RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4939
(302 letters)
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 155 bits (392), Expect = 2e-44
Identities = 63/227 (27%), Positives = 119/227 (52%), Gaps = 21/227 (9%)
Query: 71 LTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSDRPCTFQ 130
L+D E+ Q +F G++TT++ SF + + THP++Q K+ +EID + + P T+
Sbjct: 263 LSDLELVAQSIIFIFAGYETTSSVLSFIMYELATHPDVQQKLQEEIDAVLPN-KAPPTYD 321
Query: 131 DTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKLNSCDLTIP 190
L+M+Y++ + ETLR+FP + R +++V++N + IP
Sbjct: 322 TVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEIN-------------------GMFIP 362
Query: 191 ANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFSAGPRSCVGRKYAM 250
V+I +Y +HR P + P+ + P+ F + N Y + PF +GPR+C+G ++A+
Sbjct: 363 KGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGMRFAL 422
Query: 251 LKLKVILSTILRNFTVHSPTKLE-DWKLQGDIILKRTDGFKVKLTPR 296
+ +K+ L +L+NF+ + + KL +L+ +K+ R
Sbjct: 423 MNMKLALIRVLQNFSFKPCKETQIPLKLSLGGLLQPEKPVVLKVESR 469
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 151 bits (381), Expect = 5e-43
Identities = 54/253 (21%), Positives = 97/253 (38%), Gaps = 21/253 (8%)
Query: 46 DEDVGEKKRLAFLDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTH 105
+ + + L + + + + + V ++ F G +TT+ + +M +
Sbjct: 231 PSNPRDFIDVYLLRMEKDKSDPSSEFHHQNLILTVLSLFFAGTETTSTTLRYGFLLMLKY 290
Query: 106 PEIQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKL 165
P + +V +EI+++ G RP D +M Y + I E R+ +P
Sbjct: 291 PHVTERVQKEIEQVIGS-HRPPALDDRAKMPYTDAVIHEIQRLGDLIPFGVPHTVT---- 345
Query: 166 NSCDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKC 225
D IP N V P + P+ +NP +FL
Sbjct: 346 --KDTQF------------RGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANG 391
Query: 226 ANRHYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDI--IL 283
A + F+PFS G R C+G A +L + +TIL+NF++ SP ED L +
Sbjct: 392 ALKRNEGFMPFSLGKRICLGEGIARTELFLFFTTILQNFSIASPVPPEDIDLTPRESGVG 451
Query: 284 KRTDGFKVKLTPR 296
++++ R
Sbjct: 452 NVPPSYQIRFLAR 464
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 463
Score = 139 bits (351), Expect = 1e-38
Identities = 56/226 (24%), Positives = 101/226 (44%), Gaps = 21/226 (9%)
Query: 72 TDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSDRPCTFQD 131
+ E + V ++ G +TT + + M +P IQ +V +EID I G + +P ++ D
Sbjct: 257 SKENLIFSVGELIIAGTETTTNVLRWAILFMALYPNIQGQVQKEIDLIMGPNGKP-SWDD 315
Query: 132 TLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKLNSCDLTIPA 191
+M Y E + E LR VP L I +++ + +IP
Sbjct: 316 KCKMPYTEAVLHEVLRFCNIVP----------------LGIFHATSEDAVVR--GYSIPK 357
Query: 192 NCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFSAGPRSCVGRKYAML 251
TV+ Y +H + +P+V++P+ FL + VPFS G R C+G A +
Sbjct: 358 GTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALVPFSLGRRHCLGEHLARM 417
Query: 252 KLKVILSTILRNFTVHSPTKLE-DWKLQGDIILKRTDGFKVKLTPR 296
++ + + +L+ F +H P +L D K + + L+ + + R
Sbjct: 418 EMFLFFTALLQRFHLHFPHELVPDLKPRLGMTLQPQP-YLICAERR 462
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 122 bits (307), Expect = 2e-32
Identities = 55/228 (24%), Positives = 98/228 (42%), Gaps = 21/228 (9%)
