RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4939
(302 letters)
>3mdm_A Cholesterol 24-hydroxylase; CYP46A1, P450 46A1, thioperamide,
monooxygenase, metab enzyme, oxidoreductase, heme,
cholesterol metabolism; HET: HEM FJZ; 1.60A {Homo
sapiens} PDB: 2q9g_A* 2q9f_A* 3mdr_A* 3mdt_A* 3mdv_A*
Length = 456
Score = 300 bits (771), Expect = e-100
Identities = 64/252 (25%), Positives = 120/252 (47%), Gaps = 25/252 (9%)
Query: 50 GEKKRLAFLDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQ 109
GE+ L ++++ + DE + + T GH+T+A +F + + PEI
Sbjct: 220 GEEVPADILTQILKAEEGA--QDDEGLLDNFVTFFIAGHETSANHLAFTVMELSRQPEIV 277
Query: 110 AKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCD 169
A++ E+DE+ G R F+D ++Y+ + + E+LR++PP R L++E ++
Sbjct: 278 ARLQAEVDEVIGS-KRYLDFEDLGRLQYLSQVLKESLRLYPPAWGTFRLLEEETLID--- 333
Query: 170 LTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRH 229
+ +P N ++ TY + R + +P +NPD F P A +
Sbjct: 334 ----------------GVRVPGNTPLLFSTYVMGRMDTYFEDPLTFNPDRFGPG--APKP 375
Query: 230 YYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDIILKRTDGF 289
+++ PFS G RSC+G+++A +++KV+++ +L+ + + LQ LK D
Sbjct: 376 RFTYFPFSLGHRSCIGQQFAQMEVKVVMAKLLQRLEF-RLVPGQRFGLQEQATLKPLDPV 434
Query: 290 KVKLTPRKKQTV 301
L PR Q
Sbjct: 435 LCTLRPRGWQPA 446
>3s79_A Cytochrome P450 19A1; oxidoreductase; HET: HEM ASD; 2.75A {Homo
sapiens} PDB: 3eqm_A* 3s7s_A*
Length = 503
Score = 301 bits (774), Expect = e-100
Identities = 60/261 (22%), Positives = 114/261 (43%), Gaps = 32/261 (12%)
Query: 44 DVDEDVGEKKRLAFLDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMG 103
+ + ++ + F LI A+ LT E + + + ++ DT + F L ++
Sbjct: 265 RISTEEKLEECMDFATELIL-AEKRGDLTRENVNQCILEMLIAAPDTMSVSLFFMLFLIA 323
Query: 104 THPEIQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEV 163
HP ++ +I+EI + G +R D ++K ME I E++R P V ++ R+ ++
Sbjct: 324 KHPNVEEAIIKEIQTVIG--ERDIKIDDIQKLKVMENFIYESMRYQPVVDLVMRKALEDD 381
Query: 164 KLNSCDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPE 223
++ + +++ ++HR + +P P+ + +NF
Sbjct: 382 VID-------------------GYPVKKGTNIILNIGRMHR-LEFFPKPNEFTLENFAK- 420
Query: 224 KCANRHYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSP--TKLEDWKLQGDI 281
N Y F PF GPR C G+ AM+ +K IL T+LR F V + +E + D+
Sbjct: 421 ---NVPYRYFQPFGFGPRGCAGKYIAMVMMKAILVTLLRRFHVKTLQGQCVESIQKIHDL 477
Query: 282 IL---KRTDGFKVKLTPRKKQ 299
L + + ++ TPR
Sbjct: 478 SLHPDETKNMLEMIFTPRNSD 498
>3i3k_A Lanosterol 14-alpha demethylase; cytochrome P450, hemeprotein,
alternative splicing, cholesterol biosynthesis,
endoplasmic reticulum, heme, iron; HET: HEM KLN BCD;
2.80A {Homo sapiens} PDB: 3jus_A* 3juv_A* 3ld6_A*
Length = 461
Score = 263 bits (674), Expect = 1e-85
Identities = 54/248 (21%), Positives = 107/248 (43%), Gaps = 21/248 (8%)
Query: 50 GEKKRLAFLDLLIESA-QNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEI 108
++K L L+++ ++G LTD+E+ + ++ G T++ S++ + +
Sbjct: 226 SQEKIDDILQTLLDATYKDGRPLTDDEVAGMLIGLLLAGQHTSSTTSAWMGFFLARDKTL 285
Query: 109 QAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSC 168
Q K E + G++ P T+ ++ ++RCI ETLR+ PP+ ++ R + +
Sbjct: 286 QKKCYLEQKTVCGENLPPLTYDQLKDLNLLDRCIKETLRLRPPIMIMMRMARTPQTVA-- 343
Query: 169 DLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANR 228
TIP V + R D++ +NPD +L + A+
Sbjct: 344 -----------------GYTIPPGHQVCVSPTVNQRLKDSWVERLDFNPDRYLQDNPASG 386
Query: 229 HYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDIILKRTDG 288
+++VPF AG C+G +A +++K I ST+LR + +I +
Sbjct: 387 EKFAYVPFGAGRHRCIGENFAYVQIKTIWSTMLRLYEFDLIDGYFPTVNYTTMIH-TPEN 445
Query: 289 FKVKLTPR 296
++ R
Sbjct: 446 PVIRYKRR 453
>3dbg_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP170A1,
molecular mechanism, heme, iron, metal-binding,
monooxygenase; HET: HEM; 2.60A {Streptomyces coelicolor
A3} PDB: 3el3_A*
Length = 467
Score = 260 bits (666), Expect = 2e-84
Identities = 65/247 (26%), Positives = 111/247 (44%), Gaps = 24/247 (9%)
Query: 51 EKKRLAFLDLLIESA-QNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQ 109
+K L L+E+ NG + ++EI +QV I+ G +T A+ + L + HPE
Sbjct: 238 GQKPDDLLTALLEAKDDNGDPIGEQEIHDQVVAILTPGSETIASTIMWLLQALADHPEHA 297
Query: 110 AKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCD 169
++ E++ + G RP F+D ++++ I+E +R+ P V V+ R E +L
Sbjct: 298 DRIRDEVEAVTGG--RPVAFEDVRKLRHTGNVIVEAMRLRPAVWVLTRRAVAESELG--- 352
Query: 170 LTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRH 229
IPA ++ Y I R P +Y + ++PD +LPE+ AN
Sbjct: 353 ----------------GYRIPAGADIIYSPYAIQRDPKSYDDNLEFDPDRWLPERAANVP 396
Query: 230 YYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDIILKRTDGF 289
Y+ PFSAG R C ++M +L +I + + + D ++ I L R
Sbjct: 397 KYAMKPFSAGKRKCPSDHFSMAQLTLITAALATKYRFEQVAGSND-AVRVGITL-RPHDL 454
Query: 290 KVKLTPR 296
V+ R
Sbjct: 455 LVRPVAR 461
>2ij2_A Cytochrome P450 BM3; monoxygenase, heme binding protein, atomic
resolution, oxidoreductase; HET: HEM; 1.20A {Bacillus
megaterium} SCOP: a.104.1.1 PDB: 2hpd_A* 1fag_A* 1jpz_A*
1zo9_A* 1zo4_A* 1zoa_A* 3m4v_A* 3ekb_A* 3ben_A* 1fah_A*
2nnb_A* 3kx3_A* 3ekd_A* 3ekf_A* 1smi_A* 1smj_A* 3kx4_A*
2ij3_A* 2ij4_A* 3hf2_A* ...
Length = 470
Score = 250 bits (640), Expect = 2e-80
Identities = 48/251 (19%), Positives = 110/251 (43%), Gaps = 27/251 (10%)
Query: 50 GEKKRLAFLDLLIES--AQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPE 107
++ L ++ + G L DE I+ Q+ T + GH+TT+ SF L + +P
Sbjct: 226 SGEQSDDLLTHMLNGKDPETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPH 285
Query: 108 IQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNS 167
+ K +E + D +++ ++KY+ + E LR++P P + +++ L
Sbjct: 286 VLQKAAEEAARVLV--DPVPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGG 343
Query: 168 CDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYP-NPDVYNPDNFLPEKCA 226
+ + +++ ++HR + + + + P+ F +
Sbjct: 344 ------------------EYPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENP--S 383
Query: 227 NRHYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDIILKRT 286
++F PF G R+C+G+++A+ + ++L +L++F + ++ + L +
Sbjct: 384 AIPQHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDF-EDHTNYELDIKETLTL-KP 441
Query: 287 DGFKVKLTPRK 297
+GF VK +K
Sbjct: 442 EGFVVKAKSKK 452
>3gw9_A Sterol 14alpha-demethylase; CYP51, cytochrome P450, heme,
oxidoreductase, monooxygenase, sterol biosynthesis,
lipids, endoplasmic reticulum; HET: HEM VNI; 1.87A
{Trypanosoma brucei} PDB: 3g1q_A* 3p99_A* 2wv2_A*
2x2n_A* 3khm_A* 3k1o_A* 3ksw_A* 2wx2_A* 2wuz_A* 3l4d_A*
Length = 450
Score = 246 bits (629), Expect = 6e-79
Identities = 47/256 (18%), Positives = 104/256 (40%), Gaps = 32/256 (12%)
Query: 46 DEDVGEKKRLAFLDLLIESA-QNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGT 104
+E + L L+ + ++G ++ E+ + MF G T++ +++ + +
Sbjct: 223 EEVNKDSSTSDLLSGLLSAVYRDGTPMSLHEVCGMIVAAMFAGQHTSSITTTWSMLHLMH 282
Query: 105 HPEIQA--KVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQE 162
++ + +EI+E + EM + ERC E++R PP+ ++ R++ +
Sbjct: 283 PANVKHLEALRKEIEEFPAQLN---YNNVMDEMPFAERCARESIRRDPPLLMLMRKVMAD 339
Query: 163 VKLNSCDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLP 222
VK+ +P + H + +P P ++P+
Sbjct: 340 VKVG-------------------SYVVPKGDIIACSPLLSHHDEEAFPEPRRWDPERDE- 379
Query: 223 EKCANRHYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHS-PTKLEDWKLQGDI 281
+ +F+ F AG C+G+K+ +L++K IL+T R++ ++ D +
Sbjct: 380 -----KVEGAFIGFGAGVHKCIGQKFGLLQVKTILATAFRSYDFQLLRDEVPDPDYHTMV 434
Query: 282 ILKRTDGFKVKLTPRK 297
+ +VK RK
Sbjct: 435 VGPTASQCRVKYIRRK 450
>2cib_A Cytochrome P450 51; heme, heme lipid synthesis, metal-binding,
monooxygenase, NADP, oxidoreductase, protein-inhibitor
complex; HET: HEM CM6; 1.50A {Mycobacterium
tuberculosis} SCOP: a.104.1.1 PDB: 2bz9_A* 1x8v_A*
2ci0_A* 2vku_A* 2w09_A* 2w0b_A* 2w0a_A* 1h5z_A* 1ea1_A*
1e9x_A* 1u13_A*
Length = 455
Score = 241 bits (616), Expect = 5e-77
Identities = 57/251 (22%), Positives = 109/251 (43%), Gaps = 24/251 (9%)
Query: 50 GEKKRLAFLDLLIESA--QNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPE 107
+K LD+LI + +EI ++MF GH T++ +S+ L + H +
Sbjct: 218 TDKSDRDMLDVLIAVKAETGTPRFSADEITGMFISMMFAGHHTSSGTASWTLIELMRHRD 277
Query: 108 IQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNS 167
A VI E+DE++GD R +F ++ +E + ETLR+ PP+ ++ R + E ++
Sbjct: 278 AYAAVIDELDELYGD-GRSVSFHALRQIPQLENVLKETLRLHPPLIILMRVAKGEFEVQ- 335
Query: 168 CDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCAN 227
I V +R P+ +P+P + P + + +
Sbjct: 336 ------------------GHRIHEGDLVAASPAISNRIPEDFPDPHDFVPARYEQPRQED 377
Query: 228 -RHYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLE-DWKLQGDIILKR 285
+ ++++PF AG CVG +A++++K I S +LR + E ++++
Sbjct: 378 LLNRWTWIPFGAGRHRCVGAAFAIMQIKAIFSVLLREYEFEMAQPPESYRNDHSKMVVQL 437
Query: 286 TDGFKVKLTPR 296
V+ R
Sbjct: 438 AQPAAVRYRRR 448
>3k9v_A 1,25-dihydroxyvitamin D(3) 24-hydroxylase, mitochondrial;
mitochondrial cytochrome P450, monotopic membrane
protein, monooxygenase; HET: HEM CPS; 2.50A {Rattus
norvegicus} PDB: 3k9y_A*
Length = 482
Score = 235 bits (601), Expect = 2e-74
Identities = 49/250 (19%), Positives = 106/250 (42%), Gaps = 26/250 (10%)
Query: 47 EDVGEKKRLAFLDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHP 106
+ ++ FL + + L+ +E+ V + +TTA + L + +P
Sbjct: 259 QRYSQQPGADFLCDIYQQDH----LSKKELYAAVTELQLAAVETTANSLMWILYNLSRNP 314
Query: 107 EIQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLN 166
+ Q +++QE+ + D+ P +D M Y++ C+ E++R+ P VP R L + L
Sbjct: 315 QAQRRLLQEVQSVLPDNQTP-RAEDLRNMPYLKACLKESMRLTPSVPFTTRTLDKPTVLG 373
Query: 167 SCDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCA 226
+ +P + + T + D + + + P+ +L ++
Sbjct: 374 -------------------EYALPKGTVLTLNTQVLGSSEDNFEDSHKFRPERWLQKE-K 413
Query: 227 NRHYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDIILKRT 286
+ ++ +PF G R C+GR+ A L+L + L I++ + + + E ++ IL +
Sbjct: 414 KINPFAHLPFGIGKRMCIGRRLAELQLHLALCWIIQKYDIVATDN-EPVEMLHLGILVPS 472
Query: 287 DGFKVKLTPR 296
+ PR
Sbjct: 473 RELPIAFRPR 482
>3n9y_A Cholesterol SIDE-chain cleavage enzyme; cytochrome P450,
cholesterol SIDE chain cleavage, structural genomics,
structural genomics consortium, SGC; HET: HEM CLR; 2.10A
{Homo sapiens} PDB: 3n9z_A* 3na1_A* 3na0_A* 3mzs_A*
Length = 487
Score = 229 bits (587), Expect = 2e-72
Identities = 53/251 (21%), Positives = 98/251 (39%), Gaps = 23/251 (9%)
Query: 50 GEKKRLAFLDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQ 109
+ +L + ++ E+IK V ++ G DTT+ + L M + ++Q
Sbjct: 251 KGSVHHDYRGILYRLLGDSK-MSFEDIKANVTEMLAGGVDTTSMTLQWHLYEMARNLKVQ 309
Query: 110 AKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCD 169
+ E+ + + ++ I ETLR+ P + R L ++ L
Sbjct: 310 DMLRAEVLAARHQAQGD-MATMLQLVPLLKASIKETLRLHPISVTLQRYLVNDLVLR--- 365
Query: 170 LTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRH 229
D IPA V + Y + R+P + +P+ ++P +L + N
Sbjct: 366 ----------------DYMIPAKTLVQVAIYALGREPTFFFDPENFDPTRWLSKD-KNIT 408
Query: 230 YYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDIILKRTDGF 289
Y+ + F G R C+GR+ A L++ + L +L NF V L D ++IL
Sbjct: 409 YFRNLGFGWGVRQCLGRRIAELEMTIFLINMLENFRV-EIQHLSDVGTTFNLILMPEKPI 467
Query: 290 KVKLTPRKKQT 300
P ++
Sbjct: 468 SFTFWPFNQEA 478
>2ve3_A Putative cytochrome P450 120; oxidoreductase, monooxygenase,
metal-binding, heme, iron; HET: HEM REA; 2.10A
{Synechocystis SP} PDB: 2ve4_A*
Length = 444
Score = 221 bits (566), Expect = 1e-69
Identities = 60/241 (24%), Positives = 115/241 (47%), Gaps = 24/241 (9%)
Query: 57 FLDLLIESAQ-NGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQE 115
L +L+ + N L+ E+K+Q+ ++F GH+T + S F ++G H +I+ +V QE
Sbjct: 224 ALGILLAARDDNNQPLSLPELKDQILLLLFAGHETLTSALSSFCLLLGQHSDIRERVRQE 283
Query: 116 IDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPAN 175
+++ + T + +M Y+++ + E LR+ PPV REL Q+ +
Sbjct: 284 QNKLQL--SQELTAETLKKMPYLDQVLQEVLRLIPPVGGGFRELIQDCQFQ--------- 332
Query: 176 CTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANR-HYYSFV 234
