Query psy4937
Match_columns 356
No_of_seqs 189 out of 1041
Neff 5.7
Searched_HMMs 29240
Date Fri Aug 16 21:40:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4937.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4937hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3tht_A Alkylated DNA repair pr 100.0 2.3E-35 7.7E-40 290.0 16.0 175 114-338 107-315 (345)
2 2iuw_A Alkylated repair protei 100.0 2.2E-34 7.6E-39 269.6 15.5 182 115-339 37-233 (238)
3 3s57_A Alpha-ketoglutarate-dep 100.0 4.8E-31 1.7E-35 241.8 13.5 175 117-336 8-203 (204)
4 3i3q_A Alpha-ketoglutarate-dep 100.0 8.2E-30 2.8E-34 235.1 12.9 173 116-337 5-204 (211)
5 3dkq_A PKHD-type hydroxylase S 97.8 0.00011 3.8E-09 68.7 11.1 170 112-332 13-191 (243)
6 3itq_A Prolyl 4-hydroxylase, a 97.6 0.0003 1E-08 64.6 10.9 162 116-333 37-209 (216)
7 2jig_A Prolyl-4 hydroxylase; h 97.6 0.00037 1.3E-08 63.4 11.0 179 116-339 18-220 (224)
8 2hbt_A EGL nine homolog 1; pro 96.7 0.016 5.5E-07 53.8 12.0 176 115-334 23-211 (247)
9 3lfm_A Protein FTO; FAT MASS a 95.5 0.06 2E-06 54.3 10.2 42 291-334 272-313 (495)
10 2a1x_A Phytanoyl-COA dioxygena 92.5 1.9 6.5E-05 40.0 13.3 43 291-337 213-255 (308)
11 2fct_A Syringomycin biosynthes 90.8 6 0.0002 36.6 14.7 44 291-338 217-262 (313)
12 2opw_A Phyhd1 protein; double- 88.9 3.1 0.00011 38.1 11.0 43 291-337 225-267 (291)
13 3kt7_A PKHD-type hydroxylase T 86.9 12 0.00042 39.1 14.9 44 293-337 186-229 (633)
14 3gja_A CYTC3; halogenase, beta 85.0 3.3 0.00011 39.2 9.0 43 291-337 219-263 (319)
15 2rg4_A Uncharacterized protein 77.2 9.9 0.00034 34.0 8.8 36 293-332 168-203 (216)
16 2k5c_A Uncharacterized protein 62.4 1.4 4.7E-05 34.6 -0.3 75 37-145 8-88 (95)
17 3nnf_A CURA; non-HAEM Fe(II)/a 57.0 5.5 0.00019 38.5 2.7 46 291-340 231-278 (344)
18 3oox_A Putative 2OG-Fe(II) oxy 55.8 16 0.00055 34.3 5.8 42 291-332 215-267 (312)
19 1w9y_A 1-aminocyclopropane-1-c 52.5 26 0.00089 33.1 6.7 42 291-332 201-249 (319)
20 2js4_A UPF0434 protein BB2007; 44.7 9.4 0.00032 28.7 1.7 15 83-97 23-37 (70)
21 2pk7_A Uncharacterized protein 43.5 11 0.00038 28.2 2.0 15 83-97 23-37 (69)
22 2jr6_A UPF0434 protein NMA0874 42.8 11 0.00038 28.1 1.9 15 83-97 23-37 (68)
23 1gp6_A Leucoanthocyanidin diox 41.6 71 0.0024 30.5 7.9 42 291-332 255-303 (356)
24 2hf1_A Tetraacyldisaccharide-1 41.5 11 0.00038 28.1 1.7 15 83-97 23-37 (68)
25 4ayb_P DNA-directed RNA polyme 38.1 14 0.00049 25.8 1.7 29 12-45 3-31 (48)
26 1odm_A Isopenicillin N synthas 38.1 42 0.0015 31.6 5.6 41 291-332 238-284 (331)
27 1e4u_A Transcriptional repress 37.6 16 0.00056 27.4 2.1 38 5-53 29-66 (78)
28 3u50_C Telomerase-associated p 34.9 14 0.00047 32.5 1.4 11 35-45 40-50 (172)
29 4esj_A Type-2 restriction enzy 32.6 14 0.00048 34.3 1.2 12 34-45 31-42 (257)
30 1qyp_A RNA polymerase II; tran 32.1 25 0.00086 24.7 2.2 15 83-97 40-54 (57)
31 1p1p_A AA-conotoxin PIVA; neur 31.9 12 0.00041 22.6 0.4 8 5-12 12-19 (26)
32 2jrp_A Putative cytoplasmic pr 31.9 20 0.00069 27.8 1.8 7 88-94 33-39 (81)
33 4diq_A Lysine-specific demethy 31.8 3.7E+02 0.012 27.2 11.5 101 200-336 165-265 (489)
34 2jny_A Uncharacterized BCR; st 30.8 22 0.00074 26.5 1.8 15 83-97 25-39 (67)
35 3on7_A Oxidoreductase, iron/as 29.4 75 0.0026 29.2 5.7 42 291-332 198-250 (280)
36 2jne_A Hypothetical protein YF 28.6 20 0.0007 28.8 1.3 10 85-94 60-69 (101)
37 1vq8_Z 50S ribosomal protein L 27.0 17 0.0006 28.1 0.7 15 84-98 43-57 (83)
38 1twf_I B12.6, DNA-directed RNA 25.9 45 0.0015 27.2 3.1 36 11-49 3-38 (122)
39 1k82_A Formamidopyrimidine-DNA 25.7 31 0.0011 32.0 2.3 13 82-94 256-268 (268)
40 3a43_A HYPD, hydrogenase nicke 25.6 34 0.0012 28.7 2.3 36 11-46 69-116 (139)
41 1ee8_A MUTM (FPG) protein; bet 25.5 36 0.0012 31.5 2.6 14 82-95 251-264 (266)
42 2xzf_A Formamidopyrimidine-DNA 24.4 35 0.0012 31.6 2.4 13 82-94 258-270 (271)
43 2d74_B Translation initiation 24.2 40 0.0014 28.8 2.5 46 34-110 101-146 (148)
44 1l1o_C Replication protein A 7 22.4 33 0.0011 29.7 1.7 11 35-45 41-53 (181)
45 3qt1_I DNA-directed RNA polyme 22.0 64 0.0022 26.9 3.3 35 11-48 23-57 (133)
46 3nw0_A Non-structural maintena 21.1 36 0.0012 31.0 1.7 14 86-99 217-230 (238)
47 1wii_A Hypothetical UPF0222 pr 20.9 12 0.00039 29.3 -1.4 16 82-97 43-58 (85)
48 2kdx_A HYPA, hydrogenase/ureas 20.9 49 0.0017 26.6 2.3 27 11-46 72-99 (119)
49 3fxd_A Protein ICMQ; helix bun 20.2 70 0.0024 23.1 2.7 24 124-147 2-29 (57)
50 2rdq_A 1-deoxypentalenic acid 20.2 69 0.0024 28.8 3.4 44 290-337 207-253 (288)
No 1
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=100.00 E-value=2.3e-35 Score=290.03 Aligned_cols=175 Identities=22% Similarity=0.422 Sum_probs=130.0
Q ss_pred CCCCCCeEEeCCCCCHHHHHHHHHHhhcCCCC------ccccCcceeccCCccccCCCcccCC-CC-CCCcHHHHHHHHH
Q psy4937 114 SFDIGGVYIKEDFLSEAETEDVMKQLDDLPWD------KSQSGRRKQNFGPKCNFKKQKIKLG-DF-QGFPACTKFIQDR 185 (356)
Q Consensus 114 ~~~ipGl~~i~dFIS~~Ee~~Ll~~id~~pW~------~sqsgRR~q~yG~~~nyk~~kl~~g-~f-~~lP~~l~~l~~R 185 (356)
...+|||+|+|||||++||+.|++.|+-.++. ...++||+||||+.|+|++..+..+ ++ .+||+++..|++|
T Consensus 107 ~~lp~Gl~~~p~fis~~Ee~~Ll~~i~w~~~~~~~~~~~~l~~Rr~~~yG~~Y~Ys~~~~~~~~p~p~~~P~~L~~l~~r 186 (345)
T 3tht_A 107 QALPPGLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFGYEFHYENNNVDKDKPLSGGLPDICESFLEK 186 (345)
T ss_dssp CSCCTTEEEETTCSCHHHHHHHHTTCC----------------CEEECCC------------------CCCHHHHHHHHH
T ss_pred ccCCCceEEEcCcCCHHHHHHHHHhcccCCccccccCcccccCceEEEECCcccccccccccCCCCCcCcCHHHHHHHHH
Confidence 35567999999999999999998877632221 1245899999999999998887644 22 5799999999999
Q ss_pred HhhcccCCCCCCcceeee-EecCCCCCCccCCCCCcccccCceEEEecCCceEEEEeecCCCCCCcCCCCCccccCCCCC
Q psy4937 186 FHQEDVLSHFQTIEQCTL-EYNSENGSSIDNHIDDCWIWGERIVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKKYP 264 (356)
Q Consensus 186 i~~~~~l~~f~~~~q~~l-eY~pg~G~~I~pHvDd~~~~Ge~IaslSLgs~~vm~f~~~~~~~~~~~l~~~~~~~~~~e~ 264 (356)
+.+.+.. + ..+|+|++ +|+||. +|+||+|+++.||+.|++||||++++|.|++..
T Consensus 187 ~~~~~~~-~-~~~n~~lvN~Y~~G~--~I~~H~D~~~~~~~~I~slSLG~~~~f~f~~~~-------------------- 242 (345)
T 3tht_A 187 WLRKGYI-K-HKPDQMTINQYEPGQ--GIPAHIDTHSAFEDEIVSLSLGSEIVMDFKHPD-------------------- 242 (345)
T ss_dssp HHHHTSC-S-SCCSEEEEEEECTTC--CEEEECCCTTTBCSCEEEEEESSCEEEEEECTT--------------------
T ss_pred HHhcccC-C-CCCCEEEEEEecCCC--CEeeccCCchhcCCeEEEEECCCceeEEEccCC--------------------
Confidence 9864432 3 35788887 999965 599999999999999999999999999999741
Q ss_pred CcccccccccccccccccccccccCCceEEEEecCCCeEEEecchhhcccccccccCC--C-------------------
Q psy4937 265 DQKSTIVNDLSLNEKSTDSIVNETLSSVVIRIPMPARSLLVLWGEARYEWQHCVLRSD--V------------------- 323 (356)
Q Consensus 265 d~k~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~Lp~rSLLVMsG~ARy~W~H~I~~~d--v------------------- 323 (356)
+..++|.|++||||||+|++|+.|+|+|++++ .
T Consensus 243 --------------------------~~~~~l~L~~gsLlvM~G~~r~~w~H~I~~~~~d~~~~~~~~~~~~~~~~~~~~ 296 (345)
T 3tht_A 243 --------------------------GIAVPVMLPRRSLLVMTGESRYLWTHGITCRKFDTVQASESLKSGIITSDVGDL 296 (345)
T ss_dssp --------------------------SCEEEEEECTTEEEEECTHHHHTSEEEECCCSEEEEESGGGSSCEECCSSSSCE
T ss_pred --------------------------CceEEEEcCCCcEEEEChHHhhceEccCCcccCCccCcccccccccccccCCCc
Confidence 34688999999999999999999999999872 1
Q ss_pred ----CCCeEEEEecccCCC
Q psy4937 324 ----IGRRVCIAYREFTAP 338 (356)
Q Consensus 324 ----r~rRVSLTfR~l~~~ 338 (356)
|++|||||||++.+.
