RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4937
(356 letters)
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics,
PSI-biology, northeast structural genom consortium,
NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Length = 345
Score = 84.8 bits (209), Expect = 1e-18
Identities = 37/210 (17%), Positives = 79/210 (37%), Gaps = 57/210 (27%)
Query: 119 GVYIKEDFLSEAETEDVMKQLDDLPWD------KSQSGRRKQNFGPKCNFKKQKIKLGDF 172
G+ + E+ +S E + +++ +D KS RR ++FG + +++ +
Sbjct: 112 GLMVVEEIISSEEEKMLLESVDWTEDTDNQNSQKSLKHRRVKHFGYEFHYENNNVDKDKP 171
Query: 173 --QGFPACTKFIQDRFHQEDVLSHFQTIEQCTLEYNSENGSSIDNHIDDCWIWGERIVTV 230
G P + +++ ++ + + + +Y E G I HID + + IV++
Sbjct: 172 LSGGLPDICESFLEKWLRKGYI-KHKPDQMTINQY--EPGQGIPAHIDTHSAFEDEIVSL 228
Query: 231 NLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKKYPDQKSTIVNDLSLNEKSTDSIVNETLS 290
+L + V+ + +G +
Sbjct: 229 SLGSEIVMDFKHPDGIA------------------------------------------- 245
Query: 291 SVVIRIPMPARSLLVLWGEARYEWQHCVLR 320
+ + +P RSLLV+ GE+RY W H +
Sbjct: 246 ---VPVMLPRRSLLVMTGESRYLWTHGITC 272
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA
repair, demethylase, beta jellyroll; HET: AKG; 1.50A
{Homo sapiens} SCOP: b.82.2.10
Length = 238
Score = 56.8 bits (136), Expect = 1e-09
Identities = 31/230 (13%), Positives = 68/230 (29%), Gaps = 52/230 (22%)
Query: 116 DIGGVYIKEDFLSEAETEDVMKQL-DDLPWD--------KSQSGRRKQNFGPKCNFKKQK 166
+ V + F+ E + +++QL D+PW + R + + + +
Sbjct: 38 GVSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGELPYTYSR 97
Query: 167 IKLGDFQGFPACTKFIQDRFHQEDVLSHFQTIEQCTLEYNSENGSSIDNHIDD--CWIWG 224
I + + + +++R + T S+D H DD
Sbjct: 98 ITMEPNPHWHPVLRTLKNRIEEN----TGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRC 153
Query: 225 ERIVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKKYPDQKSTIVNDLSLNEKSTDSI 284
I +++ + +K
Sbjct: 154 PIIASLSFGATR------------------------------------TFEMRKKPPPEE 177
Query: 285 VNETLSSVVIRIPMPARSLLVLWGEARYEWQHCVL-RSDVIGRRVCIAYR 333
+ ++IP+ +LL++ G + +WQH V RV + +R
Sbjct: 178 NGDYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFR 227
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 44.1 bits (103), Expect = 6e-05
Identities = 46/383 (12%), Positives = 100/383 (26%), Gaps = 115/383 (30%)
Query: 25 ENKNIVE-FTEET------YIYCP---HCNKAWQGSDLYAYQSHPNH-SGKSFDIGGVYI 73
+ + +V+ F EE ++ P + + +Y Q + + F V
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 74 KEDF------LTSQTKETYVYCPH----CNKAWQGSDLYAYQSHPNHSGKSFDIGGVY-I 122
+ + L V K W D S+ F ++ +
Sbjct: 134 LQPYLKLRQALLELRPAKNVLI-DGVLGSGKTWVALD--VCLSYKVQCKMDF---KIFWL 187
Query: 123 KEDFLSEAETEDVMKQLDDLPW--DKSQSGRRKQNFGPKCNFKKQKIKLGDFQGFPACTK 180
+ E V++ L L + D + + R + K + +L +
Sbjct: 188 N--LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL---------RR 236
Query: 181 FIQDRFHQE------DVLSHFQTIE----QCTLEYNSENGSSID------------NHID 218
++ + ++ +V + + C + + D +H
Sbjct: 237 LLKSKPYENCLLVLLNV-QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 219 DC------------WIWG------ERIVTVN-----LIG----DSVLTLTYYNGDSNKYN 251
