BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy494
(207 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HHD|A Chain A, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|B Chain B, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|C Chain C, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design.
pdb|3HHD|D Chain D, Structure Of The Human Fatty Acid Synthase Ks-Mat Didomain
As A Framework For Inhibitor Design
Length = 965
Score = 134 bits (336), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 64/134 (47%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Query: 62 QPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHG 121
+PRS++W+S+SI E W S LA+TSSAEY+ NNL+S V F+EA H+P +A+ +EIAPH
Sbjct: 708 KPRSARWLSTSIPEAQWHSSLARTSSAEYNVNNLVSPVLFQEALWHVPEHAVVLEIAPHA 767
Query: 122 LLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVS 181
LLQA+LKR L + IPL + +D ++F L IG+L+L+G+D N L+P V++P
Sbjct: 768 LLQAVLKRGLKPSCTI-IPLMKKDHRDNLEFFLAGIGRLHLSGIDANPNALFPPVEFPAP 826
Query: 182 RGTKPLGHFVDWEH 195
RGT + + W+H
Sbjct: 827 RGTPLISPLIKWDH 840
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 1 MGSQWNGMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAA 60
MG+QW GMG L+R+ FR S+ R D +KP G+ + +L STD + FD+I++SFV + A
Sbjct: 501 MGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDDIVHSFVSLTA 560
Query: 61 CQ 62
Q
Sbjct: 561 IQ 562
>pdb|2VZ8|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ8|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase
pdb|2VZ9|A Chain A, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
pdb|2VZ9|B Chain B, Crystal Structure Of Mammalian Fatty Acid Synthase In
Complex With Nadp
Length = 2512
Score = 134 bits (336), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 111/188 (59%), Gaps = 8/188 (4%)
Query: 18 FRQSMERLDAVLKP--HGVDLFH--ILTSTDNTLFDNILNSFVGIAACQPRSSKWISSSI 73
F Q ++R D +K G FH + S TL + I +PRS +W+S+SI
Sbjct: 661 FLQQLKREDVFVKEVRTGGIAFHSYFMESIAPTLLRQLRKV---ILDPKPRSKRWLSTSI 717
Query: 74 LEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSLAE 133
E W LA+T SAEY NNL+S V F+EA H+PA+A+ +EIAPH LLQA+LKRSL E
Sbjct: 718 PEAQWQGSLARTFSAEYSVNNLVSPVLFQEALQHVPAHAVVVEIAPHALLQAVLKRSL-E 776
Query: 134 KEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVSRGTKPLGHFVDW 193
IPL + +D ++F L+++G+L+L G+ +N L+P V++P RGT + + W
Sbjct: 777 SSCTIIPLMKKDHRDNLEFFLSNVGRLHLAGVSVNPNGLFPPVEFPAPRGTPLISPHIKW 836
Query: 194 EHGHEYKL 201
+H + +
Sbjct: 837 DHSQAWDV 844
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 1 MGSQWNGMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAA 60
MG+QW GMG L+R+ FR S+ R D LKP G+ + +L STD + D+I++SFV + +
Sbjct: 499 MGAQWQGMGLSLMRLDRFRDSILRSDQALKPLGLRVSDLLLSTDEAVLDDIVSSFVSLTS 558
Query: 61 CQ 62
Q
Sbjct: 559 IQ 560
>pdb|2JFK|A Chain A, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|B Chain B, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|C Chain C, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
pdb|2JFK|D Chain D, Structure Of The Mat Domain Of Human Fas With Malonyl-Coa
Length = 433
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 62/123 (50%), Positives = 88/123 (71%), Gaps = 1/123 (0%)
Query: 62 QPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHG 121
+PRS++W+S+SI E W S LA+TSSAEY+ NNL+S V F+EA H+P +A+ +EIAPH
Sbjct: 308 KPRSARWLSTSIPEAQWHSSLARTSSAEYNVNNLVSPVLFQEALWHVPEHAVVLEIAPHA 367
Query: 122 LLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVS 181
LLQA+LKR L + IPL + +D ++F L IG+L+L+G+D N L+P V++P
Sbjct: 368 LLQAVLKRGLKPSCTI-IPLMKKDHRDNLEFFLAGIGRLHLSGIDANPNALFPPVEFPAP 426
Query: 182 RGT 184
RGT
Sbjct: 427 RGT 429
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 1 MGSQWNGMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAA 60
MG+QW GMG L+R+ FR S+ R D +KP G+ + +L STD + FD+I++SFV + A