T Consensus 297 ~~~~r~~RiSlT~R~v~~~ 315 (345)
T 3tht_A 297 TLSKRGLRTSFTFRKVRQT 315 (345)
T ss_dssp EEEECCCEEEEEEECBCSS
T ss_pred eeccCCCEEEEEEEecCCC
Confidence 788999999999764
No 2
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10
Probab=100.00 E-value=2.2e-34 Score=269.59 Aligned_cols=182 Identities=19% Similarity=0.326 Sum_probs=145.8
Q ss_pred CCCCCeEEeCCCCCHHHHHHHHHHh-hcCCCCccc---------cCcceeccC-CccccCCCcccCCCCCCCcHHHHHHH
Q psy4937 115 FDIGGVYIKEDFLSEAETEDVMKQL-DDLPWDKSQ---------SGRRKQNFG-PKCNFKKQKIKLGDFQGFPACTKFIQ 183 (356)
Q Consensus 115 ~~ipGl~~i~dFIS~~Ee~~Ll~~i-d~~pW~~sq---------sgRR~q~yG-~~~nyk~~kl~~g~f~~lP~~l~~l~ 183 (356)
..+|||+|+++||+++|++.|++.| ++.||...+ .+|+++||| ..|+|+.... .+..+||+++..|+
T Consensus 37 ~~i~gl~~~~~fl~~~e~~~Ll~~l~~~~~w~~~~~~~~g~~~~~~R~~~~~g~~~Y~Ys~~~~--~~~p~wp~~l~~l~ 114 (238)
T 2iuw_A 37 TGVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGELPYTYSRITM--EPNPHWHPVLRTLK 114 (238)
T ss_dssp SSCEEEEEETTSSCHHHHHHHHHHHHHHSCCBCCEEESSSCEEECSSEEEEEECCCTTSCHHHH--CCBSSCCHHHHHHH
T ss_pred CCCCcEEEECCCCCHHHHHHHHHHHHHhCCCccCceecCCcccccCCeeEEcCCCccccCCccc--CCCCCCCHHHHHHH
Confidence 3578999999999999999999998 569998653 258889999 4566654433 33458999999999
Q ss_pred HHHhhcccCCCCCCcceeee-EecCCCCCCccCCCCCccccc--CceEEEecCCceEEEEeecCCCCCCcCCCCCccccC
Q psy4937 184 DRFHQEDVLSHFQTIEQCTL-EYNSENGSSIDNHIDDCWIWG--ERIVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQ 260 (356)
Q Consensus 184 ~Ri~~~~~l~~f~~~~q~~l-eY~pg~G~~I~pHvDd~~~~G--e~IaslSLgs~~vm~f~~~~~~~~~~~l~~~~~~~~ 260 (356)
+++++..+ .++|+|++ +|++|+ ++|+||+|+++.|| +.||+||||++++|.|++......
T Consensus 115 ~~~~~~~g----~~~n~~LvN~Y~~G~-d~i~~H~D~~~~~~~~~~IaslSLG~~~~f~f~~~~~~~~------------ 177 (238)
T 2iuw_A 115 NRIEENTG----HTFNSLLCNLYRNEK-DSVDWHSDDEPSLGRCPIIASLSFGATRTFEMRKKPPPEE------------ 177 (238)
T ss_dssp HHHHHHHS----CCCCEEEEEEECSTT-CCEEEECCCCGGGCSSCCEEEEEEESCEEEEEEECCC---------------
T ss_pred HHHHHHhC----CCCCEEEEEEECCCC-CceeCCcCChhhcCCCCcEEEEECCCCEEEEEeccCCccc------------
Confidence 99987643 35799888 999965 46999999999999 899999999999999998632100
Q ss_pred CCCCCcccccccccccccccccccccccCCceEEEEecCCCeEEEecchhhcccccccccC-CCCCCeEEEEecccCCCC
Q psy4937 261 KKYPDQKSTIVNDLSLNEKSTDSIVNETLSSVVIRIPMPARSLLVLWGEARYEWQHCVLRS-DVIGRRVCIAYREFTAPY 339 (356)
Q Consensus 261 ~~e~d~k~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~Lp~rSLLVMsG~ARy~W~H~I~~~-dvr~rRVSLTfR~l~~~~ 339 (356)
.+ .... ...++|.|++||||||.|++|+.|+|+|+++ ..+++|||||||.+.+.-
T Consensus 178 ----------~~-------------~~~~-~~~~~i~L~~gsllvM~G~~r~~w~H~I~~~~~~~~~RIsLTfR~v~~~~ 233 (238)
T 2iuw_A 178 ----------NG-------------DYTY-VERVKIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFRTVYPDP 233 (238)
T ss_dssp ----------------------------C-CCEEEEEECTTCEEEEEETHHHHEEEEECCCSSCCCCEEEEEEECCCC--
T ss_pred ----------cC-------------cccC-CceEEEEcCCCCEEEEChhhhCccEecCCCcCCCCCCEEEEEeeeccccc
Confidence 00 0001 4579999999999999999999999999986 579999999999998754
No 3
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A*
Probab=99.97 E-value=4.8e-31 Score=241.83 Aligned_cols=175 Identities=18% Similarity=0.294 Sum_probs=137.4
Q ss_pred CCC-eEEeCCCCCHHHHHHHHHHh-hcCCC---Ccc---c------cCcceeccC---CccccCCCcccCCCCCCCcHHH
Q psy4937 117 IGG-VYIKEDFLSEAETEDVMKQL-DDLPW---DKS---Q------SGRRKQNFG---PKCNFKKQKIKLGDFQGFPACT 179 (356)
Q Consensus 117 ipG-l~~i~dFIS~~Ee~~Ll~~i-d~~pW---~~s---q------sgRR~q~yG---~~~nyk~~kl~~g~f~~lP~~l 179 (356)
-+| -+++++||+++|++.|++.| ++.|| ++. . ..|...||| ..|+|+..... ..+||+++
T Consensus 8 ~~~~~~~~~~~l~~~~a~~l~~~l~~~~~w~~~~~~~~~~~gk~~~~pR~~~wyg~~~~~Y~Ysg~~~~---~~pwp~~L 84 (204)
T 3s57_A 8 AEGLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYTFSGLTLS---PKPWIPVL 84 (204)
T ss_dssp ETTEEEEEEECSCHHHHHHHHHHHHHHCCCCCGGGGEEEETTEEEECSSEEEEEECTTCCEEETTEEEC---CEECCHHH
T ss_pred eCCceEEecCcCCHHHHHHHHHHHHHhCCCCCcccceEEECCeEeccCcEEEEECCCCCCcccCCCccc---CCCCCHHH
Confidence 356 48899999999999999997 67999 321 1 247778898 34566554443 26899999
Q ss_pred HHHHHHHhhcccCCCCCCcceeee-EecCCCCCCccCCCCCccc--ccCceEEEecCCceEEEEeecCCCCCCcCCCCCc
Q psy4937 180 KFIQDRFHQEDVLSHFQTIEQCTL-EYNSENGSSIDNHIDDCWI--WGERIVTVNLIGDSVLTLTYYNGDSNKYNLNSPC 256 (356)
Q Consensus 180 ~~l~~Ri~~~~~l~~f~~~~q~~l-eY~pg~G~~I~pHvDd~~~--~Ge~IaslSLgs~~vm~f~~~~~~~~~~~l~~~~ 256 (356)
..|.+++++..+ ..+|+|++ +|++|. ++|+||.|++.. +++.||+||||++++|.|++.....
T Consensus 85 ~~l~~~~~~~~g----~~~n~~LvN~Y~~G~-d~i~~H~D~~~~~~~~~~IasvSLG~~~~f~~~~~~~~~--------- 150 (204)
T 3s57_A 85 ERIRDHVSGVTG----QTFNFVLINRYKDGS-DHICEHRDDERELAPGSPIASVSFGASRDFVFRHKDSRG--------- 150 (204)
T ss_dssp HHHHHHHHHHHC----CCCSEEEEEEESSTT-CCEEEECCCCTTBCTTCCEEEEEEESCEEEEEEEGGGCS---------
T ss_pred HHHHHHHHHHhC----CCCceeEEEEECCCC-CcccceecChhhccCCCcEEEEECCCceEEEEEEcCCCc---------
Confidence 999999987543 36798887 999966 369999999776 4689999999999999999863210
Q ss_pred cccCCCCCCcccccccccccccccccccccccCCceEEEEecCCCeEEEecchhhcccccccccCC-CCCCeEEEEeccc
Q psy4937 257 FSYQKKYPDQKSTIVNDLSLNEKSTDSIVNETLSSVVIRIPMPARSLLVLWGEARYEWQHCVLRSD-VIGRRVCIAYREF 335 (356)
Q Consensus 257 ~~~~~~e~d~k~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~Lp~rSLLVMsG~ARy~W~H~I~~~d-vr~rRVSLTfR~l 335 (356)
.+. ... ...++|.|++||||||.|++|+.|+|+|++.+ ++++|||||||.+
T Consensus 151 -------------------------~~~--~~~-~~~~~~~L~~GsllvM~g~~q~~w~H~Ip~~~~~~~~RislTFR~i 202 (204)
T 3s57_A 151 -------------------------KSP--SRR-VAVVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFRKI 202 (204)
T ss_dssp -------------------------SSC--SCC-CCCEEEEECTTEEEEEETTHHHHEEEEECCCTTCCSCEEEEEEECB
T ss_pred -------------------------ccc--ccC-CceEEEECCCCCEEEECchhhheeEeeccccCCCCCCEEEEEeeee
Confidence 000 001 45689999999999999999999999999974 7899999999987
Q ss_pred C
Q psy4937 336 T 336 (356)
Q Consensus 336 ~ 336 (356)
.
T Consensus 203 ~ 203 (204)
T 3s57_A 203 L 203 (204)
T ss_dssp C
T ss_pred c
Confidence 4
No 4
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...