P V + H PD YP+P+ ++P+ F P+ A ++ V
Sbjct: 333 ----------GFHFPKGWLVSYQISQTHADPDLYPDPEKFDPERFTPDGSATHNPPFAHV 382
Query: 235 PFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDIILKRTDGFKVKLT 294
PF G R C+G+++A L++K+ + +++ F + ++ +L + D +VKL
Sbjct: 383 PFGGGLRECLGKEFARLEMKLFATRLIQQFDW-TLLPGQNLELVVTPSPRPKDNLRVKLH 441
Query: 295 P 295
Sbjct: 442 S 442
>3nxu_A Cytochrome P450 3A4; alpha beta protein, cytochrome P450 fold,
hemoprotein, monoo cytochrome P450 reductase,
endoplasmic reticulum; HET: HEM RIT; 2.00A {Homo
sapiens} PDB: 1w0e_A* 1w0g_A* 2j0d_A* 2v0m_A* 1w0f_A*
1tqn_A* 3ua1_A* 3tjs_A*
Length = 485
Score = 202 bits (516), Expect = 7e-62
Identities = 71/257 (27%), Positives = 129/257 (50%), Gaps = 26/257 (10%)
Query: 50 GEKKRLAFLDLLIESAQNG-----VVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGT 104
+K R+ FL L+I+S + L+D E+ Q +F G++TT++ SF + + T
Sbjct: 242 TQKHRVDFLQLMIDSQNSKETESHKALSDLELVAQSIIFIFAGYETTSSVLSFIMYELAT 301
Query: 105 HPEIQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVK 164
HP++Q K+ +EID + + P T+ L+M+Y++ + ETLR+FP + R
Sbjct: 302 HPDVQQKLQEEIDAVLPNKAPP-TYDTVLQMEYLDMVVNETLRLFPIAMRLERV------ 354
Query: 165 LNSCDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEK 224
C ++V++N + IP V+I +Y +HR P + P+ + P+ F +
Sbjct: 355 -----------CKKDVEIN--GMFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKN 401
Query: 225 CANRHYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVH-SPTKLEDWKLQGDIIL 283
N Y + PF +GPR+C+G ++A++ +K+ L +L+NF+ KL +L
Sbjct: 402 KDNIDPYIYTPFGSGPRNCIGMRFALMNMKLALIRVLQNFSFKPCKETQIPLKLSLGGLL 461
Query: 284 KRTDGFKVKLTPRKKQT 300
+ +K+ R
Sbjct: 462 QPEKPVVLKVESRDGTV 478
>1n97_A CYP175A1; electron transport; HET: SRT HEM; 1.80A {Thermus
thermophilus} SCOP: a.104.1.1 PDB: 1wiy_A*
Length = 389
Score = 198 bits (507), Expect = 2e-61
Identities = 44/239 (18%), Positives = 86/239 (35%), Gaps = 46/239 (19%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEID 117
+ LI L E + T++ GH+T A+ ++ ++ P+ Q +V + +
Sbjct: 194 AEALIVHP-PLSHLPRERALSEAVTLLVAGHETVASALTWSFLLLSHRPDWQKRVAESEE 252
Query: 118 EIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCT 177
E LR++PP ++ R L++ + L
Sbjct: 253 AALA-------------------AFQEALRLYPPAWILTRRLERPLLL------------ 281
Query: 178 QEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFS 237
+ +P T+V+ Y R +P+ + + P+ FL E + PF
Sbjct: 282 -------GEDRLPPGTTLVLSPYVTQRLH--FPDGEAFRPERFLEE--RGTPSGRYFPFG 330
Query: 238 AGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDIILKRTDGFKVKLTPR 296
G R C+GR +A+L+ ++L R F + + + L+ G +
Sbjct: 331 LGQRLCLGRDFALLEGPIVLRAFFRRFRLDPLPFPR---VLAQVTLRPEGGLPARPREE 386
>3dan_A Cytochrome P450 74A2; AOS heme cytochrome P450 structure, fatty
acid biosynthesis, heme, iron, lipid synthesis, lyase,
metal-binding; HET: HEM; 1.80A {Parthenium argentatum}
PDB: 3dam_A* 3dbm_A*
Length = 473
Score = 201 bits (512), Expect = 2e-61
Identities = 41/269 (15%), Positives = 88/269 (32%), Gaps = 41/269 (15%)
Query: 44 DVDEDVGEKKRLAFLDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFL-CVM 102
+ + + ++ ++ + GV DE + + + F L +
Sbjct: 235 STYNKLYDYFQSVATPVMEQAEKLGV-PKDEAVHNILFAVCFNTFGGVKILFPNTLKWIG 293
Query: 103 GTHPEIQAKVIQEIDEIFGD-SDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQ 161
+ ++ +EI D T + +M + + E+LR+ PPVP + +
Sbjct: 294 LAGENLHTQLAEEIRGAIKSYGDGNVTLEAIEQMPLTKSVVYESLRIEPPVPPQYGKAKS 353
Query: 162 EVKLNSCDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFL 221
+ S D T + + + P + P+ Y PD F+
Sbjct: 354 NFTIESHDATF---------------EVKKGEMLFGYQPFATKDPKVFDRPEEYVPDRFV 398
Query: 222 PEKCANRHYYSFVPFSAGP---------RSCVGRKYAMLKLKVILSTILRNFTVHSPTKL 272
+ +V +S GP + C G+ + +L ++ + + R +
Sbjct: 399 GD---GEALLKYVWWSNGPETESPTVENKQCAGKDFVVLITRLFVIELFRRYDSFEIEL- 454
Query: 273 EDWKLQGDIILKRTDGFKVKLTPRKKQTV 301
G+ L V LT K+ ++
Sbjct: 455 ------GESPLG----AAVTLTFLKRASI 473
>3b6h_A Prostacyclin synthase; enzyme-inhibitor complex, CYP8A1, cytochrome
P450, endoplasmic reticulum, fatty acid biosynthesis,
heme, iron, isomerase; HET: BOG MXD HEM; 1.62A {Homo
sapiens} PDB: 2iag_A*
Length = 498
Score = 198 bits (506), Expect = 2e-60
Identities = 45/280 (16%), Positives = 97/280 (34%), Gaps = 39/280 (13%)
Query: 39 LKDDLDVDEDVGEKKRLAFLDLLIESAQ-NGVVLTDEEIKEQVDTIMFEGHDTTAAGSSF 97
L L R +L+ + + G +++E + ++ + +
Sbjct: 227 LWKLLSPARLARRAHRSKWLESYLLHLEEMG--VSEEMQARALVLQLWATQGNMGPAAFW 284
Query: 98 FLCVMGTHPEIQAKVIQEIDEIFGDSDRPC------TFQDTLEMKYMERCIMETLRMFPP 151
L + +PE A V E++ I +++P + ++ + E+LR+
Sbjct: 285 LLLFLLKNPEALAAVRGELESILWQAEQPVSQTTTLPQKVLDSTPVLDSVLSESLRL-TA 343
Query: 152 VPVIARELQQEVKLNSCDLTIPANCTQEVKLNSCDLTIPANCTVVIG-TYKIHRQPDTYP 210
P I RE+ ++ + D + + +++ R P+ Y
Sbjct: 344 APFITREVVVDLAMPMADGR--------------EFNLRRGDRLLLFPFLSPQRDPEIYT 389
Query: 211 NPDVYNPDNFLPE---------KCANRHYYSFVPFSAGPRSCVGRKYAMLKLKVILSTIL 261
+P+V+ + FL K R +P+ AG C+GR YA+ +K + +L
Sbjct: 390 DPEVFKYNRFLNPDGSEKKDFYKDGKRLKNYNMPWGAGHNHCLGRSYAVNSIKQFVFLVL 449
Query: 262 RNFTVHSPTKLE-----DWKLQGDIILKRTDGFKVKLTPR 296
+ + D G +++ V+ R
Sbjct: 450 VHLDLELINADVEIPEFDLSRYGFGLMQPEHDVPVRYRIR 489
>3dsk_A Cytochrome P450 74A, chloroplast; P450 fold, fatty acid
biosynthesis, heme, iron, synthesis, lyase,
metal-binding, oxylipin biosynthesis; HET: HEM T25;
1.55A {Arabidopsis thaliana} PDB: 2rcm_A* 3dsj_A*
3dsi_A* 2rcl_A* 2rch_A* 3cli_A*
Length = 495
Score = 195 bits (496), Expect = 6e-59
Identities = 34/228 (14%), Positives = 72/228 (31%), Gaps = 28/228 (12%)
Query: 51 EKKRLAFLDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVM-----GTH 105
++ FL+ E L E ++F T G M
Sbjct: 256 QRLYEFFLESAGEILVEADKLGISRE-EATHNLLFATCFNTWGGMKILFPNMVKRIGRAG 314
Query: 106 PEIQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKL 165
++ ++ +EI + + T +M+ + + E LR PPV ++++ +
Sbjct: 315 HQVHNRLAEEIRSVIKSNGGELTMGAIEKMELTKSVVYECLRFEPPVTAQYGRAKKDLVI 374
Query: 166 NSCDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKC 225
S D + A + R P + D + P+ F+ E+
Sbjct: 375 ESHDAAF---------------KVKAGEMLYGYQPLATRDPKIFDRADEFVPERFVGEEG 419
Query: 226 ANRHYYSFVPF-------SAGPRSCVGRKYAMLKLKVILSTILRNFTV 266
+ + G + C G+ + +L ++ + I R +
Sbjct: 420 EKLLRHVLWSNGPETETPTVGNKQCAGKDFVVLVARLFVIEIFRRYDS 467
>3dax_A Cytochrome P450 7A1; cholesterol, cholesterol 7-alpha hydroxylase,
structural genomics, structural genomics consortium,
SGC, cholesterol metabolism; HET: HEM; 2.15A {Homo
sapiens} PDB: 3sn5_A*
Length = 491
Score = 192 bits (490), Expect = 5e-58
Identities = 42/265 (15%), Positives = 89/265 (33%), Gaps = 39/265 (14%)
Query: 57 FLDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEI 116
+ L + D E + +++ T + + L M +PE +E+
Sbjct: 239 LISLRMFLNDTLSTFDDLEKAKTHLVVLWASQANTIPATFWSLFQMIRNPEAMKAATEEV 298
Query: 117 DEIFGDSDRPC---------TFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNS 167
++ + + + ++ ++ I E+LR+ I R +++
Sbjct: 299 KRTLENAGQKVSLEGNPICLSQAELNDLPVLDSIIKESLRLSSASLNI-RTAKEDF---- 353
Query: 168 CDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCAN 227
+ L I + + + +H P+ YP+P + D +L E
Sbjct: 354 -----------TLHLEDGSYNIRKDDIIALYPQLMHLDPEIYPDPLTFKYDRYLDENGKT 402
Query: 228 RHY---------YSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLE----- 273
+ Y ++PF +G C GR +A+ ++K L +L F +
Sbjct: 403 KTTFYCNGLKLKYYYMPFGSGATICPGRLFAIHEIKQFLILMLSYFELELIEGQAKCPPL 462
Query: 274 DWKLQGDIILKRTDGFKVKLTPRKK 298
D G IL + + K +
Sbjct: 463 DQSRAGLGILPPLNDIEFKYKFKHH 487
>1izo_A P450bsbeta, cytochrome P450 152A1; heme protein, protein-fatty acid
complex, riken structural genomics/proteomics
initiative, RSGI; HET: HEM PAM; 2.10A {Bacillus
subtilis} SCOP: a.104.1.1 PDB: 2zqj_A* 2zqx_A*
Length = 417
Score = 160 bits (406), Expect = 3e-46
Identities = 31/256 (12%), Positives = 74/256 (28%), Gaps = 47/256 (18%)
Query: 47 EDVGEKKRLAFLDLLIESA-QNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTH 105
+ + L + ++G L ++ ++ + F + H
Sbjct: 203 AGLLKTTSGTALHEMAFHTQEDGSQLDSRMAAIELINVLR-PIVAISYFLVFSALALHEH 261
Query: 106 PEIQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKL 165
P+ + + + E + E R +P P + ++++
Sbjct: 262 PKYKEWLRSG------------------NSREREMFVQEVRRYYPFGPFLGALVKKDFVW 303
Query: 166 NSCDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKC 225
N + +V++ Y + P + +PD + P+ F +
Sbjct: 304 N-------------------NCEFKKGTSVLLDLYGTNHDPRLWDHPDEFRPERFAERE- 343
Query: 226 ANRHYYSFVPFSAGP----RSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDI 281
+ + +P G C G + +K L ++ P + + L +
Sbjct: 344 --ENLFDMIPQGGGHAEKGHRCPGEGITIEVMKASLDFLVHQIEYDVPEQSLHYSLAR-M 400
Query: 282 ILKRTDGFKVKLTPRK 297
GF + RK
Sbjct: 401 PSLPESGFVMSGIRRK 416
>3awm_A Fatty acid alpha-hydroxylase; cytochrome P450, peroxygenase,
oxidoreductase; HET: HEM PLM; 1.65A {Sphingomonas
paucimobilis} PDB: 3awq_A* 3awp_A*
Length = 415
Score = 153 bits (388), Expect = 9e-44
Identities = 32/254 (12%), Positives = 64/254 (25%), Gaps = 46/254 (18%)
Query: 47 EDVGEKKRLAFLDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHP 106
+ L + + A +F + T
Sbjct: 202 AGSIGSGSGTAAYAIAWHRDRHDDLLSPHVAAVELVNVLRPTVAIAVYITFVAHALQTCS 261
Query: 107 EIQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLN 166
I+A ++Q+ Y E + E R +P P + Q+ +
Sbjct: 262 GIRAALVQQ-------------------PDYAELFVQEVRRFYPFFPAVVARASQDFEWE 302
Query: 167 SCDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCA 226
+ P VV+ Y + T+ +P + P+ F
Sbjct: 303 -------------------GMAFPEGRQVVLDLYGSNHDAATWADPQEFRPERFRAWD-- 341
Query: 227 NRHYYSFVPFSAGP----RSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDII 282
++F+P G C G + +KV ++ P + +
Sbjct: 342 -EDSFNFIPQGGGDHYLGHRCPGEWIVLAIMKVAAHLLVNAMRYDVPDQDLSIDFAR-LP 399
Query: 283 LKRTDGFKVKLTPR 296
GF ++
Sbjct: 400 ALPKSGFVMRNVHI 413
>3b98_A Prostaglandin I2 synthase; prostacyclin synthase, cytochrome P450
8A1, CYP8A1, isomerase; HET: HEM; 2.08A {Danio rerio}
PDB: 3b99_A*
Length = 475
Score = 150 bits (381), Expect = 3e-42
Identities = 48/274 (17%), Positives = 91/274 (33%), Gaps = 37/274 (13%)
Query: 39 LKDDLDVDEDVGEKKRLAFLDLLIESAQ-NGVVLTDEEIKEQVDTIMFEGHDTTAAGSSF 97
L L + + ++L ++ Q G + E + + ++ + +
Sbjct: 218 LWKWLTPSGLDRKPREQSWLGSYVKQLQDEG--IDAEMQRRAMLLQLWVTQGNAGPAAFW 275
Query: 98 FLCVMGTHPEIQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIAR 157
+ + THPE V +EI + + + ETLR+ I R
Sbjct: 276 VMGYLLTHPEALRAVREEIQ----GGKHLRLEERQKNTPVFDSVLWETLRLTAAAL-ITR 330
Query: 158 ELQQEVKLNSCDLTIPANCTQEVKLNSCDLTIPANCTV-VIGTYKIHRQPDTYPNPDVYN 216
++ Q+ K+ + + + + V P + P+++
Sbjct: 331 DVTQDKKICLSNGQ--------------EYHLRRGDRLCVFPFISPQMDPQIHQQPEMFQ 376
Query: 217 PDNFLPE---------KCANRHYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVH 267
D FL K R Y VP+ C GR +A+ +K ++ TIL F V
Sbjct: 377 FDRFLNADRTEKKDFFKNGARVKYPSVPWGTEDNLCPGRHFAVHAIKELVFTILTRFDVE 436
Query: 268 -----SPTKLEDWKLQGDIILKRTDGFKVKLTPR 296
+ L D G IL+ +++ R
Sbjct: 437 LCDKNATVPLVDPSRYGFGILQPAGDLEIRYRIR 470
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1,
P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme
protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Length = 494
Score = 131 bits (331), Expect = 6e-35
Identities = 59/252 (23%), Positives = 105/252 (41%), Gaps = 29/252 (11%)
Query: 56 AFLDLLIESAQNG-------VVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEI 108
+ + S +L+D I + I G +TT + + L + +P++
Sbjct: 247 TLMQAKMNSDNGNAGPDQDSELLSDNHILTTIGDIFGAGVETTTSVVKWTLAFLLHNPQV 306
Query: 109 QAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSC 168
+ K+ +EID+ G S P D + +E I E LR+ P P
Sbjct: 307 KKKLYEEIDQNVGFSRTPT-ISDRNRLLLLEATIREVLRLRPVAP--------------- 350
Query: 169 DLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPE--KCA 226
+ IP + + + + V+I + +H + PD + P+ FL
Sbjct: 351 -MLIPHKANVDSSIG--EFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQL 407
Query: 227 NRHYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDI-ILKR 285
