RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy494
(207 letters)
>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty
acid synthesis, acetylation, cytoplasm, fatty acid
biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB:
2jfk_A* 2jfd_A
Length = 965
Score = 139 bits (352), Expect = 3e-38
Identities = 65/150 (43%), Positives = 95/150 (63%), Gaps = 2/150 (1%)
Query: 49 DNILNSFVGIAAC-QPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAH 107
+L + +PRS++W+S+SI E W S LA+TSSAEY+ NNL+S V F+EA H
Sbjct: 694 PPLLQELKKVIREPKPRSARWLSTSIPEAQWHSSLARTSSAEYNVNNLVSPVLFQEALWH 753
Query: 108 IPANAICIEIAPHGLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDL 167
+P +A+ +EIAPH LLQA+LKR L IPL + +D ++F L IG+L+L+G+D
Sbjct: 754 VPEHAVVLEIAPHALLQAVLKRGLKP-SCTIIPLMKKDHRDNLEFFLAGIGRLHLSGIDA 812
Query: 168 NLAPLYPEVQYPVSRGTKPLGHFVDWEHGH 197
N L+P V++P RGT + + W+H
Sbjct: 813 NPNALFPPVEFPAPRGTPLISPLIKWDHSL 842
Score = 83.0 bits (206), Expect = 7e-19
Identities = 29/62 (46%), Positives = 42/62 (67%)
Query: 1 MGSQWNGMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAA 60
MG+QW GMG L+R+ FR S+ R D +KP G+ + +L STD + FD+I++SFV + A
Sbjct: 501 MGTQWRGMGLSLMRLDRFRDSILRSDEAVKPFGLKVSQLLLSTDESTFDDIVHSFVSLTA 560
Query: 61 CQ 62
Q
Sbjct: 561 IQ 562
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 135 bits (342), Expect = 4e-37
Identities = 62/136 (45%), Positives = 91/136 (66%), Gaps = 1/136 (0%)
Query: 62 QPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHG 121
+PRS +W+S+SI E W LA+T SAEY NNL+S V F+EA H+PA+A+ +EIAPH
Sbjct: 706 KPRSKRWLSTSIPEAQWQGSLARTFSAEYSVNNLVSPVLFQEALQHVPAHAVVVEIAPHA 765
Query: 122 LLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYPEVQYPVS 181
LLQA+LKRSL IPL + +D ++F L+++G+L+L G+ +N L+P V++P
Sbjct: 766 LLQAVLKRSLES-SCTIIPLMKKDHRDNLEFFLSNVGRLHLAGVSVNPNGLFPPVEFPAP 824
Query: 182 RGTKPLGHFVDWEHGH 197
RGT + + W+H
Sbjct: 825 RGTPLISPHIKWDHSQ 840
Score = 81.5 bits (201), Expect = 3e-18
Identities = 28/62 (45%), Positives = 41/62 (66%)
Query: 1 MGSQWNGMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAA 60
MG+QW GMG L+R+ FR S+ R D LKP G+ + +L STD + D+I++SFV + +
Sbjct: 499 MGAQWQGMGLSLMRLDRFRDSILRSDQALKPLGLRVSDLLLSTDEAVLDDIVSSFVSLTS 558
Query: 61 CQ 62
Q
Sbjct: 559 IQ 560
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.6 bits (110), Expect = 3e-06
Identities = 33/163 (20%), Positives = 50/163 (30%), Gaps = 41/163 (25%)
Query: 2 GSQWNGMGTDLLR-IPLFRQSMERLDAVLKPH-GVDLFHILTSTDNTLFDNILNSFVGIA 59
GSQ GMG DL + + R D K G + I+ +N + I F G
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIV--INNPVNLTIH--FGGEK 1680
Query: 60 ACQPRSSKWISSSILEDAWGSPLAQTSSAEYHTN---NLLSSVFFEEASAHIPANAICIE 116
+ R S+ + T L + F+E + H +
Sbjct: 1681 GKRIR------------------ENYSAMIFETIVDGKLKTEKIFKEINEHS--TSYTFR 1720