Probab=99.96 E-value=8.2e-30 Score=235.13 Aligned_cols=173 Identities=16% Similarity=0.193 Sum_probs=134.0
Q ss_pred CCCCeEEeCCCCCHHHHHHHHHHhhcCCCCc----cc--cC-----cce-----eccC--CccccCCCc-ccCCCCCCCc
Q psy4937 116 DIGGVYIKEDFLSEAETEDVMKQLDDLPWDK----SQ--SG-----RRK-----QNFG--PKCNFKKQK-IKLGDFQGFP 176 (356)
Q Consensus 116 ~ipGl~~i~dFIS~~Ee~~Ll~~id~~pW~~----sq--sg-----RR~-----q~yG--~~~nyk~~k-l~~g~f~~lP 176 (356)
.-||+.++++|+. ++++.|++++.+..|.. -. .| |.+ .||| ..|.|+... ....++.++|
T Consensus 5 ~~~g~~~~~~~~~-~~~~~l~~~~~~~~~~~p~~~~~~pgg~~~s~~~~~~g~~~W~~d~~~Y~Ys~~~~~~~~pw~~~P 83 (211)
T 3i3q_A 5 LAAGAVILRRFAF-NAAEQLIRDINDVASQSPFRQMVTPGGYTMSVAMTNCGHLGWTTHRQGYLYSPIDPQTNKPWPAMP 83 (211)
T ss_dssp CBTTBEEETTTTT-TTHHHHHHHHHHHHHHSCCBCCBCTTSCBCSSEEEEESSBEEEEETTEEEEESBCTTTSSBCCCCC
T ss_pred cCCCCEEECCcCh-HHHHHHHHHHHHHHhcCCCceeEcCCCCcCchhhcccccceeecCCCCcCcCCCccCCCCCCCchH
Confidence 3579999999998 57889999998744432 11 12 222 3554 235555444 2234678899
Q ss_pred HHHHHHHHHHhhcccCCCCCCcceeee-EecCCCCCCccCCCC-CcccccCceEEEecCCceEEEEeecCCCCCCcCCCC
Q psy4937 177 ACTKFIQDRFHQEDVLSHFQTIEQCTL-EYNSENGSSIDNHID-DCWIWGERIVTVNLIGDSVLTLTYYNGDSNKYNLNS 254 (356)
Q Consensus 177 ~~l~~l~~Ri~~~~~l~~f~~~~q~~l-eY~pg~G~~I~pHvD-d~~~~Ge~IaslSLgs~~vm~f~~~~~~~~~~~l~~ 254 (356)
.+|..+++++....++..| .+|+|++ +|++|. +|+||+| +++.||+.|++||||++++|.|++...
T Consensus 84 ~~L~~l~~~~~~~~g~~~~-~pn~~LvN~Y~~G~--~i~~H~D~~e~~~~~pI~svSLG~~~~f~f~~~~~--------- 151 (211)
T 3i3q_A 84 QSFHNLCQRAATAAGYPDF-QPDACLINRYAPGA--KLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKR--------- 151 (211)
T ss_dssp HHHHHHHHHHHHHTTCTTC-CCCEEEEEEECTTC--CEEEECCCCCSCTTSCEEEEEEESCEEEEECCSST---------
T ss_pred HHHHHHHHHHHHhcCCCCc-CCCEEEEEEEcCCC--CcccccCCCccccCCCEEEEECCCCeEEEEecccC---------
Confidence 9999999999887655444 5688887 999965 5999999 788899999999999999999997521
Q ss_pred CccccCCCCCCcccccccccccccccccccccccCCceEEEEecCCCeEEEecchhhcccccccccCC------CCCCeE
Q psy4937 255 PCFSYQKKYPDQKSTIVNDLSLNEKSTDSIVNETLSSVVIRIPMPARSLLVLWGEARYEWQHCVLRSD------VIGRRV 328 (356)
Q Consensus 255 ~~~~~~~~e~d~k~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~Lp~rSLLVMsG~ARy~W~H~I~~~d------vr~rRV 328 (356)
. +..++|.|++||||||.|++|+ |.|+|++.+ .+++||
T Consensus 152 ----------------------------------~-~~~~~i~L~~GsllvM~G~~r~-~~H~I~~~~~~~~p~~~~~RI 195 (211)
T 3i3q_A 152 ----------------------------------N-DPLKRLLLEHGDVVVWGGESRL-FYHGIQPLKAGFHPLTIDCRY 195 (211)
T ss_dssp ----------------------------------T-SCCEEEEECTTCEEEECGGGTT-CCEEECCCCCCCBTTTBTCEE
T ss_pred ----------------------------------C-CceEEEECCCCCEEEECchHHc-eEeccCcccCCcCCCCCCCEE
Confidence 1 3468899999999999999998 999999974 256899
Q ss_pred EEEecccCC
Q psy4937 329 CIAYREFTA 337 (356)
Q Consensus 329 SLTfR~l~~ 337 (356)
|||||.+.+
T Consensus 196 sLTFR~~~~ 204 (211)
T 3i3q_A 196 NLTFRQAGK 204 (211)
T ss_dssp EEEEECCSC
T ss_pred EEEeeeccC
Confidence 999999975
No 5
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155}
Probab=97.81 E-value=0.00011 Score=68.69 Aligned_cols=170 Identities=15% Similarity=0.177 Sum_probs=92.7
Q ss_pred CCCCCCCCeEEeCCCCCHHHHHHHHHHhhcCCCCccccCcceeccCCccccCCC-cccCCCCCCCcHHHHHHHHHHhhcc
Q psy4937 112 GKSFDIGGVYIKEDFLSEAETEDVMKQLDDLPWDKSQSGRRKQNFGPKCNFKKQ-KIKLGDFQGFPACTKFIQDRFHQED 190 (356)
Q Consensus 112 ~~~~~ipGl~~i~dFIS~~Ee~~Ll~~id~~pW~~sqsgRR~q~yG~~~nyk~~-kl~~g~f~~lP~~l~~l~~Ri~~~~ 190 (356)
....--+++++++||||++|.++|++.+++.+|.......-.+ ...++.+ .+.. . .+....|.+|+.+.-
T Consensus 13 ~~~~~~~~i~~i~dvLs~~Ec~~li~~~e~~~~~dg~~t~g~~----~~~vr~n~~l~~----d-~~~~~~l~~~i~~~l 83 (243)
T 3dkq_A 13 ENLYFQGMLIEIPNVFSKQEVSHLREQLDARRWIDGNQTSGAM----ATTRKRNQQLDK----D-DPVAVALGQQIMDRL 83 (243)
T ss_dssp -CCCCBTTBEEECCSSCHHHHHHHHHHHHTSCCEEECCCSSBS----SCCCEEEEECCT----T-CHHHHHHHHHHHHHH
T ss_pred cccccCCCEEEECCCCCHHHHHHHHHHHhhCCCccCcccCCCc----cccceeeeEECC----C-CHHHHHHHHHHHHHH
Confidence 3444557899999999999999999999999998532211111 1112211 1111 1 135667777776542
Q ss_pred cCC-CCC------Ccceeee-EecCCCCCCccCCCCCcccccCceEEEecCCceEEEEeecCCCCCCcCCCCCccccCCC
Q psy4937 191 VLS-HFQ------TIEQCTL-EYNSENGSSIDNHIDDCWIWGERIVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKK 262 (356)
Q Consensus 191 ~l~-~f~------~~~q~~l-eY~pg~G~~I~pHvDd~~~~Ge~IaslSLgs~~vm~f~~~~~~~~~~~l~~~~~~~~~~ 262 (356)
... .|. ..+-+.+ .|.+ |+...||+|....-.+. + +..+.+++.-+=.+ .
T Consensus 84 ~~~~~f~~~~L~~~~e~~~~~rY~~--G~~y~~H~D~~~~~~~~--~---~~~r~~T~~lYLnd--------p------- 141 (243)
T 3dkq_A 84 LAHPQFVSAALPLQFYPPLFNRYQG--GETFGYHIDNAIRSTPD--G---MIRTDLSATLFLSE--------P------- 141 (243)
T ss_dssp HTCHHHHHHHCEEEEEEEEEEEECT--TCEEEEECBCSEEEETT--E---EEECCEEEEEECSC--------G-------
T ss_pred ccCcchhhcccccccccceEEEECC--CCeeccCCCCCCCCCCC--c---cccceEEEEEEeCC--------C-------
Confidence 211 011 1122333 8999 45799999974321000 0 01223333332100 0
Q ss_pred CCCcccccccccccccccccccccccCCceEEEEecCCCeEEEecchhhcccccccccCCCCCCeEEEEe
Q psy4937 263 YPDQKSTIVNDLSLNEKSTDSIVNETLSSVVIRIPMPARSLLVLWGEARYEWQHCVLRSDVIGRRVCIAY 332 (356)
Q Consensus 263 e~d~k~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~Lp~rSLLVMsG~ARy~W~H~I~~~dvr~rRVSLTf 332 (356)
++...|.+.. .. . .....|..+.|+++++... ..|++.+. .++.|.++|+
T Consensus 142 ----~~~~GGetvf---------~~-~-~~~~~V~P~~G~~v~F~s~----~lH~v~pV-~~G~R~~~~~ 191 (243)
T 3dkq_A 142 ----ENYQGGELVI---------QD-T-YGQQSIKLSAGSLVLYPSS----SLHQVTPV-LSGERTAAFM 191 (243)
T ss_dssp ----GGEEECCEEE---------EE-T-TEEEEECCCTTCEEEEETT----SEEEECCE-EEECEEEEEE
T ss_pred ----CCCCCceEEE---------ee-C-CCcEEEecCCCEEEEECCC----CeEcCccc-cccCEEEEEE
Confidence 0000111111 00 1 2246799999999999763 57999984 2789999997
No 6
>3itq_A Prolyl 4-hydroxylase, alpha subunit domain protei; double-stranded beta helix, alpha-keto dependent non-heme iron oxygenase; 1.40A {Bacillus anthracis str}
Probab=97.64 E-value=0.0003 Score=64.56 Aligned_cols=162 Identities=12% Similarity=0.057 Sum_probs=91.6
Q ss_pred CCCCeEEeCCCCCHHHHHHHHHHhhcCCCCccccCcceeccCCccccCCCcccCCCCCCCcHHHHHHHHHHhhcccCCCC
Q psy4937 116 DIGGVYIKEDFLSEAETEDVMKQLDDLPWDKSQSGRRKQNFGPKCNFKKQKIKLGDFQGFPACTKFIQDRFHQEDVLSHF 195 (356)
Q Consensus 116 ~ipGl~~i~dFIS~~Ee~~Ll~~id~~pW~~sqsgRR~q~yG~~~nyk~~kl~~g~f~~lP~~l~~l~~Ri~~~~~l~~f 195 (356)
.-|.+.+++||||++|.+.|++..... +..+..|+. ...-+++..+. .-+.. .+..+.|.+||.+..++.-
T Consensus 37 ~~P~i~~~~~fLs~~Ec~~Li~~a~~~-l~~s~v~~~----~~~~~~RtS~~--~wl~~-~~~v~~i~~Ri~~~~gl~~- 107 (216)
T 3itq_A 37 EEPLIVVLGNVLSDEECDELIELSKSK-LARSKVGSS----RDVNDIRTSSG--AFLDD-NELTAKIEKRISSIMNVPA- 107 (216)
T ss_dssp TTTTEEEEESCSCHHHHHHHHHHHHHH-HC------------CCCCGGGTTC--EECCC-CHHHHHHHHHHHHHHTSCG-
T ss_pred CCCCEEEECCcCCHHHHHHHHHHhhcc-cccceeccC----CccCCcEeeee--EEeCC-cHHHHHHHHHHHHhcCcee-
Confidence 468899999999999999999876531 332322211 11112221111 11122 5677889999988766531
Q ss_pred CCcceeee-EecCCCCCCccCCCCCccc-----ccCceEEEecCCceEEEEeecCCCCCCcCCCCCccccCCCCCCcccc
Q psy4937 196 QTIEQCTL-EYNSENGSSIDNHIDDCWI-----WGERIVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKKYPDQKST 269 (356)
Q Consensus 196 ~~~~q~~l-eY~pg~G~~I~pHvDd~~~-----~Ge~IaslSLgs~~vm~f~~~~~~~~~~~l~~~~~~~~~~e~d~k~~ 269 (356)
...+.+.+ .|.+| ....||.|.... -|.|+++ |--+=.+ + .
