RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy494
(207 letters)
>d1mlaa1 c.19.1.1 (A:3-127,A:198-307) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Escherichia coli
[TaxId: 562]}
Length = 235
Score = 46.4 bits (109), Expect = 5e-07
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 4/62 (6%)
Query: 2 GSQWNGMGTDLL-RIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAA 60
GSQ GM D+ P+ ++ A L G DL+ + + + +
Sbjct: 10 GSQTVGMLADMAASYPIVEETFAEASAAL---GYDLWALTQQGPAEELNKTWQTQPALLT 66
Query: 61 CQ 62
Sbjct: 67 AS 68
Score = 34.0 bits (77), Expect = 0.006
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 88 AEYHTNNLLSSVFFEEASAHIPANAI--CIEIAPHGLLQAILKRSLAEKEVVNI 139
+ L + V + ++ ++ A + E+ P +L + KR + +
Sbjct: 172 RDALVRQLYNPVQWTKSVEYMAAQGVEHLYEVGPGKVLTGLTKRIVDTLTASAL 225
>d1nm2a1 c.19.1.1 (A:0-133,A:196-314) Catalytic domain of
malonyl-CoA ACP transacylase FabD {Streptomyces
coelicolor A3(2) [TaxId: 100226]}
Length = 253
Score = 44.5 bits (104), Expect = 2e-06
Identities = 19/107 (17%), Positives = 33/107 (30%), Gaps = 10/107 (9%)
Query: 2 GSQWNGMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAAC 61
G+Q G TD L +P + + G+DL H T D + + + A
Sbjct: 11 GAQTPGFLTDWLALPGAADRVAAWSDAI---GLDLAHFGTKADADEIRDTSVAQPLLVAA 67
Query: 62 QPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASAHI 108
I S+ +A + + + E +A
Sbjct: 68 ------GILSAAALGTQT-SVADATGPGFTPGAVAGHSVGEITAAVF 107
Score = 36.0 bits (82), Expect = 0.002
Identities = 9/54 (16%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 89 EYHTNNLLSSVFFEEASAHIPANAI--CIEIAPHGLLQAILKRSLAEKEVVNIP 140
+ + + V ++ + IE+ P G L + KR+L + + +
Sbjct: 184 DRLVGQVANPVRWDLCMETFKELGVTAIIEVCPGGTLTGLAKRALPGVKTLALK 237
>d1chma1 c.55.2.1 (A:2-156) Creatinase {Pseudomonas putida [TaxId:
303]}
Length = 155
Score = 26.3 bits (57), Expect = 2.0
Identities = 23/126 (18%), Positives = 36/126 (28%), Gaps = 5/126 (3%)
Query: 18 FRQSMERLDAVLKPHGVDLFHILTSTDN-TLFDNILNSFVGIAACQPRSSKWISSSILED 76
+ RL A L +D I TS N + + L G + + S
Sbjct: 23 YANRQARLRAHLAAENIDAA-IFTSYHNINYYSDFLYCSFGRPYALVVTEDDVISISANI 81
Query: 77 AWGSPLAQTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHGLLQAI---LKRSLAE 133
G P +T + + A A I I L L +
Sbjct: 82 DGGQPWRRTVGTDNIVYTDWQRDNYFAAIQQALPKARRIGIEHDHLNLQNRDKLAARYPD 141
Query: 134 KEVVNI 139
E+V++
Sbjct: 142 AELVDV 147
>d1imva_ e.1.1.1 (A:) Pigment epithelium-derived factor, PEDF
{Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 26.8 bits (58), Expect = 2.1
Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 16 PLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAAC 61
P F+ + +L A + G DL+ + +S T N+L S + +A
Sbjct: 10 PFFKVPVNKLAAAVSNFGYDLYRVRSSMSPT--TNVLLSPLSVATA 53
>d1jmja_ e.1.1.1 (A:) Heparin cofactor II (Hc-II, leuserpin 2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 420
Score = 26.4 bits (57), Expect = 2.5
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 11 DLLRIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILNSFVGIAAC 61
