52
F +KIYPG G FVR D KIFRF SK LFK++KNPR+ AWT
Sbjct: 1 FSGAKIYPGRGTLFVRGDSKIFRFQNSKSASLFKQRKNPRRIAWT 45
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.11
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 34/61 (55%)
Query: 91 EAIKKVE-HIKTKRQNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEAIKAKKKRMV 149
+A+KK++ +K LY A D A P AIKA +
Sbjct: 20 QALKKLQASLK-----LY-------------ADD-SA----------PALAIKAT----M 46
Query: 150 E 150
E
Sbjct: 47 E 47
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.6 bits (71), Expect = 0.18
Identities = 23/141 (16%), Positives = 44/141 (31%), Gaps = 53/141 (37%)
Query: 39 LFKR-----KKNPRKTAWTKAYRKVRGKDLAVDPSFEFAKRRNVPLKYDREFWNKTVEAI 93
+F R PR Y + A++P V + +E ++ +
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMI-----AINPG-------RVAASFSQE----ALQYV 1829
Query: 94 KKVEHIKTKRQNLYLAQRLRKAREVETAR------------DIKAVQRDIAILNDPTEAI 141
VE + + L VE D++A+ +LN I
Sbjct: 1830 --VERVGKRTGWL-----------VEIVNYNVENQQYVAAGDLRALDTVTNVLN----FI 1872
Query: 142 KAKK---KRMVEAGIVEEIHE 159
K +K + ++ +EE+
Sbjct: 1873 KLQKIDIIELQKSLSLEEVEG 1893
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown
function; 2.10A {Bifidobacterium adolescentis atcc
1570ORGANISM_TAXID}
Length = 440
Score = 30.6 bits (69), Expect = 0.30
Identities = 21/82 (25%), Positives = 33/82 (40%), Gaps = 14/82 (17%)
Query: 59 RGKDLAVDPSFEFA-KRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYLAQRLRKARE 117
+GK F++A K P K W + + + RQ L + + L R+
Sbjct: 190 QGKMEWAQEEFDYALKEGLGPRKEHLIPW----MHVSHITEVMRDRQALAIVRALWTRRD 245
Query: 118 VETARDIKAVQRDIA---ILND 136
E AR + DIA +L+D
Sbjct: 246 -ELAR-----EYDIAPTLLLSD 261
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 1.8
Identities = 31/229 (13%), Positives = 66/229 (28%), Gaps = 65/229 (28%)
Query: 8 FCSSKIYPGHGIQFVRN-DCK-IFRFCRS-----KCHKLFKRKKNPRKTA---WT----- 52
+ I FV N DCK + +S + + K T WT
Sbjct: 16 YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 53 -KAYRKVRGKDLAVDPSF---EFAKRRNVPLKYDREF-------WN-------KTVEAIK 94
+ +K + L ++ F + P R + +N V ++
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 95 KVEHIKTKRQNLYLAQRLRKAREV---------------ETARDIKAVQR--------DI 131
++ LR A+ V + K + ++
Sbjct: 136 PYLKLRQA------LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNL 189
Query: 132 AILNDPTEAIKAKKKRMVEAGIVEEIHESENEAEENMEVDTHWETNEDK 180
N P ++ +K + + ++ S ++ N+++ H E +
Sbjct: 190 KNCNSPETVLEMLQKLLYQ---IDPNWTSRSDHSSNIKLRIHSIQAELR 235
>3pzl_A Agmatine ureohydrolase; structural genomics, PSI-2, protein
structure initiative, NE SGX research center for
structural genomics; 2.70A {Thermoplasma volcanium GSS1}
Length = 313
Score = 27.5 bits (62), Expect = 2.6
Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 69 FEFAKRRNVPLKYDREFWNKTVEAIKKVEHIKTKRQNLYL 108
FE R V + ++ +E + K + +Y+
Sbjct: 189 FEDPDFRKVSFISSFDVKKNGIDKY--IEEVDRKSRRVYI 226
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 27.2 bits (60), Expect = 3.7
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 9/78 (11%)
Query: 2 RIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRKVRGK 61
C +C++ ++ DC + +C K+ P K +KV
