Query psy494
Match_columns 207
No_of_seqs 149 out of 1669
Neff 9.5
Searched_HMMs 46136
Date Fri Aug 16 21:46:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1202|consensus 100.0 5.2E-30 1.1E-34 225.3 15.1 204 1-205 508-857 (2376)
2 PF00698 Acyl_transf_1: Acyl t 100.0 1.3E-29 2.7E-34 206.3 9.0 162 1-167 7-318 (318)
3 COG3321 Polyketide synthase mo 99.9 7E-24 1.5E-28 193.9 12.3 192 1-203 534-875 (1061)
4 TIGR02816 pfaB_fam PfaB family 99.9 9.6E-24 2.1E-28 179.8 11.7 88 87-175 441-538 (538)
5 TIGR02813 omega_3_PfaA polyket 99.9 7.5E-23 1.6E-27 198.0 15.0 111 62-175 811-926 (2582)
6 smart00827 PKS_AT Acyl transfe 99.8 3.4E-19 7.3E-24 143.8 12.1 130 1-133 4-285 (298)
7 TIGR00128 fabD malonyl CoA-acy 99.8 2.1E-18 4.5E-23 138.7 10.0 64 65-131 222-287 (290)
8 COG0331 FabD (acyl-carrier-pro 99.8 3.2E-18 7E-23 137.3 8.7 132 1-138 11-297 (310)
9 PLN02752 [acyl-carrier protein 99.7 1E-17 2.2E-22 137.7 10.6 67 63-132 266-334 (343)
10 TIGR03131 malonate_mdcH malona 99.7 2.1E-17 4.6E-22 133.3 9.0 67 64-133 210-278 (295)
11 KOG2926|consensus 99.6 1.1E-15 2.3E-20 120.8 6.5 124 1-131 71-360 (386)
12 PF13556 HTH_30: PucR C-termin 54.2 19 0.00041 21.3 2.9 34 2-38 12-46 (59)
13 PLN03219 uncharacterized prote 42.9 28 0.0006 23.7 2.6 19 14-35 65-83 (108)
14 PLN03220 uncharacterized prote 42.1 30 0.00065 23.4 2.6 19 14-35 63-81 (105)
15 PLN03090 auxin-responsive fami 41.4 31 0.00066 23.4 2.6 19 14-35 64-82 (104)
16 PF09863 DUF2090: Uncharacteri 38.9 45 0.00098 27.2 3.6 27 148-174 191-217 (311)
17 COG3892 Uncharacterized protei 35.6 52 0.0011 26.2 3.4 28 148-175 182-209 (310)
18 COG3036 Uncharacterized protei 32.8 61 0.0013 19.7 2.6 25 2-26 10-34 (66)
19 PF02519 Auxin_inducible: Auxi 30.9 47 0.001 22.2 2.2 20 14-36 60-79 (100)
20 COG0030 KsgA Dimethyladenosine 29.1 47 0.001 26.4 2.3 19 111-129 31-50 (259)
21 PF02416 MttA_Hcf106: mttA/Hcf 27.6 78 0.0017 18.4 2.5 27 4-30 21-48 (53)
22 PF08837 DUF1810: Protein of u 22.4 52 0.0011 23.5 1.3 29 14-42 66-95 (139)
23 TIGR01411 tatAE twin arginine- 21.2 61 0.0013 18.4 1.2 21 5-25 23-44 (47)
24 KOG0064|consensus 20.6 64 0.0014 28.8 1.7 36 3-42 618-653 (728)
25 KOG0820|consensus 20.0 86 0.0019 25.4 2.2 11 112-122 60-70 (315)
No 1
>KOG1202|consensus
Probab=99.97 E-value=5.2e-30 Score=225.26 Aligned_cols=204 Identities=50% Similarity=0.946 Sum_probs=187.8
Q ss_pred CCCchhhHHHHhhccHHHHHHHHHHHHhhccCCCChhhhhcccCchhhhhhHhhhhhhhh--------------------
Q psy494 1 MGSQWNGMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAA-------------------- 60 (207)
Q Consensus 1 ~GsQ~~gMg~~L~~~~~fr~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~~q~~l~~~~-------------------- 60 (207)
|||||+||+++|...+.||+.+.+|++++++.|+|+.++|...++..++++++..++++.
T Consensus 508 MGsQW~~Ma~~LMkl~~F~dsi~~~ae~l~~~gldv~~vL~~s~~~tfdn~l~sfvsitAiQiaLtDlLs~lgi~PDGIv 587 (2376)
T KOG1202|consen 508 MGSQWAGMAKDLMKLERFRDSIQRSAEVLKPFGLDVIDVLTRSDESTFDNILNSFVSITAIQIALTDLLSCLGIRPDGIV 587 (2376)
T ss_pred CcchhhHHHHHHhhhHHHHHHHHHHHhhhcccCcchhhhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence 899999999999999999999999999999999999999999988888888666654433
Q ss_pred ---------------------------------------------------------------c----------------
Q psy494 61 ---------------------------------------------------------------C---------------- 61 (207)
Q Consensus 61 ---------------------------------------------------------------c---------------- 61 (207)
|
T Consensus 588 GHS~GElgc~YaDGclt~EqtvlaAYwRG~sild~~l~kGaMAAVGLsWEq~~~~~P~~~~paCHNs~D~~TiSGp~a~v 667 (2376)
T KOG1202|consen 588 GHSLGELGCGYADGCLTQEQTVLAAYWRGQSILDTHLPKGAMAAVGLSWEQCKSRCPPDVVPACHNSKDNVTISGPQASV 667 (2376)
T ss_pred ccccchhcccccccccCHHHHHHHHHHcCceeccccCCCcchhhhcCCHHHHhccCCCcccccccCCCCceEecCChHHH
Confidence 1
Q ss_pred -----------------------------------------------ccCCCCceecccccCCCCCCCCCCCChHHHHHh
Q psy494 62 -----------------------------------------------QPRSSKWISSSILEDAWGSPLAQTSSAEYHTNN 94 (207)
Q Consensus 62 -----------------------------------------------~~~~~~~~~s~vt~~~~~~~~~~~~~~~y~~~~ 94 (207)
.+.+..|+++++....|.++.+....++|..+|
T Consensus 668 ~~~v~qL~~~gvFak~V~t~G~aFHS~~m~a~~p~l~~~l~k~i~epK~rsarWlSTSipEa~W~s~la~tsSA~Y~vnN 747 (2376)
T KOG1202|consen 668 FAFVEQLRAEGVFAKEVRTGGYAFHSPYMEAAAPPLRQSLEKVIPEPKPRSARWLSTSIPEAQWHSSLARTSSAEYHVNN 747 (2376)
T ss_pred HHHHHHhhhcCeeeeEecCCCccccCHHHHhhChHHHHHHHHhcCCCCCcccchhhccCChhhhcChhhhhcchhhhhhc
Confidence 455668999999999998887878899999999
Q ss_pred cccceeHHHHHhhccCCcEEEEeCCchhHHHHHHHHhcccccccccccccCCcChHHHHHHHHHHHHHcCCCCCCccCCC
Q psy494 95 LLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYP 174 (207)
Q Consensus 95 l~~pV~f~~~i~~l~~~~~~lEiGp~~~L~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~l~~L~~~G~~vdw~~~~~ 174 (207)
+.+||.|.++++.+.++.+.|||.||+-+...+|+.+ .+.+..++.+++++.+..+.|+..+++||.+|+.++-..+|+
T Consensus 748 l~SPVLF~eAlq~vP~nAv~vEiAPH~LlqAiLkRsL-~p~~t~v~Lmkr~h~~NlEffL~~lgrly~aG~~~qi~~l~p 826 (2376)
T KOG1202|consen 748 LVSPVLFHEALQHVPENAVVVEIAPHGLLQAILKRSL-KPSCTNVSLMKRGHRNNLEFFLAGLGRLYAAGIQPQILALFP 826 (2376)
T ss_pred cccHHHHHHHHHhCcccceEEEecchHHHHHHHHhhc-CCccceehhhcCcccccHHHHHHHHHHHHHccCCccceeccC
Confidence 9999999999999999999999999999999999987 678899999999987889999999999999999999999999
Q ss_pred CCcCCCCCCCCCCCCcccCCCCCcccCcccc
Q psy494 175 EVQYPVSRGTKPLGHFVDWEHGHEYKLSELE 205 (207)
Q Consensus 175 ~~~~~~~~~~~~~lP~y~f~~~~~w~~~~~~ 205 (207)
+..+|++||+|++-|..-|+|+.-|+.+++.