++ ++T N +I D + T + N
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWK----HVN 351
Query: 252 LNSPCFSYQKKYPDQKSTIVNDLSLNEKSTDSIVNETLSSVVIR--IPMPARSLLVLWGE 309
D+ +TI+ + SLN V +P L ++W +
Sbjct: 352 C------------DKLTTII-ESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD 398
Query: 310 ARYE-----WQHCVLRSDVIGRR 327
S V +
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQP 421
Score = 31.4 bits (70), Expect = 0.61
Identities = 16/110 (14%), Positives = 35/110 (31%), Gaps = 23/110 (20%)
Query: 119 GVYIKEDFLS----EAETEDVMKQLDDLPWDKSQSGRRKQNFGPKCNFKKQKIKLGDFQG 174
+I LS + DVM ++ L S KQ K+ I +
Sbjct: 384 SAHIPTILLSLIWFDVIKSDVMVVVNKL---HKYSLVEKQP-------KESTISIPSIY- 432
Query: 175 FPACTKFIQDRFHQEDVLS-HFQTIEQCTLEYNSENGSSIDNHIDDCWIW 223
++ + E+ + H ++ + ++ I ++D +
Sbjct: 433 -------LELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYS 475
Score = 31.0 bits (69), Expect = 0.72
Identities = 22/136 (16%), Positives = 42/136 (30%), Gaps = 42/136 (30%)
Query: 23 GYENKNIVEFTEETYIYCPHCNKAWQGSDLYAYQSH---PNHSGKSFDIGGVYIKEDFLT 79
+++ +++ + Y Y H + H H + V++ FL
Sbjct: 458 TFDSDDLIPPYLDQYFYS-H----------IGH--HLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 80 SQTKETYVYCPHCNKAWQGS--------DLYAYQSH-----PNHSGKSFDIGGVYIKEDF 126
+ + H + AW S L Y+ + P + I DF
Sbjct: 505 QKIR-------HDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI------LDF 551
Query: 127 LSEAETEDVMKQLDDL 142
L + E + + DL
Sbjct: 552 LPKIEENLICSKYTDL 567
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA
complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma,
oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo
sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A*
3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A*
3btx_A* 3bu0_A* 3btz_A*
Length = 204
Score = 41.7 bits (97), Expect = 1e-04
Identities = 28/233 (12%), Positives = 61/233 (26%), Gaps = 59/233 (25%)
Query: 118 GGVYIKEDFLSEAETEDVMKQL-DDLPWDKSQSGRRKQN------------FG-PKCNFK 163
G +AE +++ ++L ++ + R + +G +
Sbjct: 10 GLDSSYTVLFGKAEADEIFQELEKEVEYFTGALARVQVFGKWHSVPRKQATYGDAGLTYT 69
Query: 164 KQKIKLGDFQGFPACTKFIQDRFHQEDVLSHFQTIEQCTLEYNSENGSSIDNHIDD--CW 221
+ L ++ ++ Y + I H DD
Sbjct: 70 FSGLTLSPKP----WIPVLERIRDHVSGVTGQTFNFVLINRYKDGS-DHICEHRDDEREL 124
Query: 222 IWGERIVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKKYPDQKSTIVNDLSLNEKST 281
G I +V+ + + +
Sbjct: 125 APGSPIASVSFGASRDFVFRHKDSRGKSPSRRVA-------------------------- 158
Query: 282 DSIVNETLSSVVIRIPMPARSLLVLWGEARYEWQHCV-LRSDVIGRRVCIAYR 333
V+R+P+ SLL++ W H + +R V+ RV + +R
Sbjct: 159 -----------VVRLPLAHGSLLMMNHPTNTHWYHSLPVRKKVLAPRVNLTFR 200
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.1 bits (88), Expect = 0.005
Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 42/157 (26%)
Query: 214 DNHIDDCWIWGERIVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKKYPDQKSTIVND 273
DNH D + G I+ +++ ++ + LT + G + + Y + D
Sbjct: 1650 DNHFKDTY--GFSIL--DIVINNPVNLTIHFGGEKGKRIR-------ENYSAMIFETIVD 1698