Query: 72 TDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSDRPCTFQD 131
T E ++ + G +TT+ + L ++ HPE+ AKV +EI+ + G + P QD
Sbjct: 258 TIESLENTAVDLFGAGTETTSTTLRYALLLLLKHPEVTAKVQEEIERVIGRNRSP-CMQD 316
Query: 132 TLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKLNSCDLTIPA 191
M Y + + E R +P T ++K + IP
Sbjct: 317 RSHMPYTDAVVHEVQRYIDLLPTSLPH----------------AVTCDIKFRNY--LIPK 358
Query: 192 NCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFSAGPRSCVGRKYAML 251
T++I + +PNP++++P +FL E + F+PFSAG R CVG A +
Sbjct: 359 GTTILISLTSVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEALAGM 418
Query: 252 KLKVILSTILRNFTVHSPTKLEDWKLQGDI--ILKRTDGFKVKLTPRK 297
+L + L++IL+NF + S ++ + +++ P
Sbjct: 419 ELFLFLTSILQNFNLKSLVDPKNLDTTPVVNGFASVPPFYQLCFIPIH 466
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
megaterium [TaxId: 1404]}
Length = 453
Score = 115 bits (288), Expect = 6e-30
Identities = 49/233 (21%), Positives = 105/233 (45%), Gaps = 25/233 (10%)
Query: 66 QNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSDR 125
+ G L DE I+ Q+ T + GH+TT+ SF L + +P + K +E + D
Sbjct: 242 ETGEPLDDENIRYQIITFLIAGHETTSGLLSFALYFLVKNPHVLQKAAEEAARVL--VDP 299
Query: 126 PCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKLNSC 185
+++ ++KY+ + E LR++P P + +++ L
Sbjct: 300 VPSYKQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGE----------------- 342
Query: 186 DLTIPANCTVVIGTYKIHRQPDTY-PNPDVYNPDNFLPEKCANRHYYSFVPFSAGPRSCV 244
+ +++ ++HR + + + + P+ F +H +F PF G R+C+
Sbjct: 343 -YPLEKGDELMVLIPQLHRDKTIWGDDVEEFRPERFENPSAIPQH--AFKPFGNGQRACI 399
Query: 245 GRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDIILKRTDGFKVKLTPRK 297
G+++A+ + ++L +L++F T + ++ + L + +GF VK +K
Sbjct: 400 GQQFALHEATLVLGMMLKHFDFEDHTN-YELDIKETLTL-KPEGFVVKAKSKK 450
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol
demethylase (cyp51) {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 445
Score = 101 bits (251), Expect = 6e-25
Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 2/107 (1%)
Query: 192 NCTVVIGTYKIHRQPDTYPNPDVYNPDNFL-PEKCANRHYYSFVPFSAGPRSCVGRKYAM 250
V +R P+ +P+P + P + P + + ++++PF AG CVG +A+
Sbjct: 338 GDLVAASPAISNRIPEDFPDPHDFVPARYEQPRQEDLLNRWTWIPFGAGRHRCVGAAFAI 397
Query: 251 LKLKVILSTILRNFTVHSPTKLEDWKL-QGDIILKRTDGFKVKLTPR 296
+++K I S +LR + E ++ ++++ V+ R
Sbjct: 398 MQIKAIFSVLLREYEFEMAQPPESYRNDHSKMVVQLAQPAAVRYRRR 444
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 94.3 bits (233), Expect = 2e-22
Identities = 19/117 (16%), Positives = 39/117 (33%), Gaps = 8/117 (6%)
Query: 185 CDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFSAG----P 240
+ +V++ Y + P + +PD + P+ F + + +P G
Sbjct: 299 NNCEFKKGTSVLLDLYGTNHDPRLWDHPDEFRPERFAER---EENLFDMIPQGGGHAEKG 355
Query: 241 RSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDIILKRTDGFKVKLTPRK 297
C G + +K L ++ P + + L + GF + RK
Sbjct: 356 HRCPGEGITIEVMKASLDFLVHQIEYDVPEQSLHYSLAR-MPSLPESGFVMSGIRRK 411
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 402
Score = 86.4 bits (212), Expect = 9e-20
Identities = 41/244 (16%), Positives = 80/244 (32%), Gaps = 48/244 (19%)
Query: 51 EKKRLAFLDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQA 110
E L+ + L+ +E+ ++ G + + + ++ THP+ A