T Consensus 827 ~i~ypv~rGTPmi~~lv~WDHtq~W~~~~f~ 857 (2376)
T KOG1202|consen 827 PIEYPVPRGTPMIGPLVKWDHTQKWLVPKFP 857 (2376)
T ss_pred CCcccCCCCCcCcccccCccccccccccccC
Confidence 9999999999999999999999999988764
No 2
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=99.96 E-value=1.3e-29 Score=206.31 Aligned_cols=162 Identities=28% Similarity=0.480 Sum_probs=136.7
Q ss_pred CCCchhhHHHHhh-ccHHHHHHHHHHHHhhccC-CCChhhhhcccCc-hhhhhh--Hhhhhhhhh---------------
Q psy494 1 MGSQWNGMGTDLL-RIPLFRQSMERLDAVLKPH-GVDLFHILTSTDN-TLFDNI--LNSFVGIAA--------------- 60 (207)
Q Consensus 1 ~GsQ~~gMg~~L~-~~~~fr~~~~~~~~~l~~~-g~~l~~~l~~~~~-~~~~~~--~q~~l~~~~--------------- 60 (207)
+||||+|||++|| .+|.||+.+++|++++++. |+++.+++.++.. +.++++ .||++ +++
T Consensus 7 QGsq~~gMg~~L~~~~p~f~~~~~~~~~~l~~~~g~~l~~~l~~~~~~~~l~~~~~~qpai-~~~~~al~~~l~~~Gi~P 85 (318)
T PF00698_consen 7 QGSQYPGMGRDLYENNPVFRETIDRCDEILKELLGFSLLELLFEGPESEDLNDTEYAQPAI-FAIQVALARLLRSWGIKP 85 (318)
T ss_dssp TTS--TTTTHHHHHH-HHHHHHHHHHHHHHTSHHTS-HHHHHHHTTHCHHHTSHHHHHHHH-HHHHHHHHHHHHHTTHCE
T ss_pred cchhhHhHHHHHHHcChhhHHHHHhhhhhhhcccccchhhhhhcccccccccchheecchh-hhhhhhhhhhhccccccc
Confidence 5999999999999 9999999999999999998 9999999997764 456666 78887 544
Q ss_pred ------------------------------------------------------------------c-------------
Q psy494 61 ------------------------------------------------------------------C------------- 61 (207)
Q Consensus 61 ------------------------------------------------------------------c------------- 61 (207)
|
T Consensus 86 ~~v~GhSlGE~aA~~aaG~ls~e~a~~lv~~R~~~m~~~~~~g~m~av~~~~~~~~~~~~~~v~ia~~Ns~~q~visG~~ 165 (318)
T PF00698_consen 86 DAVIGHSLGEYAALVAAGALSLEDALRLVYERARLMDEAAPPGAMLAVRGEEEEEKLALPPDVEIANINSPRQVVISGER 165 (318)
T ss_dssp SEEEESTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHSTSEEEEEEESHHHHHHHHTTTTEEEEEEEETTEEEEEEEH
T ss_pred ceeeccchhhHHHHHHCCccchhhhhhhHHHHHHHHHHhhhcccccchhhhHHhhhccccccceeeeeccccccccCCCH
Confidence 0
Q ss_pred ----------------------------------------------ccCCCCceecccccCCCCCCCCCCCChHHHHHhc
Q psy494 62 ----------------------------------------------QPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNL 95 (207)
Q Consensus 62 ----------------------------------------------~~~~~~~~~s~vt~~~~~~~~~~~~~~~y~~~~l 95 (207)
..++.++++|+++|..+.++ ....+||++|+
T Consensus 166 ~~l~~~~~~l~~~~~~~~~l~v~~afHs~~m~~~~~~~~~~l~~~~~~~p~ip~~S~~~g~~~~~~---~~~~~~~~~~l 242 (318)
T PF00698_consen 166 EALEALVERLKAEGIKAKRLPVSYAFHSPLMEPAADEFREALESIEFRPPKIPVYSNVTGRPYDDP---ELIAEYWARQL 242 (318)
T ss_dssp HHHHHHHHHHHHTTSEEEEESSSSETTSGGGHHHHHHHHHHHHTSCSCCCSSEEEETTTSSBEHSH---HHHHHHHHHHH
T ss_pred HHHHHHHHHhhccceeEEEeeeeccccCchhhhhHHHHHhhhhccccccccccceeeccccccccc---ccchhHHHhcc
Confidence 45677889999999987542 23679999999
Q ss_pred ccceeHHHHHhhccCC--cEEEEeCCchhHHHHHHHHhc---ccccccccccccCCcChHHHHHHHHHHHHHcCCCC
Q psy494 96 LSSVFFEEASAHIPAN--AICIEIAPHGLLQAILKRSLA---EKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDL 167 (207)
Q Consensus 96 ~~pV~f~~~i~~l~~~--~~~lEiGp~~~L~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~l~~L~~~G~~v 167 (207)
++||+|.++++++.+. ++|||+||+++|++++++++. ...+..++++.++. ++..++++++++||+.|++|
T Consensus 243 ~~pV~f~~~v~~l~~~g~~~fiEiGP~~~L~~~~~~~l~~~~~~~~~~i~~~~~~~-~~~~~~~~~l~~l~~~Gv~~ 318 (318)
T PF00698_consen 243 RSPVRFREAVEALYEDGVRVFIEIGPGSVLTSLVKRILKSENGSDATLIPSLRRGH-DDLDTFLQALAQLFVSGVAV 318 (318)
T ss_dssp HSHEEHHHHHHHHHHTTEEEEEEESSSSHHHHHHHHHSTSETTTTSEEEESEBTTB-SCHHHHHHHHHHHHHTT-HH
T ss_pred CCcCChHHHHHHHHhcCCCEEEEeCchHHHHHHHHHHHhhccCCCeEEEeccCCCC-ChHHHHHHHHHHHHHcCCCC
Confidence 9999999999999664 899999999999999999997 36788999999999 88999999999999999864
No 3
>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.91 E-value=7e-24 Score=193.93 Aligned_cols=192 Identities=22% Similarity=0.343 Sum_probs=159.6
Q ss_pred CCCchhhHHHHhh-ccHHHHHHHHHHHHhhccC-CCChhhhhcccCchhhhh--hHhhhhhhhh----------------
Q psy494 1 MGSQWNGMGTDLL-RIPLFRQSMERLDAVLKPH-GVDLFHILTSTDNTLFDN--ILNSFVGIAA---------------- 60 (207)
Q Consensus 1 ~GsQ~~gMg~~L~-~~~~fr~~~~~~~~~l~~~-g~~l~~~l~~~~~~~~~~--~~q~~l~~~~---------------- 60 (207)
.||||.|||++|| .+|+|+.++++|+..+.++ |+++.+.+.......+.. ..|+.+ +++
T Consensus 534 qgsq~~~mg~el~~~~p~f~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~~~~~Qp~l-fai~~ala~l~~s~gv~p~ 612 (1061)
T COG3321 534 QGSQWAGMGRELYALEPVFASAFDALEALLHRLLGFSLPEVIFAPDYPFLESIDFAQPAL-FAVSVALAALWRSWGVIPG 612 (1061)
T ss_pred hHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHcCCcccceecCCCCccccCcchhhhHH-HHHHHHHHHHHHhcCCcCc
Confidence 4899999999999 9999999999999999999 999999988765322222 366666 433
Q ss_pred --------------------------------------------------------------------------------
Q psy494 61 -------------------------------------------------------------------------------- 60 (207)
Q Consensus 61 -------------------------------------------------------------------------------- 60 (207)
T Consensus 613 ~viGhS~gE~aaA~~aGv~s~~d~~~~v~~Rg~lm~~~~~~G~m~~v~~~~~~~~~~~~~~~~~~v~ia~~n~P~~~vi~ 692 (1061)
T COG3321 613 AVIGHSLGELAAAVAAGVLSLEDALRVVATRGRLMQQLAGEGAMLAVELSLLAEVQELLALGRPQVPLAAVNSPQQVVIA 692 (1061)
T ss_pred cccCcCHHHHHHHHHhccCChhhhhHhhhhcchhhccCCCCcchhhhhcCccchhhHHhhccccceeEEEecCCceEEec
Confidence
Q ss_pred ------------------------------------------------cccCCCCceecccccCCCCCCCCCCCChHHHH
Q psy494 61 ------------------------------------------------CQPRSSKWISSSILEDAWGSPLAQTSSAEYHT 92 (207)
Q Consensus 61 ------------------------------------------------c~~~~~~~~~s~vt~~~~~~~~~~~~~~~y~~ 92 (207)
....+.++++|++++.... ....+++||.
T Consensus 693 g~~~~i~~l~~~~~~~~~~~~~~~v~~a~hs~~m~~~~~~~~~~la~i~~~~p~~p~~S~~~~~~~~---~~~~d~~yw~ 769 (1061)
T COG3321 693 GDPEAIAALIARLQAQGVRARRLAVSHAFHSPLMDPILDEFAAALADLAPRPPQIPLISNVTGDLAG---EPGGDAQYWV 769 (1061)
T ss_pred CCHHHHHHHHHHHhccCcccceeeeeeccccHHHHHHHHHHHHHHhhcccCCCCcceeeeeeccccC---CcccCHHHHH
Confidence 0345667799999999832 4467899999
Q ss_pred HhcccceeHHHHHhhccCC--cEEEEeCCchhHHHHHHHHhcccccccccccccCCcChHHHHHHHHHHHHHcCCCCCCc
Q psy494 93 NNLLSSVFFEEASAHIPAN--AICIEIAPHGLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLA 170 (207)
Q Consensus 93 ~~l~~pV~f~~~i~~l~~~--~~~lEiGp~~~L~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~l~~L~~~G~~vdw~ 170 (207)
+|+++||+|.+++..+... .+|+|+|||++|+..+++++... +..+.+++++. ++...+...+++||..|+++||.