++L++ + ++RL+ + +L+ +L NT FDNI + VGI+
Sbjct: 33 NILQLFHGKSRIQRLNILNAKFAFNLYRVLKDQVNT-FDNIFIAPVGISTA 82
>d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 259
Score = 25.7 bits (56), Expect = 4.1
Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 6/104 (5%)
Query: 44 DNTLFDNILNSFVGIAACQPRSSKWISSSILEDAW------GSPLAQTSSAEYHTNNLLS 97
+ N+ +++ P +I+ + S + S+ + N L
Sbjct: 111 SFHISTNLESAYHLSQLAHPLLKASGCGNIIFMSSIAGVVSASVGSIYSATKGALNQLAR 170
Query: 98 SVFFEEASAHIPANAICIEIAPHGLLQAILKRSLAEKEVVNIPL 141
++ E AS I ANA+ + L +A+ + + PL
Sbjct: 171 NLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPL 214
>d1ftha_ d.150.1.2 (A:) Holo-(acyl carrier protein) synthase ACPS
{Streptococcus pneumoniae [TaxId: 1313]}
Length = 117
Score = 24.6 bits (53), Expect = 5.7
Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 22/90 (24%)
Query: 7 GMGTDLLRIPLFRQSMERLDAVLKPHGVDLFHILTSTDNTLFDNILN------------- 53
G G D+ + ++ R + K +LT+ + F ++
Sbjct: 4 GHGIDIEELASIESAVTRHEGFAK-------RVLTALEMERFTSLKGRRQIEYLAGRWSA 56
Query: 54 --SFVGIAACQPRSSKWISSSILEDAWGSP 81
+F + +L + G+P
Sbjct: 57 KEAFSKAMGTGISKLGFQDLEVLNNERGAP 86
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 180
Score = 24.9 bits (54), Expect = 6.4
Identities = 10/87 (11%), Positives = 28/87 (32%)
Query: 47 LFDNILNSFVGIAACQPRSSKWISSSILEDAWGSPLAQTSSAEYHTNNLLSSVFFEEASA 106
+ ++ ++ AAC P +++S+++L +A L ++ +
Sbjct: 43 MIKSLFDNGSVFAACSPMEGRFLSTAVLYRGIMEDKPLADAALAAMREKLPLTYWIPTAF 102
Query: 107 HIPANAICIEIAPHGLLQAILKRSLAE 133
I ++ +A
Sbjct: 103 KIGYVEQPGISHRKSMVLLANNTEIAR 129
>d1dfma_ c.52.1.5 (A:) Restriction endonuclease BglII {Bacillus
subtilis [TaxId: 1423]}
Length = 223
Score = 24.9 bits (54), Expect = 7.6
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 13/93 (13%)
Query: 84 QTSSAEYHTNNLLSSVFFEEASAHIPANAICIEIAPHGLLQAILK-------------RS 130
Q S+ + NN + S F +++ I + + I S
Sbjct: 95 QFSNYPFLLNNTVRSELFHKSNMDIDEEGMKVAIIITKGHMFPASNSSLYYEQAQNQLNS 154
Query: 131 LAEKEVVNIPLTLRGVKDGVKFILNSIGKLYLN 163
LAE V ++P+ L G+ + + ++ + Y +
Sbjct: 155 LAEYNVFDVPIRLVGLIEDFETDIDIVSTTYAD 187
>d1nuna_ b.42.1.1 (A:) Fibroblast growth factor-10, FGF10 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 24.0 bits (52), Expect = 9.6
Identities = 8/52 (15%), Positives = 19/52 (36%), Gaps = 5/52 (9%)
Query: 115 IEIAPHGLLQAILKRSLAEKEVVNIP-----LTLRGVKDGVKFILNSIGKLY 161
++I +G + K + + + ++ + +N GKLY
Sbjct: 22 LKIEKNGKVSGTKKENCPYSILEITSVEIGVVAVKAINSNYYLAMNKKGKLY 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.136 0.408
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 765,121
Number of extensions: 32144
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 16
Length of query: 207
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 126
Effective length of database: 1,295,466
Effective search space: 163228716
Effective search space used: 163228716
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.7 bits)