Query: 274 LSLNEKSTDSIVNETLSSVVIRIPM----------PARSLLVLWGEARYEWQHCVLRSDV 323
L + +NE +S R PA L L +A +E L+S
Sbjct: 1699 GKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA---LTLMEKAAFE----DLKSK- 1750
Query: 324 IGRRVCIAYR------EFTAPYMNNEATASV--FEKA 352
G A E+ A + A V E
Sbjct: 1751 -GLIPADATFAGHSLGEYAALA----SLADVMSIESL 1782
Score = 28.9 bits (64), Expect = 3.8
Identities = 13/87 (14%), Positives = 31/87 (35%), Gaps = 25/87 (28%)
Query: 80 SQTK----ETYVYCPHCNKAWQGSDLYAYQSH-----------PNHSGKSFD-IGGVYIK 123
SQ + + Y W +D + ++ P + F G I+
Sbjct: 1626 SQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIR 1685
Query: 124 EDFLS---------EAETEDVMKQLDD 141
E++ + + +TE + K++++
Sbjct: 1686 ENYSAMIFETIVDGKLKTEKIFKEINE 1712
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA
damage, DNA repair, iron, M binding, oxidoreductase;
HET: AKG; 1.40A {Escherichia coli} PDB: 2fd8_A* 2fdg_A*
2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A*
3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A*
3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ...
Length = 211
Score = 34.6 bits (79), Expect = 0.031
Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 7/92 (7%)
Query: 248 NKYNLNSPCFSYQKKYPDQKSTIVNDLSLNEKSTDSIVNETLSSVVIRIPMPARSLLVLW 307
N+Y + +Q K + +SL + + + R+ + ++V
Sbjct: 110 NRYAPGAKLSLHQDKDEPDLRAPIVSVSLGLPAIFQFGGLKRNDPLKRLLLEHGDVVVWG 169
Query: 308 GEARYEWQHCVLR------SDVIGRRVCIAYR 333
GE+R + H + I R + +R
Sbjct: 170 GESRL-FYHGIQPLKAGFHPLTIDCRYNLTFR 200
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 30.4 bits (68), Expect = 0.63
Identities = 10/32 (31%), Positives = 12/32 (37%), Gaps = 4/32 (12%)
Query: 12 VRTCIKCEQEFGYENKNIVEFTEETYIYCPHC 43
V TC +C IVE E + C C
Sbjct: 21 VLTCPEC----KVYPPKIVERFSEGDVVCALC 48
>2oxg_Z SOXZ protein; immunoglobulin-like beta-sandwich fold, transport
protein; 1.40A {Paracoccus denitrificans} PDB: 2ox5_Z
2oxh_Z*
Length = 108
Score = 28.9 bits (65), Expect = 0.79
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 106 SHPNHSGKSFDIGGVYIKEDFLSEAETEDVMKQLDDLPWDKSQSGRRKQNFGPKCNFKKQ 165
SH SG+ D G I ++ E + D+ D + S N P F +
Sbjct: 27 SHKMESGQRKDADGKLIPRSIINRFTCELNGVNVVDVAIDPAVS----TN--PYFEFDAK 80
Query: 166 KIKLGDFQ 173
G+F+
Sbjct: 81 VDAAGEFK 88
>1v8h_A Sulfur oxidation protein SOXZ; lithotrophic sulfur oxidation,
unknown function, structural genomics; 1.20A {Thermus
thermophilus HB8} SCOP: b.1.18.19
Length = 107
Score = 29.0 bits (65), Expect = 0.85
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 106 SHPNHSGKSFDIGGVYIKEDFLSEAETEDVMKQLDDLPWDKSQSGRRKQNFGPKCNFKKQ 165
HPN G D G I +++ E +++ + S S N P FK +
Sbjct: 26 QHPNEPGTRRDAEGKLIPAKYINLVEVYFEGEKVAEARPGPSTS----AN--PLYAFKFK 79
Query: 166 KIKLGDFQ 173
K G F
Sbjct: 80 AEKAGTFT 87
Score = 27.4 bits (61), Expect = 2.6
Identities = 7/24 (29%), Positives = 9/24 (37%)
Query: 57 SHPNHSGKSFDIGGVYIKEDFLTS 80
HPN G D G I ++
Sbjct: 26 QHPNEPGTRRDAEGKLIPAKYINL 49
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate
decarboxylase, lyase; 1.80A {Trypanosoma brucei}
Length = 380
Score = 30.1 bits (67), Expect = 0.98
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 3/85 (3%)
Query: 91 HCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIKEDFLSEAETEDVMKQLDDLPWDKSQSG 150
+ + GSD A Q + +K + T+ + + L P
Sbjct: 159 NKGEKPDGSDCVATQFVDETHWPEIQVMCAVLKGAQKDVSSTKGMQQSLKTSPL---MKK 215
Query: 151 RRKQNFGPKCNFKKQKIKLGDFQGF 175
R + + + IK DF F
Sbjct: 216 RISETVPERMKIASRAIKARDFATF 240
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
2.70A {Alicyclobacillus acidocaldarius subsp}
Length = 474
Score = 29.2 bits (65), Expect = 2.1
Identities = 9/55 (16%), Positives = 14/55 (25%), Gaps = 6/55 (10%)
Query: 75 EDFLTS------QTKETYVYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIK 123
DF++ + W+ + AY G G V I
Sbjct: 62 ADFVSGAREMADRAGAAICVSDEGPPEWKSEYVKAYPHRLLKDGDELHFGNVRIV 116
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor,
ATP-binding, nucleotide-binding, oncogene, TRAN; HET:
B91; 1.22A {Mus musculus} PDB: 2qoh_A* 3kf4_A* 3k5v_A*
1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A*
3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A*
3oy3_A* 2hiw_A* 2v7a_A* ...
Length = 288
Score = 28.4 bits (64), Expect = 3.2
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 123 KEDFLSEAETEDVMKQLD 140
E+FL EA VMK++
Sbjct: 53 VEEFLKEAA---VMKEIK 67
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase
domain, multitargeted small M kinase inhibitor; HET:
ITI; 2.70A {Homo sapiens}
Length = 327
Score = 28.4 bits (64), Expect = 3.7
Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 3/18 (16%)
Query: 123 KEDFLSEAETEDVMKQLD 140
++ L EA VM +D
Sbjct: 61 NKEILDEAY---VMASVD 75
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET:
ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A*
2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A*
2jko_A* 2jkk_A*
Length = 281
Score = 28.0 bits (63), Expect = 4.0
Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 123 KEDFLSEAETEDVMKQLD 140
+E FL EA M+Q D
Sbjct: 60 REKFLQEAL---TMRQFD 74
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase
inhibitor complex; HET: PP2; 1.89A {Homo sapiens} PDB:
3sxr_A*
Length = 268
Score = 27.9 bits (63), Expect = 5.2
Identities = 5/18 (27%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 123 KEDFLSEAETEDVMKQLD 140
+++F EA+ M +L
Sbjct: 47 EDEFFQEAQ---TMMKLS 61
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural
genomics, structural genom consortium, SGC, ATP-binding,
membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A
3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Length = 281
Score = 27.9 bits (63), Expect = 5.3
Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 123 KEDFLSEAETEDVMKQLD 140
KE F+SEA +MK LD
Sbjct: 57 KEKFMSEAV---IMKNLD 71
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A*
3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A*
3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A*
3ad6_A* 3kmm_A* 1qpd_A* ...