T Consensus 108 ~~~E~lqv~~Y~~G--~~y~~H~D~~~~~~~~~~~~R~~T----------~l~YLnd--------~------~------- 154 (216)
T 3itq_A 108 SHGEGLHILNYEVD--QQYKAHYDYFAEHSRSAANNRIST----------LVMYLND--------V------E------- 154 (216)
T ss_dssp GGBCCCEEEEECBT--CCEEEECSSCCTTSGGGGGCEEEE----------EEEECSC--------C------S-------
T ss_pred ccccceeEEEeCCC--CccccccCCCcCCCcccCCceEEE----------EEEeccc--------C------C-------
Confidence 12244444 89995 459999997432 2344444 3332100 0 0
Q ss_pred cccccccccccccccccccCCceEEEEecCCCeEEEecc-----hhhcccccccccCCCCCCeEEEEec
Q psy4937 270 IVNDLSLNEKSTDSIVNETLSSVVIRIPMPARSLLVLWG-----EARYEWQHCVLRSDVIGRRVCIAYR 333 (356)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~v~I~Lp~rSLLVMsG-----~ARy~W~H~I~~~dvr~rRVSLTfR 333 (356)
..|-+.. . ...+.|.-..|++|+... .....-.|+..+. +++.|.++|.-
T Consensus 155 ~GGeT~F------------p-~~~~~V~P~~G~al~f~~~~~~g~~d~~~lH~~~PV-~~G~K~v~~~W 209 (216)
T 3itq_A 155 EGGETFF------------P-KLNLSVHPRKGMAVYFEYFYQDQSLNELTLHGGAPV-TKGEKWIATQW 209 (216)
T ss_dssp EECCEEE------------T-TTTEEECCCTTCEEEEECCCSSHHHHHTTCEEECCE-EESCEEEEEEE
T ss_pred cCceeEe------------c-CCCCEEecCCCeEEEEeccCCCCCCCCcccccccee-ccccEEEEEee
Confidence 0010110 1 224678889999999874 3344567998884 26788888863
No 7
>2jig_A Prolyl-4 hydroxylase; hydrolase; HET: PD2; 1.85A {Chlamydomonas reinhardtii} PDB: 3gze_A 2v4a_A 2jij_A
Probab=97.61 E-value=0.00037 Score=63.39 Aligned_cols=179 Identities=17% Similarity=0.168 Sum_probs=97.3
Q ss_pred CCCCeEEeCCCCCHHHHHHHHHHhhcCCCCccccCcceeccCC--ccccCCCcccCCCCC-CCcHHHHHHHHHHhhcccC
Q psy4937 116 DIGGVYIKEDFLSEAETEDVMKQLDDLPWDKSQSGRRKQNFGP--KCNFKKQKIKLGDFQ-GFPACTKFIQDRFHQEDVL 192 (356)
Q Consensus 116 ~ipGl~~i~dFIS~~Ee~~Ll~~id~~pW~~sqsgRR~q~yG~--~~nyk~~kl~~g~f~-~lP~~l~~l~~Ri~~~~~l 192 (356)
.-|-+.+++||||++|.+.|++.... .+..+..++.. -|. ..+++..... .+. .-.+.++.|.+||.+..++
T Consensus 18 ~~P~i~~~~~fLs~~Ec~~li~~~~~-~~~~s~v~~~~--~g~~~~~~~R~s~~~--~l~~~~~~~~~~i~~ri~~~~gl 92 (224)
T 2jig_A 18 WSPRAFLLKNFLSDEECDYIVEKARP-KMVKSSVVDNE--SGKSVDSEIRTSTGT--WFAKGEDSVISKIEKRVAQVTMI 92 (224)
T ss_dssp TTTTEEEETTCSCHHHHHHHHHHHGG-GCEECEEEETT--TTEEEECSSBCSEEE--ECCTTCSHHHHHHHHHHHHHHTC
T ss_pred CCCCEEEEcccCCHHHHHHHHHHhhc-cCeeeeeecCC--CCcccccCCEEEeee--EecCCCCHHHHHHHHHHHHHhCC
Confidence 35679999999999999999998865 23322110000 011 1112222110 011 1245678889998886555
Q ss_pred CCCCCcceeee-EecCCCCCCccCCCCCccc--------ccCceEEEec-------CCceEEEEeecCCCCCCcCCCCCc
Q psy4937 193 SHFQTIEQCTL-EYNSENGSSIDNHIDDCWI--------WGERIVTVNL-------IGDSVLTLTYYNGDSNKYNLNSPC 256 (356)
Q Consensus 193 ~~f~~~~q~~l-eY~pg~G~~I~pHvDd~~~--------~Ge~IaslSL-------gs~~vm~f~~~~~~~~~~~l~~~~ 256 (356)
.-. ..+.+.+ .|.+|+ ...||.|.... -|.|++|+-+ |+.++| +. ++..
T Consensus 93 ~~~-~~e~~qv~rY~~G~--~y~~H~D~~~~~~~~~~~~~~~R~~T~l~YLnd~~~GGeT~F---p~--------~~~~- 157 (224)
T 2jig_A 93 PLE-NHEGLQVLHYHDGQ--KYEPHYDYFHDPVNAGPEHGGQRVVTMLMYLTTVEEGGETVL---PN--------AEQK- 157 (224)
T ss_dssp CGG-GBCCCEEEEEETTC--CEEEECCSSCCTTSSSCCCCSCEEEEEEEECSCCSEECCEEE---TT--------SSSC-
T ss_pred Ccc-cccceEEEecCCCc--cccCcccCCCCccccccccCCCeEEEEEEEecCCCCCCceeC---CC--------cccc-
Confidence 311 2233444 999954 59999996321 1345555443 122222 00 0000
Q ss_pred cccCCCCCCcccccccccccccccccccccccCCceEEEEecCCCeEEEec-----chhhcccccccccCCCCCCeEEEE
Q psy4937 257 FSYQKKYPDQKSTIVNDLSLNEKSTDSIVNETLSSVVIRIPMPARSLLVLW-----GEARYEWQHCVLRSDVIGRRVCIA 331 (356)
Q Consensus 257 ~~~~~~e~d~k~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~Lp~rSLLVMs-----G~ARy~W~H~I~~~dvr~rRVSLT 331 (356)
. .......+. ...+.|....|++|+.. |..-..-.|++.+. +++.|+++|
T Consensus 158 -----~------------------~~~~~~~c~-~~~~~V~P~~G~al~f~~~~~~g~~d~~~lH~~~PV-~~G~K~~~~ 212 (224)
T 2jig_A 158 -----V------------------TGDGWSECA-KRGLAVKPIKGDALMFYSLKPDGSNDPASLHGSCPT-LKGDKWSAT 212 (224)
T ss_dssp -----C------------------CSTTSCTTG-GGSEEECCCTTCEEEEESBCTTSCBCGGGCEEECCE-EESEEEEEE
T ss_pred -----c------------------ccccccccc-cCceEEecccCcEEEEEeeCCCCCCCCCCcccCCcc-ccceEEEEE
Confidence 0 000000001 23578999999999985 44445677999883 268899988
Q ss_pred ecccCCCC
Q psy4937 332 YREFTAPY 339 (356)
Q Consensus 332 fR~l~~~~ 339 (356)
.---..+|
T Consensus 213 ~Wi~~~~~ 220 (224)
T 2jig_A 213 KWIHVAPI 220 (224)
T ss_dssp EEEESSCC
T ss_pred EeEEcCCc
Confidence 75444444
No 8
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A*
Probab=96.67 E-value=0.016 Score=53.84 Aligned_cols=176 Identities=16% Similarity=0.212 Sum_probs=87.1
Q ss_pred CCCCCeEEeCCCCCHHHHHHHHHHhhc----CCCCccccCcceeccCCccccCCCcccC-CCCCC-CcHH--HHHHHHHH
Q psy4937 115 FDIGGVYIKEDFLSEAETEDVMKQLDD----LPWDKSQSGRRKQNFGPKCNFKKQKIKL-GDFQG-FPAC--TKFIQDRF 186 (356)
Q Consensus 115 ~~ipGl~~i~dFIS~~Ee~~Ll~~id~----~pW~~sqsgRR~q~yG~~~nyk~~kl~~-g~f~~-lP~~--l~~l~~Ri 186 (356)
+.-.|+.+++|||+++|.+.|++.+.. ..|...+.|+ +.-+..-+++...+.- ..-.+ .+.. +...++++
T Consensus 23 L~~~g~~Vid~fLs~ee~~~L~~~~~~~~~~g~~~~a~i~~--~~~~~~~~iR~d~i~wl~~~~~~~~~~~~l~~~i~~l 100 (247)
T 2hbt_A 23 MNKHGICVVDDFLGKETGQQIGDEVRALHDTGKFTDGQLVS--QKSDSSKDIRGDKITWIEGKEPGCETIGLLMSSMDDL 100 (247)
T ss_dssp HHHTSEEEESSSSCHHHHHHHHHHHHHHHHTTCSCSCCEEE--CCSSSTTCEECCEEEEECSCSTTCHHHHHHHHHHHHH
T ss_pred hccCCEEEECCCCCHHHHHHHHHHHHhhhhcCCcccccccc--ccccccccccccceeeecccccchhHHHHHHHHHHHH
Confidence 445799999999999999999998764 2355444443 1111222222222210 00011 2221 22222333
Q ss_pred hh-ccc-CCCCC---CcceeeeEecCCCCCCccCCCCCcccccCceEEEecCCceEEEEeecCCCCCCcCCCCCccccCC
Q psy4937 187 HQ-EDV-LSHFQ---TIEQCTLEYNSENGSSIDNHIDDCWIWGERIVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQK 261 (356)
Q Consensus 187 ~~-~~~-l~~f~---~~~q~~leY~pg~G~~I~pHvDd~~~~Ge~IaslSLgs~~vm~f~~~~~~~~~~~l~~~~~~~~~ 261 (356)
.. ... +..+. ..+.....|.| .|+...+|+|.. + +..+.+++--+=.+ .|+ .