Sbjct: 204 EPGDDLLSALIRVQDDDDGRLSADELTSIALVLLLAGFEASVSLIGIGTYLLLTHPDQLA 263
Query: 111 KVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDL 170
V ++ + + E LR P R +EV+
Sbjct: 264 LVRRD-------------------PSALPNAVEEILRYIAPPETTTRFAAEEVE------ 298
Query: 171 TIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHY 230
+ IP TV++ +R P +P+P ++ R
Sbjct: 299 -------------IGGVAIPQYSTVLVANGAANRDPKQFPDPHRFDVT---------RDT 336
Query: 231 YSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNF-TVHSPTKLEDWKLQGDIILKRTDGF 289
+ F G C+GR A L+ +V L + F + +D + ++L+ D
Sbjct: 337 RGHLSFGQGIHFCMGRPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLLRGIDHL 396
Query: 290 KVKL 293
V+L
Sbjct: 397 PVRL 400
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 82.9 bits (203), Expect = 2e-18
Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 11/111 (9%)
Query: 185 CDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFSAGPRSCV 244
I +++ +R + + NPD ++ R + F G C+
Sbjct: 328 RGQNIKRGDRIMLSYPSANRDEEVFSNPDEFDIT---------RFPNRHLGFGWGAHMCL 378
Query: 245 GRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDIILKRTDGFKVKLTP 295
G+ A L++K+ +L + +L + ++ T
Sbjct: 379 GQHLAKLEMKIFFEELLPKLKSVELS--GPPRLVATNFVGGPKNVPIRFTK 427
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 82.5 bits (202), Expect = 2e-18
Identities = 30/229 (13%), Positives = 71/229 (31%), Gaps = 46/229 (20%)
Query: 67 NGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSDRP 126
+G L+ EE+++ + ++ G++TT + + T P+ A V + +
Sbjct: 217 DGDRLSPEELRDTLLLMISAGYETTVNVIDQAVHTLLTRPDQLALVRKGEVTWADVVEET 276
Query: 127 CTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKLNSCD 186
+ ++ + + + +P T
Sbjct: 277 LRHEPAVKHLPLRYAVTDI-------------------------ALPDGRT--------- 302
Query: 187 LTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFSAGPRSCVGR 246
I ++ +R PD + + D ++ + E + F G C+G
Sbjct: 303 --IARGEPILASYAAANRHPDWHEDADTFDATRTVKE---------HLAFGHGVHFCLGA 351
Query: 247 KYAMLKLKVILSTILRNF-TVHSPTKLEDWKLQGDIILKRTDGFKVKLT 294
A +++ + L ++ F + E+ +I V L
Sbjct: 352 PLARMEVTLALESLFGRFPDLRLADPAEELPPVPSLISNGHQRLPVLLH 400
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Length = 385
Score = 82.1 bits (201), Expect = 2e-18
Identities = 23/95 (24%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
Query: 203 HRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILR 262
Q +P+ + + P+ FL E+ + PF G R C+GR +A+L+ ++L R
Sbjct: 298 VTQRLHFPDGEAFRPERFLEER--GTPSGRYFPFGLGQRLCLGRDFALLEGPIVLRAFFR 355
Query: 263 NFTVHSPTKLEDWKLQGDIILKRTDGFKVKLTPRK 297
F + L ++ + L+ G + PR+
Sbjct: 356 RFRL---DPLPFPRVLAQVTLRPEGGLPAR--PRE 385
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 81.8 bits (200), Expect = 4e-18
Identities = 22/199 (11%), Positives = 50/199 (25%), Gaps = 12/199 (6%)
Query: 100 CVMGTHPEIQAKVIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIAREL 159
G H V + + + + L + A
Sbjct: 214 SENGDHLTDAEIVSTLQLMVAAGHETTISLIVNAVVNLSTHPEQRALVLSGEAEWSAVVE 273
Query: 160 QQEVKLNSCDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTY-PNPDVYNPD 218
+ + ++V + IPA +++ + R + P D ++
Sbjct: 274 ETLRFSTPTSHVLIRFAAEDVPVGDRV--IPAGDALIVSYGALGRDERAHGPTADRFDLT 331