Length = 279
Score = 27.6 bits (62), Expect = 5.6
Identities = 8/18 (44%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 123 KEDFLSEAETEDVMKQLD 140
+ FL+EA +MKQL
Sbjct: 52 PDAFLAEAN---LMKQLQ 66
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase,
phosphorylation, staurosporine, transferase; HET: STU;
2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Length = 278
Score = 27.6 bits (62), Expect = 5.6
Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 123 KEDFLSEAETEDVMKQLD 140
+ FL+EA VM QL
Sbjct: 58 AQAFLAEAS---VMTQLR 72
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5;
transcription, multi-protein complex, DNA- binding,
magnesium; 3.65A {Schizosaccharomyces pombe}
Length = 113
Score = 26.6 bits (58), Expect = 6.1
Identities = 6/60 (10%), Positives = 15/60 (25%)
Query: 33 TEETYIYCPHCNKAWQGSDLYAYQSHPNHSGKSFDIGGVYIKEDFLTSQTKETYVYCPHC 92
+ C +C+ + + Y+ S D ++ + C
Sbjct: 22 DRVLRLACRNCDYSEIAATSKVYRHELQSSNVENTTVSHDASTDPTLPRSDKECPRCHQH 81
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen
typrosine kinase, active conformation, structural
genomics, structural genomix; HET: STI; 1.57A {Homo
sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A*
3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A*
3vf9_A*
Length = 291
Score = 27.6 bits (62), Expect = 6.6
Identities = 9/18 (50%), Positives = 13/18 (72%), Gaps = 3/18 (16%)
Query: 123 KEDFLSEAETEDVMKQLD 140
K++ L+EA VM+QLD
Sbjct: 62 KDELLAEAN---VMQQLD 76
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase,
4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3,
2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43;
1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A*
3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A*
1k2p_A
Length = 283
Score = 27.6 bits (62), Expect = 6.8
Identities = 6/18 (33%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 123 KEDFLSEAETEDVMKQLD 140
+++F+ EA+ VM L
Sbjct: 63 EDEFIEEAK---VMMNLS 77
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo
sapiens} SCOP: d.144.1.7
Length = 287
Score = 27.6 bits (62), Expect = 6.8
Identities = 7/18 (38%), Positives = 11/18 (61%), Gaps = 3/18 (16%)
Query: 123 KEDFLSEAETEDVMKQLD 140
E+ + EA+ +M QLD
Sbjct: 54 TEEMMREAQ---IMHQLD 68
>3zzw_A Tyrosine-protein kinase transmembrane receptor RO; transferase,
neurotrophic tyrosine kinase, receptor-related NTRKR2;
2.90A {Homo sapiens}
Length = 289
Score = 27.6 bits (62), Expect = 6.8
Identities = 5/19 (26%), Positives = 9/19 (47%), Gaps = 3/19 (15%)
Query: 123 KEDFLSEAETEDVMKQLDD 141
+E+F EA + +L
Sbjct: 56 REEFRHEAM---LRARLQH 71
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive
kinase, HER3, ATP-binding, cell membrane, membrane,
nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB:
3lmg_A*
Length = 325
Score = 27.7 bits (62), Expect = 6.9
Identities = 2/18 (11%), Positives = 4/18 (22%), Gaps = 3/18 (16%)
Query: 123 KEDFLSEAETEDVMKQLD 140
+ + LD
Sbjct: 59 FQAVTDHML---AIGSLD 73
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI,
nonnucleoside inhibitor, AIDS, HIV, rilpivirine,
diarylpyrimidine, DAPY, DNA recombination; HET: T27;
1.80A {Human immunodeficiency virus 1} PDB: 3is9_A*
3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A
1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A*
2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ...
Length = 557
Score = 27.8 bits (62), Expect = 7.0
Identities = 31/105 (29%), Positives = 46/105 (43%), Gaps = 23/105 (21%)
Query: 245 GDSNKYNLNSPCFSYQKKYPDQKSTIVNDLSLNEKSTDSIVNETLSSVVIRIPMPA---- 300
G N YN +P F+ +KK + +V+ LN+++ D V + IP PA
Sbjct: 53 GPENPYN--TPVFAIKKKDSTKWRKLVDFRELNKRTQD------FWEVQLGIPHPAGLKK 104
Query: 301 -RSLLVL-WGEARYEWQHCVLRSDVIGRRVCIAYREFTAPYMNNE 343
+S+ VL G+A + L D Y FT P +NNE
Sbjct: 105 KKSVTVLDVGDAYFS---VPLDEDF------RKYTAFTIPSINNE 140
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP
binding, phosphorylation, intracellular,
transferase-transferase inhibitor complex; HET: IAQ;
1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A*
3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A*
3mj1_A* 3mj2_A*
Length = 267
Score = 27.2 bits (61), Expect = 7.2
Identities = 9/18 (50%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 123 KEDFLSEAETEDVMKQLD 140
+EDF+ EAE VM +L
Sbjct: 47 EEDFIEEAE---VMMKLS 61
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene,
ATP-binding, cell cycle, disea mutation, glycoprotein,
membrane, nucleotide-binding; HET: 03P; 1.50A {Homo
sapiens} PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A*
1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 1xkk_A*
2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A*
2jiu_A* ...
