RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4939
(302 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 221 bits (565), Expect = 4e-69
Identities = 83/249 (33%), Positives = 133/249 (53%), Gaps = 22/249 (8%)
Query: 48 DVGEKKRLAFLDLLIESAQN--GVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTH 105
D +K FLD L+ + + G LTDEE++ V + F G DTT++ S+ L + H
Sbjct: 232 DSAKKSPRDFLDALLLAKEEEDGSKLTDEELRATVLELFFAGTDTTSSTLSWALYELAKH 291
Query: 106 PEIQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKL 165
PE+Q K+ +EIDE+ GD P T+ D M Y++ I ETLR+ P VP
Sbjct: 292 PEVQEKLREEIDEVIGDKRSP-TYDDLQNMPYLDAVIKETLRLHPVVP------------ 338
Query: 166 NSCDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKC 225
L +P T++ + IP V++ Y +HR P+ +PNP+ ++P+ FL E
Sbjct: 339 ----LLLPREVTKDTVIP--GYLIPKGTLVIVNLYALHRDPEVFPNPEEFDPERFLDENG 392
Query: 226 ANRHYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDW-KLQGDIILK 284
R ++F+PF AGPR+C+G + A +++K+ L+T+L+NF V P + + +L
Sbjct: 393 KFRKSFAFLPFGAGPRNCLGERLARMEMKLFLATLLQNFEVELPPGTDPPDIDETPGLLL 452
Query: 285 RTDGFKVKL 293
+K+K
Sbjct: 453 PPKPYKLKF 461
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 127 bits (322), Expect = 4e-34
Identities = 59/210 (28%), Positives = 99/210 (47%), Gaps = 46/210 (21%)
Query: 57 FLDLLIESAQNG-VVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQE 115
L LL+ + +G L+D+EI++++ T++ GH+TTA ++ L + HP+ AK+ E
Sbjct: 217 LLSLLLSAEDDGGGRLSDDEIRDELITLLVAGHETTANALAWALYALLRHPDQLAKLRAE 276
Query: 116 IDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPAN 175
D +E + ETLR++PPVP+ R ++V+L
Sbjct: 277 PD-----------------RPLLEAVVEETLRLYPPVPLARRVATEDVELGGY------- 312
Query: 176 CTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVP 235
IPA V++ +R P+ +P+PD ++P+ R + +P
Sbjct: 313 ------------RIPAGTVVLLSIGAANRDPEVFPDPDEFDPE---------RFNNAHLP 351
Query: 236 FSAGPRSCVGRKYAMLKLKVILSTILRNFT 265
F GP C+G A L+LKV L+ +LR F
Sbjct: 352 FGGGPHRCLGAALARLELKVALAELLRRFP 381
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 115 bits (289), Expect = 4e-29
Identities = 54/181 (29%), Positives = 91/181 (50%), Gaps = 23/181 (12%)
Query: 87 GHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETL 146
GH+TT + ++ L ++ +PE K +E+D + RP T++D E+KY+ RCI E++
Sbjct: 290 GHETTGSVLTWTLYLLSKNPEALRKAQEELDRVLQG--RPPTYEDIKELKYLTRCINESM 347
Query: 147 RMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQP 206
R++P PV+ R Q E L P + A ++I Y IHR P
Sbjct: 348 RLYPHPPVLIRRAQVEDVL-------PGG-----------YKVNAGQDIMISVYNIHRSP 389
Query: 207 DTYPNPDVYNPDNF---LPEKCANRHYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRN 263
+ + + + P+ F P + ++PFS GPR CVG ++A+L+ V L+ +L+
Sbjct: 390 EVWERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAVLLQR 449
Query: 264 F 264
Sbjct: 450 L 450
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 111 bits (279), Expect = 1e-27
Identities = 70/250 (28%), Positives = 111/250 (44%), Gaps = 44/250 (17%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIM---FEGHDTTAAGSSFFLCVMGTHPEIQAKVIQ 114
LDLLI+ TD++I + TI+ G DT+A + + ++ +PEIQ K
Sbjct: 266 LDLLIKEYGTN---TDDDILSILATILDFFLAGVDTSATSLEWMVLMLCNYPEIQEKAYN 322
Query: 115 EIDEIFGD------SDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSC 168
EI SDR T Y I ETLR P P
Sbjct: 323 EIKSTVNGRNKVLLSDRQST-------PYTVAIIKETLRYKPVSPF-------------- 361
Query: 169 DLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANR 228
+P + + ++ + IP + ++I Y + R + NP+ ++P FL +
Sbjct: 362 --GLPRSTSNDIIIGG-GHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPDSND- 417
Query: 229 HYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHS--PTKLEDWKLQGDIILKRT 286
+F+PFS GPR+CVG+++A +L + S I+ NF + S K+++ + G + LK
Sbjct: 418 ---AFMPFSIGPRNCVGQQFAQDELYLAFSNIILNFKLKSIDGKKIDETEEYG-LTLKPN 473