T Consensus 770 ~~~r~~v~f~~~i~~~~~~~~~~f~E~~p~p~l~~~~~~~~~~~-~~~~~~~~r~~-~~~~~~~~~~~~l~~~g~~~dw~ 847 (1061)
T COG3321 770 QHLRQPVRFADAIAAALADGARTFIEVGPGPVLTESIKQTLRDA-ILSIATLRRDA-PELLSFLAALAQLFVAGVAVDWS 847 (1061)
T ss_pred HHHHhhccHHHHHHHHHhcccceEEEecCCHhHHHHHHHHhhhh-hcchhhhcccc-cchhHHHHHHHHHHhcCCCcCcH
Confidence 9999999999999999875 89999999999999999988555 77778888888 77799999999999999999999
Q ss_pred cCCCCCcCCCCCCCCCCCCcccCCCCCcccCcc
Q psy494 171 PLYPEVQYPVSRGTKPLGHFVDWEHGHEYKLSE 203 (207)
Q Consensus 171 ~~~~~~~~~~~~~~~~~lP~y~f~~~~~w~~~~ 203 (207)
.++...... .+.+|+|+|+|++||++.+
T Consensus 848 ~~~~~~~~~-----~v~lp~~~~q~~~~wl~~~ 875 (1061)
T COG3321 848 PLVYGPDGR-----LVELPTYPFQRQRFWLDPE 875 (1061)
T ss_pred hhhcCCccc-----cccCCCCCceecccccccc
Confidence 988663321 2347999999999999864
No 4
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=99.90 E-value=9.6e-24 Score=179.76 Aligned_cols=88 Identities=13% Similarity=0.246 Sum_probs=78.0
Q ss_pred ChHHHHHhcccceeHHHHHhhccCC--cEEEEeCCchhHHHHHHHHhcccc--------cccccccccCCcChHHHHHHH
Q psy494 87 SAEYHTNNLLSSVFFEEASAHIPAN--AICIEIAPHGLLQAILKRSLAEKE--------VVNIPLTLRGVKDGVKFILNS 156 (207)
Q Consensus 87 ~~~y~~~~l~~pV~f~~~i~~l~~~--~~~lEiGp~~~L~~~~~~~~~~~~--------~~~~~s~~~~~~~~~~~~~~~ 156 (207)
.++||++|+++||+|.++++.+.+. ++|||+||+++|++++++++.+.. ..++++++++. ++..+++++
T Consensus 441 ia~yw~~ql~~PVrF~~~I~~L~~~Gv~~FVEIGPg~vLs~lv~~~l~~~~~~~~~~~~~~~l~sl~r~~-~d~~~ll~a 519 (538)
T TIGR02816 441 IANSIADTFCQTLDFTALIHHAQEQGAKLFVEIGADRQNCTLIDKINKQDGASSEQHQPCCTVAANAKGG-EDITSLIKA 519 (538)
T ss_pred HHHHHHHcCCCccCHHHHHHHHHHCCCCEEEEeCCChHHHHHHHHHhhcccccccccccceEeccCCCCC-chHHHHHHH
Confidence 4689999999999999999999875 899999999999999999875321 35788888888 889999999
Q ss_pred HHHHHHcCCCCCCccCCCC
Q psy494 157 IGKLYLNGLDLNLAPLYPE 175 (207)
Q Consensus 157 l~~L~~~G~~vdw~~~~~~ 175 (207)
+++||++|++|||..+|++
T Consensus 520 LA~L~~~Gv~vdW~~l~~g 538 (538)
T TIGR02816 520 IAQLISHQIPLSLQPFIDG 538 (538)
T ss_pred HHHHHHCCCCCCchhcCCC
Confidence 9999999999999998753
No 5
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=99.89 E-value=7.5e-23 Score=198.02 Aligned_cols=111 Identities=20% Similarity=0.226 Sum_probs=89.5
Q ss_pred ccCCCCceecccccCCCCCCCCCCCChHHHHHhcccceeHHHHHhhccCC--cEEEEeCCchhHHHHHHHHhccc--ccc
Q psy494 62 QPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPAN--AICIEIAPHGLLQAILKRSLAEK--EVV 137 (207)
Q Consensus 62 ~~~~~~~~~s~vt~~~~~~~~~~~~~~~y~~~~l~~pV~f~~~i~~l~~~--~~~lEiGp~~~L~~~~~~~~~~~--~~~ 137 (207)
+..+.++++|++||..+.. ......+||++|+++||+|.++|+++.+. ++|||+||+++|++++++++.+. .+.
T Consensus 811 ~~~P~ipv~SnvtG~~~~~--~~~~i~~~~~~ql~~PV~F~~aIe~l~~~G~~~FVEiGPg~vLt~lv~~il~~~~~~~~ 888 (2582)
T TIGR02813 811 FNTPLVPLYSNGTGKLHSN--DAAAIKKALKNHMLQSVHFSEQLEAMYAAGARVFVEFGPKNILQKLVENTLKDKENELC 888 (2582)
T ss_pred CCCCCceEEECCCCeEecC--chhhHHHHHHHHhhCeecHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHHhhccCCCee
Confidence 4556688999999998753 11235799999999999999999999874 88999999999999999998653 233