Query: 219 NFLPEKCANRHYYSFVPFSAGPRSCVGRKYAMLKLKVILSTILRNF-TVHSPTKLEDWKL 277
+ F GP C G + ++ V L + F + + +
Sbjct: 332 RTSG--------NRHISFGHGPHVCPGAALSRMEAGVALPALYARFPHLDLAVPAAELRN 383
Query: 278 QGDIILKRTDGFKVKLTPR 296
+ + V+L
Sbjct: 384 KPVVTQNDLFELPVRLAHH 402
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
[TaxId: 56]}
Length = 401
Score = 81.0 bits (198), Expect = 6e-18
Identities = 41/239 (17%), Positives = 72/239 (30%), Gaps = 48/239 (20%)
Query: 57 FLDLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEI 116
L +L+++ +G L+ +E+ V I+ G DTT +F + + PE V E
Sbjct: 210 VLTMLLQAEADGSRLSTKELVALVGAIIAAGTDTTIYLIAFAVLNLLRSPEALELVKAEP 269
Query: 117 DEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANC 176
+ D F + L + + +
Sbjct: 270 GLMRNALDEVLRFDNILRIGTVRFARQDLEY----------------------------- 300
Query: 177 TQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPF 236
C +I V + R + PDV++ R + + +
Sbjct: 301 --------CGASIKKGEMVFLLIPSALRDGTVFSRPDVFDVR---------RDTSASLAY 343
Query: 237 SAGPRSCVGRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDIILKRTDGFKVKLTP 295
GP C G A L+ ++ + TI R F E + + V L P
Sbjct: 344 GRGPHVCPGVSLARLEAEIAVGTIFRRFPEMKLK--ETPVFGYHPAFRNIESLNVILKP 400
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase
{Fungus (Fusarium oxysporum) [TaxId: 5507]}
Length = 399
Score = 78.3 bits (191), Expect = 5e-17
Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 7/80 (8%)
Query: 185 CDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFSAGPRSCV 244
D + AN ++ +R + + NPD +N + P + F G C+
Sbjct: 297 GDKLVRANEGIIASNQSANRDEEVFENPDEFNMNRKWPP-------QDPLGFGFGDHRCI 349
Query: 245 GRKYAMLKLKVILSTILRNF 264
A +L + ST+ + F
Sbjct: 350 AEHLAKAELTTVFSTLYQKF 369
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 77.5 bits (189), Expect = 1e-16
Identities = 28/192 (14%), Positives = 56/192 (29%), Gaps = 14/192 (7%)
Query: 73 DEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSDRPCTFQDT 132
+ + E + T E++ +Q + + GD +
Sbjct: 187 SRYLLAMIARERKEPGEGMIGAVVAEYGDDATDEELRGFCVQVM--LAGDDNISGMIGLG 244
Query: 133 LEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQEVKLNSCDLTIPAN 192
+ ++ R A + + L P +++ L I
Sbjct: 245 VLAMLRHPEQIDAFRGDEQSAQRAVD-ELIRYLTVPYSPTPRIAREDLTL--AGQEIKKG 301
Query: 193 CTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFSAGPRSCVGRKYAMLK 252
+V+ +R P P+ D + R V F G C+G A L+
Sbjct: 302 DSVICSLPAANRDPALAPDVDRLDVT---------REPIPHVAFGHGVHHCLGAALARLE 352
Query: 253 LKVILSTILRNF 264
L+ + + + R F
Sbjct: 353 LRTVFTELWRRF 364
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida
[TaxId: 303]}
Length = 404
Score = 75.1 bits (183), Expect = 7e-16
Identities = 15/124 (12%), Positives = 31/124 (25%), Gaps = 24/124 (19%)
Query: 185 CDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFSAGPRSCV 244
+ + +++ P + R S F G C+
Sbjct: 298 HGVQLKKGDQILLPQMLSGLDERENACPMHVDFS---------RQKVSHTTFGHGSHLCL 348
Query: 245 GRKYAMLKLKVILSTILRNFTVHSPTKLEDWKLQGDIILKRTDGF-------KVKLTPRK 297
G+ A ++ V L L D+ + ++ G + P
Sbjct: 349 GQHLARREIIVTLKEWLTRI--------PDFSIAPGAQIQHKSGIVSGVQALPLVWDPAT 400
Query: 298 KQTV 301
+ V
Sbjct: 401 TKAV 404
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 72.9 bits (177), Expect = 4e-15