Query: 287 DGFKVKLTPR 296
FKV L R
Sbjct: 474 K-FKVLLEKR 482
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 99.9 bits (249), Expect = 1e-23
Identities = 57/204 (27%), Positives = 101/204 (49%), Gaps = 26/204 (12%)
Query: 66 QNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSDR 125
NG L + I ++ T F GH+TTA ++ L ++ ++P Q KV E+ E+ G
Sbjct: 307 SNGFNLNLQLIMDECKTFFFAGHETTALLLTWTLMLLASNPTWQDKVRAEVAEVCGGE-- 364
Query: 126 PCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKLNSC 185
+ ++ + I E+LR++PP ++ R +++KL
Sbjct: 365 TPSVDHLSKLTLLNMVINESLRLYPPATLLPRMAFEDIKLG------------------- 405
Query: 186 DLTIPANCTVVIGTYKIHRQPDTY-PNPDVYNPDNFLPEKCA-NRHYYSFVPFSAGPRSC 243
DL IP ++ I IH + + + + +NPD F A RH F+PF+AGPR+C
Sbjct: 406 DLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPFAPGRH---FIPFAAGPRNC 462
Query: 244 VGRKYAMLKLKVILSTILRNFTVH 267
+G+ +AM++ K+IL+ ++ F+
Sbjct: 463 IGQAFAMMEAKIILAMLISKFSFT 486
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 94.1 bits (234), Expect = 2e-21
Identities = 52/209 (24%), Positives = 98/209 (46%), Gaps = 22/209 (10%)
Query: 63 ESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGD 122
+ QN + LT + IK + +MF G +T A+ + + + PE +V QE+ ++ G
Sbjct: 292 DDLQNSIKLTRDNIKAIIMDVMFGGTETVASAIEWAMAELMKSPEDLKRVQQELADVVG- 350
Query: 123 SDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKL 182
+R D ++ Y++ + ETLR+ PP+P++ E ++ ++
Sbjct: 351 LNRRVEESDLEKLTYLKCTLKETLRLHPPIPLLLHETAEDAEVAG--------------- 395
Query: 183 NSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCAN--RHYYSFVPFSAGP 240
IP V+I + I R +++ +PD + P FL + ++ F+PF +G
Sbjct: 396 ----YFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGR 451
Query: 241 RSCVGRKYAMLKLKVILSTILRNFTVHSP 269
RSC G + + L + ++ +L FT P
Sbjct: 452 RSCPGMQLGLYALDLAVAHLLHCFTWELP 480
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 92.2 bits (229), Expect = 6e-21
Identities = 62/250 (24%), Positives = 108/250 (43%), Gaps = 52/250 (20%)
Query: 68 GVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSDRPC 127
G +TD EIK + + G DTT++ + + + HP+I K +E+D + G DR
Sbjct: 290 GGRITDTEIKALLLNLFTAGTDTTSSTVEWAIAELIRHPDILKKAQEELDAVVG-RDRLV 348
Query: 128 TFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKLNSCDL 187
+ D ++ Y++ I ET R+ P P L++P +E ++N
Sbjct: 349 SESDLPQLTYLQAVIKETFRLHPSTP----------------LSLPRMAAEECEING--Y 390
Query: 188 TIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPE--------KCANRHYYSFVPFSAG 239
IP T+++ + I R P+ +P+P + PD FLP K ++ + +PF AG
Sbjct: 391 HIPKGATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSD---FELIPFGAG 447
Query: 240 PRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGD-------------IILKRT 286
R C G + + + ++ +T++ F DW+L + L+R
Sbjct: 448 RRICAGLSWGLRMVTLLTATLVHAF---------DWELADGQTPDKLNMEEAYGLTLQRA 498
Query: 287 DGFKVKLTPR 296
V PR
Sbjct: 499 VPLMVHPRPR 508
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 91.3 bits (227), Expect = 1e-20
Identities = 61/221 (27%), Positives = 102/221 (46%), Gaps = 42/221 (19%)
Query: 58 LDLLIESA-QNGVVLTDEEIKEQVDTIMF---EGHDTTAAGSSFFLCVMGTHPEIQAKVI 113
LDLL+++ +NG L DEEI +D ++ GH+++ + + + HPE+ K
Sbjct: 269 LDLLLDAEDENGRKLDDEEI---IDLLLMYLNAGHESSGHLTMWATIFLQEHPEVLQKAK 325
Query: 114 QEIDEIFGDSDRP-----CTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSC 168
E +EI RP T +D +M+Y+ + I ETLR+ + RE + +V++N
Sbjct: 326 AEQEEIA--KKRPPGQKGLTLKDVRKMEYLSQVIDETLRLINISLTVFREAKTDVEVNG- 382
Query: 169 DLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNP---DNFLPEKC 225
TIP V+ ++H P+ YPNP ++P DN+ P+
Sbjct: 383 ------------------YTIPKGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYTPKA- 423
Query: 226 ANRHYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTV 266