Q ss_pred ccccc-ccCCcChHHHHHHHHHHHHHcCCCCCCccCCCC
Q psy494 138 NIPLT-LRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPE 175 (207)
Q Consensus 138 ~~~s~-~~~~~~~~~~~~~~l~~L~~~G~~vdw~~~~~~ 175 (207)
.++.. .++. ++...+++++++||+.|+++||...+..
T Consensus 889 ~v~~~~~~~~-~~~~~l~~a~~~L~~~G~~v~~~~~~~~ 926 (2582)
T TIGR02813 889 AISINPNPKG-DSDMQLRQAAVQLAVLGLELTEIDPYQA 926 (2582)
T ss_pred EEeeccCCCC-CHHHHHHHHHHHHHHCCCCCCCcccccc
Confidence 45544 3344 7788999999999999999998887744
No 6
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=99.81 E-value=3.4e-19 Score=143.81 Aligned_cols=130 Identities=28% Similarity=0.490 Sum_probs=106.7
Q ss_pred CCCchhhHHHHhh-ccHHHHHHHHHHHHhhccC-CCChhhhhcccCc--hhhhhh--Hhhhhhhhh--------------
Q psy494 1 MGSQWNGMGTDLL-RIPLFRQSMERLDAVLKPH-GVDLFHILTSTDN--TLFDNI--LNSFVGIAA-------------- 60 (207)
Q Consensus 1 ~GsQ~~gMg~~L~-~~~~fr~~~~~~~~~l~~~-g~~l~~~l~~~~~--~~~~~~--~q~~l~~~~-------------- 60 (207)
+|+||+|||++|| .+|.||+.+++|+++++.+ |+++.+.+..++. ..++++ .|+++ ++.
T Consensus 4 QG~q~~~m~~~l~~~~~~~~~~~~~~~~~l~~~~g~~~~~~l~~~~~~~~~l~~~~~~q~~i-~~~~~a~~~~l~~~Gi~ 82 (298)
T smart00827 4 QGSQWPGMGRELYETEPVFRAALDECDAALQPLLGWSLLDVLFGEDGAASLLRRTEVAQPAL-FAVQVALARLWRSWGVR 82 (298)
T ss_pred CchhHHHHHHHHHHcCHHHHHHHHHHHHHHHHhcCCCHHHHHcCCCCchhhhcccchhHHHH-HHHHHHHHHHHHHcCCc
Confidence 5999999999999 9999999999999999998 9999999976543 235554 67766 433
Q ss_pred ----------------------------------------------------------------------c---------
Q psy494 61 ----------------------------------------------------------------------C--------- 61 (207)
Q Consensus 61 ----------------------------------------------------------------------c--------- 61 (207)
|
T Consensus 83 p~~~~GhSlGE~aA~~~ag~~~~~~~l~l~~~r~~~~~~~~~~g~m~av~~~~~~~~~~l~~~~~~~~ia~~ns~~~~vi 162 (298)
T smart00827 83 PDAVVGHSLGEIAAAYVAGVLSLEDAARLVAARGRLMQALPGGGAMLAVGLSEEEVEELLAGYGGRVSVAAVNGPSSVVL 162 (298)
T ss_pred ccEEEecCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhcCCCCeEEEEeCCHHHHHHHHHhcCCcEEEEEEcCCCCEEE
Confidence 0
Q ss_pred --------------------------------------------------ccCCCCceecccccCCCCCCCCCCCChHHH
Q psy494 62 --------------------------------------------------QPRSSKWISSSILEDAWGSPLAQTSSAEYH 91 (207)
Q Consensus 62 --------------------------------------------------~~~~~~~~~s~vt~~~~~~~~~~~~~~~y~ 91 (207)
..++.+++.|+++|..+... ...+++||
T Consensus 163 sG~~~~l~~l~~~l~~~~~~~~~L~v~~~fHs~~~~~~~~~~~~~l~~~~~~~~~~pv~S~~~g~~~~~~--~~~~~~~l 240 (298)
T smart00827 163 SGDEDAVDELAAALEARGIRARRLKVDHAFHSPHMDPILDEFREALAGITPRPPRIPFVSTVTGELIDGA--ELDDAEYW 240 (298)
T ss_pred ECCHHHHHHHHHHHHHCCceEEECCCCCCCchHHHHHHHHHHHHHHhhCCCCCCCCcEEeCCCCcccCCC--CCCCHHHH
Confidence 33455678889998887653 23458999
Q ss_pred HHhcccceeHHHHHhhccC---CcEEEEeCCchhHHHHHHHHhcc
Q psy494 92 TNNLLSSVFFEEASAHIPA---NAICIEIAPHGLLQAILKRSLAE 133 (207)
Q Consensus 92 ~~~l~~pV~f~~~i~~l~~---~~~~lEiGp~~~L~~~~~~~~~~ 133 (207)
.+|+++||+|.++++.+.+ ..+|||+||+++|+++++++++.