S++PF AGPRSC+G A +L +I++ +L+ F + P + L+G ++
Sbjct: 408 ISPSVSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFDLEVPDDGQLPSLEGIPKVVFL 467
Query: 286 TDGFKVKLTPRK 297
D FKVK+ R+
Sbjct: 468 IDSFKVKIKVRQ 479
>3qz1_A Steroid 21-hydroxylase; P450 monooxygenase, oxidoreductase; HET:
HEM 3QZ; 3.00A {Bos taurus}
Length = 496
Score = 130 bits (328), Expect = 2e-34
Identities = 71/322 (22%), Positives = 117/322 (36%), Gaps = 59/322 (18%)
Query: 1 MLNSIPI----PTIGIKEEKKAEEKVKD---KTVVEGLSYGQSSGLKDDLDVDE--DVGE 51
+L+ +P P G+ K+A E K + K+ + + D
Sbjct: 207 ILDMVPFLRFFPNPGLWRLKQAIENRDHMVEKQLRR---------HKESMVAGQWRD--- 254
Query: 52 KKRLAFLDLLI------ESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTH 105
D ++ + L + + V + G +TTA+ S+ + + H
Sbjct: 255 -----MTDYMLQGVGRQRVEEGPGQLLEGHVHMSVVDLFIGGTETTASTLSWAVAFLLHH 309
Query: 106 PEIQAKVIQEIDEIFG--DSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEV 163
PEIQ ++ +E+D G S T++D + + I E LR+ P VP
Sbjct: 310 PEIQRRLQEELDRELGPGASCSRVTYKDRARLPLLNATIAEVLRLRPVVP---------- 359
Query: 164 KLNSCDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPE 223
L +P T+ + IP V+ H + P + PD FL
Sbjct: 360 ------LALPHRTTRPSSIF--GYDIPEGMVVIPNLQGAHLDETVWEQPHEFRPDRFLEP 411
Query: 224 KCANRHYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDIIL 283
+ F G R C+G A L+L V+L+ +L+ FT+ P LQ D
Sbjct: 412 GANPS----ALAFGCGARVCLGESLARLELFVVLARLLQAFTLLPPPVGALPSLQPDPYC 467
Query: 284 KRT---DGFKVKLTPRKKQTVA 302
F+V+L PR + A
Sbjct: 468 GVNLKVQPFQVRLQPRGVEAGA 489
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 126 bits (318), Expect = 4e-33
Identities = 67/286 (23%), Positives = 111/286 (38%), Gaps = 53/286 (18%)
Query: 1 MLNSIPI----PTIGIKEEKKAEEKVKD---KTVVEGLSYGQSSGLKDDLDVDE--DVGE 51
L+ PI P ++ K ++ KTV E D D + D
Sbjct: 211 PLDFFPILRYLPNPALQRFKAFNQRFLWFLQKTVQE---------HYQDFDKNSVRD--- 258
Query: 52 KKRLAFLD-LLIESAQ----NGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHP 106
L S + +G ++ E+I V+ I G DT S+ L + T P
Sbjct: 259 -----ITGALFKHSKKGPRASGNLIPQEKIVNLVNDIFGAGFDTVTTAISWSLMYLVTKP 313
Query: 107 EIQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLN 166
EIQ K+ +E+D + G RP D ++ Y+E I+ET R +P
Sbjct: 314 EIQRKIQKELDTVIGRERRPR-LSDRPQLPYLEAFILETFRHSSFLP------------- 359
Query: 167 SCDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEK-- 224
TIP + T++ LN IP C V + ++++ P+ + +P + P+ FL
Sbjct: 360 ---FTIPHSTTRDTTLN--GFYIPKKCCVFVNQWQVNHDPELWEDPSEFRPERFLTADGT 414
Query: 225 -CANRHYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSP 269
+ F G R C+G A ++ + L+ +L+ P
Sbjct: 415 AINKPLSEKMMLFGMGKRRCIGEVLAKWEIFLFLAILLQQLEFSVP 460
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 125 bits (317), Expect = 4e-33
Identities = 58/252 (23%), Positives = 103/252 (40%), Gaps = 34/252 (13%)
Query: 56 AFLDLLIESAQNGVV-LTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQ 114
A+LD + + + + E + V ++ G +TT + + M +P IQ +V +
Sbjct: 253 AYLDEMDQGKNDPSSTFSKENLIFSVGELIIAGTETTTNVLRWAILFMALYPNIQGQVQK 312
Query: 115 EIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPA 174
EID I G + +P + D +M Y E + E LR VP L I
Sbjct: 313 EIDLIMGPNGKPS-WDDKCKMPYTEAVLHEVLRFCNIVP----------------LGIFH 355
Query: 175 NCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFV 234
+++ + +IP TV+ Y +H + +P+V++P+ FL + V
Sbjct: 356 ATSEDAVVR--GYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALV 413
Query: 235 PFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDIILKRTDG------ 288
PFS G R C+G A +++ + + +L+ F +H P + LK G
Sbjct: 414 PFSLGRRHCLGEHLARMEMFLFFTALLQRFHLHFP---HELVPD----LKPRLGMTLQPQ 466
Query: 289 -FKVKLTPRKKQ 299
+ + R
Sbjct: 467 PYLICAERRHHH 478
>3tbg_A Cytochrome P450 2D6; monooxygenase, thioridazine, oxidoreductase;
HET: RTZ HEM; 2.10A {Homo sapiens} PDB: 3qm4_A* 2f9q_A*
Length = 479
Score = 125 bits (317), Expect = 5e-33
Identities = 58/243 (23%), Positives = 106/243 (43%), Gaps = 21/243 (8%)
Query: 56 AFLDLLIESAQNGVV-LTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQ 114
AFL + ++ N DE ++ V + G TT+ ++ L +M HP++Q +V Q
Sbjct: 252 AFLAEMEKAKGNPESSFNDENLRIVVADLFSAGMVTTSTTLAWGLLLMILHPDVQRRVQQ 311
Query: 115 EIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPA 174
EID++ G RP D M Y I E R VP L +
Sbjct: 312 EIDDVIGQVRRPE-MGDQAHMPYTTAVIHEVQRFGDIVP----------------LGVTH 354
Query: 175 NCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFV 234
++++++ IP T++ + + + P ++P++FL + +F+
Sbjct: 355 MTSRDIEVQ--GFRIPKGTTLITNLSSVLKDEAVWEKPFRFHPEHFLDAQGHFVKPEAFL 412
Query: 235 PFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDI-ILKRTDGFKVKL 293
PFSAG R+C+G A ++L + +++L++F+ PT G L +++
Sbjct: 413 PFSAGRRACLGEPLARMELFLFFTSLLQHFSFSVPTGQPRPSHHGVFAFLVSPSPYELCA 472
Query: 294 TPR 296
PR
Sbjct: 473 VPR 475
>3pm0_A Cypib1, cytochrome P450 1B1; CYP1B1, monooxygenase,
alpha-naphthoflavone, 17BETA-estradiol, oxidoreductase;
HET: HEM BHF; 2.70A {Homo sapiens}
Length = 507
Score = 125 bits (316), Expect = 7e-33
Identities = 50/238 (21%), Positives = 95/238 (39%), Gaps = 23/238 (9%)
Query: 63 ESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGD 122
+S G L E + + I DT + + L + +P++Q +V E+D++ G
Sbjct: 267 DSHGGGARLDLENVPATITDIFGASQDTLSTALQWLLLLFTRYPDVQTRVQAELDQVVGR 326
Query: 123 SDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKL 182
PC D + Y+ + E +R VP +TIP T +
Sbjct: 327 DRLPC-MGDQPNLPYVLAFLYEAMRFSSFVP----------------VTIPHATTANTSV 369
Query: 183 NSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYS--FVPFSAGP 240
IP + V + + ++ P +PNP+ ++P FL + + + FS G
Sbjct: 370 L--GYHIPKDTVVFVNQWSVNHDPLKWPNPENFDPARFLDKDGLINKDLTSRVMIFSVGK 427
Query: 241 RSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDI-ILKRTDGFKVKLTPRK 297
R C+G + + ++L + +S + + K+ + + FKV +T R+
Sbjct: 428 RRCIGEELSKMQLFLFISILAHQCDFRANPNEPA-KMNFSYGLTIKPKSFKVNVTLRE 484
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 118 bits (298), Expect = 2e-30
Identities = 54/247 (21%), Positives = 99/247 (40%), Gaps = 22/247 (8%)
Query: 56 AFLDLLIESAQNGVV-LTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQ 114
+L + + + + + V ++ F G +TT+ + +M +P + +V +
Sbjct: 248 VYLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKYPHVTERVQK 307
Query: 115 EIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPA 174
EI+++ G P D +M Y + I E R+ +P +P
Sbjct: 308 EIEQVIGSHRPPA-LDDRAKMPYTDAVIHEIQRLGDLIP----------------FGVPH 350
Query: 175 NCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFV 234
T++ + IP N V P + P+ +NP +FL A + F+
Sbjct: 351 TVTKDTQFR--GYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFM 408
Query: 235 PFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDI--ILKRTDGFKVK 292
PFS G R C+G A +L + +TIL+NF++ SP ED L + ++++
Sbjct: 409 PFSLGKRICLGEGIARTELFLFFTTILQNFSIASPVPPEDIDLTPRESGVGNVPPSYQIR 468
Query: 293 LTPRKKQ 299
R
Sbjct: 469 FLARHHH 475
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 118 bits (298), Expect = 2e-30
Identities = 57/228 (25%), Positives = 102/228 (44%), Gaps = 21/228 (9%)
Query: 71 LTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSDRPCTFQ 130
T E ++ + G +TT+ + L ++ HPE+ AKV +EI+ + G + PC Q
Sbjct: 265 FTIESLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEIERVIGRNRSPC-MQ 323
Query: 131 DTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKLNSCDLTIP 190
D M Y + + E R +P ++P T ++K + IP
Sbjct: 324 DRSHMPYTDAVVHEVQRYIDLLP----------------TSLPHAVTCDIKFR--NYLIP 365
Query: 191 ANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFSAGPRSCVGRKYAM 250
T++I + +PNP++++P +FL E + F+PFSAG R CVG A
Sbjct: 366 KGTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEALAG 425
Query: 251 LKLKVILSTILRNFTVHSPTKLEDWKLQGDI--ILKRTDGFKVKLTPR 296
++L + L++IL+NF + S ++ + +++ P
Sbjct: 426 MELFLFLTSILQNFNLKSLVDPKNLDTTPVVNGFASVPPFYQLCFIPI 473
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 118 bits (297), Expect = 3e-30
Identities = 59/244 (24%), Positives = 101/244 (41%), Gaps = 22/244 (9%)
Query: 56 AFLDLLIESAQNGV-VLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQ 114
L + + + + T + I V + F G +TT+ + L ++ +PEI+ K+ +
Sbjct: 247 CLLVEMEKEKHSAERLYTMDGITVTVADLFFAGTETTSTTLRYGLLILMKYPEIEEKLHE 306
Query: 115 EIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPA 174
EID + G S P +D EM YM+ + E R VP +P
Sbjct: 307 EIDRVIGPSRIPA-IKDRQEMPYMDAVVHEIQRFITLVP----------------SNLPH 349
Query: 175 NCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFV 234
T++ IP VV + +P+P+ + P++FL E ++ F
Sbjct: 350 EATRDTIFR--GYLIPKGTVVVPTLDSVLYDNQEFPDPEKFKPEHFLNENGKFKYSDYFK 407
Query: 235 PFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDI--ILKRTDGFKVK 292
PFS G R C G A ++L ++L IL++F + +D L +K+
Sbjct: 408 PFSTGKRVCAGEGLARMELFLLLCAILQHFNLKPLVDPKDIDLSPIHIGFGCIPPRYKLC 467
Query: 293 LTPR 296
+ PR
Sbjct: 468 VIPR 471
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 115 bits (290), Expect = 2e-29
Identities = 55/212 (25%), Positives = 94/212 (44%), Gaps = 21/212 (9%)
Query: 87 GHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETL 146
G +T + + ++ HPE++AKV +EID + G + +P F+D +M YME I E
Sbjct: 280 GTETVSTTLRYGFLLLMKHPEVEAKVHEEIDRVIGKNRQPK-FEDRAKMPYMEAVIHEIQ 338
Query: 147 RMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQP 206
R +P +++ ++ K D +P V + R P
Sbjct: 339 RFGDVIP----------------MSLARRVKKDTKFR--DFFLPKGTEVYPMLGSVLRDP 380
Query: 207 DTYPNPDVYNPDNFLPEKCANRHYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTV 266
+ NP +NP +FL EK + +FVPFS G R+C G A ++L + +T+++NF +
Sbjct: 381 SFFSNPQDFNPQHFLNEKGQFKKSDAFVPFSIGKRNCFGEGLARMELFLFFTTVMQNFRL 440
Query: 267 HSPTKLEDWKLQGDI--ILKRTDGFKVKLTPR 296
S +D + + + PR
Sbjct: 441 KSSQSPKDIDVSPKHVGFATIPRNYTMSFLPR 472
>3nc3_A Cytochrome P450 CYPX; cytochrome P450 oxidase, HAEM protein,
oxidoreductase; HET: HEM; 2.66A {Bacillus subtilis} PDB:
3nc5_A* 3nc6_A* 3nc7_A*
Length = 441
Score = 64.3 bits (157), Expect = 8e-12
Identities = 42/214 (19%), Positives = 78/214 (36%), Gaps = 50/214 (23%)
Query: 59 DL---LIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQE 115
DL L S G+ L+D++I + ++ + + + + +PE V+ +
Sbjct: 239 DLISILCTSEYEGMALSDKDILALILNVLLAATEPADKTLALMIYHLLNNPEQMNDVLAD 298
Query: 116 IDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPAN 175
+ R I ETLR PPV +I R+L Q+ +
Sbjct: 299 RSLV-------------------PRAIAETLRYKPPVQLIPRQLSQDTVV---------- 329
Query: 176 CTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPD-----NFLPEKCANRHY 230
+ I + V +R P+ + PDV+N A RH
Sbjct: 330 ---------GGMEIKKDTIVFCMIGAANRDPEAFEQPDVFNIHREDLGIKSAFSGAARH- 379
Query: 231 YSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
+ F +G +CVG +A +++++ + +L
Sbjct: 380 ---LAFGSGIHNCVGTAFAKNEIEIVANIVLDKM 410
>3oft_A Cytochrome P450, CYP101C1; oxidoreductase; HET: HEM; 1.90A
{Novosphingobium aromaticivorans} PDB: 3ofu_A*
Length = 396
Score = 63.8 bits (156), Expect = 1e-11
Identities = 37/207 (17%), Positives = 63/207 (30%), Gaps = 46/207 (22%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEID 117
++ G T +E + ++F G DT AA + HPE Q +
Sbjct: 206 FSRILSEPVGGRPWTVDEARRMCRNLLFGGLDTVAAMIGMVALHLARHPEDQRLLR---- 261
Query: 118 EIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCT 177
+RP + E +R +P V ++R +V +
Sbjct: 262 ------ERPDLIPAAAD---------ELMRRYPTV-AVSRNAVADVDAD----------- 294
Query: 178 QEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFS 237
+TI V + + + P ++ P+ D RH
Sbjct: 295 --------GVTIRKGDLVYLPSVLHNLDPASFEAPEEVRFD---RGLAPIRH----TTMG 339
Query: 238 AGPRSCVGRKYAMLKLKVILSTILRNF 264
G CVG A +++ V L L
Sbjct: 340 VGAHRCVGAGLARMEVIVFLREWLGGM 366
>2zwu_A Camphor 5-monooxygenase; P450CAM, camphor-hydroxylase, heme, iron,
metal-binding, oxidoreductase, substrate-soaking,
cytoplasm; HET: HEM CAM; 1.30A {Pseudomonas putida} PDB:
1gem_A* 1iwi_A* 2l8m_A* 2z97_A* 1gek_A* 2zax_A* 2zaw_A*
2zwt_A* 1rf9_A* 1lwl_A* 1iwk_A* 1iwj_A* 2zui_A* 2fe6_A*
1geb_A* 1yrc_A* 1noo_A* 1cp4_A* 1pha_A* 1phc_A* ...