+F+PF G R C G A L++ + L L + +
Sbjct: 424 -----GTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRL 459
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 90.0 bits (223), Expect = 5e-20
Identities = 62/266 (23%), Positives = 124/266 (46%), Gaps = 27/266 (10%)
Query: 40 KDDLDVDEDVGEKKRLAFLDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFL 99
+++L E+ ++ + L L+ S + ++ +++++ + T++ GH+T+AA ++
Sbjct: 359 EEELQFHEEYMNERDPSILHFLLASGDD---VSSKQLRDDLMTMLIAGHETSAAVLTWTF 415
Query: 100 CVMGTHPEIQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIAREL 159
++ P + AK+ +E+D + GD R T +D ++KY R I E+LR++P PV+ R
Sbjct: 416 YLLSKEPSVVAKLQEEVDSVLGD--RFPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRS 473
Query: 160 QQEVKLNSCDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDN 219
+ L P ++ + I + +HR P + + + +NP+
Sbjct: 474 LENDMLGG----YPIKRGED---------------IFISVWNLHRSPKHWDDAEKFNPER 514
Query: 220 FL---PEKCANRHYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWK 276
+ P +S++PF GPR CVG +A + V + ++R F K
Sbjct: 515 WPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFASFENVVATAMLVRRFDFQLAPGAPPVK 574
Query: 277 LQGDIILKRTDGFKVKLTPRKKQTVA 302
+ + T+G K+ +T R K V
Sbjct: 575 MTTGATIHTTEGLKMTVTRRTKPPVI 600
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 88.4 bits (219), Expect = 1e-19
Identities = 64/243 (26%), Positives = 111/243 (45%), Gaps = 34/243 (13%)
Query: 57 FLDLLIESAQN--GVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQ 114
FLD+++ + +N G LT IK + + G DT+++ + L M +P I + +
Sbjct: 269 FLDVVMANQENSTGEKLTLTNIKALLLNLFTAGTDTSSSVIEWSLAEMLKNPSILKRAHE 328
Query: 115 EIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPA 174
E+D++ G + R D ++ Y++ E+ R P P L +P
Sbjct: 329 EMDQVIGRNRR-LVESDLPKLPYLQAICKESFRKHPSTP----------------LNLPR 371
Query: 175 NCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCAN----RHY 230
TQ ++N IP N + + + I R PD + NP+ + P+ FL EK A +
Sbjct: 372 VSTQACEVNG--YYIPKNTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGND 429
Query: 231 YSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDIILKRTDGFK 290
+ +PF AG R C G + ++ ++ IL T++ +F DWKL + L + F
Sbjct: 430 FELIPFGAGRRICAGTRMGIVLVEYILGTLVHSF---------DWKLPDGVELNMDEAFG 480
Query: 291 VKL 293
+ L
Sbjct: 481 LAL 483
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 82.9 bits (205), Expect = 9e-18
Identities = 61/228 (26%), Positives = 106/228 (46%), Gaps = 34/228 (14%)
Query: 50 GEKKRLAFLDLLIESAQNGVVLTDEEIKEQ-----VDTIMFEGHDTTAAGSSFFLCVMGT 104
E + A +D ++E+ + G EI E V+ I +TT + + +
Sbjct: 270 KEGLKCA-IDHILEAQKKG------EINEDNVLYIVENINVAAIETTLWSIEWGIAELVN 322
Query: 105 HPEIQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVK 164
HPEIQ K+ E+D + G T DT ++ Y++ + ETLR+ +P
Sbjct: 323 HPEIQKKLRDELDTVLGP-GNQVTEPDTHKLPYLQAVVKETLRLHMAIP----------- 370
Query: 165 LNSCDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEK 224
L +P ++ KL D IPA +++ + + P+ + NP+ + P+ FL E+
Sbjct: 371 -----LLVPHMNLEDAKLGGYD--IPAESKILVNAWWLANNPELWKNPEEFRPERFLEEE 423
Query: 225 C---ANRHYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSP 269
AN + + F+PF G RSC G A+ L ++L +++NF + P
Sbjct: 424 AKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLVQNFELLPP 471
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 82.5 bits (204), Expect = 1e-17
Identities = 61/233 (26%), Positives = 106/233 (45%), Gaps = 35/233 (15%)
Query: 51 EKKRLAFLDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQA 110
++R +LD L+ A + LTDE++ V + E DTT + + + + +P+ Q
Sbjct: 241 GEERDCYLDFLLSEATH---LTDEQLMMLVWEPIIEAADTTLVTTEWAMYELAKNPDKQE 297
Query: 111 KVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVI-ARELQQEVKLNSCD 169
++ +EI E+ GD T +D + Y+ ETLR + PVP++ R + ++ L D