Query: 117 IAPHGLL------Q-AILKRSLAEKEVVNIPLTLRGVKDGVKF 152
+ GLL Q A+ A E L +G+
Sbjct: 1721 -SEKGLLSATQFTQPALTLMEKAAFED----LKSKGLIPADAT 1758
Score = 39.3 bits (91), Expect = 6e-04
Identities = 33/180 (18%), Positives = 64/180 (35%), Gaps = 44/180 (24%)
Query: 16 PLFRQSMERLDAVLK---------PHGVDLFHILTSTDNTLFDNILN----SFVGIAACQ 62
L + S E L +++ G+++ L + NT + L S I Q
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQ 245
Query: 63 PRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVF---------FEEASAHIPANAI 113
+ +++ +L G + A H+ L+++V F + AI
Sbjct: 246 -LAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSV----RKAI 300
Query: 114 ---------CIEIAPH-GLLQAILKRSLAEKEVVNIP---LTLRGVKDGVKFILNSIGKL 160
C E P+ L +IL+ SL E +P L++ + + + + + K
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILEDSLENNE--GVPSPMLSISNLTQ--EQVQDYVNKT 356
>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase,
acyltransferase, phosphopantetheine, transfera; 2.59A
{Saccharopolyspora erythraea}
Length = 915
Score = 43.8 bits (104), Expect = 2e-05
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 2 GSQWNGMGTDLL-RIPLFRQSMERLDAVLKPH-GVDLFHILTSTD 44
GSQW GMG +LL P+F + D + P + +L
Sbjct: 542 GSQWAGMGAELLSSSPVFAGKIRACDESMAPMQDWKVSDVLRQAP 586
Score = 41.5 bits (98), Expect = 1e-04
Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 87 SAEYHTNNLLSSVFFEEASAHIPAN--AICIEIAPHGLL----QAILKRSLAEKEVVNIP 140
A Y NL +V F +A + + IE++PH ++ + ++ + ++ V +
Sbjct: 771 DARYWYRNLRETVRFADAVTRLAESGYDAFIEVSPHPVVVQAVEEAVEEADGAEDAVVVG 830
Query: 141 LTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYP 174
+L + L S+ +++G+D+ P
Sbjct: 831 -SLHRDGGDLSAFLRSMATAHVSGVDIRWDVALP 863
>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase,
acyltransferase, module 5, transferase; 2.73A
{Saccharopolyspora erythraea}
Length = 917
Score = 43.4 bits (103), Expect = 2e-05
Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 2 GSQWNGMGTDLL-RIPLFRQSMERLDAVLKPH 32
G+QW GM DLL +F S+ + L PH
Sbjct: 561 GAQWQGMARDLLRESQVFADSIRDCERALAPH 592
Score = 40.7 bits (96), Expect = 2e-04
Identities = 19/94 (20%), Positives = 42/94 (44%), Gaps = 6/94 (6%)
Query: 87 SAEYHTNNLLSSVFFEEASAHIPAN--AICIEIAPHGLLQAILKRSLAEKEVVNIPL--- 141
Y NL V F++A+ + +E++PH +L ++ +L +
Sbjct: 787 DTAYWYANLREQVRFQDATRQLAEAGFDAFVEVSPHPVLTVGIEATLDSALPADAGACVV 846
Query: 142 -TLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYP 174
TLR + G+ ++G+ Y G++++ +P +
Sbjct: 847 GTLRRDRGGLADFHTALGEAYAQGVEVDWSPAFA 880
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.7 bits (102), Expect = 2e-05
Identities = 39/262 (14%), Positives = 75/262 (28%), Gaps = 76/262 (29%)
Query: 11 DLLRIPLFRQSMERLDAVLKPHGVDLFHI-----LTSTDNTLFDNILNSFVGIAACQPRS 65
LL+ + + L V + F++ LT+ + D + + + S
