RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4937
         (356 letters)



>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 210

 Score = 66.5 bits (161), Expect = 2e-13
 Identities = 34/228 (14%), Positives = 73/228 (32%), Gaps = 50/228 (21%)

Query: 117 IGGVYIKEDFLSEAETEDVMKQL-DDLPW--------DKSQSGRRKQNFGPKCNFKKQKI 167
           +  V +   F+   E + +++QL  D+PW        D +    R   +  +  +   +I
Sbjct: 18  VSRVCLYPGFVDVKEADWILEQLCQDVPWKQRTGIREDITYQQPRLTAWYGELPYTYSRI 77

Query: 168 KLGDFQGFPACTKFIQDRFHQEDVLSHFQTIEQCTLEYNSENG-SSIDNHIDDCWIWGER 226
            +     +    + +++R  +     +        L     N   S+D H DD    G  
Sbjct: 78  TMEPNPHWHPVLRTLKNRIEE-----NTGHTFNSLLCNLYRNEKDSVDWHSDDEPSLGRC 132

Query: 227 IVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKKYPDQKSTIVNDLSLNEKSTDSIVN 286
            +  +L                  +  +                     + +K       
Sbjct: 133 PIIASL------------------SFGATR----------------TFEMRKKPPPEENG 158

Query: 287 ETLSSVVIRIPMPARSLLVLWGEARYEWQHCVL-RSDVIGRRVCIAYR 333
           +      ++IP+   +LL++ G  + +WQH V         RV + +R
Sbjct: 159 DYTYVERVKIPLDHGTLLIMEGATQADWQHRVPKEYHSREPRVNLTFR 206


>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB
           {Escherichia coli [TaxId: 562]}
          Length = 200

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 32/243 (13%), Positives = 62/243 (25%), Gaps = 74/243 (30%)

Query: 119 GVYIKEDFLSEAETEDVMKQLDDL-----------PWDKSQSGRRKQNFGP------KCN 161
           G  I   F   A  E +++ ++D+           P   + S     N G       +  
Sbjct: 4   GAVILRRFAFNAA-EQLIRDINDVASQSPFRQMVTPGGYTMSVAM-TNCGHLGWTTHRQG 61

Query: 162 FKKQKIKLGDFQGFPA---CTKFIQDRFHQEDVLSHFQTIEQCTLEYNSENGSSIDNHID 218
           +    I     + +PA       +  R         F   + C +   +       +   
Sbjct: 62  YLYSPIDPQTNKPWPAMPQSFHNLCQRAATAAGYPDF-QPDACLINRYAPGAKLSLHQDK 120

Query: 219 DCWIWGERIVTVNLIGDSVLTLTYYNGDSNKYNLNSPCFSYQKKYPDQKSTIVNDLSLNE 278
           D       IV+V+L   ++                        K  D             
Sbjct: 121 DEPDLRAPIVSVSLGLPAI------------------FQFGGLKRNDPL----------- 151

Query: 279 KSTDSIVNETLSSVVIRIPMPARSLLVLWGEARYEWQHCVLR------SDVIGRRVCIAY 332
                           R+ +    ++V  GE+R  + H +           I  R  + +
Sbjct: 152 ---------------KRLLLEHGDVVVWGGESRL-FYHGIQPLKAGFHPLTIDCRYNLTF 195

Query: 333 REF 335
           R+ 
Sbjct: 196 RQA 198


>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus
           [TaxId: 1396]}
          Length = 417

 Score = 28.7 bits (64), Expect = 1.1
 Identities = 12/83 (14%), Positives = 18/83 (21%), Gaps = 31/83 (37%)

Query: 55  YQSHPNHSGKSFDIGGVYIKEDFLTSQTKETYVYCPHC------------------NKAW 96
           Y S+    G  +                 +   Y                      NKAW
Sbjct: 175 YPSYTTSDGTGY--PSRG-----------KFQAYTEFAKSKFRLWVLNKYGSLNEVNKAW 221

Query: 97  QGSDLYAYQSHPNHSGKSFDIGG 119
               +      P   G+ F + G
Sbjct: 222 GTKLISELAILPPSDGEQFLMNG 244



 Score = 26.8 bits (59), Expect = 5.2
 Identities = 8/29 (27%), Positives = 11/29 (37%)

Query: 42  HCNKAWQGSDLYAYQSHPNHSGKSFDIGG 70
             NKAW    +      P   G+ F + G
Sbjct: 216 EVNKAWGTKLISELAILPPSDGEQFLMNG 244


>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus
           thermophilus [TaxId: 274]}
          Length = 106

 Score = 27.4 bits (61), Expect = 1.1
 Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 6/68 (8%)

Query: 106 SHPNHSGKSFDIGGVYIKEDFLSEAETEDVMKQLDDLPWDKSQSGRRKQNFGPKCNFKKQ 165
            HPN  G   D  G  I   +++  E     +++ +     S S     N  P   FK +
Sbjct: 26  QHPNEPGTRRDAEGKLIPAKYINLVEVYFEGEKVAEARPGPSTS----AN--PLYAFKFK 79

Query: 166 KIKLGDFQ 173
             K G F 
Sbjct: 80  AEKAGTFT 87



 Score = 25.9 bits (57), Expect = 3.9
 Identities = 7/24 (29%), Positives = 9/24 (37%)

Query: 57 SHPNHSGKSFDIGGVYIKEDFLTS 80
           HPN  G   D  G  I   ++  
Sbjct: 26 QHPNEPGTRRDAEGKLIPAKYINL 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.135    0.430 

Gapped
Lambda     K      H
   0.267   0.0462    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,389,974
Number of extensions: 65635
Number of successful extensions: 228
Number of sequences better than 10.0: 1
Number of HSP's gapped: 227
Number of HSP's successfully gapped: 11
Length of query: 356
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 270
Effective length of database: 1,226,816
Effective search space: 331240320
Effective search space used: 331240320
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.9 bits)