T Consensus 101 ~~~ln~~lGl~~i~~~~e~~~~~Y~~-~G~~y~~H~D~~---~--------~~~R~~T~vlYLN~--~w~----~----- 157 (247)
T 2hbt_A 101 IRHCNGKLGSYKINGRTKAMVACYPG-NGTGYVRHVDNP---N--------GDGRCVTCIYYLNK--DWD----A----- 157 (247)
T ss_dssp HHHTTTTSTTCCEEEECCEEEEEECS-SSCCEEEECSSC---S--------CCSEEEEEEEECBT--TCC----H-----
T ss_pred HHHHhhhcCcccccccceEEEEEecC-CCCcccccccCC---C--------CCCceEEEEEEeCC--CCC----C-----
Confidence 22 111 11121 12223348986 345799999982 1 13455555443110 000 0
Q ss_pred CCCCcccccccccccccccccccccccCCceEEEEecCCCeEEEecchhhcccccccccCCCCCCeEEEEecc
Q psy4937 262 KYPDQKSTIVNDLSLNEKSTDSIVNETLSSVVIRIPMPARSLLVLWGEARYEWQHCVLRSDVIGRRVCIAYRE 334 (356)
Q Consensus 262 ~e~d~k~~~~~~~~~~~~~~~~~~~~~~~~~~v~I~Lp~rSLLVMsG~ARy~W~H~I~~~dvr~rRVSLTfR~ 334 (356)
....|...+ .. ... ....+|.-..|+|+++..+.+ ..|++.+ +.+.|.|||.--
T Consensus 158 ------~~~GG~l~~---~~-----~~~-~~~~~v~P~~grlv~F~s~~~--~~H~V~p--~~~~R~sit~W~ 211 (247)
T 2hbt_A 158 ------KVSGGILRI---FP-----EGK-AQFADIEPKFDRLLFFWSDRR--NPHEVQP--AYATRYAITVWY 211 (247)
T ss_dssp ------HHHBCCEEE---CC-----TTC-SSCEEECCBTTEEEEEECSTT--CCEEECC--BSSCEEEEEEEE
T ss_pred ------CCCceeEEE---ec-----CCC-CceEEEEcCCCEEEEEecCCC--ceeeecc--CCCEEEEEEEEE
Confidence 000011110 00 001 234677777899999986432 4699998 578999999733
No 9
>3lfm_A Protein FTO; FAT MASS and obesity associated (FTO) protein, Fe2+/2-oxoGlu (2-OG)-dependent oxidative DNA/RNA demethylases, oxidoreduc; HET: 3DT OGA; 2.50A {Homo sapiens}
Probab=95.54 E-value=0.06 Score=54.28 Aligned_cols=42 Identities=21% Similarity=0.327 Sum_probs=38.2
Q ss_pred ceEEEEecCCCeEEEecchhhcccccccccCCCCCCeEEEEecc
Q psy4937 291 SVVIRIPMPARSLLVLWGEARYEWQHCVLRSDVIGRRVCIAYRE 334 (356)
Q Consensus 291 ~~~v~I~Lp~rSLLVMsG~ARy~W~H~I~~~dvr~rRVSLTfR~ 334 (356)
.+...|+|+.|+.|.|-++--..++|+|..-. ..|.|-|.|-
T Consensus 272 tP~L~vpL~sgd~Y~Mldd~N~~HqH~VlaG~--~~RfSSTHRV 313 (495)
T 3lfm_A 272 TPGLAIPLHQGDCYFMLDDLNATHQHCVLAGS--QPRFSSTHRV 313 (495)
T ss_dssp SCEEEEEECTTCEEEECTTHHHHEEEEEECCS--SCEEEEEEEC
T ss_pred CCceeeecCCCCeeeecchhhhhhhhhhhcCC--Ccccccccee
Confidence 45789999999999999999999999999964 4999999994
No 10
>2a1x_A Phytanoyl-COA dioxygenase; beta jelly roll, double-stranded beta-helix, structural GENO structural genomics consortium, SGC, oxidoreductase; HET: AKG; 2.50A {Homo sapiens} SCOP: b.82.2.9
Probab=92.48 E-value=1.9 Score=40.04 Aligned_cols=43 Identities=14% Similarity=0.076 Sum_probs=34.0
Q ss_pred ceEEEEecCCCeEEEecchhhcccccccccCCCCCCeEEEEecccCC
Q psy4937 291 SVVIRIPMPARSLLVLWGEARYEWQHCVLRSDVIGRRVCIAYREFTA 337 (356)
Q Consensus 291 ~~~v~I~Lp~rSLLVMsG~ARy~W~H~I~~~dvr~rRVSLTfR~l~~ 337 (356)
...+.+.+++|+++++.+.. .|+-.+..-...|.++++|....
T Consensus 213 ~~~v~~~~~aGd~vlf~~~~----~H~s~~N~s~~~R~~~~~~y~~~ 255 (308)
T 2a1x_A 213 KARVHLVMEKGDTVFFHPLL----IHGSGQNKTQGFRKAISCHFASA 255 (308)
T ss_dssp SCCEEECBCTTCEEEECTTC----CEEECCBCSSSCEEEEEEEEEET
T ss_pred CCeEEccCCCccEEEECCCc----cccCCCCCCCCceEEEEEEEECC
Confidence 34688999999999999953 38777765567899999987755
No 11
>2fct_A Syringomycin biosynthesis enzyme 2; mononuclear iron, cupin, halogenase, biosynthetic protein; HET: DSU AKG; 1.60A {Pseudomonas syringae PV} SCOP: b.82.2.9 PDB: 2fcu_A* 2fcv_A*
Probab=90.80 E-value=6 Score=36.64 Aligned_cols=44 Identities=16% Similarity=0.282 Sum_probs=35.5
Q ss_pred ceEEEEecCCCeEEEecchhhcccccccccCC--CCCCeEEEEecccCCC
Q psy4937 291 SVVIRIPMPARSLLVLWGEARYEWQHCVLRSD--VIGRRVCIAYREFTAP 338 (356)
Q Consensus 291 ~~~v~I~Lp~rSLLVMsG~ARy~W~H~I~~~d--vr~rRVSLTfR~l~~~ 338 (356)
...+.+.|++|+++++.+.. .|+-.+.. -..+|.++++|.+...
T Consensus 217 ~~~v~~~~~aGd~v~f~~~l----~H~s~~N~~ss~~~R~a~~~~y~~~~ 262 (313)
T 2fct_A 217 ASAVPMQMKAGQFIIFWSTL----MHASYPHSGESQEMRMGFASRYVPSF 262 (313)
T ss_dssp GGCEEECBCTTEEEEEETTS----EEEECCBCSSSSSCEEEEEEEEEETT
T ss_pred CceeEeeeCCceEEEEeCCc----eeeCCCCCCCCCCceEEEEEEEECCC
Confidence 45789999999999999963 38777765 5778999999887653
No 12
>2opw_A Phyhd1 protein; double-stranded beta helix, oxygenase, structural GE structural genomics consortium, SGC, oxidoreductase; 1.90A {Homo sapiens} PDB: 3obz_A*
Probab=88.90 E-value=3.1 Score=38.14 Aligned_cols=43 Identities=19% Similarity=0.277 Sum_probs=34.7
Q ss_pred ceEEEEecCCCeEEEecchhhcccccccccCCCCCCeEEEEecccCC
Q psy4937 291 SVVIRIPMPARSLLVLWGEARYEWQHCVLRSDVIGRRVCIAYREFTA 337 (356)
Q Consensus 291 ~~~v~I~Lp~rSLLVMsG~ARy~W~H~I~~~dvr~rRVSLTfR~l~~ 337 (356)
...+.+.+++|+++++.+.+ .|+-.+..-...|+++++|.+..
T Consensus 225 ~~~v~~~~~aGd~~~f~~~~----~H~s~~N~s~~~R~~~~~~~~~~ 267 (291)
T 2opw_A 225 SLFVPTPVQRGALVLIHGEV----VHKSKQNLSDRSRQAYTFHLMEA 267 (291)
T ss_dssp GGCEEECBCTTCEEEEETTC----EEEECCBCSSSCCCEEEEEEEEC
T ss_pred CCeeecccCCCcEEEEcCCc----eecCCCCCCCCceEEEEEEEEcC
Confidence 34788999999999999963 38877664567899999998775
No 13
>3kt7_A PKHD-type hydroxylase TPA1; double-stranded beta helix fold, dioxygenase, iron, mRNP complex, prolyl hydroxylase; HET: AKG; 1.77A {Saccharomyces cerevisiae} PDB: 3kt1_A 3kt4_A 3mgu_A
Probab=86.95 E-value=12 Score=39.13 Aligned_cols=44 Identities=9% Similarity=0.008 Sum_probs=29.3
Q ss_pred EEEEecCCCeEEEecchhhcccccccccCCCCCCeEEEEecccCC
Q psy4937 293 VIRIPMPARSLLVLWGEARYEWQHCVLRSDVIGRRVCIAYREFTA 337 (356)
Q Consensus 293 ~v~I~Lp~rSLLVMsG~ARy~W~H~I~~~dvr~rRVSLTfR~l~~ 337 (356)
..+|.=-.++|+++.-.-..-| |+|.+.-....|.|||---..|
T Consensus 186 ~~~I~P~fNrLV~F~vsp~~S~-H~V~eV~~~~~RlSItGWF~~p 229 (633)
T 3kt7_A 186 SAKLVPQFNQIAFFKVLPGFSF-HDXEEVKVDKHRLSIQGWYHIP 229 (633)
T ss_dssp SEEECCCTTEEEEEECCTTTCC-EEECCBCSSCCEEEEEEEEECC
T ss_pred eEEEecCCCeEEEEEcCCCCCc-CCCCccCCCCCEEEEEEEeccC
Confidence 4556656688888876533445 8887643378899999755555
No 14
>3gja_A CYTC3; halogenase, beta barrel, biosynthetic protein; 2.20A {Streptomyces} PDB: 3gjb_A*
Probab=85.01 E-value=3.3 Score=39.19 Aligned_cols=43 Identities=16% Similarity=0.274 Sum_probs=33.8
Q ss_pred ceEEEEecCCCeEEEecchhhcccccccccCC--CCCCeEEEEecccCC
Q psy4937 291 SVVIRIPMPARSLLVLWGEARYEWQHCVLRSD--VIGRRVCIAYREFTA 337 (356)
Q Consensus 291 ~~~v~I~Lp~rSLLVMsG~ARy~W~H~I~~~d--vr~rRVSLTfR~l~~ 337 (356)
...+.+.|++|+++++.+.. .|+=.+.. -...|.++++|.+..
T Consensus 219 ~~~v~~~~~aGd~v~f~~~~----~H~s~~N~~ts~~~R~a~~~~y~~~ 263 (319)
T 3gja_A 219 SQAYPMVLKPGEAVIFWSNT----MHASLPHTGSKTDYRMGFAARYVPT 263 (319)
T ss_dssp --CCBCCBCTTEEEEEETTS----CEEECCCCSCTTCCEEEEEEEEEET
T ss_pred CceeEeeECCCeEEEEcCCc----cccCCCCCCCCCCcEEEEEEEEECC
Confidence 34678999999999999975 37777665 678899999998755
No 15
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A
Probab=77.23 E-value=9.9 Score=34.04 Aligned_cols=36 Identities=11% Similarity=0.127 Sum_probs=29.1
Q ss_pred EEEEecCCCeEEEecchhhcccccccccCCCCCCeEEEEe
Q psy4937 293 VIRIPMPARSLLVLWGEARYEWQHCVLRSDVIGRRVCIAY 332 (356)
Q Consensus 293 ~v~I~Lp~rSLLVMsG~ARy~W~H~I~~~dvr~rRVSLTf 332 (356)
...|.-..|.|+|+-. . ..|+|.+..-.+.||||+|
T Consensus 168 ~~~i~P~~G~lvlFpS--~--l~H~V~p~~~~~~RiSIsF 203 (216)
T 2rg4_A 168 FRSVAPKVGDVLLWES--W--LRHEVPMNMAEEDRISVSF 203 (216)
T ss_dssp EEEECCCTTEEEEEET--T--SCEEECCCCSSSCEEEEEE
T ss_pred eeEecCCCCeEEEECC--C--CEEeccCCCCCCCEEEEEE
Confidence 3577888999999943 3 6699999766789999999
No 16
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=62.43 E-value=1.4 Score=34.59 Aligned_cols=75 Identities=25% Similarity=0.479 Sum_probs=47.1
Q ss_pred ccccCCCCcccccCccccccCCCCCCCCccccccccccccccccc-ccccee-eccccccccccCccccccCCCCCCCCC
Q psy4937 37 YIYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIKEDFLTSQ-TKETYV-YCPHCNKAWQGSDLYAYQSHPNHSGKS 114 (356)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~c~~c~~~~~g~~~~~~~~~~~h~~~~ 114 (356)
...||.|+.+-.=.+||++--.-.+-.. |-.|+..|- ....|+ -||.|+--|-|.
