BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4937
(356 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9NXW9|ALKB4_HUMAN Alpha-ketoglutarate-dependent dioxygenase alkB homolog 4 OS=Homo
sapiens GN=ALKBH4 PE=1 SV=1
Length = 302
Score = 178 bits (451), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 102/337 (30%), Positives = 160/337 (47%), Gaps = 78/337 (23%)
Query: 7 CGCKGVRTCIKCEQEFGYENKNIVEFTEETYIYCPHCNKAWQGSDLYAYQSHPNHSGKSF 66
CGCKG+RTC+ CE++ G + W+ Y+
Sbjct: 15 CGCKGIRTCLICERQRGS-------------------DPPWELPPAKTYR---------- 45
Query: 67 DIGGVYIKEDFLTSQTKETYVYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIKEDF 126
++YC + W + G +F GV + EDF
Sbjct: 46 -------------------FIYC--SDTGWA-----VGTEESDFEGWAFPFPGVMLIEDF 79
Query: 127 LSEAETEDVMKQLDDLPWDKSQSGRRKQNFGPKCNFKKQKIKLGDFQGFPACTKFIQDRF 186
++ E ++++ +D PW SQSGRRKQ++GPK NF+KQK+K F G P+ ++ + R
Sbjct: 80 VTREEEAELVRLMDRDPWKLSQSGRRKQDYGPKVNFRKQKLKTEGFCGLPSFSREVVRRM 139
Query: 187 HQEDVLSHFQTIEQCTLEYNSENGSSIDNHIDDCWIWGERIVTVNLIGDSVLTLTYYNGD 246
L F+ +EQC L+Y E GS+ID H+DD W+WGER+V++NL+ +VL++
Sbjct: 140 GLYPGLEGFRPVEQCNLDYCPERGSAIDPHLDDAWLWGERLVSLNLLSPTVLSMC----- 194
Query: 247 SNKYNLNSPCFSYQKKYPDQKSTIVNDLSLNEKSTDSIVNETLS----SVVIRIPMPARS 302
++ P + E DS++ + S V + IP+PARS
Sbjct: 195 --------------REAPGSLLLCSAPSAAPEALVDSVIAPSRSVLCQEVEVAIPLPARS 240
Query: 303 LLVLWGEARYEWQHCVLRSDVIGRRVCIAYREFTAPY 339
LLVL G AR++W+H + R + RRVC+ +RE +A +
Sbjct: 241 LLVLTGAARHQWKHAIHRRHIEARRVCVTFRELSAEF 277
>sp|Q9D8F1|ALKB4_MOUSE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 4 OS=Mus
musculus GN=Alkbh4 PE=2 SV=1
Length = 300
Score = 177 bits (450), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 107/340 (31%), Positives = 164/340 (48%), Gaps = 78/340 (22%)
Query: 7 CGCKGVRTCIKCEQEFGYENKNIVEFTEETYIYCPHCNKAWQGSDLYAYQSHPNHSGKSF 66
CGCKG+RTC+ CE++ H + WQ
Sbjct: 13 CGCKGIRTCLICERQR-------------------HRDPPWQ------------------ 35
Query: 67 DIGGVYIKEDFLTSQTKETYVYCPHCNKAW----QGSDLYAYQSHPNHSGKSFDIGGVYI 122
+ Q K ++YCP + W +GSDL G +F GV +
Sbjct: 36 -----------ICLQKKCCFLYCP--DTGWAAGAEGSDL---------EGWAFPFPGVTL 73
Query: 123 KEDFLSEAETEDVMKQLDDLPWDKSQSGRRKQNFGPKCNFKKQKIKLGDFQGFPACTKFI 182
+DF++ E ++++ +D PW SQSGR+KQ++GPK NF+KQK+K+ FQG P ++ +
Sbjct: 74 IQDFVTPEEEAEMVRLMDCDPWKLSQSGRKKQDYGPKVNFRKQKLKMAGFQGLPGFSQKV 133
Query: 183 QDRFHQEDVLSHFQTIEQCTLEYNSENGSSIDNHIDDCWIWGERIVTVNLIGDSVLTLTY 242
R L FQ +EQC L+Y+ E GS+ID H+DD W+WGER+V++NL+ +V++++
Sbjct: 134 VQRMGLYPGLEDFQPVEQCNLDYSPERGSAIDPHLDDAWLWGERLVSLNLLSATVVSMSP 193
Query: 243 YNGDSNKYNLNSPCFSYQKKYPDQKSTIVNDLSLNEKSTDSIVNETLSSVVIRIPMPARS 302
+P P + D SL S E V + I +P RS
Sbjct: 194 ----------EAPGSLLLCSAPSVRPDAFED-SLVAPSRSVPCQE----VEVAITVPRRS 238
Query: 303 LLVLWGEARYEWQHCVLRSDVIGRRVCIAYREFTAPYMNN 342
LLVL G AR++W H + R + RRVC +RE ++ ++
Sbjct: 239 LLVLTGAARHQWTHAIHRRHIKARRVCATFRELSSEFLPG 278
