RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4937
(356 letters)
>gnl|CDD|225687 COG3145, AlkB, Alkylated DNA repair protein [DNA replication,
recombination, and repair].
Length = 194
Score = 32.8 bits (75), Expect = 0.15
Identities = 9/36 (25%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 294 IRIPMPARSLLVLWGEARYEWQHCVL-RSDVIGRRV 328
+R+ + ++V+ G +R W H + S + G+R+
Sbjct: 157 LRLRLEHGDVVVMGGPSRLAWHHIIPKTSRLTGQRI 192
>gnl|CDD|234471 TIGR04104, cxxc_20_cxxc, cxxc_20_cxxc protein. This small,
uncommon, poorly conserved protein is found primarily
in the Firmicutes. It features are pair of CxxC motifs
separated by about 20 amino acids, followed by a highly
hydrophobic region of about 45 amino acids. It has no
conserved gene neighborhood, and its function is
unknown.
Length = 94
Score = 30.4 bits (69), Expect = 0.37
Identities = 9/32 (28%), Positives = 14/32 (43%)
Query: 14 TCIKCEQEFGYENKNIVEFTEETYIYCPHCNK 45
C C ++F Y+ F+ I CP+C
Sbjct: 2 ICKNCNEKFSYKELLKSLFSLYRPIKCPNCGT 33
>gnl|CDD|225576 COG3033, TnaA, Tryptophanase [Amino acid transport and metabolism].
Length = 471
Score = 31.3 bits (71), Expect = 0.93
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 19 EQEFGYENKNIVEFTEETYIYCPHC 43
++E GY + +I E E Y Y C
Sbjct: 238 QREPGYRDWSIEEIAREMYSYADGC 262
>gnl|CDD|222204 pfam13532, 2OG-FeII_Oxy_2, 2OG-Fe(II) oxygenase superfamily.
Length = 190
Score = 30.3 bits (69), Expect = 1.2
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 7/47 (14%)
Query: 293 VIRIPMPARSLLVLWGEARYEWQHCVLR------SDVIGRRVCIAYR 333
I +P+ + +LV+ G +R + H V R + G R+ + +R
Sbjct: 145 TIALPLESGDVLVMGGPSRLAY-HGVPRIKPGTHPLLGGGRINLTFR 190
>gnl|CDD|224565 COG1651, DsbG, Protein-disulfide isomerase [Posttranslational
modification, protein turnover, chaperones].
Length = 244
Score = 30.2 bits (68), Expect = 1.2
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 20/71 (28%)
Query: 28 NIVEFTEETYIYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGV-YIKEDFLTSQTKETY 86
+VEF + CP+C +A+ +L K D G V + +F
Sbjct: 87 TVVEFFD---YTCPYCKEAFP--ELKK---------KYIDDGKVRLVLREFPFLDPA--- 129
Query: 87 VYCPHCNKAWQ 97
CP+C +A Q
Sbjct: 130 --CPYCRRAAQ 138
>gnl|CDD|99741 cd00617, Tnase_like, Tryptophanase family (Tnase). This family
belongs to pyridoxal phosphate (PLP)-dependent aspartate
aminotransferase superfamily (fold I). The major groups
in this CD correspond to tryptophanase (Tnase) and
tyrosine phenol-lyase (TPL). Tnase and TPL are active as
tetramers and catalyze beta-elimination reactions. Tnase
catalyzes degradation of L-tryptophan to yield indole,
pyruvate and ammonia and TPL catalyzes degradation of
L-tyrosine to yield phenol, pyruvate and ammonia.
Length = 431
Score = 29.2 bits (66), Expect = 3.8
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 16 IKCEQEFGYENKNIVEFTEETYIYCPHC 43
IK E+E GY +K+I E E + Y C
Sbjct: 203 IK-EREEGYRDKSIAEIAREMFSYADGC 229
>gnl|CDD|131667 TIGR02618, tyr_phenol_ly, tyrosine phenol-lyase. This model
describes a group of tyrosine phenol-lyase (4.1.99.2)
(beta-tyrosinase), a pyridoxal-phosphate enzyme closely
related to tryptophanase (4.1.99.1) (see model
TIGR02617). Both belong to the beta-eliminating lyase
family (pfam01212) [Energy metabolism, Amino acids and
amines].
Length = 450
Score = 28.3 bits (63), Expect = 6.4
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 20/73 (27%)
Query: 19 EQEFGYENKNIVEFTEETYIYCPHCNKAWQGSDLYAYQSHPNHSGKS---FDIGG-VYIK 74
E+E GYE+K+I E +E Y C SGK +IGG + +
Sbjct: 223 EREQGYEDKSIAEILKEMMSYADGCTM----------------SGKKDCLVNIGGFLCMN 266
Query: 75 EDFLTSQTKETYV 87
+D + KE V
Sbjct: 267 DDEMFQSAKELVV 279
>gnl|CDD|225729 COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility
and secretion / Intracellular trafficking and
secretion].
Length = 835
Score = 28.4 bits (64), Expect = 6.5
Identities = 13/73 (17%), Positives = 22/73 (30%), Gaps = 10/73 (13%)
Query: 221 WIWGERIVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKKYPDQKSTIVN---DLSLN 277
G ++ L S Y+N NL Y + S ++ S
Sbjct: 502 QSLGSGYGSLYL---SGSYQDYWNASGRSRNLQ---LGYSNSFGR-ISYSLSLSRSRSEY 554
Query: 278 EKSTDSIVNETLS 290
+ +D V +S
Sbjct: 555 DGDSDRQVYLNIS 567
>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase.
Length = 474
Score = 28.2 bits (63), Expect = 7.8
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 8 GCKGVRTCIKCEQEFGYENKNIVEFTEETYIYCPHC 43
G +GV T IK +++GYE K I + E + C C
Sbjct: 141 GAEGVETAIKLARKWGYEKKGIPK-NEAIIVSCCGC 175
>gnl|CDD|215513 PLN02951, PLN02951, Molybderin biosynthesis protein CNX2.
Length = 373
Score = 27.8 bits (62), Expect = 8.7
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 3/43 (6%)
Query: 52 LYAYQSHPNHSGKSFDIGGVYIKEDFLTSQTKETYVYCPHCNK 94
L Q HP + K+F I G F+TS T+ +C CN+
Sbjct: 266 LKRLQDHPTDTAKNFRIDGHCGSVSFITSMTEH---FCAGCNR 305
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.135 0.430
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,284,512
Number of extensions: 1577438
Number of successful extensions: 1379
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1377
Number of HSP's successfully gapped: 18
Length of query: 356
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 258
Effective length of database: 6,590,910
Effective search space: 1700454780
Effective search space used: 1700454780
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (26.8 bits)