Sbjct: 101 MGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDDIVHSFVSLTA 160
Query: 61 CQ 62
Q
Sbjct: 161 IQ 162
>pdb|2JFD|A Chain A, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|B Chain B, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|C Chain C, Structure Of The Mat Domain Of Human Fas
pdb|2JFD|D Chain D, Structure Of The Mat Domain Of Human Fas
Length = 425
Score = 121 bits (304), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 59/119 (49%), Positives = 85/119 (71%), Gaps = 1/119 (0%)
Query: 62 QPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHG 121
+PRS++W+S+SI E W S LA+TSSAEY+ NNL+S V F+EA H+P +A+ +EIAPH
Sbjct: 308 KPRSARWLSTSIPEAQWHSSLARTSSAEYNVNNLVSPVLFQEALWHVPEHAVVLEIAPHA 367
Query: 122 LLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPV 180
LLQA+LKR L + IPL + +D ++F L IG+L+L+G+D N L+P V++P
Sbjct: 368 LLQAVLKRGLKPSCTI-IPLMKKDHRDNLEFFLAGIGRLHLSGIDANPNALFPPVEFPA 425
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 1 MGSQWNGMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAA 60
MG+QW GMG L+R+ FR S+ R D +KP G+ + +L STD + FD+I++SFV + A
Sbjct: 101 MGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDDIVHSFVSLTA 160
Query: 61 CQ 62
Q
Sbjct: 161 IQ 162
>pdb|3TZW|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Orthorhombic Apoform At 2.6 A
pdb|3TZX|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZX|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In Tetragonal Apo Form At 2.3 A
pdb|3TZY|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZY|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Palmitoylated Form At 2.2 A
pdb|3TZZ|A Chain A, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
pdb|3TZZ|B Chain B, Crystal Structure Of A Fragment Containing The
Acyltransferase Domain Of Pks13 From Mycobacterium
Tuberculosis In The Carboxypalmitoylated Form At 2.5 A
Length = 491
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 63/155 (40%), Gaps = 7/155 (4%)
Query: 41 TSTDNTLFDNILNSFVGIAACQPRSSKWISSSILEDAWGSPLAQ-TSSAEYHTNNLLSSV 99
TS + L + GI P I S++ E + P + EY L SV
Sbjct: 339 TSQMDPLLGELTAELQGIKPTSPTCG--IFSTVHEGRYIKPGGEPIHDVEYWKKGLRHSV 396
Query: 100 FFEEA--SAHIPANAICIEIAPH--GLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILN 155
+F +A + +E+AP+ L+Q L + A + TL +D V +++
Sbjct: 397 YFTHGIRNAVDSGHTTFLELAPNPVALMQVALTTADAGLHDAQLIPTLARKQDEVSSMVS 456
Query: 156 SIGKLYLNGLDLNLAPLYPEVQYPVSRGTKPLGHF 190
++ +LY+ G DL++ L+ P P F
Sbjct: 457 TMAQLYVYGHDLDIRTLFSRASGPQDYANIPPTRF 491
>pdb|3PME|A Chain A, Crystal Structure Of The Receptor Binding Domain Of
Botulinum Neurotoxin CD MOSAIC SEROTYPE
pdb|4F83|A Chain A, Crystal Structure Of The Receptor Binding Domain Of
Botulinum Neurotoxin Mosaic Serotype CD WITH A
TETRAETHYLENE GLYCOL MOLECULE Bound On The Hcn
Sub-Domain And A Sulfate Ion At The Putative Active Site
Length = 420
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 46/116 (39%), Gaps = 23/116 (19%)
Query: 72 SILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSL 131
++++D WG+PL F+ I N I IAP + +++ S
Sbjct: 221 NVIKDYWGNPLK-----------------FDTEYYMINYNYIDRYIAPKNNILVLVQYSD 263
Query: 132 AEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVSRGTKPL 187
K P+T++ + N ++ LNG D+ LY +Y + R T +
Sbjct: 264 ISKLYTKNPITIKSAANK-----NPYSRI-LNGDDIMFHMLYDSREYMIIRDTDTI 313
>pdb|3N7J|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype D
Binding Domain
Length = 415
Score = 28.9 bits (63), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 23/116 (19%)
Query: 72 SILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSL 131
++++D WG+PL F+ I N I IAP + +++
Sbjct: 222 NVIKDYWGNPLK-----------------FDTEYYIINDNYIDRYIAPESNVLVLVQYPD 264
Query: 132 AEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVSRGTKPL 187
K P+T++ V D N ++ LNG ++ L LY +Y + R T +
