RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4931
         (186 letters)



>d1vqou1 g.39.1.6 (U:4-56) Ribosomal protein L24e {Archaeon
          Haloarcula marismortui [TaxId: 2238]}
          Length = 53

 Score = 97.8 bits (244), Expect = 4e-28
 Identities = 18/52 (34%), Positives = 21/52 (40%)

Query: 5  TCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKNPRKTAWTKAYR 56
           C +C + I PG G  FV  D     FC SKC       +  R   WT   R
Sbjct: 2  ECDYCGTDIEPGTGTMFVHKDGATTHFCSSKCENNADLGREARNLEWTDTAR 53


>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 65

 Score = 24.7 bits (53), Expect = 2.1
 Identities = 11/45 (24%), Positives = 16/45 (35%), Gaps = 1/45 (2%)

Query: 1  MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHKLFKRKKN 45
          M  + C  C +  Y    ++ + N C     C S    LF R   
Sbjct: 1  MDDQGCPRCKTTKYRNPSLKLMVNVCG-HTLCESCVDLLFVRGAG 44


>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse
          (Mus musculus) [TaxId: 10090]}
          Length = 50

 Score = 23.9 bits (51), Expect = 3.3
 Identities = 6/38 (15%), Positives = 9/38 (23%), Gaps = 6/38 (15%)

Query: 1  MRIETCYFCSSKIYPGHGIQFVRNDCKIFRFCRSKCHK 38
          M    C  C S ++       +         C    H 
Sbjct: 9  MSPTFCDHCGSLLW------GLVKQGLKCEDCGMNVHH 40


>d1mhyb_ a.25.1.2 (B:) Methane monooxygenase hydrolase beta subunit
           {Methylosinus trichosporium [TaxId: 426]}
          Length = 383

 Score = 24.4 bits (53), Expect = 9.9
 Identities = 7/60 (11%), Positives = 18/60 (30%), Gaps = 6/60 (10%)

Query: 44  KNPRKTAWTKAYRKVR-GKDLAVDPSFEFAKRRNVPLKYDREFWNKTVE----AIKKVEH 98
           ++P +  W   Y K +  +                    D  + ++ +     A+   E+
Sbjct: 92  RDPARR-WHHPYVKDKSEEARYTQRFLAAYSSEGSIRTIDPYWRDEILNKYFGALLYSEY 150


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0658    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 727,501
Number of extensions: 33650
Number of successful extensions: 115
Number of sequences better than 10.0: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 11
Length of query: 186
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 106
Effective length of database: 1,309,196
Effective search space: 138774776
Effective search space used: 138774776
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.2 bits)