>sp|Q07G10|ALKB8_XENTR Alkylated DNA repair protein alkB homolog 8 OS=Xenopus tropicalis
GN=alkbh8 PE=2 SV=2
Length = 628
Score = 38.9 bits (89), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 82/211 (38%), Gaps = 66/211 (31%)
Query: 119 GVYIKEDFLSEAETEDVMKQLDDLPWD------KSQSGRRKQNFG-----PKCNFKKQKI 167
G+ I EDF+S + +++ +D WD KS R+ +++G N K K
Sbjct: 137 GLIIVEDFVSPEQERTMLESID---WDSETSSQKSLKHRQVKHYGYEFRYDNNNVDKDKP 193
Query: 168 KLGDFQGFPACTKFIQDRFHQEDVLSHFQTIEQCTLEYNSENGSSIDNHIDDCWIWGERI 227
G F CT+ ++ + Q ++ H +Q T+ E G I H+D + + I
Sbjct: 194 LPGGLPDF--CTEALR-KCVQRGLIKH--DPDQLTIN-QYEPGQGIPPHVDTHSAFEDEI 247
Query: 228 VTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKKYPDQKSTIVNDLSLNEKSTDSIVNE 287
++++L + V+ + NG
Sbjct: 248 LSLSLGAEIVMDFKHPNGS----------------------------------------- 266
Query: 288 TLSSVVIRIPMPARSLLVLWGEARYEWQHCV 318
V+ + +P RSLL++ GE+RY W H +
Sbjct: 267 -----VVPVMLPQRSLLIMSGESRYLWTHGI 292
>sp|Q1WUF2|TRUB_LACS1 tRNA pseudouridine synthase B OS=Lactobacillus salivarius (strain
UCC118) GN=truB PE=3 SV=1
Length = 302
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 243 YNGDSNKYNLNSPCFSYQKKYPDQKSTIVNDLSLNEKSTDSIVNETLSSV---VIRIPMP 299
Y DS K + D + +++ + L+E +D +NE LSS +I++P P
Sbjct: 58 YLMDSGKVYKGEITLGFATTTEDLEGEVISKVKLSEPFSDEKINEILSSFIGDIIQVP-P 116
Query: 300 ARSLLVLWGEARYEWQHCVLRSDVIGRRVCIAY 332
S + + G+ YE+ + D+ RRV I Y
Sbjct: 117 IYSAIKVNGKKLYEYARAGEKVDIPERRVHIEY 149
>sp|Q80Y20|ALKB8_MOUSE Alkylated DNA repair protein alkB homolog 8 OS=Mus musculus
GN=Alkbh8 PE=2 SV=1
Length = 664
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 292 VVIRIPMPARSLLVLWGEARYEWQHCV 318
V +++ +P RSLLV+ GE+RY W H +
Sbjct: 268 VTVQVMLPRRSLLVMTGESRYLWTHGI 294
>sp|Q9NW07|ZN358_HUMAN Zinc finger protein 358 OS=Homo sapiens GN=ZNF358 PE=1 SV=2
Length = 568
Score = 36.2 bits (82), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 36/111 (32%), Positives = 47/111 (42%), Gaps = 15/111 (13%)
Query: 15 CIKCEQEFGYEN---KNIVEFTEETYIYCPHCNKAW-QGSDLYAYQ-----SHP---NHS 62
C C + FG + K++ T E CP C KA+ Q S L +Q P H
Sbjct: 265 CPVCAKGFGQGSALLKHLRTHTGERPYPCPQCGKAFGQSSALLQHQRTHTAERPYRCPHC 324
Query: 63 GKSFDIGGVYIKEDFLTSQTKETYVYCPHCNKAWQGSDLYAYQSHPNHSGK 113
GK+F G + L T E CPHC+KA+ S H HSG+
Sbjct: 325 GKAF--GQSSNLQHHLRIHTGERPYACPHCSKAFGQSSALLQHLH-VHSGE 372
>sp|A1A4L5|ALKB8_BOVIN Alkylated DNA repair protein alkB homolog 8 OS=Bos taurus GN=ALKBH8
PE=2 SV=1
Length = 664
Score = 35.4 bits (80), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 81/214 (37%), Gaps = 69/214 (32%)
Query: 119 GVYIKEDFLSEAETEDVMKQLDDLPW---------DKSQSGRRKQNFG-----PKCNFKK 164
G+ + E+ +S +ED L+ + W KS RR ++FG N K
Sbjct: 136 GLKVIEEIIS---SEDEKMLLESVNWTEDTENQNFQKSLKHRRVKHFGYEFHYENNNVDK 192
Query: 165 QKIKLGDFQGFPACTKFIQDRFHQEDVLSHFQTIEQCTLEYNSENGSSIDNHIDDCWIWG 224