Sbjct: 298 RLYREIREVCGD--ERVTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYD 355
Query: 170 LTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRH 229
IPA + I Y + + NP+ ++P+ FL EK +
Sbjct: 356 -------------------IPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYESAD 396
Query: 230 YYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKL-QGDI 281
Y + F AG R C G AML + ++ +++ F +W+L +GD
Sbjct: 397 MYKTMAFGAGKRVCAGSLQAMLIACMAIARLVQEF---------EWRLREGDE 440
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 80.1 bits (197), Expect = 8e-17
Identities = 52/229 (22%), Positives = 113/229 (49%), Gaps = 33/229 (14%)
Query: 73 DEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSDRPCTFQDT 132
D+ I++ + +++ G DTT++ ++F ++ HP++ AK+ EI+ F + +D
Sbjct: 299 DKFIRDVIFSLVLAGRDTTSSALTWFFWLLSKHPQVMAKIRHEINTKFDN-------EDL 351
Query: 133 LEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKLNSCDLTIPAN 192
++ Y+ + E++R++PP+P + + L S + A
Sbjct: 352 EKLVYLHAALSESMRLYPPLPFNHKAPAKPDVLPSGH------------------KVDAE 393
Query: 193 CTVVIGTYKIHRQPDTY-PNPDVYNPDNFLPEKCANRH--YYSFVPFSAGPRSCVGRKYA 249
+VI Y + R + + + P+ ++ + RH Y F+ F++GPR+C+G+ A
Sbjct: 394 SKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLA 453
Query: 250 MLKLKVILSTILRNFTVHSPTKLEDWKLQG--DIILKRTDGFKVKLTPR 296
+L++K++ I++N+ +E K++ I+L+ G KV +T +
Sbjct: 454 LLQMKIVALEIIKNYDFKV---IEGHKIEAIPSILLRMKHGLKVTVTKK 499
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 80.1 bits (198), Expect = 8e-17
Identities = 66/270 (24%), Positives = 122/270 (45%), Gaps = 59/270 (21%)
Query: 12 IKEEKKAEEKVKDKTVVEGLSYGQSSGLKDDLDVDEDVGEKKRLAFL---DLLIESAQNG 68
I E+K +E +K +V+ L+ E + ++++L F DLL S
Sbjct: 245 IGSERKLKEAIK---LVDELA-------------AEVIRQRRKLGFSASKDLL--SRFMA 286
Query: 69 VVLTDEEIKEQVDTIMFEGHDTTAAG-SSFFLCVMGTHPEIQAKVIQEIDEIFGDSDRPC 127
+ D+ +++ V + + G DT A+ +SFF ++ HPE+ + + +E D + G +
Sbjct: 287 SINDDKYLRDIVVSFLLAGRDTVASALTSFFW-LLSKHPEVASAIREEADRVMGPNQEAA 345
Query: 128 TFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKLNSCDL 187
+F++ EM Y+ + E++R+FPPV Q + K + D +P D
Sbjct: 346 SFEEMKEMHYLHAALYESMRLFPPV-------QFDSKFAAEDDVLP------------DG 386
Query: 188 TIPANCT-VVIGTYKIHRQPDTY-PNPDVYNPDNFLPEKCANRHYYSFVP--------FS 237
T A T V Y + R + P+ + P+ +L FVP F
Sbjct: 387 TFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNG-------VFVPENPFKYPVFQ 439
Query: 238 AGPRSCVGRKYAMLKLKVILSTILRNFTVH 267
AG R C+G++ A++++K + ++R F +
Sbjct: 440 AGLRVCLGKEMALMEMKSVAVAVVRRFDIE 469
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 77.1 bits (189), Expect = 9e-16
Identities = 61/232 (26%), Positives = 100/232 (43%), Gaps = 23/232 (9%)
Query: 71 LTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSDRP-CTF 129
T + +K + I+ G DT AA + + + +P++ K E+ E + T
Sbjct: 285 FTVDNVKAVILDIVVAGTDTAAAAVVWGMTYLMKYPQVLKKAQAEVREYMKEKGSTFVTE 344
Query: 130 QDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKLNSCDLTI 189
D + Y + ETLR+ P +P L IP C Q+ K+ D I
Sbjct: 345 DDVKNLPYFRALVKETLRIEPVIP----------------LLIPRACIQDTKIAGYD--I 386
Query: 190 PANCTVVIGTYKIHRQPDTY-PNPDVYNPDNFLPEKCANRHY-YSFVPFSAGPRSCVGRK 247
PA TV + + + R + PNPD + P+ FL ++ + Y F+PF +G R C G +
Sbjct: 387 PAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMR 446
Query: 248 YAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDII--LKRTDGFKVKLTPRK 297
L+V + +L NF P ++ + D++ L +KL P K
Sbjct: 447 LGAAMLEVPYANLLLNFNFKLPNGMKPDDINMDVMTGLAMHKSQHLKLVPEK 498
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 76.0 bits (187), Expect = 2e-15
Identities = 62/262 (23%), Positives = 114/262 (43%), Gaps = 43/262 (16%)
Query: 13 KEEKKAEEKVKD--KTVVEGLSYGQSSGLKDDLDVDEDVGEKKRLAFLDLLIE-SAQNGV 69
K+ ++ E++V + +++ +S L D+D F+D+L+ +NG
Sbjct: 240 KKMREVEKRVDEFHDKIIDEHRRARSGKLPGGKDMD----------FVDVLLSLPGENGK 289