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 66 ------------SKWISSSI----LEDAWGSPLAQTSSAE-------------YHTNNLL 96
K++ E +P + AE + + L
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL 355
Query: 97 SSVF---------------------FEEASAHIPANAICI------EIAPHGLLQAILKR 129
+++ F SAHIP + + + ++ + K
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPP-SAHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
Query: 130 SLAEKEVVNIPLTLRGVKDGVKFILNSIGKL-------Y--LNGLDLNLAPLYPEVQYPV 180
SL EK+ +++ + +K L + L Y D + QY
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFY 474
Query: 181 SRGTKPLG-HFVDWEHGHEYKL 201
S +G H + EH L
Sbjct: 475 SH----IGHHLKNIEHPERMTL 492
>2qc3_A MCT, malonyl COA-acyl carrier protein transacylase;
malonyl-COA:ACP transacylase, , nucleophili fatty acids
biosynthesis; 2.30A {Mycobacterium tuberculosis} PDB:
2qj3_A
Length = 303
Score = 39.8 bits (94), Expect = 3e-04
Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 11/53 (20%)
Query: 2 GSQWNGMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHI--------LTSTDNT 46
GSQ GM + L++P + +DL + +T T
Sbjct: 11 GSQTEGMLSPWLQLPGAADQIAAWSKAA---DLDLARLGTTASTEEITDTAVA 60
>1nm2_A Malonyl COA:acyl carrier protein malonyltransfera; alpha/beta
hydrolase-like core; 2.00A {Streptomyces coelicolor}
SCOP: c.19.1.1 d.58.23.1 PDB: 2cdh_4 2cf2_B
Length = 317
Score = 39.5 bits (93), Expect = 3e-04
Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 11/53 (20%)
Query: 2 GSQWNGMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHI--------LTSTDNT 46
G+Q G TD L +P + + G+DL H + T
Sbjct: 11 GAQTPGFLTDWLALPGAADRVAAWSDAI---GLDLAHFGTKADADEIRDTSVA 60
>4amm_A DYNE8; transferase; 1.40A {Micromonospora chersina} PDB: 4amn_A
4amp_A 4amo_A
Length = 401
Score = 39.6 bits (93), Expect = 4e-04
Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 7/96 (7%)
Query: 79 GSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHGLLQAILKRSLAEKEVVN 138
G+ A E L V F EA + A+ +E+ P +L A LAE
Sbjct: 311 GAWWADEDPVEVLVRQLTGPVRFREALGLLDADL-LVEVGPGRMLSA-----LAEAAGRT 364
Query: 139 IPLTLRGVKDGVKFILNSIGKLYLNGLDLNLAPLYP 174
+L + L+ G + P +
Sbjct: 365 AV-SLDAGAASAAGMAAGTAALFAAGAVDDATPFFA 399
>2c2n_A Malonyl COA-acyl carrier protein transacylase; fatty acid
synthase, lipid synthesis, mitochondrion transfer
transferase; HET: AE4; 1.55A {Homo sapiens}
Length = 339
Score = 36.8 bits (86), Expect = 0.003
Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 11/53 (20%)
Query: 2 GSQWNGMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHI--------LTSTDNT 46
GSQ GMG LL P R+ VL G DL + L T +
Sbjct: 35 GSQVVGMGRGLLNYPRVRELYAAARRVL---GYDLLELSLHGPQETLDRTVHC 84
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid,
acyl-carrier-protein S-malonyltransferase,
acyltransferase, transferase; 2.05A {Burkholderia
pseudomallei 1710B}
Length = 318
Score = 34.8 bits (81), Expect = 0.014
Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 11/53 (20%)
Query: 2 GSQWNGMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHI--------LTSTDNT 46
GSQ GM + + R++++ L G D+ + L T NT
Sbjct: 19 GSQSVGMLNAFADVAVVRETLDEASDAL---GQDIGKLIADGPADELNLTTNT 68
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.8 bits (76), Expect = 0.018
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 19 RQSMERLDAVLKPHGVD 35
+Q++++L A LK + D
Sbjct: 19 KQALKKLQASLKLYADD 35
>3k89_A Malonyl COA-ACP transacylase; bacterial blight, XOO0880, FABD,
xanthomonas oryzae PV. ORYZ KACC10331, transferase;
1.60A {Xanthomonas oryzae PV} PDB: 3een_A 3r97_A*
Length = 314
Score = 32.1 bits (74), Expect = 0.094
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 12/54 (22%)
Query: 2 GSQWNGMGTDLL-RIPLFRQSMERLDAVLKPHGVDLFHI--------LTSTDNT 46
GSQ GM +L P R++ GVDL+ + L T+ T
Sbjct: 14 GSQSLGMLAELSELHPQIRETFAEASEGA---GVDLWALSQGGPEEMLNRTEYT 64
>3im8_A Malonyl acyl carrier protein transacylase; fatty acid synthesis,
malonyl-COA, acyl carrier protein TRAN (MCAT), FABD,
acyltransferase; 2.10A {Streptococcus pneumoniae}
Length = 307
Score = 32.1 bits (74), Expect = 0.10
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 11/53 (20%)
Query: 2 GSQWNGMGTDLL-RIPLFRQSMERLDAVLKPHGVDLFHI-------LTSTDNT 46
G+Q+ GMG D + P+ +++++R VL G DL ++ L T T
Sbjct: 12 GAQYLGMGRDFYDQYPIVKETIDRASQVL---GYDLRYLIDTEEDKLNQTRYT 61
>2zkm_X 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase beta-2;
phospholipase C, phosphoinositide phospholipase,
PLC-beta-2, calcium, coiled coil; 1.62A {Homo sapiens}
SCOP: a.39.1.7 b.7.1.1 b.55.1.1 c.1.18.1 PDB: 2fju_B
Length = 799
Score = 32.3 bits (72), Expect = 0.11
Identities = 18/87 (20%), Positives = 28/87 (32%), Gaps = 1/87 (1%)
Query: 35 DLFHILTSTDNTLFDNILNSFVGIAACQPRSSKWISSSILEDAWGSPLAQTSSAEYHTNN 94
+ L +N++ + QP + +I+SS + SSAE +
Sbjct: 290 GMVWFLCGPENSVLAQDKLL-LHHDMTQPLNHYFINSSHNTYLTAGQFSGLSSAEMYRQV 348
Query: 95 LLSSVFFEEASAHIPANAICIEIAPHG 121
LLS E I HG
Sbjct: 349 LLSGCRCVELDCWKGKPPDEEPIITHG 375
>3qat_A Malonyl COA-acyl carrier protein transacylase; seattle structural
genomics center for infectious disease, S bartonella,
CAT-scratch disease; 1.60A {Bartonella henselae}
Length = 318
Score = 31.7 bits (73), Expect = 0.12
Identities = 17/54 (31%), Positives = 19/54 (35%), Gaps = 12/54 (22%)
Query: 2 GSQWNGMGTDLL-RIPLFRQSMERLDAVLKPHGVDLFHI--------LTSTDNT 46
GSQ GMG L + R E +D L L I LT T N
Sbjct: 15 GSQLIGMGKVLTEQFVAARMVFEEVDDAL---SEKLSDIIFEGPADVLTLTANA 65
>1mla_A Malonyl-coenzyme A acyl carrier protein transacylase;
acyltransferase; 1.50A {Escherichia coli} SCOP:
c.19.1.1 d.58.23.1 PDB: 2g2o_A 2g1h_A 2g2y_A 2g2z_A*
3h0p_A 3hjv_A*
Length = 309
Score = 31.3 bits (72), Expect = 0.15
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 12/54 (22%)