Length = 415
Score = 63.5 bits (155), Expect = 1e-11
Identities = 31/207 (14%), Positives = 59/207 (28%), Gaps = 48/207 (23%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEID 117
+ ++ NG +T +E K ++ G DT SF + + PE + ++I+
Sbjct: 221 ISIVANGQVNGRPITSDEAKRMCGLLLVGGLDTVVNFLSFSMEFLAKSPEHRQELIE--- 277
Query: 118 EIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCT 177
+R + E LR F V R L + + +
Sbjct: 278 ----RPER------------IPAACEELLRRFSLV-ADGRILTSDYEFHGV--------- 311
Query: 178 QEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFS 237
+ +++ P + + H F
Sbjct: 312 ----------QLKKGDQILLPQMLSGLDERENACPMHVDFS-----RQKVSH----TTFG 352
Query: 238 AGPRSCVGRKYAMLKLKVILSTILRNF 264
G C+G+ A ++ V L L
Sbjct: 353 HGSHLCLGQHLARREIIVTLKEWLTRI 379
>3lxh_A Cytochrome P450; heme, iron, metal-binding, monooxygena
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans} PDB: 3lxi_A*
Length = 421
Score = 61.9 bits (151), Expect = 4e-11
Identities = 31/207 (14%), Positives = 66/207 (31%), Gaps = 48/207 (23%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEID 117
+ ++ +G + D+ V ++ G DT F + + HPE A++ +
Sbjct: 228 ITRILNVEIDGKPMPDDRALGLVSLLLLGGLDTVVNFLGFMMIYLSRHPETVAEMRR--- 284
Query: 118 EIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCT 177
+ + ++R + E R F V AR + +++ +
Sbjct: 285 ----EPLK------------LQRGVEELFRRFAVVS-DARYVVSDMEFHGT--------- 318
Query: 178 QEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFS 237
+ +++ T + +P + + H F+
Sbjct: 319 ----------MLKEGDLILLPTALHGLDDRHHDDPMTVDLS-----RRDVTH----STFA 359
Query: 238 AGPRSCVGRKYAMLKLKVILSTILRNF 264
GP C G A L++ V+L L
Sbjct: 360 QGPHRCAGMHLARLEVTVMLQEWLARI 386
>4dxy_A Cytochrome P450, CYP101D2; cytochrome P450 mutant, HAEM-dependent,
mono-oxygenases, oxidoreductase; HET: HEM; 2.00A
{Novosphingobium aromaticivorans} PDB: 3nv6_A* 3nv5_A*
Length = 417
Score = 61.9 bits (151), Expect = 5e-11
Identities = 35/207 (16%), Positives = 68/207 (32%), Gaps = 48/207 (23%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEID 117
+ L++ S NG + ++ + + ++ G DT SFF+ + HPE+ A++ +
Sbjct: 227 ITLMVNSEINGERIAHDKAQGLISLLLLGGLDTVVNFLSFFMIHLARHPELVAELRSDPL 286
Query: 118 EIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCT 177
++ R E R FP V AR + ++ +
Sbjct: 287 KL-------------------MRGAEEMFRRFPVV-SEARMVAKDQEYKGV--------- 317
Query: 178 QEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFS 237
+ +++ T P P + + + H F
Sbjct: 318 ----------FLKRGDMILLPTALHGLDDAANPEPWKLDFS-----RRSISH----STFG 358
Query: 238 AGPRSCVGRKYAMLKLKVILSTILRNF 264
GP C G A +++ V L L+
Sbjct: 359 GGPHRCAGMHLARMEVIVTLEEWLKRI 385
>4fb2_A P450CIN; heme, monooxygenase, cindoxin, oxidoreductase; HET: HEM
EDO; 1.37A {Citrobacter braakii} PDB: 1t2b_A* 3bdz_A*
3be0_A*
Length = 398
Score = 60.7 bits (148), Expect = 1e-10
Identities = 34/207 (16%), Positives = 71/207 (34%), Gaps = 48/207 (23%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEID 117
+ +I S +G L+++++ ++ G D TA S + E++ ++I +
Sbjct: 204 MSRVIMSKIDGESLSEDDLIGFFTILLLGGIDNTARFLSSVFWRLAWDIELRRRLIAHPE 263
Query: 118 EIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCT 177
I + E LR + P + R + QEV +
Sbjct: 264 LI-------------------PNAVDELLRFYGPAM-VGRLVTQEVTVG----------- 292
Query: 178 QEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFS 237
D+T+ T ++ R + +PD + + NRH +
Sbjct: 293 --------DITMKPGQTAMLWFPIASRDRSAFDSPDNIVIE-----RTPNRH----LSLG 335
Query: 238 AGPRSCVGRKYAMLKLKVILSTILRNF 264
G C+G ++ +V ++ L+
Sbjct: 336 HGIHRCLGAHLIRVEARVAITEFLKRI 362
>4dnj_A Putative cytochrome P450; oxidoreductase; HET: HEM ANN; 1.80A
{Rhodopseudomonas palustris} PDB: 2fr7_A* 4do1_A*
4dnz_A*
Length = 412
Score = 58.8 bits (143), Expect = 4e-10
Identities = 45/241 (18%), Positives = 84/241 (34%), Gaps = 61/241 (25%)
Query: 61 LIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIF 120
I + + +T EE V +++ G DTT G + + + P+ A++
Sbjct: 226 CIHAFSDTGEITPEEAPLLVRSLLSAGLDTTVNGIAAAVYCLARFPDEFARLRA------ 279
Query: 121 GDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEV 180
D E +R PV R ++V+L
Sbjct: 280 -DPSL------------ARNAFEEAVRFESPVQTFFRTTTRDVELA-------------- 312
Query: 181 KLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFSAGP 240
TI V++ +R P + +PD Y+ + + H V F +G
Sbjct: 313 -----GATIGEGEKVLMFLGSANRDPRRWDDPDRYDIT-----RKTSGH----VGFGSGV 358
Query: 241 RSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDIILKRTD---GFK---VKLT 294
CVG+ A L+ +V+L+ + R ++ G + + + G + ++LT
Sbjct: 359 HMCVGQLVARLEGEVVLAALARKV--------AAIEIAGPLKRRFNNTLRGLESLPIQLT 410
Query: 295 P 295
P
Sbjct: 411 P 411
>2xkr_A CYP142, putative cytochrome P450 142; oxidoreductase; HET: HEM;
1.60A {Mycobacterium tuberculosis}
Length = 398
Score = 56.5 bits (137), Expect = 3e-09
Identities = 35/209 (16%), Positives = 70/209 (33%), Gaps = 50/209 (23%)
Query: 59 DL---LIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQE 115
DL L+ S +G L+D+E+ + I+ G +TT S + + + + +
Sbjct: 200 DLVSVLVSSEVDGERLSDDELVMETLLILIGGDETTRHTLSGGTEQLLRNRDQWDLLQR- 258
Query: 116 IDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPAN 175
D + I E LR PV + R L + + +
Sbjct: 259 ------DPSL------------LPGAIEEMLRWTAPVKNMCRVLTADTEFH--------- 291
Query: 176 CTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVP 235
+ A +++ + + P+ ++ + N H +
Sbjct: 292 ----------GTALCAGEKMMLLFESANFDEAVFCEPEKFDVQ-----RNPNSH----LA 332
Query: 236 FSAGPRSCVGRKYAMLKLKVILSTILRNF 264
F G C+G + A L+L ++ +LR
Sbjct: 333 FGFGTHFCLGNQLARLELSLMTERVLRRL 361
>2jjn_A Cytochrome P450 113A1; oxidoreductase, iron, heme, monooxygenase,
metal-binding, AN biosynthesis, TIE-ROD mechanism of
action; HET: HEM; 1.59A {Saccharopolyspora erythraea}
PDB: 2jjo_A* 2jjp_A* 2xfh_A* 2wio_A* 2vrv_A*
Length = 411
Score = 56.5 bits (137), Expect = 3e-09
Identities = 47/256 (18%), Positives = 77/256 (30%), Gaps = 70/256 (27%)
Query: 59 DL---LIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQE 115
DL L+ + +G L DEE ++ GH TT + + HP +
Sbjct: 211 DLISRLVLAEVDGRALDDEEAANFSTALLLAGHITTTVLLGNIVRTLDEHPAHWDAAAE- 269
Query: 116 IDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPAN 175
D R + + E LR PP P + R + ++
Sbjct: 270 ------DPGR------------IPAIVEEVLRYRPPFPQMQRTTTKATEVA--------- 302
Query: 176 CTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPD---NFLPEKCANRHYYS 232
+ IPA+ V +R D + +PD ++P
Sbjct: 303 ----------GVPIPADVMVNTWVLSANRDSDAHDDPDRFDPSRKSG------GAAQ--- 343
Query: 233 FVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDIILKRTD----- 287
+ F G C+G A L+ +V L I+ F + D R
Sbjct: 344 -LSFGHGVHFCLGAPLARLENRVALEEIIARF--------GRLTVDRDDERLRHFEQIVL 394
Query: 288 GFK---VKLTPRKKQT 300
G + V +Q+
Sbjct: 395 GTRHLPVLAGSSPRQS 410
>1lfk_A OXYB, P450 monooxygenase; oxidative phenol coupling reaction P450
vancomycin, oxidoreductase; HET: HEM; 1.70A
{Amycolatopsis orientalis} SCOP: a.104.1.1 PDB: 1lg9_A*
1lgf_A*
Length = 398
Score = 56.1 bits (136), Expect = 4e-09
Identities = 44/211 (20%), Positives = 70/211 (33%), Gaps = 56/211 (26%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEID 117
+ ++ A+ G TDEE++ +M G D + + M HPE +ID
Sbjct: 210 IGAVV--AEYGDDATDEELRGFCVQVMLAGDDNISGMIGLGVLAMLRHPE-------QID 260
Query: 118 EIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPV----IARELQQEVKLNSCDLTIP 173
GD +R + E +R IARE DLT+
Sbjct: 261 AFRGDEQS------------AQRAVDELIRYLTVPYSPTPRIARE----------DLTL- 297
Query: 174 ANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSF 233
I +V+ +R P P+ D + + H
Sbjct: 298 -----------AGQEIKKGDSVICSLPAANRDPALAPDVDRLDVT-----REPIPH---- 337
Query: 234 VPFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
V F G C+G A L+L+ + + + R F
Sbjct: 338 VAFGHGVHHCLGAALARLELRTVFTELWRRF 368
>2wiy_A XPLA-heme, cytochrome P450-like protein XPLA; CYT-P450, RDX,
bioremediation, electron transport; HET: HEM; 1.49A
{Rhodococcus} PDB: 2wiv_A*
Length = 394
Score = 55.7 bits (135), Expect = 5e-09
Identities = 34/209 (16%), Positives = 67/209 (32%), Gaps = 49/209 (23%)
Query: 59 DL---LIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQE 115
L L+++A+ G +T+ E + GH + + + PE
Sbjct: 204 GLADSLLDAARAGE-ITESEAIATILVFYAVGHMAIGYLIASGIELFARRPE-------V 255
Query: 116 IDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPAN 175
D I E +RM PP R ++V++
Sbjct: 256 FTAFRNDESA------------RAAIINEMVRMDPPQLSFLRFPTEDVEIG--------- 294
Query: 176 CTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVP 235
+ I A + +R P+ + +PDV++ A+R+ +
Sbjct: 295 ----------GVLIEAGSPIRFMIGAANRDPEVFDDPDVFDHTR---PPAASRN----LS 337
Query: 236 FSAGPRSCVGRKYAMLKLKVILSTILRNF 264
F GP SC G+ + + + + + +
Sbjct: 338 FGLGPHSCAGQIISRAEATTVFAVLAERY 366
>3mgx_A Putative P450 monooxygenase; cytochrome P450 oxidase, HAEM protein,
vancomycin biosynthes carrier protein, oxidoreductase;
HET: HEM; 2.10A {Amycolatopsis balhimycina}
Length = 415
Score = 55.8 bits (135), Expect = 5e-09
Identities = 46/245 (18%), Positives = 82/245 (33%), Gaps = 64/245 (26%)
Query: 59 DLLIESA-QNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEID 117
DL+ S LT +++ D ++ G++TT + + + T P + +
Sbjct: 228 DLV--STLVTDDDLTIDDVLLNCDNVLIGGNETTRHAITGAVHALATVPGLLTALRD--- 282
Query: 118 EIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCT 177
S ++ + E LR P + R +V +N
Sbjct: 283 ----GSAD------------VDTVVEEVLRWTSPAMHVLRVTTADVTIN----------- 315
Query: 178 QEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFS 237
+P+ VV +R P + +PD FLP + NRH + F
Sbjct: 316 --------GRDLPSGTPVVAWLPAANRDPAEFDDPDT-----FLPGRKPNRH----ITFG 358
Query: 238 AGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDIILKRTD---GFK---V 291
G C+G A ++L V+L + L+ + R G++ V
Sbjct: 359 HGMHHCLGSALARIELSVVLRVLAERV--------SRVDLEREPAWLRAIVVQGYRELPV 410
Query: 292 KLTPR 296
+ T R
Sbjct: 411 RFTGR 415
>3ejb_B Biotin biosynthesis cytochrome P450-like enzyme; protein-protein
complex, cytochrome P450 fold, carrier protein, 4-helix
bundle, cytoplasm; HET: ZMP HTG HEM; 2.00A {Bacillus
subtilis} PDB: 3ejd_B* 3eje_B*
Length = 404
Score = 55.7 bits (135), Expect = 5e-09
Identities = 42/207 (20%), Positives = 76/207 (36%), Gaps = 48/207 (23%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEID 117
+ +L++ + LT+EE + GH+TT S + + HPE K+ +
Sbjct: 207 ISMLLK-GREKDKLTEEEAASTCILLAIAGHETTVNLISNSVLCLLQHPEQLLKLRE--- 262
Query: 118 EIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCT 177
+ D + + E LR P + AR +++ +
Sbjct: 263 ----NPDL------------IGTAVEECLRYESPTQMTARVASEDIDI------------ 294
Query: 178 QEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFS 237
C +TI V + +R P + NPDV F + N H + F
Sbjct: 295 -------CGVTIRQGEQVYLLLGAANRDPSIFTNPDV-----FDITRSPNPH----LSFG 338
Query: 238 AGPRSCVGRKYAMLKLKVILSTILRNF 264
G C+G A L+ ++ ++T+L+
Sbjct: 339 HGHHVCLGSSLARLEAQIAINTLLQRM 365
>3aba_A Cytochrome P450; oxidoreductase, heme, monooxygenase, macrolide,
filipi metal-binding, oxidoreductase-antibiotic complex;
HET: HEM FLI; 1.80A {Streptomyces avermitilis} PDB:
3e5j_A* 3e5k_A* 3e5l_A*
Length = 403
Score = 55.7 bits (135), Expect = 5e-09
Identities = 33/211 (15%), Positives = 64/211 (30%), Gaps = 54/211 (25%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEID 117
+ LI + V+ D + T++ HDTTA ++ P+ A +
Sbjct: 209 ISALITTEDPDGVVDDMFLMNAAGTLLIAAHDTTACMIGLGTALLLDSPDQLALLR---- 264
Query: 118 EIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPV----IARELQQEVKLNSCDLTIP 173
+ P + +E E LR +A D+ +
Sbjct: 265 ------EDPSLVGNAVE---------ELLRYLTIGQFGGERVATR----------DVEL- 298
Query: 174 ANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSF 233
+ I VV P P+ ++ + H
Sbjct: 299 -----------GGVRIAKGEQVVAHVLAADFDPAFVEEPERFDIT-----RRPAPH---- 338
Query: 234 VPFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
+ F G C+G++ A ++L+++ T+ R
Sbjct: 339 LAFGFGAHQCIGQQLARIELQIVFETLFRRL 369
>2z3t_A Cytochrome P450; monoxygenase, oxydoreductase, heme-enzyme,
oxidoreductase; HET: HEM; 1.90A {Streptomyces SP} PDB:
2z3u_A* 3a1l_A*
Length = 425
Score = 55.4 bits (134), Expect = 6e-09
Identities = 41/207 (19%), Positives = 72/207 (34%), Gaps = 47/207 (22%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEID 117
L LL+ + G L+ + I ++ GH+TT + + + H + +D
Sbjct: 226 LTLLVRARDTGSPLSVDGIVGTCVHLLTAGHETTTNFLAKAVLTLRAHRD-------VLD 278
Query: 118 EIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCT 177
E+ + + E +R PPV + R ++++L
Sbjct: 279 ELRTTPES------------TPAAVEELMRYDPPVQAVTRWAYEDIRL------------ 314
Query: 178 QEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFS 237
D IP VV +R P +P+PDV + + A R V F
Sbjct: 315 -------GDHDIPRGSRVVALLGSANRDPARFPDPDVLDVH-----RAAERQ----VGFG 358
Query: 238 AGPRSCVGRKYAMLKLKVILSTILRNF 264
G C+G A + ++ L +L
Sbjct: 359 LGIHYCLGATLARAEAEIGLRALLDGI 385
>3r9b_A Cytochrome P450 164A2; monooxygenase, oxidoreductase; HET: HEM D12;
1.89A {Mycobacterium smegmatis} PDB: 3r9c_A*
Length = 418
Score = 55.4 bits (134), Expect = 7e-09
Identities = 46/209 (22%), Positives = 75/209 (35%), Gaps = 50/209 (23%)
Query: 59 DL---LIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQE 115
DL L+ ++G LT++EI + ++ GH+TT + M P A +
Sbjct: 226 DLMSGLVAVEESGDQLTEDEIIATCNLLLIAGHETTVNLIANAALAMLRTPGQWAALAA- 284
Query: 116 IDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPAN 175
D R I ET+R PPV +++R ++ +
Sbjct: 285 ------DGSR------------ASAVIEETMRYDPPVQLVSRYAGDDLTIG--------- 317
Query: 176 CTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVP 235
T+P T+++ HR P PD ++PD + RH +
Sbjct: 318 ----------THTVPKGDTMLLLLAAAHRDPTIVGAPDRFDPD-----RAQIRH----LG 358
Query: 236 FSAGPRSCVGRKYAMLKLKVILSTILRNF 264
F G C+G A L+ V L + F
Sbjct: 359 FGKGAHFCLGAPLARLEATVALPALAARF 387
>3abb_A CYP105D6, cytochrome P450 hydroxylase; oxidoreductase, heme,
monooxygenase, macrolide, filipi metal-binding; HET:
HEM; 2.30A {Streptomyces avermitilis}
Length = 408
Score = 55.3 bits (134), Expect = 7e-09
Identities = 42/210 (20%), Positives = 66/210 (31%), Gaps = 53/210 (25%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEID 117
LD LI L +E+ ++ GH+TT + + HPE ++
Sbjct: 215 LDELIARQLEEGDLDHDEVVMIALVLLVAGHETTVNAIALGALTLIQHPEQIDVLL---- 270
Query: 118 EIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIAR---ELQQEVKLNSCDLTIPA 174
P +E E LR I R E D+ +
Sbjct: 271 ------RDPGAVSGVVE---------ELLRFTSVSDHIVRMAKE----------DIEV-- 303
Query: 175 NCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFV 234
TI A V++ ++R Y NPD+ F + A H V
Sbjct: 304 ----------GGATIKAGDAVLVSITLMNRDAKAYENPDI-----FDARRNARHH----V 344
Query: 235 PFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
F G C+G+ A +L++ L +
Sbjct: 345 GFGHGIHQCLGQNLARAELEIALGGLFARI 374
>1jfb_A Nitric-oxide reductase cytochrome P450 55A1; cytochrome P450NOR,
atomic resolutio structural genomics/proteomics
initiative, RSGI; HET: HEM; 1.00A {Fusarium oxysporum}
SCOP: a.104.1.1 PDB: 1jfc_A* 1gej_A* 1ged_A* 1ehe_A*
1gei_A* 1rom_A* 2rom_A* 1ehf_A* 1cl6_A* 1ehg_A* 1cmj_A*
1f25_A* 1f24_A* 1xqd_A* 1f26_A* 1cmn_A* 1ulw_A*
Length = 404
Score = 54.9 bits (133), Expect = 8e-09
Identities = 28/211 (13%), Positives = 62/211 (29%), Gaps = 52/211 (24%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEID 117
+ L + + + ++ G+ T + + + HP+ Q ++
Sbjct: 212 ISKLCTEQVKPGNIDKSDAVQIAFLLLVAGNATMVNMIALGVATLAQHPD-QLAQLKA-- 268
Query: 118 EIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPV----IARELQQEVKLNSCDLTIP 173
+ + + E R + A+E D+ I
Sbjct: 269 ----NPSL------------APQFVEELCRYHTASALAIKRTAKE----------DVMI- 301
Query: 174 ANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSF 233
D + AN ++ +R + + NPD +N + +
Sbjct: 302 -----------GDKLVRANEGIIASNQSANRDEEVFENPDEFNMNR---KWPPQDP---- 343
Query: 234 VPFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
+ F G C+ A +L + ST+ + F
Sbjct: 344 LGFGFGDHRCIAEHLAKAELTTVFSTLYQKF 374
>2cd8_A Cytochrome P450 monooxygenase; oxidoreductase, PIKC, macrolide
monooxygenase, antibiotic biosynthesis, heme, iron,
metal-binding; HET: HEM PXI; 1.7A {Streptomyces
venezuelae} PDB: 2c6h_A* 2bvj_A* 2ca0_A* 2c7x_A* 2vzm_A*
2vz7_A* 2vsj_A* 2wi9_A* 2whw_A*
Length = 436
Score = 55.0 bits (133), Expect = 8e-09
Identities = 42/213 (19%), Positives = 69/213 (32%), Gaps = 60/213 (28%)
Query: 59 DLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTA---AGSSFFLCVMGTHPEIQAKVIQE 115
L+ S ++G LT EE+ ++ GH+TT A + L +HP+ A +
Sbjct: 236 ALVRTSDEDGSRLTSEELLGMAHILLVAGHETTVNLIANGMYALL---SHPDQLAALR-- 290
Query: 116 IDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPV----IARELQQEVKLNSCDLT 171
+E E LR PV E +
Sbjct: 291 --------ADMTLLDGAVE---------EMLRYEGPVESATYRFPVE----------PVD 323
Query: 172 IPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYY 231
+ IPA TV++ HR P+ +P+P F + H
Sbjct: 324 L------------DGTVIPAGDTVLVVLADAHRTPERFPDPHR-----FDIRRDTAGH-- 364
Query: 232 SFVPFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
+ F G C+G A L+ ++ + +L
Sbjct: 365 --LAFGHGIHFCIGAPLARLEARIAVRALLERC 395
>2wm5_A CYP124, putative cytochrome P450 124; metal-binding,
oxidoreductase, omega-hydroxylation, iron, heme, fatty
acid, monooxygenase; HET: HEM; 1.50A {Mycobacterium
tuberculosis} PDB: 2wm4_A*
Length = 435
Score = 55.0 bits (133), Expect = 9e-09
Identities = 35/210 (16%), Positives = 71/210 (33%), Gaps = 50/210 (23%)
Query: 59 DL---LIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQE 115
DL L+E+ +G L+ EI ++ G++TT + + + +PE + + +
Sbjct: 244 DLTSSLVEAEVDGERLSSREIASFFILLVVAGNETTRNAITHGVLALSRYPEQRDRWWSD 303
Query: 116 IDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPAN 175
D + + E +R PV + R L Q+++L
Sbjct: 304 FDGL------------------APTAVEEIVRWASPVVYMRRTLTQDIELR--------- 336
Query: 176 CTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVP 235
+ A V + +R + +P ++ + N H +
Sbjct: 337 ----------GTKMAAGDKVSLWYCSANRDESKFADPWTFDLA-----RNPNPH----LG 377
Query: 236 FS-AGPRSCVGRKYAMLKLKVILSTILRNF 264
F G C+G A +++V + R
Sbjct: 378 FGGGGAHFCLGANLARREIRVAFDELRRQM 407
>2y5n_A MYCG, P-450-like protein; oxidoreductase, mycinamicin biosynthesis;
HET: HEM MYV; 1.62A {Micromonospora griseorubida} PDB:
2y46_A* 2y5z_A* 2y98_A* 2yca_A* 2ygx_A*
Length = 417
Score = 54.9 bits (133), Expect = 9e-09
Identities = 39/212 (18%), Positives = 80/212 (37%), Gaps = 55/212 (25%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEID 117
+ L+++ L+++E+ + ++ G+++T + F+ ++ T PE++ +++
Sbjct: 226 VSALVQARDQQDSLSEQELLDLAIGLLVAGYESTTTQIADFVYLLMTRPELRRQLL---- 281
Query: 118 EIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPV-----IARELQQEVKLNSCDLTI 172
DRP +E E R P A E D+T+
Sbjct: 282 ------DRPELIPSAVE---------ELTRWVPLGVGTAFPRYAVE----------DVTL 316
Query: 173 PANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYS 232
+TI A V+ T +R +P+ D ++ N+H
Sbjct: 317 ------------RGVTIRAGEPVLASTGAANRDQAQFPDADR-----IDVDRTPNQH--- 356
Query: 233 FVPFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
+ F G C+G A ++L+V L +L+
Sbjct: 357 -LGFGHGVHHCLGAPLARVELQVALEVLLQRL 387
>2z36_A MOXA, cytochrome P450 type compactin 3'',4''- hydroxylase; CYP105,
oxidoreductase; HET: HEM MES; 2.80A {Nonomuraea
recticatena}
Length = 413
Score = 54.9 bits (133), Expect = 9e-09
Identities = 39/211 (18%), Positives = 69/211 (32%), Gaps = 54/211 (25%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEID 117
I + L + ++ GH+TTA S + + +HPE V
Sbjct: 217 FSRQIARQRQEGTLDHAGLVSLAFLLLTAGHETTANMISLGVVGLLSHPEQLTVVK---- 272
Query: 118 EIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPV----IARELQQEVKLNSCDLTIP 173
P +E E LR F +A E D+ I
Sbjct: 273 ------ANPGRTPMAVE---------ELLRYFTIADGVTSRLATE----------DVEI- 306
Query: 174 ANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSF 233
++I A V++ + P + +P V + + + A H
Sbjct: 307 -----------GGVSIKAGEGVIVSMLSANWDPAVFKDPAVLDVE-----RGARHH---- 346
Query: 234 VPFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
+ F GP C+G+ A ++L+++ T+ R
Sbjct: 347 LAFGFGPHQCLGQNLARMELQIVFDTLFRRI 377
>2zbx_A Cytochrome P450-SU1; beta prism, heme, iron, metal-binding,
monooxygenase, oxidoreductase; HET: HEM; 1.50A
{Streptomyces griseolus} PDB: 2zby_A* 2zbz_A* 3cv8_A*
3cv9_A*
Length = 412
Score = 54.9 bits (133), Expect = 9e-09
Identities = 38/211 (18%), Positives = 70/211 (33%), Gaps = 54/211 (25%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEID 117
+ L+ + EE+ ++ GH+TTA+ +S + + HPE Q ++
Sbjct: 216 VGALVADQLANGEIDREELISTAMLLLIAGHETTASMTSLSVITLLDHPE-QYAALRA-- 272
Query: 118 EIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPV----IARELQQEVKLNSCDLTIP 173
D + + E LR + +A D+ +
Sbjct: 273 ----DRSL------------VPGAVEELLRYLAIADIAGGRVATA----------DIEV- 305
Query: 174 ANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSF 233
I A V++ +R Y +PD + A H
Sbjct: 306 -----------EGQLIRAGEGVIVVNSIANRDGTVYEDPDA-----LDIHRSARHH---- 345
Query: 234 VPFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
+ F G C+G+ A L+L+VIL+ ++
Sbjct: 346 LAFGFGVHQCLGQNLARLELEVILNALMDRV 376
>2rfb_A Cytochrome P450; heme, iron, metal-binding, monooxygenase,
oxidoreductase; HET: HEM; 2.50A {Picrophilus torridus}
PDB: 2rfc_A*
Length = 343
Score = 54.5 bits (132), Expect = 9e-09
Identities = 34/209 (16%), Positives = 70/209 (33%), Gaps = 53/209 (25%)
Query: 59 DL---LIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQE 115
+ L S+ LT +E + + ++ G++TT + V+ +P+I ++
Sbjct: 158 GIINVLAGSSLKNRKLTMDEKIKYIMLLIIGGNETTTNLIGNMIRVIDENPDIIDDALK- 216
Query: 116 IDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPAN 175
+R + ETLR + P+ +
Sbjct: 217 --------NRS-------------GFVEETLRYYSPIQFLPHRF---------------- 239
Query: 176 CTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVP 235
++ +N + I V++ +R + PD++ H +
Sbjct: 240 AAEDSYIN--NKKIKKGDQVIVYLGSANRDETFFDEPDLFKIGR------REMH----LA 287
Query: 236 FSAGPRSCVGRKYAMLKLKVILSTILRNF 264
F G C+G A L+ + L+ IL +F
Sbjct: 288 FGIGIHMCLGAPLARLEASIALNDILNHF 316
>2uuq_A CYP130, cytochrome P450 130; iron, heme, monooxygenase,
metal-binding, oxidoreductase, hypothetical protein;