Query: 70 V-LTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSDRPCT 128
+ D EIK + ++ DT+A + + + + +P + K+ +E+D + G +R
Sbjct: 290 EHMDDVEIKALMQDMIAAATDTSAVTNEWAMAEVIKNPRVLRKIQEELDSVVG-RNRMVQ 348
Query: 129 FQDTLEMKYMERCIM-ETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKLNSCDL 187
D + + Y+ RC++ ET RM P P IP + +N
Sbjct: 349 ESDLVHLNYL-RCVVRETFRMHPAGP----------------FLIPHESLRATTINGYY- 390
Query: 188 TIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCAN---RHYYSF--VPFSAGPRS 242
IPA V I T+ + R + + + + P+ P + + H F +PFSAG R
Sbjct: 391 -IPAKTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRK 449
Query: 243 CVGRKYAMLKLKVILSTILRNF 264
C G A L + ++L + R F
Sbjct: 450 CPG---APLGVTMVLMALARLF 468
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 75.6 bits (186), Expect = 2e-15
Identities = 60/263 (22%), Positives = 112/263 (42%), Gaps = 40/263 (15%)
Query: 27 VVEGLSYGQSSGLKDDLDVDEDVGEKKRLAFLDLLIESAQNGVV-LTDEEIKEQVDTIMF 85
VV+ +Y K ++D G+K + L IE ++ TD+ +++ V +
Sbjct: 243 VVDDFTYSVIRRRKAEMDEARKSGKKVKHDILSRFIELGEDPDSNFTDKSLRDIVLNFVI 302
Query: 86 EGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSDRPC------------------ 127
G DTTA S+F+ ++ +P + K+ E+ + + +
Sbjct: 303 AGRDTTATTLSWFVYMIMMNPHVAEKLYSELKALEKERAKEEDPEDSQSFNQRVTQFAGL 362
Query: 128 -TFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKLNSCD 186
T+ +++Y+ I ETLR++P VP Q+ K D +P + T+ VK
Sbjct: 363 LTYDSLGKLQYLHAVITETLRLYPAVP-------QDPKGILEDDVLP-DGTK-VKAGGMV 413
Query: 187 LTIPANCTVVIGTYKIHRQPDTY-PNPDVYNPDNFLPEKC-ANRHYYSFVPFSAGPRSCV 244
+P Y + R + P+ + P+ ++ + N + F F AGPR C+
Sbjct: 414 TYVP---------YSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICL 464
Query: 245 GRKYAMLKLKVILSTILRNFTVH 267
G+ A L++K+ L+ + R F
Sbjct: 465 GKDSAYLQMKMALALLCRFFKFQ 487
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 73.8 bits (181), Expect = 9e-15
Identities = 57/224 (25%), Positives = 92/224 (41%), Gaps = 34/224 (15%)
Query: 59 DLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDE 118
DLL + LTDE+I + + ++F DTTA+ ++ L + +P + V +E
Sbjct: 248 DLLGSFMGDKEGLTDEQIADNIIGVIFAARDTTASVLTWILKYLAENPSVLEAVTEEQMA 307
Query: 119 IFGDSD--RPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANC 176
I D + T++DT +M R I ETLR+ + RE ++V+
Sbjct: 308 IRKDKEEGESLTWEDTKKMPLTSRVIQETLRVASILSFTFREAVEDVEYEG--------- 358
Query: 177 TQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPF 236
IP V+ IH D + +P ++P F N +F+PF
Sbjct: 359 ----------YLIPKGWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAPKPN----TFMPF 404
Query: 237 SAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGD 280
G SC G + A L++ V++ H TK W + G
Sbjct: 405 GNGTHSCPGNELAKLEISVLIH--------HLTTKYR-WSIVGT 439
>gnl|CDD|178373 PLN02774, PLN02774, brassinosteroid-6-oxidase.
Length = 463
Score = 71.7 bits (176), Expect = 5e-14
Identities = 56/213 (26%), Positives = 94/213 (44%), Gaps = 35/213 (16%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEID 117
L L+ N LTDEEI +Q+ TI++ G++T + S + + HP K +QE+
Sbjct: 247 LGYLMRKEGNRYKLTDEEIIDQIITILYSGYETVSTTSMMAVKYLHDHP----KALQELR 302
Query: 118 EIFGD------SDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLT 171
+ + P + D M++ I ET R+ V + R+ Q+++LN
Sbjct: 303 KEHLAIRERKRPEDPIDWNDYKSMRFTRAVIFETSRLATIVNGVLRKTTQDMELNG---- 358
Query: 172 IPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYY 231
IP + + T +I+ P YP+P +NP +L +K H Y
Sbjct: 359 ---------------YVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRWL-DKSLESHNY 402
Query: 232 SFVPFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
F+ F G R C G++ +++ +ST L F
Sbjct: 403 FFL-FGGGTRLCPGKELGIVE----ISTFLHYF 430
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 68.6 bits (167), Expect = 5e-13