Sbjct: 265 RSKLYTGNPITIKSVSDK-----NPYSRI-LNGDNIILHMLYNSRKYMIIRDTDTI 314
>pdb|3RMY|A Chain A, Crystal Structure Of HcrD W1238A MUTANT
pdb|3RMY|B Chain B, Crystal Structure Of HcrD W1238A MUTANT
pdb|3RMY|C Chain C, Crystal Structure Of HcrD W1238A MUTANT
pdb|3RMY|D Chain D, Crystal Structure Of HcrD W1238A MUTANT
Length = 415
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 23/116 (19%)
Query: 72 SILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSL 131
++++D WG+PL F+ I N I IAP + +++
Sbjct: 222 NVIKDYWGNPLK-----------------FDTEYYIINDNYIDRYIAPESNVLVLVQYPD 264
Query: 132 AEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVSRGTKPL 187
K P+T++ V D N ++ LNG ++ L LY +Y + R T +
Sbjct: 265 RSKLYTGNPITIKSVSDK-----NPYSRI-LNGDNIILHMLYNSRKYMIIRDTDTI 314
>pdb|3OGG|A Chain A, Crystal Structure Of The Receptor Binding Domain Of
Botulinum Neurotoxin D
Length = 414
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 23/116 (19%)
Query: 72 SILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSL 131
++++D WG+PL F+ I N I IAP + +++
Sbjct: 221 NVIKDYWGNPLK-----------------FDTEYYIINDNYIDRYIAPESNVLVLVQYPD 263
Query: 132 AEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVSRGTKPL 187
K P+T++ V D N ++ LNG ++ L LY +Y + R T +
Sbjct: 264 RSKLYTGNPITIKSVSDK-----NPYSRI-LNGDNIILHMLYNSRKYMIIRDTDTI 313
>pdb|1NMT|A Chain A, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1NMT|B Chain B, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1NMT|C Chain C, N-Myristoyl Transferase From Candida Albicans At 2.45 A
pdb|1IYK|A Chain A, Crystal Structure Of Candida Albicans
N-Myristoyltransferase With Myristoyl-Coa And Peptidic
Inhibitor
pdb|1IYK|B Chain B, Crystal Structure Of Candida Albicans
N-Myristoyltransferase With Myristoyl-Coa And Peptidic
Inhibitor
pdb|1IYL|A Chain A, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|B Chain B, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|C Chain C, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
pdb|1IYL|D Chain D, Crystal Structure Of Candida Albicans
N-myristoyltransferase With Non- Peptidic Inhibitor
Length = 392
Score = 28.9 bits (63), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
Query: 9 GTDLLRIPLFRQSMERL--DAVL--KPHGVDLFHILTSTDNTLF 48
+D P +++ + L DA++ K GVD+F+ LT DNT F
Sbjct: 300 ASDSFEKPNYKKRLNELITDALITSKKFGVDVFNCLTCQDNTYF 343
>pdb|3RMX|A Chain A, Crystal Structure Of HcrD F1240A MUTANT
pdb|3RMX|B Chain B, Crystal Structure Of HcrD F1240A MUTANT
pdb|3RMX|C Chain C, Crystal Structure Of HcrD F1240A MUTANT
pdb|3RMX|D Chain D, Crystal Structure Of HcrD F1240A MUTANT
Length = 415
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 47/116 (40%), Gaps = 23/116 (19%)
Query: 72 SILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSL 131
++++D WG+PL F+ I N I IAP + +++
Sbjct: 222 NVIKDYWGNPLK-----------------FDTEYYIINDNYIDRYIAPESNVLVLVQYPD 264
Query: 132 AEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVSRGTKPL 187
K P+T++ V D N ++ LNG ++ L LY +Y + R T +
Sbjct: 265 RSKLYTGNPITIKSVSDK-----NPYSRI-LNGDNIILHMLYNSRKYMIIRDTDTI 314
>pdb|3OBR|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype D
Binding Domain
pdb|3OBT|A Chain A, Crystal Structure Of Botulinum Neurotoxin Serotype D
Ligand Binding Domain In Complex With N-Acetylneuraminic
Acid
Length = 434
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/119 (23%), Positives = 48/119 (40%), Gaps = 23/119 (19%)
Query: 69 ISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHGLLQAILK 128
I ++++D WG+PL F+ I N I IAP + +++
Sbjct: 225 ILRNVIKDYWGNPLK-----------------FDTEYYIINDNYIDRYIAPESNVLVLVQ 267
Query: 129 RSLAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVSRGTKPL 187
K P+T++ V D N ++ LNG ++ L LY +Y + R T +
Sbjct: 268 YPDRSKLYTGNPITIKSVSDK-----NPYSRI-LNGDNIILHMLYNSRKYMIIRDTDTI 320