HET: HEM; 1.46A {Mycobacterium tuberculosis} PDB:
2uvn_A* 2whf_A* 2wh8_A* 2wgy_A*
Length = 414
Score = 55.0 bits (133), Expect = 1e-08
Identities = 35/203 (17%), Positives = 67/203 (33%), Gaps = 48/203 (23%)
Query: 63 ESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGD 122
+G I T++ G+DT + ++ P+ + ++ D
Sbjct: 227 GVGADGDTAGTLSILAFTFTMVTGGNDTVTGMLGGSMPLLHRRPDQRRLLLD-------D 279
Query: 123 SDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKL 182
+ + + E LR+ PV +AR ++V +
Sbjct: 280 PEG------------IPDAVEELLRLTSPVQGLARTTTRDVTIG---------------- 311
Query: 183 NSCDLTIPANCTVVIGTYKIHRQPDTY-PNPDVYNPDNFLPEKCANRHYYSFVPFSAGPR 241
D TIPA V++ +R Y P+ + +C + FS G
Sbjct: 312 ---DTTIPAGRRVLLLYGSANRDERQYGPDAAELDVT-----RCPRNI----LTFSHGAH 359
Query: 242 SCVGRKYAMLKLKVILSTILRNF 264
C+G A ++ +V L+ +L
Sbjct: 360 HCLGAAAARMQCRVALTELLARC 382
>3p3o_A Cytochrome P450; monooxygenase, oxidoreductase; HET: HEM; 1.54A
{Streptomyces thioluteus} PDB: 3p3x_A* 3p3z_A* 3p3l_A*
Length = 416
Score = 54.6 bits (132), Expect = 1e-08
Identities = 43/216 (19%), Positives = 77/216 (35%), Gaps = 63/216 (29%)
Query: 59 DL---LIESAQNGVVLTDEEIKEQVDTIMFEGHDTTA---AGSSFFLCVMGTHPEIQAKV 112
DL ++ + +GV L D E++ V T++ G++TT A + + HP+ Q
Sbjct: 224 DLTSDIVRAFHDGV-LDDYELRTLVATVLVAGYETTNHQLALAMYDFA---QHPD-QWMK 278
Query: 113 IQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPV----IARELQQEVKLNSC 168
I+E + + + + E LR P +PV +A E
Sbjct: 279 IKE------NPEL------------APQAVEEVLRWSPTLPVTATRVAAE---------- 310
Query: 169 DLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANR 228
D + + IP V + + HR P + + D ++ K
Sbjct: 311 DFEV------------NGVRIPTGTPVFMCAHVAHRDPRVFADADRFDITV----KREAP 354
Query: 229 HYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
+ F GP C+G A L+L ++ +
Sbjct: 355 S----IAFGGGPHFCLGTALARLELTEAVAALATRL 386
>1ued_A P450 OXYC, P450 monooxygenase; cytochrome P450 vancomycin
biosynthesis, oxidoreductase; HET: HEM PG4; 1.90A
{Amycolatopsis orientalis} SCOP: a.104.1.1
Length = 406
Score = 54.2 bits (131), Expect = 1e-08
Identities = 41/198 (20%), Positives = 68/198 (34%), Gaps = 54/198 (27%)
Query: 71 LTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSDRPCTFQ 130
+TDEE+K ++ G +T A F + + +P +I+ +F ++
Sbjct: 230 VTDEELKGLCTALILGGVETVAGMIGFGVLALLDNPG-------QIELLFESPEK----- 277
Query: 131 DTLEMKYMERCIMETLRMFPPVPV----IARELQQEVKLNSCDLTIPANCTQEVKLNSCD 186
ER + E +R PV +A + D+ I
Sbjct: 278 -------AERVVNELVRYLSPVQAPNPRLAIK----------DVVI------------DG 308
Query: 187 LTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFSAGPRSCVGR 246
I A V+ +R P+PDV + + + A V F G CVG
Sbjct: 309 QLIKAGDYVLCSILMANRDEALTPDPDVLDAN-----RAAVSD----VGFGHGIHYCVGA 359
Query: 247 KYAMLKLKVILSTILRNF 264
A L++ T+ R F
Sbjct: 360 ALARSMLRMAYQTLWRRF 377
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 1e-08
Identities = 55/345 (15%), Positives = 106/345 (30%), Gaps = 76/345 (22%)
Query: 4 SIPIPTIGIKEEKKAEEKVKDKTVVEGLSYGQSSGLKDDLDVDEDVGEKKRLAFLDL--- 60
+I + I+ E + +K K L L + +V K +L
Sbjct: 222 NIKLRIHSIQAELR--RLLKSKPYENCL-----------LVLL-NVQNAKAWNAFNLSCK 267
Query: 61 -LIESAQNGVVLTDEEIKEQVDTIMFEGHD---TTAAGSSFFLCVMGTHPE---IQAKVI 113
L+ + V TD I + H T S L + P+ +
Sbjct: 268 ILLTTRFKQV--TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT 325
Query: 114 --QEIDEIFGDS--DRPCTFQDTLEMKY------MERCI-----------METLRMFP-- 150
+ + I +S D T+ + + +E + + L +FP
Sbjct: 326 NPRRLS-IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS 384
Query: 151 -PVP----------VIARELQQEV-KLNSCDLTIPANCTQEVKLNSCDLTIPANCTVVIG 198
+P VI ++ V KL+ L + + S L +
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLE---N 441
Query: 199 TYKIHRQ-PDTYPNPDVYNPDNFLPEKCANRHYYSFVPF-----SAGPRSCVGRK----Y 248
Y +HR D Y P ++ D+ +P ++++YS + R + R +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPP-YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF 500
Query: 249 AMLKLKVILSTILRNFTVHSPTKLEDWKLQGDIILKRTDGFKVKL 293
L+ K+ + N + L+ K I ++ +
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545
>3a4g_A Vitamin D hydroxylase; cytochrome P450, hemoprotein, monoox
oxidoreductase; HET: HEM; 1.75A {Pseudonocardia
autotrophica} PDB: 3a4h_A* 3a51_A* 3a4z_A* 3a50_A*
Length = 411
Score = 54.2 bits (131), Expect = 2e-08
Identities = 45/213 (21%), Positives = 71/213 (33%), Gaps = 60/213 (28%)
Query: 59 DLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTA---AGSSFFLCVMGTHPEIQAKVIQE 115
LL S ++G L+ EE+ ++ GH+TT L THP+ + +
Sbjct: 209 SLLAVSDEDGDRLSQEELVAMAMLLLIAGHETTVNLIGNGVLALL---THPDQRKLLA-- 263
Query: 116 IDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPV----IARELQQEVKLNSCDLT 171
+ P +E E LR PV E D+T
Sbjct: 264 --------EDPSLISSAVE---------EFLRFDSPVSQAPIRFTAE----------DVT 296
Query: 172 IPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYY 231
+TIPA V++G +R D P PD + A+
Sbjct: 297 Y------------SGVTIPAGEMVMLGLAAANRDADWMPEPDR-----LDITRDASGG-- 337
Query: 232 SFVPFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
V F G C+G + A L+ +V + + +
Sbjct: 338 --VFFGHGIHFCLGAQLARLEGRVAIGRLFADR 368
>3tyw_A Putative cytochrome P450; P450 monooxygenase, oxidoreductase; HET:
HEM; 2.90A {Streptomyces coelicolor}
Length = 417
Score = 54.2 bits (131), Expect = 2e-08
Identities = 39/211 (18%), Positives = 73/211 (34%), Gaps = 54/211 (25%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEID 117
+ L+ +T E++ + + G +TT + + ++ PE +++
Sbjct: 221 ISKLVTDHLVPGNVTTEQLLSTLGITINAGRETTTSMIALSTLLLLDRPE-LPAELRK-- 277
Query: 118 EIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPV----IARELQQEVKLNSCDLTIP 173
D D M + E LR+ +A E D+ +
Sbjct: 278 ----DPDL------------MPAAVDELLRVLSVADSIPLRVAAE----------DIEL- 310
Query: 174 ANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSF 233
T+PA+ V+ + P+ + +P+ + + N H
Sbjct: 311 -----------SGRTVPADDGVIALLAGANHDPEQFDDPERVDFH-----RTDNHH---- 350
Query: 234 VPFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
V F G CVG+ A L+L+V L T+LR
Sbjct: 351 VAFGYGVHQCVGQHLARLELEVALETLLRRV 381
>2xbk_A PIMD protein; epoxidation, oxidoreductase; HET: HEM XBK; 1.95A
{Streptomyces natalensis} PDB: 2x9p_A*
Length = 404
Score = 53.8 bits (130), Expect = 2e-08
Identities = 34/211 (16%), Positives = 66/211 (31%), Gaps = 57/211 (27%)
Query: 59 DLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDE 118
D++ S N LT++ + ++F G D+ A+ + ++ HP+ +A +
Sbjct: 216 DII--SRLNDGELTEDRVAHLAMGLLFAGLDSVASIMDNGVVLLAAHPDQRAAAL----- 268
Query: 119 IFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPV-----IARELQQEVKLNSCDLTIP 173
P +E E LR A E D+
Sbjct: 269 -----ADPDVMARAVE---------EVLRTARAGGSVLPPRYASE----------DMEF- 303
Query: 174 ANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSF 233
+TI A V+ + + P+ ++ + N H
Sbjct: 304 -----------GGVTIRAGDLVLFDLGLPNFDERAFTGPEEFDAA-----RTPNPH---- 343
Query: 234 VPFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
+ F G C+G A L+L+ + + +
Sbjct: 344 LTFGHGIWHCIGAPLARLELRTMFTKLFTRL 374
>1cpt_A Cytochrome P450-TERP; oxidoreductase(oxygenase); HET: HEM; 2.30A
{Pseudomonas SP} SCOP: a.104.1.1
Length = 428
Score = 53.9 bits (130), Expect = 2e-08
Identities = 48/246 (19%), Positives = 84/246 (34%), Gaps = 64/246 (26%)
Query: 59 DL---LIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQE 115
D+ L S +G + D+ I I GHDTT++ S + + +PE A
Sbjct: 237 DVMSLLANSKLDGNYIDDKYINAYYVAIATAGHDTTSSSSGGAIIGLSRNPEQLALAKS- 295
Query: 116 IDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPAN 175
D + R + E +R PV R + ++
Sbjct: 296 ------DPAL------------IPRLVDEAVRWTAPVKSFMRTALADTEVR--------- 328
Query: 176 CTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVP 235
I +++ +R + + NPD ++ + NRH +
Sbjct: 329 ----------GQNIKRGDRIMLSYPSANRDEEVFSNPDEFDIT-----RFPNRH----LG 369
Query: 236 FSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDIILKRTD---GFK-- 290
F G C+G+ A L++K+ +L KL+ +L G L T+ G K
Sbjct: 370 FGWGAHMCLGQHLAKLEMKIFFEELLP--------KLKSVELSGPPRLVATNFVGGPKNV 421
Query: 291 -VKLTP 295
++ T
Sbjct: 422 PIRFTK 427
>3buj_A CALO2; heme, iron, metal-binding, monooxygenase, oxidoreducta
binding protein; HET: HEM; 2.47A {Micromonospora
echinospora}
Length = 397
Score = 53.8 bits (130), Expect = 2e-08
Identities = 45/208 (21%), Positives = 75/208 (36%), Gaps = 54/208 (25%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTA---AGSSFFLCVMGTHPEIQAKVIQ 114
L L+++ A + +++ EI V T +F GH+T A + L HP+ +
Sbjct: 206 LALMLD-AHDRGLMSRNEIVSTVVTFIFTGHETVASQVGNAVLSLL---AHPDQLDLLR- 260
Query: 115 EIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPA 174
RP L + + + E LR P V R+L +V+L
Sbjct: 261 ---------RRP-----DL----LAQAVEECLRYDPSVQSNTRQLDVDVELR-------- 294
Query: 175 NCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFV 234
+ + VV+ +R P Y PD F E+ +
Sbjct: 295 -----------GRRLRRDDVVVVLAGAANRDPRRYDRPDD-----FDIERDPVPS----M 334
Query: 235 PFSAGPRSCVGRKYAMLKLKVILSTILR 262
F AG R C+G A +L+ ++ + R
Sbjct: 335 SFGAGMRYCLGSYLARTQLRAAVAALAR 362
>1q5d_A P450 epoxidase; cytochrome P450, epothilone, oxydoreductase,
heme-enzyme, oxidoreductase; HET: HEM EPB; 1.93A
{Sorangium cellulosum} SCOP: a.104.1.1 PDB: 1q5e_A*
1pkf_A*
Length = 419
Score = 53.4 bits (129), Expect = 3e-08
Identities = 39/211 (18%), Positives = 72/211 (34%), Gaps = 54/211 (25%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEID 117
L +L+++ +G L+ +E+ V I+ G DTT +F + + PE ++
Sbjct: 226 LTMLLQAEADGSRLSTKELVALVGAIIAAGTDTTIYLIAFAVLNLLRSPE-------ALE 278
Query: 118 EIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPV----IARELQQEVKLNSCDLTIP 173
+ + M + E LR + + AR+ DL
Sbjct: 279 LVKAEPGL------------MRNALDEVLRFDNILRIGTVRFARQ----------DLEY- 315
Query: 174 ANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSF 233
C +I V + R + PDV++ + +
Sbjct: 316 -----------CGASIKKGEMVFLLIPSALRDGTVFSRPDVFDVR-----RDTSAS---- 355
Query: 234 VPFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
+ + GP C G A L+ ++ + TI R F
Sbjct: 356 LAYGRGPHVCPGVSLARLEAEIAVGTIFRRF 386
>1n40_A P450 MT2, cytochrome P450 121; heme binding, oxygen binding, P450
fold, structural genomics, PSI, protein structure
initiative; HET: HEM; 1.06A {Mycobacterium tuberculosis}
SCOP: a.104.1.1 PDB: 1n4g_A* 2ij5_A* 2ij7_A* 3g5f_A*
3g5h_A* 3cy0_A* 3cy1_A* 3cxv_A* 3cxx_A* 3cxz_A* 3cxy_A*
Length = 396
Score = 53.4 bits (129), Expect = 3e-08
Identities = 29/222 (13%), Positives = 61/222 (27%), Gaps = 57/222 (25%)
Query: 51 EKKRLA--FLDLLI--ESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHP 106
E + + L ++DE T G +T + + L + P
Sbjct: 194 ENPNITTGLMGELSRLRKDPAYSHVSDELFATIGVTFFGAGVISTGSFLTTALISLIQRP 253
Query: 107 EIQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPV----IARELQQE 162
+++ + ++P +E E LR+ +A
Sbjct: 254 QLRNLLH----------EKPELIPAGVE---------ELLRINLSFADGLPRLATA---- 290
Query: 163 VKLNSCDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLP 222
D+ + D+ + V++ + P+ +PNP D
Sbjct: 291 ------DIQV------------GDVLVRKGELVLVLLEGANFDPEHFPNPGSIELD---- 328