Identities = 52/253 (20%), Positives = 109/253 (43%), Gaps = 36/253 (14%)
Query: 42 DLDVDEDVGEKKRLAFLDLLIESAQN---GVVLTDEEIKEQVDTIMFEGHDTTAAGSSFF 98
D +D + +++ +F+DLL++ ++ + T E +K + I+ G DT AA +
Sbjct: 252 DETLDPNRPKQETESFIDLLMQIYKDQPFSIKFTHENVKAMILDIVVPGTDTAAAVVVWA 311
Query: 99 LCVMGTHPEIQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIA-R 157
+ + +PE K E+ + GD + +D + Y++ I E+LR+ P +P++ R
Sbjct: 312 MTYLIKYPEAMKKAQDEVRNVIGDKGY-VSEEDIPNLPYLKAVIKESLRLEPVIPILLHR 370
Query: 158 ELQQEVKLNSCDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNP 217
E + K+ D IPA + + + + R + + NP
Sbjct: 371 ETIADAKIGGYD-------------------IPAKTIIQVNAWAVSRDTAAWGD----NP 407
Query: 218 DNFLPEKCANRHY--------YSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSP 269
+ F+PE+ H + +PF +G R C + +++ + +L F P
Sbjct: 408 NEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDWSLP 467
Query: 270 TKLEDWKLQGDII 282
++ ++ D++
Sbjct: 468 KGIKPEDIKMDVM 480
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 63.9 bits (155), Expect = 2e-11
Identities = 58/222 (26%), Positives = 88/222 (39%), Gaps = 35/222 (15%)
Query: 66 QNGVVL-TDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSD 124
QNG L T +EIK Q D A + L M +PEI K ++E+DE+ G D
Sbjct: 304 QNGKYLVTPDEIKAQCVEFCIAAIDNPANNMEWTLGEMLKNPEILRKALKELDEVVG-KD 362
Query: 125 RPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKLNS 184
R D + Y++ C ET R+ P + + ++ D T+
Sbjct: 363 RLVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQ------DTTLGG---------- 406
Query: 185 CDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHY------YSFVPFSA 238
IP + + + R P + +P VY P+ L + FV FS
Sbjct: 407 --YFIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFST 464
Query: 239 GPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGD 280
G R CVG K + + ++L+ L+ F +WKL D
Sbjct: 465 GRRGCVGVKVGTIMMVMMLARFLQGF---------NWKLHQD 497
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 59.2 bits (143), Expect = 7e-10
Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 26/201 (12%)
Query: 71 LTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSDRPCTFQ 130
LTD+EI + G DTT+ + + + +P IQ+K+ EI GD + +
Sbjct: 302 LTDDEIVNLCSEFLNAGTDTTSTALQWIMAELVKNPSIQSKLHDEIKAKTGDDQEEVSEE 361
Query: 131 DTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKLNSCDLTIP 190
D +M Y++ ++E LR PP + +P +++++ IP
Sbjct: 362 DVHKMPYLKAVVLEGLRKHPPAHFV----------------LPHKAAEDMEVGG--YLIP 403
Query: 191 ANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLP-------EKCANRHYYSFVPFSAGPRSC 243
TV ++ R + P + P+ FL + +R +PF G R C
Sbjct: 404 KGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSRE-IRMMPFGVGRRIC 462
Query: 244 VGRKYAMLKLKVILSTILRNF 264
G AML L+ ++ ++R F
Sbjct: 463 AGLGIAMLHLEYFVANMVREF 483
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 59.3 bits (143), Expect = 7e-10
Identities = 66/261 (25%), Positives = 106/261 (40%), Gaps = 44/261 (16%)
Query: 35 QSSGLKD---DLDVDEDVG---EKKRLA---FLDLLI--ESAQNGVVLTDEEIKEQVDTI 83
+SS + D D +DE + E KR FLD+ I + +LT +EIK + +
Sbjct: 276 ESSAIMDKYHDPIIDERIKMWREGKRTQIEDFLDIFISIKDEAGQPLLTADEIKPTIKEL 335
Query: 84 MFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIM 143
+ D + + + M PEI K ++EID + G +R D ++ Y++ I
Sbjct: 336 VMAAPDNPSNAVEWAMAEMINKPEILHKAMEEIDRVVG-KERFVQESDIPKLNYVKAIIR 394
Query: 144 ETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIH 203
E R+ PV A L V L+ D T+ IP V++ Y +
Sbjct: 395 EAFRLH---PVAAFNLPH-VALS--DTTVAG------------YHIPKGSQVLLSRYGLG 436
Query: 204 RQPDTYPNPDVYNPDNFLPEKCA----NRHYYSFVPFSAGPRSCVGRKYAMLKLKVILST 259
R P + +P + P+ L E C+ + F+ FS G R C ++L+
Sbjct: 437 RNPKVWSDPLSFKPERHLNE-CSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLAR 495
Query: 260 ILRNFTVHSPTKLEDWKLQGD 280
+L+ F WKL G
Sbjct: 496 LLQGFK---------WKLAGS 507