T Consensus 8 ~~~~PlCG~~L~W~eLIeQML~~en~~e--------i~kDr~~Fl~~~e~F~FkCP~CgEEFyG~--------------- 64 (95)
T 2k5c_A 8 MAKCPICGSPLKWEELIEEMLIIENFEE--------IVKDRERFLAQVEEFVFKCPVCGEEFYGK--------------- 64 (95)
T ss_dssp CEECSSSCCEECHHHHHHHSTTCSTHHH--------HTTCHHHHHHHHHHSEEECTTTCCEEETT---------------
T ss_pred cccCCcCCCccCHHHHHHHHHhhccHHH--------HHhhHHHHHHHHHHHhhcCCCccHHHhcc---------------
Confidence 3569999999777888887765554111 111222221 234454 499999766655
Q ss_pred CCCCCeEEeCCCCCHHHHHHHHHHhhc----CCCC
Q psy4937 115 FDIGGVYIKEDFLSEAETEDVMKQLDD----LPWD 145 (356)
Q Consensus 115 ~~ipGl~~i~dFIS~~Ee~~Ll~~id~----~pW~ 145 (356)
+|..+|++..++.|++ ..|.
T Consensus 65 -----------~Lp~~EaeKVFELLNdFkGsIDwe 88 (95)
T 2k5c_A 65 -----------TLPRREAEKVFELLNDFKGGIDWE 88 (95)
T ss_dssp -----------SSCTTTHHHHHHHHHSCSSSCBTT
T ss_pred -----------cCChHHHHHHHHHHHHccCccccc
Confidence 4556688888888875 5666
No 17
>3nnf_A CURA; non-HAEM Fe(II)/alpha-ketoglutarate-dependent enzymes, catal cryptic chlorination, biosynthetic protein; HET: AKG; 2.20A {Lyngbya majuscula} PDB: 3nnj_A 3nnl_A* 3nnm_A
Probab=56.97 E-value=5.5 Score=38.50 Aligned_cols=46 Identities=7% Similarity=-0.141 Sum_probs=34.2
Q ss_pred ceEEEEecCCCeEEEecchhhccccccccc--CCCCCCeEEEEecccCCCCC
Q psy4937 291 SVVIRIPMPARSLLVLWGEARYEWQHCVLR--SDVIGRRVCIAYREFTAPYM 340 (356)
Q Consensus 291 ~~~v~I~Lp~rSLLVMsG~ARy~W~H~I~~--~dvr~rRVSLTfR~l~~~~~ 340 (356)
...+.-.|+||+.+++..-+ .|+-++ ..-..+|--+++|.+-..-.
T Consensus 231 ~~~~ewd~epGDav~F~~~t----lHga~plgn~~~~rRRAfS~RfvGDDar 278 (344)
T 3nnf_A 231 DGYEEDEYNLGDAFFFNKYV----LHQSVPLKPGLHKLRRAFVIRLVDYDTR 278 (344)
T ss_dssp TCEEECCBCTTCEEEEETTC----EEEECCBCTTSCSCEEEEEEEEEETTCB
T ss_pred hhhccccCCCCcEEEEecce----eecCCCCCCCCccceeEEEEEEecCcce
Confidence 44688899999999998755 487773 23456787899998876543
No 18
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15}
Probab=55.80 E-value=16 Score=34.27 Aligned_cols=42 Identities=21% Similarity=0.198 Sum_probs=33.7
Q ss_pred ceEEEEecCCCeEEEecchhhcccccccccCC---C--------CCCeEEEEe
Q psy4937 291 SVVIRIPMPARSLLVLWGEARYEWQHCVLRSD---V--------IGRRVCIAY 332 (356)
Q Consensus 291 ~~~v~I~Lp~rSLLVMsG~ARy~W~H~I~~~d---v--------r~rRVSLTf 332 (356)
+..+.|+-.+++++|.-|++=-.|..+.-+.- | ...|+||+|
T Consensus 215 g~W~~V~p~pg~~vVNiGD~l~~~TnG~~kS~~HRVv~~~~~~~~~~R~Sia~ 267 (312)
T 3oox_A 215 GQWLPINPPPGCLVINIGDMLERLTNNVLPSTVHRVVNPPPERRGVPRYSTPF 267 (312)
T ss_dssp SCEEECCCCSSCEEEEECHHHHHHTTTSSCCCCEEECCCCGGGTTSCEEECCE
T ss_pred CcEEECCCCCCeEEEEhHHHHHHHhCCeecCCCceEeCCCccCCCCCEEEEEE
Confidence 56888999999999999999999987766531 1 345999988
No 19
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X
Probab=52.53 E-value=26 Score=33.08 Aligned_cols=42 Identities=21% Similarity=0.181 Sum_probs=34.9
Q ss_pred ceEEEEecCCCeEEEecchhhcccccccccCC-------CCCCeEEEEe
Q psy4937 291 SVVIRIPMPARSLLVLWGEARYEWQHCVLRSD-------VIGRRVCIAY 332 (356)
Q Consensus 291 ~~~v~I~Lp~rSLLVMsG~ARy~W~H~I~~~d-------vr~rRVSLTf 332 (356)
+..+.|+-.+++++|.-|++=-.|..+.-+.- -...|+|+.|
T Consensus 201 g~Wi~V~p~pgalvVNiGD~l~~~SnG~~kS~~HRVv~~~~~~R~Sia~ 249 (319)
T 1w9y_A 201 GQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLAS 249 (319)
T ss_dssp TEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSSCCEEEEE
T ss_pred CeEEEcccCCCcEEEEhHHHHHHHhCCeeecccceecCCCCCCceEEEE
Confidence 66888999999999999999999988876641 1457999988
No 20
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=44.67 E-value=9.4 Score=28.69 Aligned_cols=15 Identities=13% Similarity=0.235 Sum_probs=12.6
Q ss_pred ccceeeccccccccc
Q psy4937 83 KETYVYCPHCNKAWQ 97 (356)
Q Consensus 83 ~~~~~~c~~c~~~~~ 97 (356)
.....+|+.|+++||
T Consensus 23 ~~~~LiC~~cg~~YP 37 (70)
T 2js4_A 23 AQAELVCNADRLAFP 37 (70)
T ss_dssp TTTEEEETTTTEEEE
T ss_pred CCCEEEcCCCCceec
Confidence 346789999999998
No 21
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=43.48 E-value=11 Score=28.17 Aligned_cols=15 Identities=13% Similarity=0.131 Sum_probs=12.6
Q ss_pred ccceeeccccccccc
Q psy4937 83 KETYVYCPHCNKAWQ 97 (356)
Q Consensus 83 ~~~~~~c~~c~~~~~ 97 (356)
.....+|+.|+++||
T Consensus 23 ~~~~LiC~~cg~~YP 37 (69)
T 2pk7_A 23 DKTELISKGAGLAYP 37 (69)
T ss_dssp TSSEEEETTTTEEEE
T ss_pred CCCEEEcCCCCcEec
Confidence 346788999999998
No 22
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=42.79 E-value=11 Score=28.13 Aligned_cols=15 Identities=7% Similarity=0.242 Sum_probs=12.6
Q ss_pred ccceeeccccccccc
Q psy4937 83 KETYVYCPHCNKAWQ 97 (356)
Q Consensus 83 ~~~~~~c~~c~~~~~ 97 (356)
.....+|+.|+++||
T Consensus 23 ~~~~LiC~~cg~~YP 37 (68)
T 2jr6_A 23 DKQELWSRQAKLAYP 37 (68)
T ss_dssp TTTEEEETTTTEEEE
T ss_pred CCCEEEcCCCCcEec
Confidence 346788999999998
No 23
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A*
Probab=41.60 E-value=71 Score=30.49 Aligned_cols=42 Identities=12% Similarity=0.002 Sum_probs=35.1
Q ss_pred ceEEEEecCCCeEEEecchhhcccccccccCC-------CCCCeEEEEe
Q psy4937 291 SVVIRIPMPARSLLVLWGEARYEWQHCVLRSD-------VIGRRVCIAY 332 (356)
Q Consensus 291 ~~~v~I~Lp~rSLLVMsG~ARy~W~H~I~~~d-------vr~rRVSLTf 332 (356)
+..+.|+-.+++|+|.-|++=-.|..+.-+.- ....|+||+|
T Consensus 255 g~Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~~R~Sia~ 303 (356)
T 1gp6_A 255 GKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAV 303 (356)
T ss_dssp TEEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEECCCSSCCEEEEEE
T ss_pred CcEEECcCCCCeEEEEeccHHHHhcCCEeeccCceecCCCCCCEEEEEE
Confidence 66889999999999999999999998876641 2567999988
No 24
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=41.48 E-value=11 Score=28.10 Aligned_cols=15 Identities=13% Similarity=0.224 Sum_probs=12.6
Q ss_pred ccceeeccccccccc
Q psy4937 83 KETYVYCPHCNKAWQ 97 (356)
Q Consensus 83 ~~~~~~c~~c~~~~~ 97 (356)
.....+|+.|+++||
T Consensus 23 ~~~~LiC~~cg~~YP 37 (68)
T 2hf1_A 23 SKDELICKGDRLAFP 37 (68)
T ss_dssp TTTEEEETTTTEEEE
T ss_pred CCCEEEcCCCCcEec
Confidence 346788999999998
No 25
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=38.14 E-value=14 Score=25.82 Aligned_cols=29 Identities=31% Similarity=0.583 Sum_probs=21.9
Q ss_pred eeeccccccccCcccccccccccccccccCCCCc
Q psy4937 12 VRTCIKCEQEFGYENKNIVEFTEETYIYCPHCNK 45 (356)
Q Consensus 12 ~r~c~~ce~~~~~~~~~~~~~~~~~~~~~~~~~~ 45 (356)
|-.|+.|-+.+..+..+. +.-|.||.|+-
T Consensus 3 iY~C~rCg~~fs~~el~~-----lP~IrCpyCGy 31 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKV-----LPGVRCPYCGY 31 (48)
T ss_dssp --CCCCTTTTCCCCCSCC-----CSSSCCTTTCC
T ss_pred EEEeeccCCCccHHHHhh-----CCCcccCccCc
Confidence 457999999988776644 57789999985
No 26
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ...