Query: 2 GSQWNGMGTDLL-RIPLFRQSMERLDAVLKPHGVDLFHI--------LTSTDNT 46
GSQ GM D+ P+ ++ A L G DL+ + L T T
Sbjct: 12 GSQTVGMLADMAASYPIVEETFAEASAAL---GYDLWALTQQGPAEELNKTWQT 62
>3tqe_A Malonyl-COA-[acyl-carrier-protein] transacylase; fatty
acid/phospholipid metabolism, transferase; HET: MSE;
1.50A {Coxiella burnetii}
Length = 316
Score = 31.3 bits (72), Expect = 0.16
Identities = 13/54 (24%), Positives = 23/54 (42%), Gaps = 12/54 (22%)
Query: 2 GSQWNGMGTDLL-RIPLFRQSMERLDAVLKPHGVDLFHI--------LTSTDNT 46
GSQ GM +L + P+ ++ ++ + L DL+ + L T T
Sbjct: 16 GSQHLGMLAELGLQQPIVLETFQQASSAL---AYDLWALVQHGPQERLDQTQFT 66
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural
genomics, protein structure initiative; 2.10A
{Clostridium perfringens}
Length = 336
Score = 31.4 bits (72), Expect = 0.20
Identities = 12/54 (22%), Positives = 22/54 (40%), Gaps = 12/54 (22%)
Query: 2 GSQWNGMGTDLL-RIPLFRQSMERLDAVLKPHGVDLFHI--------LTSTDNT 46
G+Q+ GMG + ++ +R L G+D+ + L T+ T
Sbjct: 12 GAQYVGMGKEFFDNFEESKEVFKRSSEAL---GIDMEELCFNDPEGLLNKTEFT 62
>3ohm_B 1-phosphatidylinositol-4,5-bisphosphate phosphodi beta-3; PH
domain, EF hand, TIM barrel, C2 domain, GTPase, lipase,
C binding, GTP binding; HET: GDP; 2.70A {Homo sapiens}
Length = 885
Score = 31.5 bits (70), Expect = 0.21
Identities = 19/87 (21%), Positives = 26/87 (29%), Gaps = 1/87 (1%)
Query: 35 DLFHILTSTDNTLFDNILNSFVGIAACQPRSSKWISSSILEDAWGSPLAQTSSAEYHTNN 94
L +N + + QP S+ +I+SS LA TSS E +
Sbjct: 294 GFSRYLGGEENGILPLEALD-LSTDMTQPLSAYFINSSHNTYLTAGQLAGTSSVEMYRQA 352
Query: 95 LLSSVFFEEASAHIPANAICIEIAPHG 121
LL E HG
Sbjct: 353 LLWGCRCVELDVWKGRPPEEEPFITHG 379
>3gtz_A Putative translation initiation inhibitor; structural genomics,
unknown function, PSI-2, protein struct initiative;
2.50A {Salmonella typhimurium}
Length = 124
Score = 29.9 bits (68), Expect = 0.21
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 19 RQSMERLDAVLKPHGVDLFHILTST 43
++ ++DAVL+ G IL +T
Sbjct: 42 ANTLAQIDAVLEKQGSSKSRILDAT 66
>2h1y_A Malonyl coenzyme A-acyl carrier protein transacyl; FABD, MCAT,
transferase; 2.50A {Helicobacter pylori}
Length = 321
Score = 31.0 bits (71), Expect = 0.23
Identities = 14/53 (26%), Positives = 18/53 (33%), Gaps = 11/53 (20%)
Query: 2 GSQWNGMGTDLL-RIPLFRQSMERLDAVLKPHGVDLFHI-------LTSTDNT 46
GSQ GMG L ++ ER L VD+ L + T
Sbjct: 23 GSQCIGMGKSFYEGHTLAKELFERASNAL---KVDMKKTLFEENELLKESAYT 72
>3im9_A MCAT, MCT, malonyl COA-acyl carrier protein transacylase; fatty
acid synthesis, malonyl-COA: acyl carrier protein TRAN
(MCAT), FABD; 1.46A {Staphylococcus aureus}
Length = 316
Score = 31.0 bits (71), Expect = 0.24
Identities = 12/54 (22%), Positives = 17/54 (31%), Gaps = 12/54 (22%)
Query: 2 GSQWNGMGTDLL-RIPLFRQSMERLDAVLKPHGVDLFHI--------LTSTDNT 46
G+Q GM DL + + L D+ L T+NT