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 52.7 bits (126), Expect = 1e-07
Identities = 57/268 (21%), Positives = 105/268 (39%), Gaps = 40/268 (14%)
Query: 4 SIPIPTIGIKEEKKAEEKVKDKTVVEGLSYGQSSGLKDDLDVDEDVGEKKRLAFLDLLIE 63
S+P+P + + + K V E L+ + +E+ G +K+ L L+
Sbjct: 207 SVPLPLFSTTYRRAIQARTK---VAEALTL-----VVMKRRKEEEEGAEKKKDMLAALLA 258
Query: 64 SAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDS 123
S +DEEI + + ++ G++TT+ + + + P A++ +E ++I
Sbjct: 259 SDDG---FSDEEIVDFLVALLVAGYETTSTIMTLAVKFLTETPLALAQLKEEHEKIRAMK 315
Query: 124 DRPCTFQ--DTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVK 181
+ + D M + + + ETLR+ + I R ++ EVK
Sbjct: 316 SDSYSLEWSDYKSMPFTQCVVNETLRVANIIGGIFRRAMTDI---------------EVK 360
Query: 182 LNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNP----DNFLPEKCANRHYYSFVPFS 237
TIP V +H + + + +NP N +N F PF
Sbjct: 361 ----GYTIPKGWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGTTVPSN----VFTPFG 412
Query: 238 AGPRSCVGRKYAMLKLKVILSTILRNFT 265
GPR C G + A + L V L ++ F+
Sbjct: 413 GGPRLCPGYELARVALSVFLHRLVTRFS 440
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 50.6 bits (121), Expect = 4e-07
Identities = 49/214 (22%), Positives = 93/214 (43%), Gaps = 48/214 (22%)
Query: 71 LTDEEIKEQVDTIMFEGHDTTA---AGSSFFLCVMGTHPEIQAKVIQEIDE--------- 118
L+ E+I + + +++F GH+T++ A + FFL + K +QE+ E
Sbjct: 275 LSTEQILDLILSLLFAGHETSSVAIALAIFFL-------QGCPKAVQELREEHLEIARAK 327
Query: 119 -IFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCT 177
G+S+ ++D +M++ + I ETLR+ V + R+ ++V+ D
Sbjct: 328 KQSGESE--LNWEDYKKMEFTQCVINETLRLGNVVRFLHRKALKDVRYKGYD-------- 377
Query: 178 QEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNP-------DNFLPEKCANRHY 230
IP+ V+ +H Y P ++NP + ++
Sbjct: 378 -----------IPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATT 426
Query: 231 YSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
+F+PF GPR C G + A L++ V + ++ NF
Sbjct: 427 NNFMPFGGGPRLCAGSELAKLEMAVFIHHLVLNF 460
>gnl|CDD|215350 PLN02648, PLN02648, allene oxide synthase.
Length = 480
Score = 34.5 bits (80), Expect = 0.067
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 106 PEIQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVP 153
E+QA++ +E+ TF +M ++ + E LR+ PPVP
Sbjct: 304 EELQARLAEEVRSAVKAGGGGVTFAALEKMPLVKSVVYEALRIEPPVP 351
>gnl|CDD|215600 PLN03141, PLN03141, 3-epi-6-deoxocathasterone 23-monooxygenase;
Provisional.
Length = 452
Score = 32.8 bits (75), Expect = 0.19
Identities = 36/136 (26%), Positives = 55/136 (40%), Gaps = 22/136 (16%)
Query: 122 DSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVK 181
D+ P + D + + + + I ETLRM + + R+ ++V E+K
Sbjct: 301 DTGEPLYWTDYMSLPFTQNVITETLRMGNIINGVMRKAMKDV---------------EIK 345
Query: 182 LNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFSAGPR 241
IP V+ +H + Y NP +NP + EK N SF PF G R
Sbjct: 346 ----GYLIPKGWCVLAYFRSVHLDEENYDNPYQFNPWRW-QEKDMNNS--SFTPFGGGQR 398
Query: 242 SCVGRKYAMLKLKVIL 257
C G A L+ + L
Sbjct: 399 LCPGLDLARLEASIFL 414
>gnl|CDD|238365 cd00713, GltS, Glutamine amidotransferases class-II (Gn-AT),
glutamate synthase (GltS)-type. GltS is a homodimer that
synthesizes L-glutamate from 2-oxoglutarate and
L-glutamine, an important step in ammonia assimilation
in bacteria, cyanobacteria and plants. The N-terminal
glutaminase domain catalyzes the hydrolysis of glutamine
to glutamic acid and ammonia, and has a fold similar to
that of other glutamine amidotransferases such as
glucosamine-fructose 6-phosphate synthase (GLMS or
GFAT), glutamine phosphoribosylpyrophosphate (Prpp)
amidotransferase (GPATase), asparagine synthetase B
(AsnB), and beta lactam synthetase (beta-LS), as well as
the Ntn hydrolase folds of the proteasomal alpha and
beta subunits.