T Consensus 241 ~~~l~~pV~~~~~i~~l~~~~g~~~~ie~Gp~~~l~~~~~~~~~~ 285 (298)
T smart00827 241 VRNLREPVRFADAVRALLAEQGVTVFLEVGPHPVLTGPIKQTLPA 285 (298)
T ss_pred HHHhhccEeHHHHHHHHHHcCCCcEEEEeCCcHHHHHHHHHHHhc
Confidence 9999999999999999984 37899999999999999998754
No 7
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=99.77 E-value=2.1e-18 Score=138.67 Aligned_cols=64 Identities=17% Similarity=0.221 Sum_probs=51.5
Q ss_pred CCCceecccccCCCCCCCCCCCChHHHHHhcccceeHHHHHhhccCC--cEEEEeCCchhHHHHHHHHh
Q psy494 65 SSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPAN--AICIEIAPHGLLQAILKRSL 131 (207)
Q Consensus 65 ~~~~~~s~vt~~~~~~~~~~~~~~~y~~~~l~~pV~f~~~i~~l~~~--~~~lEiGp~~~L~~~~~~~~ 131 (207)
+.++++|+++|..+... ....+||.+|++.||+|.++++.+.+. .+|||+||+++|+++++++.
T Consensus 222 p~ipi~S~~~g~~~~~~---~~~~~~~~~~l~~pV~f~~~i~~l~~~g~~~~ie~gp~~~l~~~~~~~~ 287 (290)
T TIGR00128 222 PTVPVISNVDAKPYTNG---DRIKEKLSEQLTSPVRWTDSVEKLMARGVTEFAEVGPGKVLTGLIKRIK 287 (290)
T ss_pred CCccEEECCCCCccCCH---HHHHHHHHHHccCCccHHHHHHHHHHCCCCEEEEECCchHHHHHHHHhc
Confidence 34556667777655432 125789999999999999999999764 88999999999999999875
No 8
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=99.75 E-value=3.2e-18 Score=137.31 Aligned_cols=132 Identities=22% Similarity=0.243 Sum_probs=110.9
Q ss_pred CCCchhhHHHHhh-ccHHHHHHHHHHHHhhccCCCChhhhhcccCchhhhhh--Hhhhhhhhh-----------------
Q psy494 1 MGSQWNGMGTDLL-RIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNI--LNSFVGIAA----------------- 60 (207)
Q Consensus 1 ~GsQ~~gMg~~L~-~~~~fr~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~--~q~~l~~~~----------------- 60 (207)
+||||.|||++|| +++.+++.++++++.+ |+|+.++++++..+.++.| +||++....
T Consensus 11 QGsQ~~gMg~~l~~~~~~a~~~~~~a~~~l---~~~l~~i~~~~p~~~L~~T~~tQPal~~~s~a~~~~l~~~~~~~~p~ 87 (310)
T COG0331 11 QGSQSLGMGKDLYENSPEAKETFDEADEAL---GFDLWALVFEGPEEELNLTQNTQPALLLVSLAAYRVLAEQGLGVKPD 87 (310)
T ss_pred chHHHHHhHHHHHhccHHHHHHHHHHHHHh---cccHHHHhcCCCHHHhcccchhhHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 5999999999999 9999999999999999 8999999998777777777 999983322
Q ss_pred --------------------------------------------------------------------------------
Q psy494 61 -------------------------------------------------------------------------------- 60 (207)
Q Consensus 61 -------------------------------------------------------------------------------- 60 (207)
T Consensus 88 ~~aGHSlGEysAl~~ag~~~~ed~~~Lv~~RG~~M~~a~p~~~g~Maav~gl~~e~v~~~~~~~~~~~~v~iaN~N~~~Q 167 (310)
T COG0331 88 FVAGHSLGEYSALAAAGVLSFEDALKLVRKRGKLMQEAVPRGEGGMAAVLGLDDEQVEKACEEAAQGTVVEIANYNSPGQ 167 (310)
T ss_pred eeecccHhHHHHHHHcccccHHHHHHHHHHHHHHHHHHccCCCccHHHHcCCCHHHHHHHHHHhccCCeEEEeeeCCCCc
Confidence
Q ss_pred -----------------------------------------------------cccCCCCceecccccCCCCCCCCCCCC
Q psy494 61 -----------------------------------------------------CQPRSSKWISSSILEDAWGSPLAQTSS 87 (207)
Q Consensus 61 -----------------------------------------------------c~~~~~~~~~s~vt~~~~~~~~~~~~~ 87 (207)
++..+.+++.+++++....++. ..
T Consensus 168 iVIsG~~~ale~a~~~~~~~g~kr~i~l~vs~pfHs~lm~pa~~~~~~~l~~~~~~~~~ipvi~n~~~~~~~~~~---~i 244 (310)
T COG0331 168 IVISGTKEALEKAAEILKEAGAKRAIPLPVSGPFHSPLMKPAADELAEALEKVRFSDPLVPVISNVDAKPVLDGE---EI 244 (310)
T ss_pred EEEECCHHHHHHHHHHHHHhhhhhhcccCCCchhhhhhhHHHHHHHHHHHHhcCCCCccceeeeccccccccCHH---HH
Confidence 0567778899999888754433 36
Q ss_pred hHHHHHhcccceeHHHHHhhccCC--cEEEEeCCchhHHHHHHHHhccccccc
Q psy494 88 AEYHTNNLLSSVFFEEASAHIPAN--AICIEIAPHGLLQAILKRSLAEKEVVN 138 (207)
Q Consensus 88 ~~y~~~~l~~pV~f~~~i~~l~~~--~~~lEiGp~~~L~~~~~~~~~~~~~~~ 138 (207)
.+.+.+|+.+||+|.++++.+.+. +.|+|+||+++|++++|++..+.....