Query: 223 EKCANRHYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
H + F G C G ++ + +L+
Sbjct: 329 RPNPTSH----LAFGRGQHFCPGSALGRRHAQIGIEALLKKM 366
>1odo_A Putative cytochrome P450 154A1; P450 monooxygenase, oxidoreductase;
HET: HEM PIM; 1.85A {Streptomyces coelicolor} SCOP:
a.104.1.1
Length = 408
Score = 53.0 bits (128), Expect = 4e-08
Identities = 39/209 (18%), Positives = 70/209 (33%), Gaps = 59/209 (28%)
Query: 63 ESAQNGVVLTDEEIKEQVDTIMFEGHDTTA---AGSSFFLCVMGTHPEIQAKVIQEIDEI 119
+ +G L+ EE+++ + ++ G++TT + L T P+ A V
Sbjct: 219 DDEGDGDRLSPEELRDTLLLMISAGYETTVNVIDQAVHTLL---TRPDQLALVR------ 269
Query: 120 FGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPV----IARELQQEVKLNSCDLTIPAN 175
T+ D +E ETLR P V A D+ +P
Sbjct: 270 ----KGEVTWADVVE---------ETLRHEPAVKHLPLRYAVT----------DIALPDG 306
Query: 176 CTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVP 235
T I ++ +R PD + + D F + H +
Sbjct: 307 RT-----------IARGEPILASYAAANRHPDWHEDADT-----FDATRTVKEH----LA 346
Query: 236 FSAGPRSCVGRKYAMLKLKVILSTILRNF 264
F G C+G A +++ + L ++ F
Sbjct: 347 FGHGVHFCLGAPLARMEVTLALESLFGRF 375
>3ivy_A Cytochrome P450 CYP125; cholesterol, monooxygenase, H iron,
metal-binding, oxidoreductase; HET: HEM; 1.35A
{Mycobacterium tuberculosis} PDB: 3iw0_A* 3iw1_A*
3iw2_A* 2x5w_A* 2x5l_A* 2xc3_A* 2xn8_A*
Length = 433
Score = 52.3 bits (126), Expect = 7e-08
Identities = 44/250 (17%), Positives = 77/250 (30%), Gaps = 67/250 (26%)
Query: 59 DL---LIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQE 115
D+ LI++ +G L+D+E V + G++TT + + HP+
Sbjct: 238 DIVTQLIQADIDGEKLSDDEFGFFVVMLAVAGNETTRNSITQGMMAFAEHPDQWELY--- 294
Query: 116 IDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPAN 175
RP T E +R PV R ++ +L+
Sbjct: 295 ------KKVRPETA------------ADEIVRWATPVTAFQRTALRDYELS--------- 327
Query: 176 CTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVP 235
+ I VV+ + + + +P +N + N H V
Sbjct: 328 ----------GVQIKKGQRVVMFYRSANFDEEVFQDPFTFNIL-----RNPNPH----VG 368
Query: 236 FSA-GPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDIILKRTD---GFK- 290
F G C+G A + + +I + + + D K R+ G K
Sbjct: 369 FGGTGAHYCIGANLARMTINLIFNAVAD--------HMPDLKPISAPERLRSGWLNGIKH 420
Query: 291 --VKLTPRKK 298
V T R
Sbjct: 421 WQVDYTGRCP 430
>1z8o_A 6-deoxyerythronolide B hydroxylase; heme, CYP, erythromycin,
oxidoreductase; HET: HEM DEB; 1.70A {Saccharopolyspora
erythraea} SCOP: a.104.1.1 PDB: 1z8p_A* 1z8q_A* 1jio_A*
1jip_A* 1eup_A* 1egy_A* 1jin_A* 1oxa_A*
Length = 404
Score = 52.2 bits (126), Expect = 8e-08
Identities = 39/212 (18%), Positives = 67/212 (31%), Gaps = 59/212 (27%)
Query: 59 DLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTA---AGSSFFLCVMGTHPEIQAKVIQE 115
L+ + L+ +E+ ++ G + + ++ L THP+ A V
Sbjct: 214 ALIRVQDDDDGRLSADELTSIALVLLLAGFEASVSLIGIGTYLLL---THPDQLALVR-- 268
Query: 116 IDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIAR---ELQQEVKLNSCDLTI 172
P + +E E LR P R E ++ I
Sbjct: 269 --------RDPSALPNAVE---------EILRYIAPPETTTRFAAE----------EVEI 301
Query: 173 PANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYS 232
+ IP TV++ +R P +P+P F + H
Sbjct: 302 ------------GGVAIPQYSTVLVANGAANRDPKQFPDPHR-----FDVTRDTRGH--- 341
Query: 233 FVPFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
+ F G C+GR A L+ +V L + F
Sbjct: 342 -LSFGQGIHFCMGRPLAKLEGEVALRALFGRF 372
>1gwi_A CYP154C1, cytochrome P450 154C1; oxidoreductase, macrolide
antibiotics, 12- and 14- carbon macrolactone
monooxygenase, heme; HET: HEM; 1.92A {Streptomyces
coelicolor} SCOP: a.104.1.1
Length = 411
Score = 51.8 bits (125), Expect = 1e-07
Identities = 47/215 (21%), Positives = 74/215 (34%), Gaps = 60/215 (27%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTA---AGSSFFLCVMGTHPEIQAKVIQ 114
LI++++NG LTD EI + ++ GH+TT + L THPE +A V+
Sbjct: 214 TSALIQASENGDHLTDAEIVSTLQLMVAAGHETTISLIVNAVVNLS---THPEQRALVL- 269
Query: 115 EIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPV----IARELQQEVKLNSCDL 170
+ +E ETLR P A E D+
Sbjct: 270 ---------SGEAEWSAVVE---------ETLRFSTPTSHVLIRFAAE----------DV 301
Query: 171 TIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTY-PNPDVYNPDNFLPEKCANRH 229
+ D IPA +++ + R + P D ++ NRH
Sbjct: 302 PV------------GDRVIPAGDALIVSYGALGRDERAHGPTADRFDLT----RTSGNRH 345
Query: 230 YYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
+ F GP C G + ++ V L + F
Sbjct: 346 ----ISFGHGPHVCPGAALSRMEAGVALPALYARF 376
>2dkk_A Cytochrome P450; CYP158A1, INHI oxidoreductase; HET: HEM; 1.97A
{Streptomyces coelicolor} PDB: 2nz5_A* 2nza_A*
Length = 411
Score = 51.5 bits (124), Expect = 1e-07
Identities = 32/212 (15%), Positives = 59/212 (27%), Gaps = 57/212 (26%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEID 117
+L + G + + E + G T ++ T E ++E
Sbjct: 218 YSMLGAAVGRGE-VGETEAVGLAGPLQIGGEAVTHNVGQMLYLLL-TRRE-LMARMRE-- 272
Query: 118 EIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPV-----IARELQQEVKLNSCDLTI 172
+ E LR IA E D+ +
Sbjct: 273 ----RPGA------------RGTALDELLRWISHRTSVGLARIALE----------DVEV 306
Query: 173 PANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYS 232
I A V + +R PD +P+PD ++ N H
Sbjct: 307 ------------HGTRIAAGEPVYVSYLAANRDPDVFPDPDR-----IDLDRDPNPH--- 346
Query: 233 FVPFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
+ + G C G A ++ ++++ T+L
Sbjct: 347 -LAYGNGHHFCTGAVLARMQTELLVDTLLERL 377
>1s1f_A Putative cytochrome P450; cytochrome P450 oxidoreductase, CYP158A2,
anti biosynthesis, oxidoreductase; HET: HEM PIM; 1.50A
{Streptomyces coelicolor} SCOP: a.104.1.1 PDB: 1se6_A*
2d0e_A* 1t93_A* 2d09_A* 3tzo_A*
Length = 406
Score = 51.1 bits (123), Expect = 2e-07
Identities = 41/213 (19%), Positives = 68/213 (31%), Gaps = 58/213 (27%)
Query: 59 DLL--IESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEI 116
D+ + +A +T E + G T F ++ + PE A+ ++
Sbjct: 213 DVTSLLGAAVGRDEITLSEAVGLAVLLQIGGEAVTNNSGQMFHLLL-SRPE-LAERLRS- 269
Query: 117 DEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPV-----IARELQQEVKLNSCDLT 171
+ + R I E LR P IA E D+
Sbjct: 270 -----EPEI------------RPRAIDELLRWIPHRNAVGLSRIALE----------DVE 302
Query: 172 IPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYY 231
I + I A V + +R P+ +P+PD E+ N H
Sbjct: 303 I------------KGVRIRAGDAVYVSYLAANRDPEVFPDPDR-----IDFERSPNPH-- 343
Query: 232 SFVPFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
V F GP C G A L+ ++++ +L
Sbjct: 344 --VSFGFGPHYCPGGMLARLESELLVDAVLDRV 374
>3tkt_A Cytochrome P450; aromatic hydrocarbon binding of P450 E
oxidoreductase; HET: HEM; 2.20A {Novosphingobium
aromaticivorans}
Length = 450
Score = 50.8 bits (122), Expect = 2e-07
Identities = 40/209 (19%), Positives = 74/209 (35%), Gaps = 50/209 (23%)
Query: 59 DL---LIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQE 115
D+ + + +G ++D + GHDTT+A S+ + P++ A+V
Sbjct: 259 DVATVIANAVVDGEPMSDRDTAGYYIITASAGHDTTSASSAGAALALARDPDLFARVKA- 317
Query: 116 IDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPAN 175
D + + + E +R PV R + +L
Sbjct: 318 ------DRNL------------LPGIVEEAIRWTTPVQHFMRTAATDTELC--------- 350
Query: 176 CTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVP 235
I A +++ + P +P P ++P + ANRH +
Sbjct: 351 ----------GQKIAAGDWLMLNYVAANHDPAQFPEPRKFDPT-----RPANRH----LA 391
Query: 236 FSAGPRSCVGRKYAMLKLKVILSTILRNF 264
F AG C+G A L+++V+L +L
Sbjct: 392 FGAGSHQCLGLHLARLEMRVLLDVLLDRV 420
>3rwl_A Cytochrome P450 alkane hydroxylase 1 CYP153A7; P450 monooxygenase,
oxidoreductase; HET: HEM; 2.00A {Sphingopyxis
macrogoltabida}
Length = 426
Score = 50.7 bits (122), Expect = 2e-07
Identities = 40/208 (19%), Positives = 75/208 (36%), Gaps = 48/208 (23%)
Query: 59 DLL--IESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEI 116
DL+ + + +T EE V ++ G+DTT + + + +P+ AK+
Sbjct: 236 DLISMLAHSPATRNMTPEEYLGNVLLLIVGGNDTTRNSMTGGVLALHKNPDQFAKLK--- 292
Query: 117 DEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANC 176
++ +E + E +R P+ + R T
Sbjct: 293 ------ANPA----------LVETMVPEIIRWQTPLAHMRR-------------T----A 319
Query: 177 TQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPF 236
+ +L TI VV+ Y +R + P+ + D P +H + F
Sbjct: 320 IADSELG--GKTIRKGDKVVMWYYSGNRDDEVIDRPEEFIIDRPRP----RQH----LSF 369
Query: 237 SAGPRSCVGRKYAMLKLKVILSTILRNF 264
G CVG + A ++L+++ IL F
Sbjct: 370 GFGIHRCVGNRLAEMQLRILWEEILTRF 397
>3oo3_A OXY protein; cytochrome P450, monooxygenase, PCD-teicoplanin
aglycone, oxidoreductase; HET: HEM; 2.20A {Actinoplanes
teichomyceticus} PDB: 3o1a_A*
Length = 384
Score = 48.0 bits (115), Expect = 1e-06
Identities = 35/211 (16%), Positives = 67/211 (31%), Gaps = 61/211 (28%)
Query: 58 LDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEID 117
+ +++ ++G ++DEE+ + + + AA + + ++ THP+ A +
Sbjct: 200 IGVIV--REHGAEISDEELAGLAEGNLIMAAEQMAAQLAVAVLLLVTHPDQMALLR---- 253
Query: 118 EIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPV----IARELQQEVKLNSCDLTIP 173
++P E E LR V +A D+ +
Sbjct: 254 ------EKPELIDSATE---------EVLRHASIVEAPAPRVALA----------DVRM- 287
Query: 174 ANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSF 233
I A + +R P D F + H
Sbjct: 288 -----------AGRDIHAGDVLTCSMLATNRAP----------GDRFDITREKATH---- 322
Query: 234 VPFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
+ F G C+G A L+L+V L ++ F
Sbjct: 323 MAFGHGIHHCIGAPLARLQLRVALPAVVGRF 353
>3b4x_A 367AA long hypothetical cytochrome P450; HEM protein, heme, iron,
metal-binding, monooxygenase, oxidoreductase; HET: HEM;
1.94A {Sulfolobus tokodaii} PDB: 1ue8_A*
Length = 367
Score = 46.8 bits (112), Expect = 4e-06
Identities = 35/206 (16%), Positives = 62/206 (30%), Gaps = 52/206 (25%)
Query: 59 DLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDE 118
DL L++ E + +M G++TT + +
Sbjct: 185 DLT--GKIANSNLSELEKEGYFILLMIAGNETTTNLIGNAIEDFTLYNSWDYVR------ 236
Query: 119 IFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQ 178
+ E LR PPV R +++VK+
Sbjct: 237 ----EKGALKA------------VEEALRFSPPVMRTIRVTKEKVKIR------------ 268
Query: 179 EVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFSA 238
D I V + +R + + +PD + PD + N H + F +
Sbjct: 269 -------DQVIDEGELVRVWIASANRDEEVFKDPDSFIPD-----RTPNPH----LSFGS 312
Query: 239 GPRSCVGRKYAMLKLKVILSTILRNF 264
G C+G A L+ ++ L + F
Sbjct: 313 GIHLCLGAPLARLEARIALEEFAKKF 338
>2yjn_B Erycii, DTDP-4-keto-6-deoxy-hexose 3,4-isomerase; transferase,
cytochrome P450; 3.09A {Saccharopolyspora erythraea}
Length = 381
Score = 46.2 bits (110), Expect = 6e-06
Identities = 24/178 (13%), Positives = 45/178 (25%), Gaps = 47/178 (26%)
Query: 87 GHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETL 146
G + TA + + P A+ I + D +R + E L
Sbjct: 223 GAEMTANTVVDAVLAVSAEPG-LAERIAD------DPAA------------AQRTVAEVL 263
Query: 147 RMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQP 206
R+ P + + R EV+L + I VV+ +R P
Sbjct: 264 RLHPALHLERRTATAEVRL-------------------GEHVIGEGEEVVVVVAAANRDP 304
Query: 207 DTYPNPDVYNPDNFLPEKCANRHYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