Sbjct: 219 GPHWCEYCANFMWGLIAQGVKCADCGL--NVHKQCSKMVPNDCKPDL----KHVKKVYSC 272
Query: 62 DLAVDPSFEFAKRRNVPL 79
DL P+
Sbjct: 273 DLTTLVKAH---TTKRPM 287
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR;
fatty acid synthase, acyl-carrier-protein, beta-ketoacyl
RED beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.1 bits (60), Expect = 4.6
Identities = 13/48 (27%), Positives = 20/48 (41%)
Query: 97 EHIKTKRQNLYLAQRLRKAREVETARDIKAVQRDIAILNDPTEAIKAK 144
E R+ L +RKA +ETA + K V + A I+ +
Sbjct: 739 EFTAKLRKELVETSEVRKAVSIETALEHKVVNGNSADAAYAQVEIQPR 786
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine
tetraphosphatase, monomer, PSI- 2, protein structure
initiative, nysgrc; 2.05A {Trypanosoma brucei}
Length = 262
Score = 26.2 bits (58), Expect = 6.8
Identities = 5/37 (13%), Positives = 10/37 (27%)
Query: 21 FVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYRK 57
+RN + + + N W +R
Sbjct: 160 TMRNLIEKEQEATGGVTLTATEETNDGGKPWASMWRG 196
>3u5c_V S26, YS25, 40S ribosomal protein S21-A; translation, ribosome,
ribosomal, ribosomal R ribosomal protein, eukaryotic
ribosome, RNA-protein C; 3.00A {Saccharomyces
cerevisiae} PDB: 3izb_T 3u5g_V
Length = 87
Score = 24.8 bits (54), Expect = 8.3
Identities = 13/55 (23%), Positives = 25/55 (45%)
Query: 106 LYLAQRLRKAREVETARDIKAVQRDIAILNDPTEAIKAKKKRMVEAGIVEEIHES 160
LY+ ++ + A D +VQ ++A +++ AI + +G V ES
Sbjct: 11 LYVPRKCSATNRIIKADDHASVQINVAKVDEEGRAIPGEYVTYALSGYVRSRGES 65
>1xfk_A Formimidoylglutamase; formiminoglutamase protein, vibrio cholerae
O1 biovar eltor, structure genomics, protein structure
initiative, MCSG; 1.80A {Vibrio cholerae} SCOP: c.42.1.1
Length = 336
Score = 26.1 bits (58), Expect = 8.4
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 69 FEFAKRRNVPLKYDREFWNKTVEAI-KKVEHIKTKRQNLYL 108
FE A + V D+ F +++ +++H LYL
Sbjct: 211 FERADKLGVWYVEDKAFSPLSLKDHLTQLQHFIDDCDYLYL 251
>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC
tepraloxydim, ATP-binding, biotin, fatty acid
biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae}
PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A*
3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A*
1uyt_A 1uyv_A
Length = 758
Score = 26.0 bits (57), Expect = 8.4
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 15/89 (16%)
Query: 77 VPLKYDREFWNKTVEAIK-KVEHIKTKRQNLYLAQRLR-------KAREVETARDIKAVQ 128
V +K+ RE T+ + K ++++ N LA + RE E +
Sbjct: 556 VGIKFRREKLLDTMNRLDDKYRELRSQLSNKSLAPEVHQQISKQLADRERELLPIYGQIS 615
Query: 129 RDIAILNDPTEAIKAKKKRMVEAGIVEEI 157
A L+D + RMV G++ +
Sbjct: 616 LQFADLHD-------RSSRMVAKGVISKE 637
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.133 0.398
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,911,786
Number of extensions: 168744
Number of successful extensions: 472
Number of sequences better than 10.0: 1
Number of HSP's gapped: 465
Number of HSP's successfully gapped: 40
Length of query: 186
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 98
Effective length of database: 4,244,745
Effective search space: 415985010
Effective search space used: 415985010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.1 bits)