Probab=38.06 E-value=42 Score=31.65 Aligned_cols=41 Identities=12% Similarity=0.140 Sum_probs=34.4
Q ss_pred ceEEEEecCCCeEEEecchhhcccccccccCC------CCCCeEEEEe
Q psy4937 291 SVVIRIPMPARSLLVLWGEARYEWQHCVLRSD------VIGRRVCIAY 332 (356)
Q Consensus 291 ~~~v~I~Lp~rSLLVMsG~ARy~W~H~I~~~d------vr~rRVSLTf 332 (356)
+ .+.|+-.+++|+|.-|++=-.|..+.-+.- ....|+||+|
T Consensus 238 g-Wi~V~p~pgalvVNiGD~l~~~TnG~~kS~~HRVv~~~~~R~Sia~ 284 (331)
T 1odm_A 238 G-YQDIEADDTGYLINCGSYMAHLTNNYYKAPIHRVKWVNAERQSLPF 284 (331)
T ss_dssp E-EEECCCCTTSEEEEECHHHHHHTTTSSCCCCEEEECCCSCEEEEEE
T ss_pred C-eEECCCCCCeEEEEccHHHHHHhCCEeeCCCceeCCCCCCEEEEEE
Confidence 6 889999999999999999999987766541 2567999998
No 27
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=37.63 E-value=16 Score=27.40 Aligned_cols=38 Identities=24% Similarity=0.571 Sum_probs=24.7
Q ss_pred CcccccceeeccccccccCcccccccccccccccccCCCCcccccCccc
Q psy4937 5 NFCGCKGVRTCIKCEQEFGYENKNIVEFTEETYIYCPHCNKAWQGSDLY 53 (356)
Q Consensus 5 ~~c~ckg~r~c~~ce~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 53 (356)
.||.| |-.+|..|-...... .-..||.|.++....++.
T Consensus 29 ~p~~C-GH~fC~~Cl~~~~~~----------~~~~CP~CR~~~~~~~~~ 66 (78)
T 1e4u_A 29 FPCTC-GYQICRFCWHRIRTD----------ENGLCPACRKPYPEDPAV 66 (78)
T ss_dssp CSSTT-SCCCCHHHHHHHTTS----------SCSBCTTTCCBCSSCSSC
T ss_pred cccCC-CCCcCHHHHHHHHhc----------CCCCCCCCCCccCCCchh
Confidence 45666 777888887543221 225799999986555554
No 28
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=34.86 E-value=14 Score=32.47 Aligned_cols=11 Identities=27% Similarity=0.368 Sum_probs=9.8
Q ss_pred ccccccCCCCc
Q psy4937 35 ETYIYCPHCNK 45 (356)
Q Consensus 35 ~~~~~~~~~~~ 45 (356)
..|.-||+|||
T Consensus 40 ~~Y~ACp~CnK 50 (172)
T 3u50_C 40 LYYYRCTCQGK 50 (172)
T ss_dssp CEEEECTTSCC
T ss_pred EEehhchhhCC
Confidence 46999999999
No 29
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=32.59 E-value=14 Score=34.34 Aligned_cols=12 Identities=33% Similarity=0.902 Sum_probs=10.3
Q ss_pred cccccccCCCCc
Q psy4937 34 EETYIYCPHCNK 45 (356)
Q Consensus 34 ~~~~~~~~~~~~ 45 (356)
+...+|||+|+.
T Consensus 31 v~~n~yCPnCG~ 42 (257)
T 4esj_A 31 VYRQSYCPNCGN 42 (257)
T ss_dssp HHHHCCCTTTCC
T ss_pred HHHCCcCCCCCC
Confidence 667899999997
No 30
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=32.07 E-value=25 Score=24.72 Aligned_cols=15 Identities=20% Similarity=0.939 Sum_probs=12.0
Q ss_pred ccceeeccccccccc
Q psy4937 83 KETYVYCPHCNKAWQ 97 (356)
Q Consensus 83 ~~~~~~c~~c~~~~~ 97 (356)
...|.-|..|+..|.
T Consensus 40 ~T~fy~C~~Cg~~w~ 54 (57)
T 1qyp_A 40 STIFYKCTKCGHTWR 54 (57)
T ss_dssp SEEEEEESSSCCEEE
T ss_pred CcEEEEcCCCCCEec
Confidence 447888999998764
No 31
>1p1p_A AA-conotoxin PIVA; neurotoxin, acetylcholine receptor binding, transcription regulation; HET: HYP; NMR {Conus purpurascens} SCOP: j.30.1.3
Probab=31.91 E-value=12 Score=22.56 Aligned_cols=8 Identities=38% Similarity=0.920 Sum_probs=6.4
Q ss_pred Ccccccce
Q psy4937 5 NFCGCKGV 12 (356)
Q Consensus 5 ~~c~ckg~ 12 (356)
-||+|||.
T Consensus 12 hpc~c~~r 19 (26)
T 1p1p_A 12 HPCSCKDR 19 (26)
T ss_dssp CTTTSTTC
T ss_pred cccccCCC
Confidence 58999974
No 32
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=31.89 E-value=20 Score=27.76 Aligned_cols=7 Identities=43% Similarity=1.559 Sum_probs=4.1
Q ss_pred ecccccc
Q psy4937 88 YCPHCNK 94 (356)
Q Consensus 88 ~c~~c~~ 94 (356)
|||.|+.
T Consensus 33 fCPeCgq 39 (81)
T 2jrp_A 33 LCPDCRQ 39 (81)
T ss_dssp ECSSSCS
T ss_pred cCcchhh
Confidence 6666653
No 33
>4diq_A Lysine-specific demethylase NO66; structural genomics, structural genomics consortium, SGC, HI demethylase, oxidoreductase; HET: PD2; 2.40A {Homo sapiens}
Probab=31.76 E-value=3.7e+02 Score=27.19 Aligned_cols=101 Identities=12% Similarity=0.113 Sum_probs=55.4
Q ss_pred eeeeEecCCCCCCccCCCCCcccccCceEEEecCCceEEEEeecCCCCCCcCCCCCccccCCCCCCcccccccccccccc
Q psy4937 200 QCTLEYNSENGSSIDNHIDDCWIWGERIVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKKYPDQKSTIVNDLSLNEK 279 (356)
Q Consensus 200 q~~leY~pg~G~~I~pHvDd~~~~Ge~IaslSLgs~~vm~f~~~~~~~~~~~l~~~~~~~~~~e~d~k~~~~~~~~~~~~ 279 (356)
++++.-.|+++.++.||.|+.. ++.+=+-+...+++.+.......+ +..... +.
T Consensus 165 ~~N~Y~tp~Gs~g~~pH~D~~D-----vFllQv~G~KrWrL~~P~~~~~~l-----p~~~~~-------------~~--- 218 (489)
T 4diq_A 165 GSNVYLTPPNSQGFAPHYDDIE-----AFVLQLEGRKLWRVYRPRAPTEEL-----ALTSSP-------------NF--- 218 (489)
T ss_dssp EEEEEEECSSBCCSCCBCCSSE-----EEEEEEEECEEEEEECCSSGGGTT-----CSSCCC-------------CC---
T ss_pred cceEEecCCCcccccCccCCcc-----eEEEEEeeEEEEEEeCCCCccccC-----CCcccc-------------cC---
Confidence 4555666655445889999853 445666666777776532210000 000000 00
Q ss_pred cccccccccCCceEEEEecCCCeEEEecchhhcccccccccCCCCCCeEEEEecccC
Q psy4937 280 STDSIVNETLSSVVIRIPMPARSLLVLWGEARYEWQHCVLRSDVIGRRVCIAYREFT 336 (356)
Q Consensus 280 ~~~~~~~~~~~~~~v~I~Lp~rSLLVMsG~ARy~W~H~I~~~dvr~rRVSLTfR~l~ 336 (356)
. .... . .....+.|.+|.+|-+-- .|-|.+...+ .+.-++|||--..
T Consensus 219 ~---~~~~-~-~p~~e~~L~pGDvLYiP~----g~~H~~~s~~-~~~SlhlTi~~~~ 265 (489)
T 4diq_A 219 S---QDDL-G-EPVLQTVLEPGDLLYFPR----GFIHQAECQD-GVHSLHLTLSTYQ 265 (489)
T ss_dssp C---GGGC-C-CCSEEEEECTTCEEEECT----TCEEEEEBCS-SCCEEEEEEEECT
T ss_pred C---cccc-c-CcceEEEECCCCEEEECC----CCceEEEecC-CCceEEEeecccC
Confidence 0 0000 1 346789999999998853 3667777653 2556788876543
No 34
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=30.75 E-value=22 Score=26.47 Aligned_cols=15 Identities=20% Similarity=0.244 Sum_probs=12.4
Q ss_pred ccceeeccccccccc
Q psy4937 83 KETYVYCPHCNKAWQ 97 (356)
Q Consensus 83 ~~~~~~c~~c~~~~~ 97 (356)
.....+|+.|+.+||
T Consensus 25 ~~g~LvC~~c~~~YP 39 (67)
T 2jny_A 25 SEQLLVNERLNLAYR 39 (67)
T ss_dssp TTTEEEETTTTEEEE
T ss_pred CCCEEEcCCCCcccc
Confidence 345678999999998
No 35
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis}
Probab=29.39 E-value=75 Score=29.22 Aligned_cols=42 Identities=12% Similarity=0.179 Sum_probs=33.9
Q ss_pred ceEEEEecCCCeEEEecchhhcccccccccCC-----------CCCCeEEEEe
Q psy4937 291 SVVIRIPMPARSLLVLWGEARYEWQHCVLRSD-----------VIGRRVCIAY 332 (356)
Q Consensus 291 ~~~v~I~Lp~rSLLVMsG~ARy~W~H~I~~~d-----------vr~rRVSLTf 332 (356)
+..+.|+-.+++++|.-|++=..|.-+.-+.- ....|+||.|
T Consensus 198 g~W~~V~p~pg~~vVNiGD~l~~~Tng~~kS~~HRVv~~~~~~~~~~R~Si~~ 250 (280)
T 3on7_A 198 GSWLDVPSDFGNIIINIGDMLQEASDGYFPSTSHRVINPEGTDKTKSRISLPL 250 (280)
T ss_dssp SCEEECCCCTTCEEEEECHHHHHHTTTSSCCCCEEEECCTTCCTTSCEEECCE
T ss_pred CCEEECcCCCCEEEEEcChHHHHHhCCcccCCCceEeCCCCCCCCCCeEEEEE
Confidence 56888999999999999999999986665531 1347999998
No 36
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=28.60 E-value=20 Score=28.80 Aligned_cols=10 Identities=30% Similarity=1.035 Sum_probs=6.3
Q ss_pred ceeecccccc
Q psy4937 85 TYVYCPHCNK 94 (356)
Q Consensus 85 ~~~~c~~c~~ 94 (356)
.--|||.|+.