Sbjct: 20 GAQKVGMAQDLFNNNDQATEILTSAAKTL---DFDILETMFTDEEGKLGETENT 70
>3kjj_A NMB1025 protein; YJGF protein family, OPPF, structural genomics,
oxford protein production facility, UN function; 1.90A
{Neisseria meningitidis serogroup B} PDB: 3kjk_A
Length = 128
Score = 29.9 bits (68), Expect = 0.24
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 19 RQSMERLDAVLKPHGVDLFHILTST 43
+ ++D L G D H+L +
Sbjct: 48 ADVLAQIDRWLAECGSDKAHVLDAV 72
>3k12_A Uncharacterized protein A6V7T0; structural genomics, unknown
function, PSI-2, protein struct initiative; 1.49A
{Pseudomonas aeruginosa}
Length = 122
Score = 29.9 bits (68), Expect = 0.28
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 19 RQSMERLDAVLKPHGVDLFHILTST 43
RQ +E +D +L+ G D +L+
Sbjct: 40 RQILENIDRLLQSVGSDRGQVLSVR 64
>3g87_A Malonyl COA-acyl carrier protein transacylase; ssgcid, niaid,
decode biostructures, dried seaweed, acyltran
transferase; 2.30A {Burkholderia pseudomallei}
Length = 394
Score = 29.6 bits (67), Expect = 0.70
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 13/53 (24%)
Query: 2 GSQWNGMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHI--------LTSTDNT 46
GSQ GMG L F + DAVL G + + L T T
Sbjct: 15 GSQAKGMGGALFDR--FADLTAQADAVL---GYSIRALCVDDPRDELGRTQFT 62
>3sbm_A DISD protein, DSZD; transferase; HET: P6G; 1.35A {Sorangium
cellulosum} PDB: 3rgi_A
Length = 281
Score = 29.4 bits (67), Expect = 0.71
Identities = 16/53 (30%), Positives = 19/53 (35%), Gaps = 13/53 (24%)
Query: 2 GSQWNGMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHI--------LTSTDNT 46
GSQ GMG L F R D VL G + + L+ T T
Sbjct: 10 GSQAKGMGRALFDA--FPALTARADGVL---GYSIRALCQDDPDQRLSQTQFT 57
>2cuy_A Malonyl COA-[acyl carrier protein] transacylase; transferase,
structural genomics, NPPSFA; 2.10A {Thermus
thermophilus}
Length = 305
Score = 29.0 bits (66), Expect = 0.97
Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 13/54 (24%)
Query: 2 GSQWNGMGTDLL-RIPLFRQSMERLDAVLKPHGVDLFHI--------LTSTDNT 46
GS GMG L P ++ ++R +A L L + LT T+N
Sbjct: 10 GSHRVGMGRALYEASPAAKEVLDRAEAALP----GLLKLMWEGPEEALTLTENQ 59
>3i3f_A Hypothetical protein; structural genomics, niaid, decode,
infectious seattle structural genomics center for
infectious disease, unknown function; 1.35A {Giardia
lamblia}
Length = 141
Score = 27.7 bits (62), Expect = 1.7
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 19 RQSMERLDAVLKPHGVDLFHILTST 43
RQ+ + + L+ L +I++
Sbjct: 62 RQTFDNIRKCLEYANSGLDYIVSLN 86
>1epw_A Bontoxilysin B, botulinum neurotoxin type B; zinc, metalloprotease,
transmembrane, hydrolase; 1.90A {Clostridium botulinum}
SCOP: b.29.1.6 b.42.4.2 d.92.1.7 h.4.2.1 PDB: 1f31_A*
1g9a_A* 1g9b_A* 1g9c_A* 1g9d_A* 1i1e_A* 1s0b_A 1s0c_A
1s0d_A 1s0e_A 1s0f_A 1s0g_A 2np0_A 3zuq_A 2etf_A 2xhl_A
1z0h_A 2nm1_A 3g94_A 1f82_A ...