+ + PD ++ + + L +
Sbjct: 305 EVFAEPDR-----LDVDRPDADR----ALSAHRGHPGRLEELVTALATAALRAAAKAL 353
>1io7_A Cytochrome P450 CYP119; thermophilic, cytochromo P450, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: HEM; 1.50A {Sulfolobus
solfataricus} SCOP: a.104.1.1 PDB: 1f4u_A* 1f4t_A*
1io9_A* 1io8_A*
Length = 368
Score = 44.9 bits (107), Expect = 2e-05
Identities = 37/194 (19%), Positives = 69/194 (35%), Gaps = 49/194 (25%)
Query: 71 LTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSDRPCTFQ 130
L+D E + ++ G++TT S + ++ +
Sbjct: 194 LSDIEKLGYIILLLIAGNETTTNLISNSVIDFTRFNL-WQRI----------------RE 236
Query: 131 DTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKLNSCDLTIP 190
+ L + I E LR PPV R+ ++ VKL D TI + V++
Sbjct: 237 ENL----YLKAIEEALRYSPPVMRTVRKTKERVKLG--DQTIEEG--EYVRV----WIAS 284
Query: 191 ANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFSAGPRSCVGRKYAM 250
AN R + + + + + PD + N H + F +G C+G A
Sbjct: 285 AN-----------RDEEVFHDGEKFIPD-----RNPNPH----LSFGSGIHLCLGAPLAR 324
Query: 251 LKLKVILSTILRNF 264
L+ ++ + + F
Sbjct: 325 LEARIAIEEFSKRF 338
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.092
Identities = 30/204 (14%), Positives = 52/204 (25%), Gaps = 83/204 (40%)
Query: 50 GEKKRLAFLDLLIESAQNGVVLTD---EEIKEQVDTIMFEG-----HDT-------TAAG 94
G++ R + ++ E+ +G + T+ +EI E + F T T
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLME 1740
Query: 95 SSFF--L----------CVMGTHP--EI-----QAKVIQEIDEIFGDSDRPCTFQDTLEM 135
+ F L G H E A V+ + + +E+
Sbjct: 1741 KAAFEDLKSKGLIPADATFAG-HSLGEYAALASLADVM--------------SIESLVEV 1785
Query: 136 -----KYMERCI------METLRMFPPVPV-IARELQQEVKLNSCD---------LTIPA 174
M+ + M P +A QE + + I
Sbjct: 1786 VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEI-V 1844
Query: 175 NCTQEVKLNSCDLTIPANCTVVIG 198
N N N V
Sbjct: 1845 N------YNV------ENQQYVAA 1856
Score = 33.1 bits (75), Expect = 0.13
Identities = 29/189 (15%), Positives = 57/189 (30%), Gaps = 62/189 (32%)
Query: 27 VVEGLSYGQSSGLKDDLD-VDEDVGEKKRLAFLDLLIESAQNGVVLTDEEIKEQVDTIMF 85
+ L+ Q ++D ++ + + K++ L+ A+N VV
Sbjct: 340 SISNLTQEQ---VQDYVNKTNSHLPAGKQVEIS--LVNGAKNLVV--------------- 379
Query: 86 EGHDTTAAGSSFFLCVMGTHPE-IQAKVIQEIDEI-FGDSDRPCTFQDT-LEM------K 136
+G L + +A + I F S+R F + L +
Sbjct: 380 -------SGPPQSLYGLNLTLRKAKAPSGLDQSRIPF--SERKLKFSNRFLPVASPFHSH 430
Query: 137 YMERCIMETLRMFPPVPVIARELQ-QEVKLNSCDLTIPANCT----------QEVKLNSC 185
+ P +I ++L V N+ D+ IP T +
Sbjct: 431 LLV----------PASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIV 480
Query: 186 D--LTIPAN 192
D + +P
Sbjct: 481 DCIIRLPVK 489
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 32.1 bits (74), Expect = 0.23
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 10/44 (22%)
Query: 132 TLEMKYMERCIMETLRM--------FPPVPVIARELQ--QEVKL 165
TLE++Y + I + L + F I R L +EV L
Sbjct: 676 TLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREVGL 719
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 31.7 bits (73), Expect = 0.32
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
Query: 131 DTLEMKYMERCIMETLRM--------FPPVPVIARELQ 160
+TLE+ Y + I E L M F +P I R+L+
Sbjct: 488 ETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLE 525
>3p0y_A Epidermal growth factor receptor; beta-sandwich, antigens EGFR,
immune system; HET: NAG FUL; 1.80A {Homo sapiens} PDB:
3b2u_A* 3c09_A*
Length = 214
Score = 30.6 bits (68), Expect = 0.49
Identities = 8/53 (15%), Positives = 17/53 (32%)
Query: 168 CDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNF 220
C+ + +N+ ++ NCT + G I + P +
Sbjct: 4 CNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDP 56
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 31.3 bits (72), Expect = 0.49
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 10/46 (21%)
Query: 130 QDTLEMKYMERCIMETLRM--------FPPVPVIARELQ--QEVKL 165
++TLE+ Y + I + L M F +P I R LQ +V L
Sbjct: 749 RETLEITYKGKNISDILDMTVDEALEFFKNIPSIKRTLQVLHDVGL 794
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.56
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 4/26 (15%)
Query: 157 RELQQEVKLNSCDLTIPA---NCTQE 179
++LQ +KL + D + PA T E
Sbjct: 23 KKLQASLKLYADD-SAPALAIKATME 47
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 30.6 bits (70), Expect = 0.80
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 8/39 (20%)
Query: 130 QDTLEMKYMERCIMETLRM--------FPPVPVIARELQ 160
++TLE+ Y + I E L M F +P I R+L+
Sbjct: 789 RETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLE 827
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 30.6 bits (70), Expect = 0.82
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 10/46 (21%)
Query: 130 QDTLEMKYMERCIMETLRM--------FPPVPVIARELQ--QEVKL 165
++TLE+ Y + + E L M F P+ + R L+ +V L
Sbjct: 807 RETLEVHYKGKTVSEVLDMSIEEAAEFFEPIAGVHRYLRTLVDVGL 852
>1sct_A Hemoglobin II (carbonmonoxy) (alpha chain); oxygen transport; HET:
HEM; 2.00A {Scapharca inaequivalvis} SCOP: a.1.1.2
Length = 150
Score = 28.7 bits (64), Expect = 1.3
Identities = 6/50 (12%), Positives = 15/50 (30%)
Query: 62 IESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAK 111
+++A V ++ + D A G + P+ +
Sbjct: 2 VDAAVAKVCGSEAIKANLRRSWGVLSADIEATGLMLMSNLFTLRPDTKTY 51
>3rfw_A Cell-binding factor 2; SURA-like, chaperone; 2.20A {Campylobacter
jejuni}
Length = 252
Score = 29.0 bits (65), Expect = 1.7
Identities = 7/80 (8%), Positives = 27/80 (33%), Gaps = 2/80 (2%)
Query: 1 MLNSIPIPTIGIKEEKKAEEKVKDKTVVEGL--SYGQSSGLKDDLDVDEDVGEKKRLAFL 58
+ ++ + + +++ L + L+ D +++ K +
Sbjct: 19 FFAPMLRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDPLYTKELDRAKDAILV 78
Query: 59 DLLIESAQNGVVLTDEEIKE 78
++ E N + + ++K
Sbjct: 79 NVYQEKILNTIKIDAAKVKA 98
>1yhu_B Giant hemoglobins B chain; globin fold, oxygen storage-transport
complex; HET: HEM; 3.15A {Riftia pachyptila}
Length = 144
Score = 27.6 bits (61), Expect = 2.7
Identities = 7/44 (15%), Positives = 12/44 (27%), Gaps = 3/44 (6%)
Query: 70 VLTDEE---IKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQA 110
V + +K Q G+ G + V P +
Sbjct: 3 VCGPLQRLKVKRQWAEAYGSGNSREEFGHFIWSHVFQHSPAARD 46
>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex
enzyme, substrate channeling, amidotransferase,
flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A
{Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB:
1llz_A* 1lm1_A* 1llw_A* 1ofe_A*
Length = 1520
Score = 28.7 bits (65), Expect = 2.8
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 11/44 (25%)
Query: 43 LDVD-EDVGEKKRLA----FL-DLLIESAQNGVVLTDEEIKEQV 80
+D+ D+ EK RLA DL +L + +IK+Q
Sbjct: 371 VDLPEVDIVEKGRLAPGQMIAVDL-----AEQKILKNYQIKQQA 409
>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron
sulphur flavoprotein; HET: OMT FMN AKG; 3.0A
{Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1
d.153.1.1 PDB: 2vdc_A*
Length = 1479
Score = 28.6 bits (65), Expect = 3.0
Identities = 13/44 (29%), Positives = 20/44 (45%), Gaps = 11/44 (25%)
Query: 43 LDVD-EDVGEKKRLA----FL-DLLIESAQNGVVLTDEEIKEQV 80
+ +D V EK RL DL Q+G + D E+K+ +
Sbjct: 372 VKIDETQVIEKGRLGPGEMIAVDL-----QSGKLYRDRELKDHL 410
>3ue6_A Aureochrome1; PAS/LOV domain, FMN-binding blue-light
photoreceptor, signal protein; HET: FMN; 2.75A
{Vaucheria frigida} PDB: 3ulf_A*
Length = 166
Score = 27.7 bits (62), Expect = 3.6
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 34 GQSSGLKDDLDVDEDVGEKK----RLAFLDLLIESAQNGVVLTD 73
Q S D L D + L ++ AQ V+TD
Sbjct: 9 AQCSPEADTLLTDNPSKANRILEDPDYSLVKALQMAQQNFVITD 52
>3ive_A Nucleotidase; structural genomics, PSI-2, protein structure
initiative, NEW YORK SGX research center for structural
genomics, nysgxrc; HET: CTN; 1.70A {Escherichia coli O6}
PDB: 3ivd_A*
Length = 509
Score = 28.1 bits (63), Expect = 4.0
Identities = 13/71 (18%), Positives = 26/71 (36%), Gaps = 9/71 (12%)
Query: 55 LAFLDLLIESAQNGVVLTDEEIKEQVDTIMF---EGHDTTAAGSSFFLCVMGTHPEIQ-A 110
+ D I+ Q + +E+K +VD + EG + +IQ A
Sbjct: 166 IEARDE-IKWLQRYI----DELKGKVDLTVALIHEGVPARQSSMGGTDVRRALDKDIQTA 220
Query: 111 KVIQEIDEIFG 121
++ +D +
Sbjct: 221 SQVKGLDILIT 231
>3ntl_A Acid glucose-1-phosphate phosphatase; histidine acid phosphatase,
phytate binding site, hydrolase; HET: IHP; 1.88A
{Enterobacter cloacae} PDB: 1nt4_A*
Length = 398
Score = 27.5 bits (60), Expect = 5.8
Identities = 14/112 (12%), Positives = 28/112 (25%)
Query: 83 IMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCI 142
+ GHD+ A L Q + +I L
Sbjct: 282 TLLVGHDSNIASLLTALDFKPYQLHDQQERTPIGGKIVFQRWHDKNANQELMKIEYVYQS 341
Query: 143 METLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKLNSCDLTIPANCT 194
E LR + + + + ++L C + C + + +
Sbjct: 342 SEQLRNASVLSLQSPAQRVTLELKGCPVDANGFCPVDKFNAVMNNAAKRSGH 393
>3sw1_A Sensory box protein; light-oxygen-voltage, LOV, PAS, signaling
protein; HET: FMN; 2.63A {Pseudomonas putida}
Length = 162
Score = 26.8 bits (60), Expect = 7.1
Identities = 3/30 (10%), Positives = 13/30 (43%)
Query: 44 DVDEDVGEKKRLAFLDLLIESAQNGVVLTD 73
+ L +++++ +G+V+ +
Sbjct: 13 GLVPRGSHMINAQLLQSMVDASNDGIVVAE 42
>4dqy_C Poly [ADP-ribose] polymerase 1; PARP, poly(ADP-ribose)
polymerase, DNA binding protein, ADP- transferase,
PARP-like zinc finger, poly(ADP-ribosyl)ation; HET:
DNA; 3.25A {Homo sapiens} PDB: 2cr9_A
Length = 506
Score = 27.2 bits (59), Expect = 7.4
Identities = 13/56 (23%), Positives = 21/56 (37%), Gaps = 5/56 (8%)
Query: 12 IKEEKKAEEKVKDKTVVEGLSYGQSSGLKDDLDVDEDVGEKKRLAFLDLLIESAQN 67
+K EK+ + +K V+ SGL+ V E G+ + I N
Sbjct: 1 MKSEKRMKLTLKGGAAVD-----PDSGLEHSAHVLEKGGKVFSATLGLVDIVKGTN 51
>3p7n_A Sensor histidine kinase; LOV domain, light-activated
transcription factor, DNA bindin; HET: FMN; 2.10A
{Erythrobacter litoralis}
Length = 258
Score = 26.9 bits (59), Expect = 7.7
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 44 DVDEDVGEKKRLAFLDLLIESAQNGVVLTD 73
D V + ++ LIE++ V++D
Sbjct: 51 ADDTRVEVQPPAQWVLDLIEASPIASVVSD 80
>1x3k_A Hemoglobin component V; diptera, midge larva, oxygen
storage/transport complex; HET: HEM; 1.64A
{Tokunagayusurika akamusi} PDB: 2zwj_A* 3a5a_A* 3a5b_A*
3a5g_A* 3a9m_A* 3arj_A* 3ark_A* 3arl_A*
Length = 152
Score = 26.5 bits (58), Expect = 7.9
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 71 LTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAK 111
L+D E K D D ++ F + +P Q K
Sbjct: 5 LSDSEEKLVRDAWAPIHGDLQGTANTVFYNYLKKYPSNQDK 45
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.136 0.401
Gapped
Lambda K H
0.267 0.0762 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,690,473
Number of extensions: 285130
Number of successful extensions: 962
Number of sequences better than 10.0: 1
Number of HSP's gapped: 791
Number of HSP's successfully gapped: 119
Length of query: 302
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 209
Effective length of database: 4,105,140
Effective search space: 857974260
Effective search space used: 857974260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.7 bits)