Identities = 21/80 (26%), Positives = 29/80 (36%), Gaps = 9/80 (11%)
Query: 185 CDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFSAGPRSCV 244
I A V+ +R P+PDV + + R S V F G CV
Sbjct: 304 DGQLIKAGDYVLCSILMANRDEALTPDPDVLDAN---------RAAVSDVGFGHGIHYCV 354
Query: 245 GRKYAMLKLKVILSTILRNF 264
G A L++ T+ R F
Sbjct: 355 GAALARSMLRMAYQTLWRRF 374
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 72.5 bits (176), Expect = 4e-15
Identities = 21/120 (17%), Positives = 42/120 (35%), Gaps = 10/120 (8%)
Query: 176 CTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVP 235
+ + I A V + +R P+ +P+PD + + R V
Sbjct: 288 RIALEDVEIKGVRIRAGDAVYVSYLAANRDPEVFPDPDRIDFE---------RSPNPHVS 338
Query: 236 FSAGPRSCVGRKYAMLKLKVILSTILRNF-TVHSPTKLEDWKLQGDIILKRTDGFKVKLT 294
F GP C G A L+ ++++ +L + ED + +++ + V
Sbjct: 339 FGFGPHYCPGGMLARLESELLVDAVLDRVPGLKLAVAPEDVPFKKGALIRGPEALPVTWH 398
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 395
Score = 71.7 bits (174), Expect = 9e-15
Identities = 14/90 (15%), Positives = 28/90 (31%), Gaps = 8/90 (8%)
Query: 175 NCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFV 234
+ D+ + V++ + P+ +PNP D P S +
Sbjct: 284 PRLATADIQVGDVLVRKGELVLVLLEGANFDPEHFPNPGSIELDRPNP--------TSHL 335
Query: 235 PFSAGPRSCVGRKYAMLKLKVILSTILRNF 264
F G C G ++ + +L+
Sbjct: 336 AFGRGQHFCPGSALGRRHAQIGIEALLKKM 365
>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 367
Score = 66.4 bits (160), Expect = 6e-13
Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 9/91 (9%)
Query: 185 CDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFSAGPRSCV 244
D I V + +R + + +PD + PD R + F +G C+
Sbjct: 268 RDQVIDEGELVRVWIASANRDEEVFKDPDSFIPD---------RTPNPHLSFGSGIHLCL 318
Query: 245 GRKYAMLKLKVILSTILRNFTVHSPTKLEDW 275
G A L+ ++ L + F V K E
Sbjct: 319 GAPLARLEARIALEEFAKKFRVKEIVKKEKI 349
>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 366
Score = 62.9 bits (151), Expect = 8e-12
Identities = 34/206 (16%), Positives = 63/206 (30%), Gaps = 49/206 (23%)
Query: 59 DLLIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDE 118
+ S L+D E + ++ G++TT S +
Sbjct: 182 GTEVVSRVVNSNLSDIEKLGYIILLLIAGNETTTNLISNSVIDFTRF------------- 228
Query: 119 IFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLNSCDLTIPANCTQ 178
+Q E + I E LR PPV R+ ++ V
Sbjct: 229 --------NLWQRIREENLYLKAIEEALRYSPPVMRTVRKTKERV--------------- 265
Query: 179 EVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFVPFSA 238
D TI V + +R + + + + + PD R+ + F +
Sbjct: 266 ----KLGDQTIEEGEYVRVWIASANRDEEVFHDGEKFIPD---------RNPNPHLSFGS 312
Query: 239 GPRSCVGRKYAMLKLKVILSTILRNF 264
G C+G A L+ ++ + + F
Sbjct: 313 GIHLCLGAPLARLEARIAIEEFSKRF 338
>d1bxni_ d.73.1.1 (I:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Alcaligenes eutrophus [TaxId:
106590]}
Length = 129
Score = 31.7 bits (72), Expect = 0.042
Identities = 12/59 (20%), Positives = 25/59 (42%), Gaps = 13/59 (22%)
Query: 71 LTDEEIKEQVD-------TIMFEGHDTTAAGSSFFLCVMGTHPEIQAK----VIQEIDE 118
LTDE+I +Q++ + E D ++++ M P + ++ EI+
Sbjct: 14 LTDEQITKQLEYCLNQGWAVGLEYTDDPHPRNTYW--EMFGLPMFDLRDAAGILMEINN 70
>d1bwvs_ d.73.1.1 (S:) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Galdieria partita [TaxId: 83374]}