>pdb|1NNE|A Chain A, Crystal Structure Of The Muts-adpbef3-dna Complex
pdb|1NNE|B Chain B, Crystal Structure Of The Muts-adpbef3-dna Complex
Length = 765
Score = 28.5 bits (62), Expect = 3.1, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 63 PRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLS-SVFFEEASAHIPANAI 113
PR + ++++ D WG S+ E+ L S S ++E H PA +
Sbjct: 128 PREANYLAAIATGDGWGLAFLDVSTGEFKGTVLKSKSALYDELFRHRPAEVL 179
>pdb|1EWR|A Chain A, Crystal Structure Of Taq Muts
pdb|1EWR|B Chain B, Crystal Structure Of Taq Muts
Length = 649
Score = 28.1 bits (61), Expect = 3.3, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 63 PRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLS-SVFFEEASAHIPANAI 113
PR + ++++ D WG S+ E+ L S S ++E H PA +
Sbjct: 12 PREANYLAAIATGDGWGLAFLDVSTGEFKGTVLKSKSALYDELFRHRPAEVL 63
>pdb|1EWQ|A Chain A, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
pdb|1EWQ|B Chain B, Crystal Structure Taq Muts Complexed With A Heteroduplex
Dna At 2.2 A Resolution
Length = 765
Score = 28.1 bits (61), Expect = 3.3, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 63 PRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLS-SVFFEEASAHIPANAI 113
PR + ++++ D WG S+ E+ L S S ++E H PA +
Sbjct: 128 PREANYLAAIATGDGWGLAFLDVSTGEFKGTVLKSKSALYDELFRHRPAEVL 179
>pdb|1FW6|A Chain A, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
pdb|1FW6|B Chain B, Crystal Structure Of A Taq Muts-Dna-Adp Ternary Complex
Length = 768
Score = 28.1 bits (61), Expect = 3.3, Method: Composition-based stats.
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 63 PRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLS-SVFFEEASAHIPANAI 113
PR + ++++ D WG S+ E+ L S S ++E H PA +
Sbjct: 128 PREANYLAAIATGDGWGLAFLDVSTGEFKGTVLKSKSALYDELFRHRPAEVL 179
>pdb|2HG4|A Chain A, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|B Chain B, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|C Chain C, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|D Chain D, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|E Chain E, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs.
pdb|2HG4|F Chain F, Structure Of The Ketosynthase-acyltransferase Didomain Of
Module 5 From Debs
Length = 917
Score = 27.7 bits (60), Expect = 4.9, Method: Composition-based stats.
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 2 GSQWNGMGTDLLR-IPLFRQSMERLDAVLKPH 32
G+QW G DLLR +F S+ + L PH
Sbjct: 561 GAQWQGXARDLLRESQVFADSIRDCERALAPH 592
>pdb|2VXR|A Chain A, Crystal Structure Of The Botulinum Neurotoxin Serotype G
Binding Domain
Length = 482
Score = 27.3 bits (59), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
Query: 25 LDAVLKPHGVDLFHILTSTDNTLFDNI--LNSF-VGIAACQPRSSKWISSSI--LEDAWG 79
LD + + +D F ++ TD T F I N F + A + S WI SS L+D WG
Sbjct: 222 LDRINSSNDID-FKLINCTDTTKFVWIKDFNIFGRELNATEVSSLYWIQSSTNTLKDFWG 280
Query: 80 SPL 82
+PL
Sbjct: 281 NPL 283
>pdb|3MPP|G Chain G, Botulinum Neurotoxin Type G Receptor Binding Domain
Length = 433
Score = 26.9 bits (58), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 25 LDAVLKPHGVDLFHILTSTDNTLFD-----NILNSFVGIAACQPRSSKWISSSILEDAWG 79
LD + + +D F ++ TD T F NI + + R S++ L+D WG
Sbjct: 173 LDRINSSNDID-FKLINCTDTTKFVWIKDFNIFGRELNATEVEERYKIQSSTNTLKDFWG 231
Query: 80 SPL 82
+PL
Sbjct: 232 NPL 234
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,358,567
Number of Sequences: 62578
Number of extensions: 244558
Number of successful extensions: 641
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 26
length of query: 207
length of database: 14,973,337
effective HSP length: 94
effective length of query: 113
effective length of database: 9,091,005
effective search space: 1027283565
effective search space used: 1027283565
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)