K G G P + I +++ +E + H +Q T+ E G I HID +
Sbjct: 193 DKPLPG---GLPDICESILEKWLKEGFIKH--KPDQLTIN-QYEPGHGIPAHIDTHSAFE 246
Query: 225 ERIVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKKYPDQKSTIVNDLSLNEKSTDSI 284
+ I++++L + V+ K+PD
Sbjct: 247 DEIISLSLGSEIVMDF---------------------KHPD------------------- 266
Query: 285 VNETLSSVVIRIPMPARSLLVLWGEARYEWQHCV 318
+ + + +P RSLLV+ GE+RY W H +
Sbjct: 267 ------GMTVPVMLPCRSLLVMTGESRYLWTHGI 294
>sp|Q96BT7|ALKB8_HUMAN Alkylated DNA repair protein alkB homolog 8 OS=Homo sapiens
GN=ALKBH8 PE=1 SV=2
Length = 664
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 292 VVIRIPMPARSLLVLWGEARYEWQHCV 318
+ + + +P RSLLV+ GE+RY W H +
Sbjct: 268 IAVPVMLPRRSLLVMTGESRYLWTHGI 294
>sp|Q95K79|ALKB8_MACFA Alkylated DNA repair protein alkB homolog 8 OS=Macaca fascicularis
GN=ALKBH8 PE=2 SV=1
Length = 664
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 11/48 (22%)
Query: 282 DSIVNETLSSVVIR-----------IPMPARSLLVLWGEARYEWQHCV 318
D IV+ +L S ++ + +P RSLLV+ GE+RY W H +
Sbjct: 247 DEIVSLSLGSEIVMDFKHPDGTAVPVMLPRRSLLVMTGESRYLWTHGI 294
>sp|Q6IQE9|ALKB6_DANRE Alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 OS=Danio
rerio GN=alkbh6 PE=2 SV=1
Length = 234
Score = 33.5 bits (75), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 41/92 (44%), Gaps = 17/92 (18%)
Query: 120 VYIKEDFLSEAETEDVMKQLDDLPWDK--SQSGRRKQNFGPKCNFK-------------- 163
VY DF+SEAE E +++Q+ P K SGRR QN+G N K
Sbjct: 23 VYYIPDFISEAEEEFLLQQVYRAPKPKWTQLSGRRLQNWGGLPNPKGMLAEKLPDWLLEY 82
Query: 164 KQKI-KLGDFQGFPACTKFIQDRFHQEDVLSH 194
+KI LG F G A + + E ++ H
Sbjct: 83 TEKISALGAFAGKTANHVLVNEYKPGEGIMPH 114
>sp|Q9V2F9|AUBA_PYRAB RNA-binding protein AU-1 OS=Pyrococcus abyssi (strain GE5 / Orsay)
GN=aubA PE=3 SV=2
Length = 469
Score = 33.5 bits (75), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 16/71 (22%)
Query: 242 YYNGDSNK----YNLNSPCFSYQKK------------YPDQKSTIVNDLSLNEKSTDSIV 285
YY+ + N YN+N+P Y K +PD K I++ L E D I+
Sbjct: 391 YYDRNGNLKGEFYNINTPVEIYPDKARYVDLEVDIVKWPDGKKEIIDKEKLKEHYEDGII 450
Query: 286 NETLSSVVIRI 296
+E L V+RI
Sbjct: 451 SEKLYKAVLRI 461
>sp|Q14137|BOP1_HUMAN Ribosome biogenesis protein BOP1 OS=Homo sapiens GN=BOP1 PE=1 SV=2
Length = 746
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 133 EDVMKQLDDLPWDKSQSGRRKQNFGPKCNFKKQKIKLGDFQGFPACTKFIQDRFHQ 188
E ++ + + L W++ + G RK +F P+ K + PA +FIQ+RF +
Sbjct: 319 EYLLSEEERLAWEQQEPGERKLSFLPR--------KFPSLRAVPAYGRFIQERFER 366
>sp|O57857|AUBA_PYRHO RNA-binding protein AU-1 OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=aubA PE=3 SV=2
Length = 469
Score = 32.3 bits (72), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 16/71 (22%)
Query: 242 YYNGDSNK----YNLNSPCFSYQKK------------YPDQKSTIVNDLSLNEKSTDSIV 285
YY+ + N YN+N+P Y K +PD K I++ L E D I+
Sbjct: 391 YYDRNGNLKGEFYNINTPVEIYPDKARYIDLEVDIVKWPDGKKEIIDKEKLKEHYEDGII 450