Length = 138
Score = 30.6 bits (69), Expect = 0.12
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 13/59 (22%)
Query: 71 LTDEEIKEQVD-------TIMFEGHDTTAAGSSFFLCVMGTHPEIQAK----VIQEIDE 118
LTDE+IK+Q+D I E + ++++ + P V+ EI+
Sbjct: 14 LTDEQIKKQIDYMISKKLAIGIEYTNDIHPRNAYW--EIWGLPLFDVTDPAAVLFEINA 70
>d1ofda3 d.153.1.1 (A:1-430) Alpha subunit of glutamate synthase,
N-terminal domain {Synechocystis sp. [TaxId: 1143]}
Length = 430
Score = 28.8 bits (64), Expect = 0.74
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 43 LDVDE-DVGEKKRLAFLDLLIESAQNGVVLTDEEIKEQV 80
+D+ E D+ EK RLA ++ +L + +IK+Q
Sbjct: 371 VDLPEVDIVEKGRLAPGQMIAVDLAEQKILKNYQIKQQA 409
>d1ea0a3 d.153.1.1 (A:1-422) Alpha subunit of glutamate synthase,
N-terminal domain {Azospirillum brasilense [TaxId: 192]}
Length = 422
Score = 28.0 bits (62), Expect = 1.4
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Query: 43 LDVDE-DVGEKKRLAFLDLLIESAQNGVVLTDEEIKEQV 80
+ +DE V EK RL +++ Q+G + D E+K+ +
Sbjct: 372 VKIDETQVIEKGRLGPGEMIAVDLQSGKLYRDRELKDHL 410
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli
[TaxId: 562]}
Length = 70
Score = 25.9 bits (57), Expect = 1.8
Identities = 11/53 (20%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
Query: 61 LIESAQNGVVLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMG---THPEIQA 110
+I ++G L+DEEI+ ++ I + + ++ + + T PE +
Sbjct: 7 IIRKKRDGHALSDEEIRFFINGIR-DNTISEGQIAALAMTIFFHDMTMPERVS 58
>d3ctda1 a.80.1.2 (A:258-420) Uncharacterized protein YrvN
{Prochlorococcus marinus [TaxId: 1219]}
Length = 163
Score = 27.2 bits (60), Expect = 1.8
Identities = 4/33 (12%), Positives = 10/33 (30%), Gaps = 2/33 (6%)
Query: 201 KIHRQPDTYPN--PDVYNPDNFLPEKCANRHYY 231
K + P+ + +LP ++
Sbjct: 119 KNNASNYLNPHNYQGKWLQQEYLPTDLQGIKFW 151
>d2cr9a1 d.297.1.1 (A:8-133) Poly [ADP-ribose] polymerase-1,
PARP-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 26.3 bits (58), Expect = 2.9
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 5/39 (12%)
Query: 13 KEEKKAEEKVKDKTVVEGLSYGQSSGLKDDLDVDEDVGE 51
K EK+ + +K V+ SGL+ V E G+
Sbjct: 1 KSEKRMKLTLKGGAAVD-----PDSGLEHSAHVLEKGGK 34
>d1svdm1 d.73.1.1 (M:3-110) Ribulose 1,5-bisphosphate
carboxylase-oxygenase {Halothiobacillus neapolitanus
[TaxId: 927]}
Length = 108
Score = 25.9 bits (57), Expect = 3.1
Identities = 9/59 (15%), Positives = 20/59 (33%), Gaps = 13/59 (22%)
Query: 71 LTDEEIKEQVD-------TIMFEGHDTTAAGSSFFLCVMGTHPEIQA----KVIQEIDE 118
+ E I+ Q+ + E + + + ++ M P V+ EI+
Sbjct: 20 MNAERIRAQIKYAIAQGWSPGIEHVEVKNSMNQYW--YMWKLPFFGEQNVDNVLAEIEA 76
>d3b2ua1 c.10.2.5 (A:312-480) EGF receptor extracellular domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 169
Score = 26.5 bits (58), Expect = 3.3
Identities = 8/53 (15%), Positives = 17/53 (32%)
Query: 168 CDLTIPANCTQEVKLNSCDLTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNF 220
C+ + +N+ ++ NCT + G I + P +
Sbjct: 2 CNGIGIGEFKDSLSINATNIKHFKNCTSISGDLHILPVAFRGDSFTHTPPLDP 54
>d1brwa1 a.46.2.1 (A:1-70) Pyrimidine nucleoside phosphorylase
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 70
Score = 25.1 bits (55), Expect = 3.5
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 61 LIESAQNGVVLTDEEIKEQVDTIM 84