Length = 413
Score = 30.6 bits (70), Expect = 1.1
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 11/44 (25%)
Query: 43 LDVD-EDVGEKKRLA----FL-DLLIESAQNGVVLTDEEIKEQV 80
+DV E V EK RL L DL + G +L DEEIK+Q+
Sbjct: 371 VDVPPEKVVEKGRLGPGEMLLVDL-----EEGRILDDEEIKDQL 409
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 29.1 bits (66), Expect = 2.7
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 16/88 (18%)
Query: 111 KVIQEIDEIFGDSDRPCTF-QDTLEMKYMERCIMETLRM--------FPPVPVIARELQ- 160
V EI E+F + + + ++TLE++Y + I + L M F +P IAR+LQ
Sbjct: 93 GVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIPKIARKLQT 152
Query: 161 -QEVKLNSCDLTIPANC-----TQEVKL 182
+V L L PA Q +KL
Sbjct: 153 LCDVGLGYIKLGQPATTLSGGEAQRIKL 180
>gnl|CDD|153327 cd07643, I-BAR_IMD_MIM, Inverse (I)-BAR, also known as the
IRSp53/MIM homology Domain (IMD), of Missing In
Metastasis. The IMD domain, also called
Inverse-Bin/Amphiphysin/Rvs (I-BAR) domain, is a
dimerization and lipid-binding module that bends
membranes and induces membrane protrusions. Members of
this subfamily include missing in metastasis (MIM) or
metastasis suppressor 1 (MTSS1), metastasis suppressor
1-like (MTSSL) or ABBA (Actin-Bundling protein with
BAIAP2 homology), and similar proteins. They contain an
N-terminal IMD and a WASP homology 2 (WH2) actin-binding
motif at the C-terminus. MIM was originally identified
as a missing transcript from metastatic bladder and
prostate cancer cells. It is a scaffold protein that
functions in a signaling pathway between the PDGF
receptor, Src kinases, and actin assembly. It may also
function as a cofactor of the Sonic hedgehog (Shh)
transcriptional pathway and may participate in tumor
development and progression via this pathway. ABBA
regulates actin and plasma membrane dynamics to promote
the extension of radial glia, which is important in
neuronal migration, axon guidance and neurogenesis. The
IMD domain of MIM binds and bundles actin filaments,
binds membranes, and interacts with the small GTPase
Rac.
Length = 231
Score = 28.6 bits (64), Expect = 3.3
Identities = 13/40 (32%), Positives = 18/40 (45%)
Query: 237 SAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWK 276
SA R C+ K KLK S ++ K+E+WK
Sbjct: 71 SALTRMCMRHKSIETKLKQFTSALMDCLVNPLQEKIEEWK 110
>gnl|CDD|197252 cd09155, PLDc_PaCLS_like_1, Putative catalytic domain, repeat 1,
of Pseudomonas aeruginosa cardiolipin synthase and
similar proteins. Putative catalytic domain, repeat 1,
of Pseudomonas aeruginosa cardiolipin (CL) synthase
(PaCLS) and similar proteins. Although PaCLS and
similar proteins have not been functionally
characterized, members in this subfamily show high
sequence homology to bacterial CL synthases, which
catalyze the reversible phosphatidyl group transfer
between two phosphatidylglycerol molecules to form CL
and glycerol. Moreover, PaCLS and other members of this
subfamily contain two HKD motifs (H-x-K-x(4)-D, where x
represents any amino acid residue) that characterizes
the phospholipase D (PLD) superfamily. The two motifs
may be part of the active site and may be involved in
phosphatidyl group transfer.
Length = 156
Score = 28.0 bits (63), Expect = 3.8
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 7/32 (21%)
Query: 46 DEDVGEKKRLAFLDLLIESAQNGV---VLTDE 74
D+D+G D LI AQ GV +L DE
Sbjct: 30 DDDLG----RELKDALIARAQAGVRVYLLYDE 57
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 28.4 bits (64), Expect = 5.0
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 15/66 (22%)
Query: 132 TLEMKYMERCIMETLRM--------FPPVPVIARELQ-------QEVKLNSCDLTIPANC 176
TLE+KY + I + L M F VP I+R+LQ ++L T+
Sbjct: 775 TLEVKYKGKNIADVLDMTVEEAYEFFEAVPSISRKLQTLCDVGLGYIRLGQPATTLSGGE 834
Query: 177 TQEVKL 182
Q +KL
Sbjct: 835 AQRIKL 840
>gnl|CDD|107086 PHA01816, PHA01816, hypothetical protein.
Length = 160
Score = 27.7 bits (61), Expect = 5.1
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 3/30 (10%)
Query: 111 KVIQEIDEIF---GDSDRPCTFQDTLEMKY 137
K I+EID ++ G SDRP T D +++Y
Sbjct: 121 KYIKEIDTLYKEIGKSDRPVTNIDDEDVRY 150
>gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed.
Length = 943
Score = 28.1 bits (64), Expect = 6.8
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 10/44 (22%)
Query: 132 TLEMKYMERCIMETLRM--------FPPVPVIARELQ--QEVKL 165
TLE+KY + I + L M F +P IAR+LQ +V L
Sbjct: 776 TLEVKYKGKNIADVLDMTVEEALEFFEAIPKIARKLQTLVDVGL 819
>gnl|CDD|215146 PLN02260, PLN02260, probable rhamnose biosynthetic enzyme.
Length = 668
Score = 27.8 bits (62), Expect = 8.1
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 15/64 (23%)
Query: 76 IKEQVDTIMF---EGHDTTAAGSSFFLC---VMGTHPEIQA-KVIQEI--------DEIF 120
I E +DTIM + H + G+SF + GTH ++A KV +I DE++
Sbjct: 77 ITEGIDTIMHFAAQTHVDNSFGNSFEFTKNNIYGTHVLLEACKVTGQIRRFIHVSTDEVY 136
Query: 121 GDSD 124
G++D
Sbjct: 137 GETD 140
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.401
Gapped
Lambda K H
0.267 0.0726 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,483,983
Number of extensions: 1485722
Number of successful extensions: 1392
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1334
Number of HSP's successfully gapped: 46
Length of query: 302
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 206
Effective length of database: 6,679,618
Effective search space: 1376001308
Effective search space used: 1376001308
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)