T Consensus 245 ~~~L~~q~~~pVrW~etv~~l~~~gv~~~~EiGpg~vL~gL~kri~~~~~~~~ 297 (310)
T COG0331 245 RELLAKQLTSPVRWTETVETLKADGVTRFVEIGPGKVLTGLAKRILKGLGVRA 297 (310)
T ss_pred HHHHHHHhcCCeeHHHHHHHHHhcCceEEEEeCCcHHHHHHHHhhcCCCCcee
Confidence 788999999999999999999884 889999999999999999875544433
No 9
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=99.74 E-value=1e-17 Score=137.71 Aligned_cols=67 Identities=15% Similarity=0.183 Sum_probs=55.5
Q ss_pred cCCCCceecccccCCCCCCCCCCCChHHHHHhcccceeHHHHHhhccCC--cEEEEeCCchhHHHHHHHHhc
Q psy494 63 PRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPAN--AICIEIAPHGLLQAILKRSLA 132 (207)
Q Consensus 63 ~~~~~~~~s~vt~~~~~~~~~~~~~~~y~~~~l~~pV~f~~~i~~l~~~--~~~lEiGp~~~L~~~~~~~~~ 132 (207)
.++.++++|+++|..+.++. ...+||.+|+++||+|.++++.+.+. +.|||+||+++|+++++++.+
T Consensus 266 ~~p~ipviS~~tg~~~~~~~---~~~~~l~~~l~~PV~~~~~i~~l~~~g~~~~iEiGP~~~L~~l~~~~~~ 334 (343)
T PLN02752 266 RTPRIPVISNVDAQPHSDPA---TIKKILARQVTSPVQWETTVKTLLEKGLEKSYELGPGKVIAGIVKRVDK 334 (343)
T ss_pred CCCCceEEEcCCCCccCChH---HHHHHHHHHCcCCEEHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHhhC
Confidence 34456778888888775532 36799999999999999999999875 789999999999999998753
No 10
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=99.72 E-value=2.1e-17 Score=133.25 Aligned_cols=67 Identities=12% Similarity=0.114 Sum_probs=54.8
Q ss_pred CCCCceecccccCCCCCCCCCCCChHHHHHhcccceeHHHHHhhccCC--cEEEEeCCchhHHHHHHHHhcc
Q psy494 64 RSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPAN--AICIEIAPHGLLQAILKRSLAE 133 (207)
Q Consensus 64 ~~~~~~~s~vt~~~~~~~~~~~~~~~y~~~~l~~pV~f~~~i~~l~~~--~~~lEiGp~~~L~~~~~~~~~~ 133 (207)
.+.++++|+++|..+..+. ...+||.+|+++||+|.++++.+.+. ++|||+||+++|+++++++.++
T Consensus 210 ~~~ip~~S~~~g~~~~~~~---~~~~~~~~~l~~pV~~~~~i~~l~~~g~~~~veiGp~~~l~~~~~~~~~~ 278 (295)
T TIGR03131 210 APRLPYLSGIDARLVRDAA---QIRDDLARQIATPVDWHDCMQAAYERGARLVIELGPGDVLTKLANEAFPE 278 (295)
T ss_pred CCCceEEECCCCeecCCHH---HHHHHHHHHhcCCCcHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHhcCC
Confidence 3446677778777664432 25799999999999999999999864 8899999999999999988644
No 11
>KOG2926|consensus
Probab=99.61 E-value=1.1e-15 Score=120.77 Aligned_cols=124 Identities=24% Similarity=0.315 Sum_probs=108.6
Q ss_pred CCCchhhHHHHhhccHHHHHHHHHHHHhhccCCCChhhhhcccCchhhhhh--Hhhhhhhhh------------------
Q psy494 1 MGSQWNGMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNI--LNSFVGIAA------------------ 60 (207)
Q Consensus 1 ~GsQ~~gMg~~L~~~~~fr~~~~~~~~~l~~~g~~l~~~l~~~~~~~~~~~--~q~~l~~~~------------------ 60 (207)
.|+||.|||+.++.+|..|+.+++|+++| |+|+++++.++..+.+++| .||++ ++.
T Consensus 71 QG~q~vgm~q~~l~~p~a~~~~~~A~~vl---~YdLlki~~~gP~e~ldrT~~~QpAI-~~~SlAa~E~l~~~~p~~ie~ 146 (386)
T KOG2926|consen 71 QGAQSVGMGQYLLQNPAARRLFAEASNVL---GYDLLKICVNGPKEKLDRTVIAQPAI-DVSSLAALEQLRLLGPSIIEN 146 (386)
T ss_pred CChhhhhhhHHHHhCcchhHHHHHHHHHh---hHHHHHHHhcCccchhhcccccccce-ecccHHHHHhccccCcchhhe
Confidence 49999999999999999999999999999 9999999999888888888 88887 433
Q ss_pred -----------------------------------------------------------------------------c--
Q psy494 61 -----------------------------------------------------------------------------C-- 61 (207)
Q Consensus 61 -----------------------------------------------------------------------------c-- 61 (207)
|
T Consensus 147 ~~~~aGfSlGEy~alvfa~aLsFs~alKlVk~Ra~AMs~a~~~~~~~m~~~~~~p~sk~~~~~~~a~~~~~~qe~~~~~V 226 (386)
T KOG2926|consen 147 LVVTAGFSLGEYAALVFAGALSFSSALKLVKARAEAMSEASELVASGMVMILGLPTSKVQKACASANQLSASQEYPVCEV 226 (386)
T ss_pred eeeeccccHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHhhcccceeecCcHhHHHHHHhhhHHHhhhccCCeeee
Confidence 0
Q ss_pred --------------------------------------------------------------ccCCCCceecccccCCCC
Q psy494 62 --------------------------------------------------------------QPRSSKWISSSILEDAWG 79 (207)
Q Consensus 62 --------------------------------------------------------------~~~~~~~~~s~vt~~~~~ 79 (207)
...+.+++.|||+|..+.
T Consensus 227 ANyl~~~~~VvsG~~~~Le~lee~~~sf~~~r~~~LaVsgAFHTr~MepAvepl~~Al~~vei~~p~~pViSNvdg~~~~ 306 (386)
T KOG2926|consen 227 ANYLSPGQRVVSGLVKALESLEENAKSFKIRRMKRLAVSGAFHTRLMEPAVEPLTKALKAVEIKNPVIPVISNVDGKPYR 306 (386)
T ss_pred eccCCCCcEEeeCcHHHHHHHHHHHHhhhhhhheeeeeccccchhhhhhhHHHHHHHHHHHHhcCCCcceeecCCCcccC
Confidence 566678899999999887
Q ss_pred CCCCCCCChHHHHHhcccceeHHHHHhhccCC-----cEEEEeCCchhHHHHHHHHh
Q psy494 80 SPLAQTSSAEYHTNNLLSSVFFEEASAHIPAN-----AICIEIAPHGLLQAILKRSL 131 (207)
Q Consensus 80 ~~~~~~~~~~y~~~~l~~pV~f~~~i~~l~~~-----~~~lEiGp~~~L~~~~~~~~ 131 (207)
.+.. ..+-+++|+.+||+|.++++++.+. ..++|+|||.++.+++++..