Length = 1290
Score = 28.6 bits (63), Expect = 1.8
Identities = 20/122 (16%), Positives = 43/122 (35%), Gaps = 9/122 (7%)
Query: 50 NILNSFVGIAACQPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIP 109
+I N+ + + + R S L+D WG+PL Y+ + + + + +
Sbjct: 1059 SIFNTELSQSNIEERYKIQSYSEYLKDFWGNPL------MYNKEYYMFNAGNKNSYIKLK 1112
Query: 110 ANAICIEIAPHGLLQAILKRSLAEKEVVNIPLTLRGVKDGVKFILNSIGK---LYLNGLD 166
++ EI K + +R + + + K +YL+ +
Sbjct: 1113 KDSPVGEILTRSKYNQNSKYINYRDLYIGEKFIIRRKSNSQSINDDIVRKEDYIYLDFFN 1172
Query: 167 LN 168
LN
Sbjct: 1173 LN 1174
>2ewc_A Conserved hypothetical protein; YJGF proteins family, COG025
putative translation initiation inhibitor; 2.15A
{Streptococcus pyogenes} SCOP: d.79.1.1
Length = 126
Score = 26.2 bits (58), Expect = 4.3
Identities = 3/25 (12%), Positives = 10/25 (40%)
Query: 19 RQSMERLDAVLKPHGVDLFHILTST 43
+ + ++ L G+ L ++
Sbjct: 43 NGAFDEMERRLALVGLTLDAVVQMD 67
>2rci_A Type-2BA cytolytic delta-endotoxin; alpha/beta architecture with
beta-sheet surrounded by two alpha-helix layers; 1.80A
{Bacillus thuringiensis serovarisraelensis}
Length = 204
Score = 26.7 bits (58), Expect = 4.6
Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 12/97 (12%)
Query: 45 NTLFDNILNSFVGIAACQPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEA 104
N++ I N+F + WI W + A +S Y +L S+ E+
Sbjct: 100 NSVVSAITNTFTNLEP--QVDENWIV-------WRNLSATQTSYFY---KILFSIQNEDT 147
Query: 105 SAHIPANAICIEIAPHGLLQAILKRSLAEKEVVNIPL 141
+ I EI Q +L ++ + + +
Sbjct: 148 GRFMAILPIAFEITVDVQKQQLLFITIKDSARYEVKM 184
>3qr0_A Phospholipase C-beta (PLC-beta); PH domain, EF hand, C2 domain, TIM
barrel domain, hydrolase, calcium binding, phospholipid
binding; 2.00A {Sepia officinalis} PDB: 3qr1_A
Length = 816
Score = 27.2 bits (59), Expect = 4.8
Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 3/87 (3%)
Query: 35 DLFHILTSTDNTLFDNILNSFVGIAACQPRSSKWISSSILEDAWGSPLAQTSSAEYHTNN 94
L + L +N L +G ++ +I+SS G L SS E +
Sbjct: 301 GLLYFLMCEENNLTPMHRLD-LGANMKLTLAAYYINSSHNTYLTGHQLTGKSSVEIYRQV 359
Query: 95 LLSSVFFEEASAHIPANAICIEIAPHG 121
LL+ E + I HG
Sbjct: 360 LLTGCRCLELDCWDGKDGEP--IITHG 384
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1;
mixed alpha beta fold, structural genomics, PSI; HET:
SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP:
c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*
Length = 287
Score = 26.7 bits (60), Expect = 5.7
Identities = 10/48 (20%), Positives = 16/48 (33%), Gaps = 3/48 (6%)
Query: 22 MERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAACQPRSSKWI 69
+L GV L H +T I + ++ R K+I
Sbjct: 151 FSLAHRLLPADGVMLLHTITGLHP---KEIHERGLPMSFTFARFLKFI 195
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand
complex, cytoplasm, lipid synthesis, methyltransferase;
HET: D22; 2.39A {Mycobacterium tuberculosis} PDB:
1kpi_A*
Length = 302
Score = 26.0 bits (58), Expect = 9.1
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 3/48 (6%)
Query: 22 MERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAACQPRSSKWI 69
++ + G L H +T D + + R K+I
Sbjct: 166 FKKFYNLTPDDGRMLLHTITIPDK---EEAQELGLTSPMSLLRFIKFI 210
>3qp9_A Type I polyketide synthase pikaii; rossmann fold, ketoreductase,
epimerization, oxidoreductase; 1.88A {Streptomyces
venezuelae}
Length = 525
Score = 26.3 bits (58), Expect = 9.2
Identities = 6/43 (13%), Positives = 9/43 (20%), Gaps = 3/43 (6%)
Query: 16 PLFRQSMERLDAVLKP--HGVDLFHILTSTDNTLFDNILNSFV 56
PL + L V+ L + V
Sbjct: 357 PLAATDADALARVVTAKATAALHLDRLLR-EAAAAGGRPPVLV 398
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0732 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,166,959
Number of extensions: 177082
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 389
Number of HSP's successfully gapped: 58
Length of query: 207
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 118
Effective length of database: 4,216,824
Effective search space: 497585232
Effective search space used: 497585232
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.0 bits)