LI ++G LT EEI+ V
Sbjct: 6 LIAKKRDGKALTKEEIEWIVRGYT 29
>d1x9fd_ a.1.1.2 (D:) Extracellular dodecameric hemoglobin
(erythrocruorin), subunit D1 {Common earthworm
(Lumbricus terrestris) [TaxId: 6398]}
Length = 140
Score = 25.8 bits (56), Expect = 4.3
Identities = 11/42 (26%), Positives = 19/42 (45%)
Query: 70 VLTDEEIKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAK 111
V ++K Q + H+ A G + ++ HPEI+A
Sbjct: 4 VTESLKVKLQWASAFGHAHERVAFGLELWRDIIDDHPEIKAP 45
>d1mzua_ d.110.3.1 (A:) PYP domain of sensor histidine kinase Ppr
{Rhodospirillum centenum [TaxId: 34018]}
Length = 110
Score = 25.4 bits (55), Expect = 4.5
Identities = 14/99 (14%), Positives = 23/99 (23%), Gaps = 8/99 (8%)
Query: 56 AFLDLLIESAQNGVVLTDEE--IKEQVDT--IMFEGHDTTAAGSSFFLCVMGTHPEIQAK 111
++ G + D I T + G +FF V P
Sbjct: 3 GMGTAEFDALPVGAIQVDGSGVIHRYNRTESRLSGRIPERVIGRNFFTEV---APCTNIP 59
Query: 112 VIQEIDEIFGDSDRPCTFQDTLEMKYMERCIMETLRMFP 150
S D + M ++ +RM
Sbjct: 60 AFSGRFMDGVTSGTLDARFDFVFDFQMAPVRVQ-IRMQN 97
>d1sctb_ a.1.1.2 (B:) Hemoglobin I {Ark clam (Scapharca
inaequivalvis) [TaxId: 6561]}
Length = 150
Score = 25.4 bits (55), Expect = 5.7
Identities = 12/108 (11%), Positives = 29/108 (26%), Gaps = 6/108 (5%)
Query: 62 IESAQNGVVLTDEE---IKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDE 118
+ N VV ++ ++ + D G + T P + K + D
Sbjct: 2 VAELANAVVSNADQKDLLRMSWGVL---SVDMEGTGLMLMANLFKTSPSAKGKFARLGDV 58
Query: 119 IFGDSDRPCTFQDTLEMKYMERCIMETLRMFPPVPVIARELQQEVKLN 166
G + M ++ + + V+ + +
Sbjct: 59 SAGKDNSKLRGHSITLMYALQNFVDALDDVERLKCVVEKFAVNHINRQ 106
>d1h97a_ a.1.1.2 (A:) Trematode hemoglobin/myoglobin {Paramphistomum
epiclitum [TaxId: 54403]}
Length = 147
Score = 25.4 bits (55), Expect = 6.0
Identities = 9/82 (10%), Positives = 25/82 (30%), Gaps = 9/82 (10%)
Query: 71 LTDEE---IKEQVDTIMFEGHDTTAAGSSFFLCVMGTHPEIQAKVIQEIDEIFGDSDRPC 127
LT E + +++ + G + + HP+ + + +
Sbjct: 2 LTKHEQDILLKELGPHVDTPAHIVETGLGAYHALFTAHPQYISHFSR------LEGHTIE 55
Query: 128 TFQDTLEMKYMERCIMETLRMF 149
+ +K+ R + E +
Sbjct: 56 NVMQSEGIKHYARTLTEAIVHM 77
>d1r89a2 d.218.1.7 (A:1-142) tRNA nucleotidyltransferase,
N-terminal domain {Archaeon Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 142
Score = 25.2 bits (55), Expect = 7.0
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 12 IKEEKKAEEKVKDKTVVEGLSYGQSSGLKDDLDVD 46
+EE + V SY +++ LK L++D
Sbjct: 27 AEEELRRRLDELGVEYVFVGSYARNTWLKGSLEID 61
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 25.6 bits (55), Expect = 7.4
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 1/58 (1%)
Query: 178 QEVKLNSCD-LTIPANCTVVIGTYKIHRQPDTYPNPDVYNPDNFLPEKCANRHYYSFV 234
QE+ D +++P+ C +++ K+ Y + D E +N Y F
Sbjct: 44 QELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFT 101
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.136 0.401
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,164,157
Number of extensions: 56315
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 41
Length of query: 302
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,240,546
Effective search space: 269198482
Effective search space used: 269198482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.1 bits)