Length = 327
Score = 27.3 bits (61), Expect = 7.4
Identities = 6/18 (33%), Positives = 9/18 (50%), Gaps = 3/18 (16%)
Query: 123 KEDFLSEAETEDVMKQLD 140
++ L EA VM +D
Sbjct: 61 NKEILDEAY---VMASVD 75
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase,
integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB:
2j0k_A*
Length = 656
Score = 27.5 bits (61), Expect = 7.4
Identities = 8/18 (44%), Positives = 10/18 (55%), Gaps = 3/18 (16%)
Query: 123 KEDFLSEAETEDVMKQLD 140
+E FL EA M+Q D
Sbjct: 435 REKFLQEAL---TMRQFD 449
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural
genomics, JOI for structural genomics, JCSG; 2.26A
{Shewanella baltica OS155}
Length = 243
Score = 27.2 bits (60), Expect = 7.8
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 105 QSHPNHSGKSFDIGG-VYIKEDFLSEAETEDVMKQLDDLPWDK------SQSGRRKQN 155
+ H +H ++ G + + S+ E + +QLD W + + RK+N
Sbjct: 5 KIHHHHHHENLYFQGMLIEIPNVFSKQEVSHLREQLDARRWIDGNQTSGAMATTRKRN 62
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase,
ATP binding, phosphoryla transferase; HET: ATP; 1.75A
{Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Length = 289
Score = 27.3 bits (61), Expect = 8.1
Identities = 5/18 (27%), Positives = 7/18 (38%), Gaps = 3/18 (16%)
Query: 123 KEDFLSEAETEDVMKQLD 140
E F A +M +L
Sbjct: 56 SESFFEAAS---MMSKLS 70
>1skz_A Antistasin; factor XA inhibitor, serine protease inhibitor,
thrombosis; 1.90A {Haementeria officinalis} SCOP:
g.3.15.1 g.3.15.1
Length = 119
Score = 26.1 bits (57), Expect = 8.3
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 7 CGCKGVRTCIKCEQEFGYENKNIVEFTEETYIYCPHCN 44
C C GVR + C G++ + +
Sbjct: 26 CTCSGVRCRVHCPH--GFQRSRYGCEFCKCRLEPMKAT 61
>3huj_A R3G1, T-cell surface glycoprotein CD1D; CD1D,
alpha-galactosylceramide, protein complex, cell
membrane, disulfide bond, endosome; HET: NDG BMA NAG
AGH; 2.50A {Homo sapiens} PDB: 2po6_A* 3u0p_A* 3sdx_A*
1zt4_A* 3tzv_C*
Length = 284
Score = 27.1 bits (61), Expect = 9.2
Identities = 12/75 (16%), Positives = 17/75 (22%), Gaps = 12/75 (16%)
Query: 139 LDDLP---WDKSQSGRR-------KQNFGPKCNFKKQKIKLGDFQGFPACTKFIQDRFHQ 188
L +L W + S + F + Q I F K
Sbjct: 33 LGELQTHSWS-NDSDTVRSLKPWSQGTFSDQQWETLQHIFRVYRSSFTRDVKEFAKMLRL 91
Query: 189 EDVLSHFQTIEQCTL 203
L Q C +
Sbjct: 92 SYPL-ELQVSAGCEV 105
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.135 0.430
Gapped
Lambda K H
0.267 0.0741 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,389,175
Number of extensions: 308503
Number of successful extensions: 960
Number of sequences better than 10.0: 1
Number of HSP's gapped: 954
Number of HSP's successfully gapped: 80
Length of query: 356
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 261
Effective length of database: 4,049,298
Effective search space: 1056866778
Effective search space used: 1056866778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.1 bits)