Query: 286 NETLSSVVIRI 296
+E L V+RI
Sbjct: 451 SEKLYKSVLRI 461
>sp|Q8U4Q7|AUBA_PYRFU RNA-binding protein AU-1 OS=Pyrococcus furiosus (strain ATCC 43587
/ DSM 3638 / JCM 8422 / Vc1) GN=aubA PE=1 SV=1
Length = 469
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 16/71 (22%)
Query: 242 YYNGDSNK----YNLNSPCFSYQKK------------YPDQKSTIVNDLSLNEKSTDSIV 285
YY+ D N YN+N+P Y K +PD K I++ L E + I+
Sbjct: 391 YYDKDGNLKGEFYNINTPVEIYPDKARYVDLEVDIVRWPDGKKEIIDKEKLKEHYEEGII 450
Query: 286 NETLSSVVIRI 296
+E L +RI
Sbjct: 451 SEKLYKATLRI 461
>sp|Q5JHN3|AUBA_PYRKO RNA-binding protein AU-1 OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=aubA PE=3 SV=1
Length = 471
Score = 32.3 bits (72), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 16/71 (22%)
Query: 242 YYNGDSNK----YNLNSPCFSYQK------------KYPDQKSTIVNDLSLNEKSTDSIV 285
YY+ + N YN+N+P Y K+PD K I++ L E + I+
Sbjct: 393 YYDKNGNLKGEYYNINTPVEIYPDGARYVDLEVDIVKWPDGKKEIIDQEELKEHYEEGII 452
Query: 286 NETLSSVVIRI 296
+E L V+RI
Sbjct: 453 SEKLYRAVLRI 463
>sp|C5A2F3|AUBA_THEGJ RNA-binding protein AU-1 OS=Thermococcus gammatolerans (strain DSM
15229 / JCM 11827 / EJ3) GN=aubA PE=3 SV=1
Length = 471
Score = 32.0 bits (71), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/113 (26%), Positives = 47/113 (41%), Gaps = 17/113 (15%)
Query: 200 QCTLEYNSENGSSIDNHIDDCWIWGERIVTVNLIGDSVLTLTYYNGDSNK----YNLNSP 255
+ TL N + G D +D +G+ +T G YY+ + N YN+N+P
Sbjct: 352 RITLRRNLKPGKFYDG-LDLPIEFGDYAITEIEAGKWWFVHRYYDRNGNLKGEYYNINTP 410
Query: 256 CFSYQK------------KYPDQKSTIVNDLSLNEKSTDSIVNETLSSVVIRI 296
Y K+PD + I++ L E D I++E L V+RI
Sbjct: 411 VEIYPDRARYIDLEIDIVKWPDGEKEIIDKDKLREHYEDGIISEKLYKAVLRI 463
>sp|P08045|XFIN_XENLA Zinc finger protein Xfin OS=Xenopus laevis PE=1 SV=1
Length = 1350
Score = 31.6 bits (70), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 49/106 (46%), Gaps = 19/106 (17%)
Query: 15 CIKCEQEFGYEN---KNIVEFTEETYIYCPHCNKAW-QGSDLYAYQSHPNHSGK------ 64
C +C++ F + K++ T E +CP CNK + Q SDL +Q H+G+
Sbjct: 780 CNECDKSFFQTSDLVKHLRTHTGERPYHCPECNKGFIQNSDLVKHQR--THTGERPYTCS 837
Query: 65 SFDIGGVYIKEDFLT----SQTKETYVYCPHCNKAW-QGSDLYAYQ 105
D G +I+ LT + T E C C K + Q SDL +Q
Sbjct: 838 QCDKG--FIQRSALTKHMRTHTGEKPYKCEQCQKCFIQNSDLVKHQ 881
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.135 0.430
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 137,515,270
Number of Sequences: 539616
Number of extensions: 5894482
Number of successful extensions: 13058
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 13029
Number of HSP's gapped (non-prelim): 46
length of query: 356
length of database: 191,569,459
effective HSP length: 118
effective length of query: 238
effective length of database: 127,894,771
effective search space: 30438955498
effective search space used: 30438955498
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)