T Consensus 60 ~~a~CPdC~q 69 (101)
T 2jne_A 60 MKALCPDCHQ 69 (101)
T ss_dssp EEEECTTTCS
T ss_pred ccccCcchhh
Confidence 3457777774
No 37
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=26.99 E-value=17 Score=28.11 Aligned_cols=15 Identities=20% Similarity=0.554 Sum_probs=11.1
Q ss_pred cceeecccccccccc
Q psy4937 84 ETYVYCPHCNKAWQG 98 (356)
Q Consensus 84 ~~~~~c~~c~~~~~g 98 (356)
..-.-|+.|+..+.|
T Consensus 43 tGiW~C~~Cg~~~ag 57 (83)
T 1vq8_Z 43 TGIWQCSYCDYKFTG 57 (83)
T ss_dssp TTEEEETTTCCEEEC
T ss_pred CCeEECCCCCCEecC
Confidence 345679999998764
No 38
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=25.90 E-value=45 Score=27.24 Aligned_cols=36 Identities=14% Similarity=0.309 Sum_probs=21.1
Q ss_pred ceeeccccccccCcccccccccccccccccCCCCccccc
Q psy4937 11 GVRTCIKCEQEFGYENKNIVEFTEETYIYCPHCNKAWQG 49 (356)
Q Consensus 11 g~r~c~~ce~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 49 (356)
++++|..|..---..... ........|+.|+.-..+
T Consensus 3 ~~~FCp~CgnlL~~~~~~---~~~~~~~~C~~C~y~~~~ 38 (122)
T 1twf_I 3 TFRFCRDCNNMLYPREDK---ENNRLLFECRTCSYVEEA 38 (122)
T ss_dssp CCCBCSSSCCBCEEEEET---TTTEEEEECSSSSCEEEC
T ss_pred CCCcccccCccCcccccC---cCCCCEEECCcCCCeeec
Confidence 578999998433222100 012357899999886433
No 39
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=25.72 E-value=31 Score=31.95 Aligned_cols=13 Identities=31% Similarity=0.930 Sum_probs=9.6
Q ss_pred cccceeecccccc
Q psy4937 82 TKETYVYCPHCNK 94 (356)
Q Consensus 82 ~~~~~~~c~~c~~ 94 (356)
+--+-.|||.|.+
T Consensus 256 ~gR~t~~CP~CQ~ 268 (268)
T 1k82_A 256 AQRATFYCRQCQK 268 (268)
T ss_dssp TTEEEEECTTTCC
T ss_pred CCCceEECCCCCC
Confidence 4457779999973
No 40
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=25.57 E-value=34 Score=28.66 Aligned_cols=36 Identities=25% Similarity=0.650 Sum_probs=22.4
Q ss_pred ceeeccccccccCccc--cccccccccc----------ccccCCCCcc
Q psy4937 11 GVRTCIKCEQEFGYEN--KNIVEFTEET----------YIYCPHCNKA 46 (356)
Q Consensus 11 g~r~c~~ce~~~~~~~--~~~~~~~~~~----------~~~~~~~~~~ 46 (356)
+.-.|..|...+.... ..+-+-..+. +..||.|+-+
T Consensus 69 ~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~ 116 (139)
T 3a43_A 69 AVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSH 116 (139)
T ss_dssp CEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCC
T ss_pred CcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCC
Confidence 4668999987766543 1122222333 7889999875
No 41
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=25.47 E-value=36 Score=31.54 Aligned_cols=14 Identities=21% Similarity=0.712 Sum_probs=10.6
Q ss_pred cccceeeccccccc
Q psy4937 82 TKETYVYCPHCNKA 95 (356)
Q Consensus 82 ~~~~~~~c~~c~~~ 95 (356)
+--+-.|||.|.+.
T Consensus 251 ~gR~t~~CP~CQ~~ 264 (266)
T 1ee8_A 251 AGRGTHFCPTCQGE 264 (266)
T ss_dssp SSCEEEECTTTTTC
T ss_pred CCCceEECCCCCCC
Confidence 44577799999964
No 42
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=24.37 E-value=35 Score=31.63 Aligned_cols=13 Identities=23% Similarity=0.789 Sum_probs=9.8
Q ss_pred cccceeecccccc
Q psy4937 82 TKETYVYCPHCNK 94 (356)
Q Consensus 82 ~~~~~~~c~~c~~ 94 (356)
.--+-.|||.|.+
T Consensus 258 ~gR~t~~CP~CQ~ 270 (271)
T 2xzf_A 258 AGRGTHFCPVCQQ 270 (271)
T ss_dssp TTEEEEECTTTSC
T ss_pred CCCceEECCCCCC
Confidence 4457779999984
No 43
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=24.24 E-value=40 Score=28.83 Aligned_cols=46 Identities=20% Similarity=0.568 Sum_probs=24.2
Q ss_pred cccccccCCCCcccccCccccccCCCCCCCCccccccccccccccccccccceeeccccccccccCccccccCCCCC
Q psy4937 34 EETYIYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIKEDFLTSQTKETYVYCPHCNKAWQGSDLYAYQSHPNH 110 (356)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~~~~g~~~~~~~~~~~h 110 (356)
...||.|+.|+.| ++ .++ -.+.--+.-|-.|+.. ...+..|.|-+|
T Consensus 101 I~~yVlC~~C~sP-------------dT-----~L~----------k~~r~~~l~C~ACGa~---~~V~~~k~~~~~ 146 (148)
T 2d74_B 101 IKEYVICPVCGSP-------------DT-----KII----------KRDRFHFLKCEACGAE---TPIQHLLEHHHH 146 (148)
T ss_dssp HHHHSSCSSSCCT-------------TC-----CCC----------BSSSSBCCCCSSSCCC---CCCCC-------
T ss_pred HHHEEECCCCCCc-------------Cc-----EEE----------EeCCEEEEEecCCCCC---ccccchhhcccc
Confidence 5789999999984 11 111 1133466778888854 345666665544
No 44
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=22.41 E-value=33 Score=29.75 Aligned_cols=11 Identities=55% Similarity=1.132 Sum_probs=9.5
Q ss_pred ccccccCC--CCc
Q psy4937 35 ETYIYCPH--CNK 45 (356)
Q Consensus 35 ~~~~~~~~--~~~ 45 (356)
..|.-||+ |||
T Consensus 41 ~~Y~aC~~~~CnK 53 (181)
T 1l1o_C 41 CMYQACPTQDCNK 53 (181)
T ss_dssp TEEEBCCSTTCCC
T ss_pred EEECCCCchhcCC
Confidence 45889999 999
No 45
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=21.99 E-value=64 Score=26.94 Aligned_cols=35 Identities=14% Similarity=0.324 Sum_probs=21.7
Q ss_pred ceeeccccccccCcccccccccccccccccCCCCcccc
Q psy4937 11 GVRTCIKCEQEFGYENKNIVEFTEETYIYCPHCNKAWQ 48 (356)
Q Consensus 11 g~r~c~~ce~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 48 (356)
++|+|..|..---+..... .......|+.|.--..
T Consensus 23 ~~~FCPeCgNmL~pked~~---~~~l~~~CrtCgY~~~ 57 (133)
T 3qt1_I 23 TFRFCRDCNNMLYPREDKE---NNRLLFECRTCSYVEE 57 (133)
T ss_dssp CCCBCTTTCCBCBCCBCTT---TCCBCCBCSSSCCBCC
T ss_pred CCeeCCCCCCEeeECccCC---CceeEEECCCCCCcEE
Confidence 6899999996544332100 1134578999987633
No 46
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=21.06 E-value=36 Score=31.00 Aligned_cols=14 Identities=43% Similarity=1.075 Sum_probs=10.9
Q ss_pred eeeccccccccccC
Q psy4937 86 YVYCPHCNKAWQGS 99 (356)
Q Consensus 86 ~~~c~~c~~~~~g~ 99 (356)
-.-||.|+..|++-
T Consensus 217 ~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 217 EPRCPHCNDYWPHE 230 (238)
T ss_dssp SCBCTTTCCBCCSC
T ss_pred CCCCCCCCCCCCCC
Confidence 34699999988755
No 47
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=20.95 E-value=12 Score=29.34 Aligned_cols=16 Identities=19% Similarity=0.524 Sum_probs=12.5
Q ss_pred cccceeeccccccccc
Q psy4937 82 TKETYVYCPHCNKAWQ 97 (356)
Q Consensus 82 ~~~~~~~c~~c~~~~~ 97 (356)
.....+.|-.|+.-|.
T Consensus 43 ~~~g~l~C~~Cg~~~~ 58 (85)
T 1wii_A 43 RNTGVISCTVCLEEFQ 58 (85)
T ss_dssp TTEEEEEESSSCCEEE
T ss_pred CCEEEEEcccCCCeEE
Confidence 4568899999997665
No 48
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=20.87 E-value=49 Score=26.64 Aligned_cols=27 Identities=19% Similarity=0.432 Sum_probs=18.8
Q ss_pred ceeeccccccccCccccccccccccccc-ccCCCCcc
Q psy4937 11 GVRTCIKCEQEFGYENKNIVEFTEETYI-YCPHCNKA 46 (356)
Q Consensus 11 g~r~c~~ce~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 46 (356)
+.-.|..|...+.... .+. .||.|+.+
T Consensus 72 ~~~~C~~CG~~~e~~~---------~~~~~CP~Cgs~ 99 (119)
T 2kdx_A 72 VELECKDCSHVFKPNA---------LDYGVCEKCHSK 99 (119)
T ss_dssp CEEECSSSSCEECSCC---------STTCCCSSSSSC
T ss_pred ceEEcCCCCCEEeCCC---------CCCCcCccccCC
Confidence 5567889987765532 245 79999875
No 49
>3fxd_A Protein ICMQ; helix bundle, helix-turn-helix, unknown function; 2.10A {Legionella pneumophila} PDB: 3fxe_A
Probab=20.23 E-value=70 Score=23.11 Aligned_cols=24 Identities=50% Similarity=0.901 Sum_probs=18.2
Q ss_pred CCCCCHHHHHHHHHHhhc----CCCCcc
Q psy4937 124 EDFLSEAETEDVMKQLDD----LPWDKS 147 (356)
Q Consensus 124 ~dFIS~~Ee~~Ll~~id~----~pW~~s 147 (356)
.|=+|+++.+.++..+|+ -||+.|
T Consensus 2 kd~lt~eq~~aILkaLdeaIe~GPWe~S 29 (57)
T 3fxd_A 2 KDQLSDEQKETILKALNDAIEKGPWDKS 29 (57)
T ss_dssp --CCCHHHHHHHHHHHHHHHHHSCTTSC
T ss_pred cchhhHHHHHHHHHHHHHHHHcCCchHH
Confidence 356899999999988765 799965
No 50
>2rdq_A 1-deoxypentalenic acid 11-beta hydroxylase; Fe(II ketoglutarate dependent hydroxylase...; double stranded barrel helix, dioxygenase; HET: AKG; 1.31A {Streptomyces avermitilis} PDB: 2rdn_A* 2rdr_A* 2rds_A*
Probab=20.18 E-value=69 Score=28.76 Aligned_cols=44 Identities=18% Similarity=0.228 Sum_probs=0.0
Q ss_pred CceEEEEecCCCeEEEecchhhcccccccccC---CCCCCeEEEEecccCC
Q psy4937 290 SSVVIRIPMPARSLLVLWGEARYEWQHCVLRS---DVIGRRVCIAYREFTA 337 (356)
Q Consensus 290 ~~~~v~I~Lp~rSLLVMsG~ARy~W~H~I~~~---dvr~rRVSLTfR~l~~ 337 (356)
....+.+.+++|+++|+.+..= |+-.+. +.|..|+++.+|...+
T Consensus 207 ~~~~v~~~~~aGdv~lf~~~~~----H~s~~N~s~~~R~~R~s~~~~~~~~ 253 (288)
T 2rdq_A 207 DEHLLHSPMEPGDILLFHAHMC----HKSIPNLSKDPRLMRMSMDTRVQPA 253 (288)
T ss_dssp TSCEECCCCCTTCEEEEETTCC----EEEECCCCCTTCCCEEEEEEEEEET
T ss_pred cCceeecccCCCCEEEEeCCce----ecCCCCCCCCccceEEEEEEEEecC
Done!