T Consensus 307 ~~~h---i~~~l~kQ~~rPV~we~~~~ti~sk~~~g~~~sye~GPG~~l~~ilk~~~ 360 (386)
T KOG2926|consen 307 DPGH---ILKQLAKQIVRPVQWEQTLKTIYSKQGVGFPRSYEVGPGRVLVAILKRNN 360 (386)
T ss_pred ChHH---HHHHHHHHhcCchhHHHHHHHHHhcCCCCCCceEeeCCcHHHHHHHHHhC
Confidence 6444 6678899999999999999999764 67999999999999999864
No 12
>PF13556 HTH_30: PucR C-terminal helix-turn-helix domain; PDB: 3ONQ_B.
Probab=54.17 E-value=19 Score=21.31 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=25.2
Q ss_pred CCchhhHHHHhh-ccHHHHHHHHHHHHhhccCCCChhh
Q psy494 2 GSQWNGMGTDLL-RIPLFRQSMERLDAVLKPHGVDLFH 38 (207)
Q Consensus 2 GsQ~~gMg~~L~-~~~~fr~~~~~~~~~l~~~g~~l~~ 38 (207)
|......++.|+ +--.++..++++.+++ |.|+.+
T Consensus 12 ~~n~~~tA~~L~iHrNTl~yRl~ki~~l~---g~dl~~ 46 (59)
T PF13556_consen 12 NGNISKTARALHIHRNTLRYRLKKIEELL---GLDLDD 46 (59)
T ss_dssp TT-HHHHHHHHTS-HHHHHHHHHHHHHHH---S--TTS
T ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHH---CcCCCC
Confidence 345567889999 9889999999999999 777654
No 13
>PLN03219 uncharacterized protein; Provisional
Probab=42.88 E-value=28 Score=23.66 Aligned_cols=19 Identities=32% Similarity=0.595 Sum_probs=17.3
Q ss_pred ccHHHHHHHHHHHHhhccCCCC
Q psy494 14 RIPLFRQSMERLDAVLKPHGVD 35 (207)
Q Consensus 14 ~~~~fr~~~~~~~~~l~~~g~~ 35 (207)
++|.|+..++++++.+ |++
T Consensus 65 ~hP~F~~LL~~AeEEf---Gf~ 83 (108)
T PLN03219 65 NHPLFREFLNRAEEEC---GFH 83 (108)
T ss_pred CChHHHHHHHHHHHHh---CCC
Confidence 8899999999999999 775
No 14
>PLN03220 uncharacterized protein; Provisional
Probab=42.14 E-value=30 Score=23.39 Aligned_cols=19 Identities=21% Similarity=0.534 Sum_probs=17.5
Q ss_pred ccHHHHHHHHHHHHhhccCCCC
Q psy494 14 RIPLFRQSMERLDAVLKPHGVD 35 (207)
Q Consensus 14 ~~~~fr~~~~~~~~~l~~~g~~ 35 (207)
++|.|++.++++++-+ |++
T Consensus 63 ~hP~F~~LL~~AeEEf---Gf~ 81 (105)
T PLN03220 63 NHPSFKEFLSRAEEEF---GFN 81 (105)
T ss_pred CChHHHHHHHHHHHHh---CCC
Confidence 8899999999999999 775
No 15
>PLN03090 auxin-responsive family protein; Provisional
Probab=41.40 E-value=31 Score=23.36 Aligned_cols=19 Identities=21% Similarity=0.492 Sum_probs=17.1
Q ss_pred ccHHHHHHHHHHHHhhccCCCC
Q psy494 14 RIPLFRQSMERLDAVLKPHGVD 35 (207)
Q Consensus 14 ~~~~fr~~~~~~~~~l~~~g~~ 35 (207)
++|.|++.++++++-+ |++
T Consensus 64 ~hP~F~~LL~~aeeEf---Gf~ 82 (104)
T PLN03090 64 THPEFQSLLQQAEEEF---GFD 82 (104)
T ss_pred CCHHHHHHHHHHHHHh---CCC
Confidence 8999999999999988 665
No 16
>PF09863 DUF2090: Uncharacterized protein conserved in bacteria (DUF2090); InterPro: IPR018659 This domain, found in various prokaryotic carbohydrate kinases, has no known function.
Probab=38.93 E-value=45 Score=27.18 Aligned_cols=27 Identities=19% Similarity=0.194 Sum_probs=23.7
Q ss_pred ChHHHHHHHHHHHHHcCCCCCCccCCC
Q psy494 148 DGVKFILNSIGKLYLNGLDLNLAPLYP 174 (207)
Q Consensus 148 ~~~~~~~~~l~~L~~~G~~vdw~~~~~ 174 (207)
.+..++.+++..+|..|+..||.++-+
T Consensus 191 ~~~~~~~~ai~r~Y~lGI~PDWWKLep 217 (311)
T PF09863_consen 191 VDDDTYARAIERFYNLGIKPDWWKLEP 217 (311)
T ss_pred CChHHHHHHHHHHHHcCCCCCeeccCC
Confidence 446889999999999999999999854
No 17
>COG3892 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.57 E-value=52 Score=26.17 Aligned_cols=28 Identities=18% Similarity=0.202 Sum_probs=24.8
Q ss_pred ChHHHHHHHHHHHHHcCCCCCCccCCCC
Q psy494 148 DGVKFILNSIGKLYLNGLDLNLAPLYPE 175 (207)
Q Consensus 148 ~~~~~~~~~l~~L~~~G~~vdw~~~~~~ 175 (207)
.+..+..+++.++|..|+..||..+-|-
T Consensus 182 ~dd~t~~Raier~Y~lGv~PDWWKLePl 209 (310)
T COG3892 182 SDDRTVPRAIERFYNLGVYPDWWKLEPL 209 (310)
T ss_pred cchhHHHHHHHHHHHcCCCcccccCCCC
Confidence 5567899999999999999999998664
No 18
>COG3036 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.83 E-value=61 Score=19.65 Aligned_cols=25 Identities=32% Similarity=0.431 Sum_probs=18.6
Q ss_pred CCchhhHHHHhhccHHHHHHHHHHH
Q psy494 2 GSQWNGMGTDLLRIPLFRQSMERLD 26 (207)
Q Consensus 2 GsQ~~gMg~~L~~~~~fr~~~~~~~ 26 (207)
|+-.+.-.+.|.+.|.||..++...
T Consensus 10 g~ikdNalkALv~~pLFR~RvEk~k 34 (66)
T COG3036 10 GVIKDNALKALVHDPLFRQRVEKKK 34 (66)
T ss_pred cccchhHHHHHHcCHHHHHHHHHhh
Confidence 3445566777889999999988654
No 19
>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []. Proteins from this ARG7 auxin responsive genes family have no identified functional role [].
Probab=30.87 E-value=47 Score=22.22 Aligned_cols=20 Identities=30% Similarity=0.619 Sum_probs=17.3
Q ss_pred ccHHHHHHHHHHHHhhccCCCCh
Q psy494 14 RIPLFRQSMERLDAVLKPHGVDL 36 (207)
Q Consensus 14 ~~~~fr~~~~~~~~~l~~~g~~l 36 (207)
++|.|+..++++++-+ |++-
T Consensus 60 ~hp~f~~LL~~aeeEf---G~~~ 79 (100)
T PF02519_consen 60 NHPLFQELLEQAEEEF---GFDQ 79 (100)
T ss_pred CchhHHHHHHHHhhhc---CcCC
Confidence 8999999999999987 6653
No 20
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=29.12 E-value=47 Score=26.44 Aligned_cols=19 Identities=26% Similarity=0.221 Sum_probs=13.4
Q ss_pred CcEEEEeCCch-hHHHHHHH
Q psy494 111 NAICIEIAPHG-LLQAILKR 129 (207)
Q Consensus 111 ~~~~lEiGp~~-~L~~~~~~ 129 (207)
.+..||||||. .|+..+-+
T Consensus 31 ~d~VlEIGpG~GaLT~~Ll~ 50 (259)
T COG0030 31 GDNVLEIGPGLGALTEPLLE 50 (259)
T ss_pred CCeEEEECCCCCHHHHHHHh
Confidence 48999999995 45554433
No 21
>PF02416 MttA_Hcf106: mttA/Hcf106 family; InterPro: IPR003369 Members of this protein family are involved in a sec-independent translocation mechanism. This pathway has been called the DeltapH pathway in chloroplasts []. Members of this family in Escherichia coli are involved in export of redox proteins with a "twin arginine" leader motif (S/T-R-R-X-F-L-K) []. This sec-independent pathway is termed TAT for twin-arginine translocation system. This system mainly transports proteins with bound cofactors that require folding prior to export.; GO: 0008565 protein transporter activity, 0015031 protein transport; PDB: 2L16_A.
Probab=27.62 E-value=78 Score=18.39 Aligned_cols=27 Identities=11% Similarity=0.242 Sum_probs=20.1
Q ss_pred chhhHHHHhh-ccHHHHHHHHHHHHhhc
Q psy494 4 QWNGMGTDLL-RIPLFRQSMERLDAVLK 30 (207)
Q Consensus 4 Q~~gMg~~L~-~~~~fr~~~~~~~~~l~ 30 (207)
--|++++.+= ....||+.+++.++-.+
T Consensus 21 kLP~~~r~lG~~ir~fk~~~~~~~~~~~ 48 (53)
T PF02416_consen 21 KLPELARSLGKAIREFKKAINEAKEEIE 48 (53)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 4588899988 88889999888877653
No 22
>PF08837 DUF1810: Protein of unknown function (DUF1810); InterPro: IPR014937 This is a family of uncharacterised proteins. The structure of one of the members in this family has been solved and it adopts a mainly alpha helical structure. ; PDB: 2JEK_A.
Probab=22.44 E-value=52 Score=23.50 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHHHHhhccC-CCChhhhhcc
Q psy494 14 RIPLFRQSMERLDAVLKPH-GVDLFHILTS 42 (207)
Q Consensus 14 ~~~~fr~~~~~~~~~l~~~-g~~l~~~l~~ 42 (207)
.+|+....+.+|.+++..+ |.++.+++-.
T Consensus 66 ~HpvLG~RL~e~~~~ll~~~~~s~~~IfG~ 95 (139)
T PF08837_consen 66 AHPVLGPRLRECTEALLALEGRSAEEIFGS 95 (139)
T ss_dssp HSTTHHHHHHHHHHHHHH--S--HHHHS-T
T ss_pred cCHHHHHHHHHHHHHHHhcCCCCHHHHCCC
Confidence 8999999999999999998 9998888743
No 23
>TIGR01411 tatAE twin arginine-targeting protein translocase, TatA/E family. This model distinguishes TatA/E from the related TatB, but does not distinguish TatA from TatE. The Tat (twin-arginine translocation) system is a Sec-independent exporter for folded proteins, often with a redox cofactor already bound, across the bacterial inner membrane. Functionally equivalent systems are found in the chloroplast and some in archaeal species. The signal peptide recognized by the Tat system is modeled by TIGR01409.
Probab=21.25 E-value=61 Score=18.37 Aligned_cols=21 Identities=24% Similarity=0.398 Sum_probs=14.9
Q ss_pred hhhHHHHhh-ccHHHHHHHHHH
Q psy494 5 WNGMGTDLL-RIPLFRQSMERL 25 (207)
Q Consensus 5 ~~gMg~~L~-~~~~fr~~~~~~ 25 (207)
-|.++++|= .-..||+.+...
T Consensus 23 LP~~~r~lG~~i~~fk~~~~~~ 44 (47)
T TIGR01411 23 LPELGRDLGKAIKEFKKALKEE 44 (47)
T ss_pred hHHHHHHHHHHHHHHHHHhhcc
Confidence 477888887 777777776543
No 24
>KOG0064|consensus
Probab=20.60 E-value=64 Score=28.81 Aligned_cols=36 Identities=14% Similarity=0.243 Sum_probs=28.6
Q ss_pred CchhhHHHHhhccHHHHHHHHHHHHhhccCCCChhhhhcc
Q psy494 3 SQWNGMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHILTS 42 (207)
Q Consensus 3 sQ~~gMg~~L~~~~~fr~~~~~~~~~l~~~g~~l~~~l~~ 42 (207)
-|..||+|-+|+-|.|. .+|+|..+. ..|+...+++
T Consensus 618 kQR~~mARm~yHrPkya-lLDEcTsAv---sidvE~~i~~ 653 (728)
T KOG0064|consen 618 KQRMGMARMFYHRPKYA-LLDECTSAV---SIDVEGKIFQ 653 (728)
T ss_pred HHHHHHHHHHhcCcchh-hhhhhhccc---ccchHHHHHH
Confidence 48899999999888885 489999998 5676666654
No 25
>KOG0820|consensus
Probab=20.05 E-value=86 Score=25.39 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=10.0
Q ss_pred cEEEEeCCchh
Q psy494 112 AICIEIAPHGL 122 (207)
Q Consensus 112 ~~~lEiGp~~~ 122 (207)
++++|||||+.
T Consensus 60 D~VLEvGPGTG 70 (315)
T KOG0820|consen 60 DVVLEVGPGTG 70 (315)
T ss_pred CEEEEeCCCCC
Confidence 99999999975
Done!