BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4941
(172 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q27IV2|SHRM3_XENLA Protein Shroom3 OS=Xenopus laevis GN=shroom3 PE=2 SV=1
Length = 1788
Score = 140 bits (352), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 76/173 (43%), Positives = 113/173 (65%), Gaps = 2/173 (1%)
Query: 1 MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITS 60
+S L KL +L+ + L ++ + N+ LGE + T++ + +P E KYK+ + ++ + +
Sbjct: 1586 ISSLTCKLEVLKDAKESLIDDIKLNNSLGEEVETQIETLCKPNEFDKYKMFIGDLDKVVN 1645
Query: 61 LLLGLSGRLARAENALIGLREDHC--DRKSLEEKRDKLASQLEEAKELKENIDRRSTNVA 118
LLL LSGRLAR ENAL L ED +RK+ EK+ +L Q E+A+ELKEN+DRR V
Sbjct: 1646 LLLSLSGRLARVENALSSLGEDASAEERKTWNEKKKQLCGQHEDARELKENLDRREKLVM 1705
Query: 119 TLLRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETMEGE 171
L YL+ EEFA Y HF+ MK+ LL++ RE+ DKI+LG+EQL L E++ +
Sbjct: 1706 DFLGNYLTGEEFAHYQHFVKMKSALLIEQRELDDKIKLGQEQLRCLTESLPSD 1758
>sp|A1Z9P3|SHRM_DROME Protein Shroom OS=Drosophila melanogaster GN=Shroom PE=1 SV=2
Length = 1576
Score = 129 bits (325), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 77/168 (45%), Positives = 118/168 (70%), Gaps = 3/168 (1%)
Query: 1 MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITS 60
+ L+ K+ L+ Q ++EE NDRLG+ L +LA + RP+E +K++ HV VG+ITS
Sbjct: 1407 IKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITS 1466
Query: 61 LLLGLSGRLARAENALIGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATL 120
LLL LS RLA+ E++L +++ R +LE KRD L Q+EEA+ LK +I+RR ++A L
Sbjct: 1467 LLLSLSERLAQTESSLETRQQE---RGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGL 1523
Query: 121 LRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETM 168
L K LS++ ADY++FINMKAKL+ DAR+++ +I+ EEQL++L + +
Sbjct: 1524 LAKNLSADMCADYDYFINMKAKLIADARDLAVRIKGSEEQLSSLSDAL 1571
>sp|A2ALU4|SHRM2_MOUSE Protein Shroom2 OS=Mus musculus GN=Shroom2 PE=1 SV=1
Length = 1481
Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 107/167 (64%), Gaps = 2/167 (1%)
Query: 7 KLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLS 66
KL +LR + L E+ + N+ LG+ + + +P E K+++ + ++ + +LLL LS
Sbjct: 1312 KLQVLREARESLLEDIQANNALGDEVEAIVKDVCKPNEFDKFRMFIGDLDKVVNLLLSLS 1371
Query: 67 GRLARAENALIGLREDHC--DRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKY 124
GRLAR ENAL L ++ DR+SL EK+ L Q E+AKELKEN+DRR V +L Y
Sbjct: 1372 GRLARVENALNNLDDNPSPGDRQSLLEKQRVLTQQHEDAKELKENLDRRERIVFDILATY 1431
Query: 125 LSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETMEGE 171
LS E ADY HF+ MK+ L+++ RE+ DKI LGEEQL L ++++ E
Sbjct: 1432 LSEENLADYEHFVKMKSALIIEQRELEDKIHLGEEQLKCLFDSLQPE 1478
>sp|Q7TP36|SHRM2_RAT Protein Shroom2 OS=Rattus norvegicus GN=Shroom2 PE=2 SV=1
Length = 1423
Score = 127 bits (319), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 106/167 (63%), Gaps = 2/167 (1%)
Query: 7 KLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLS 66
KL +LR + L E+ + N+ LG+ + + +P E K+++ + ++ + +LLL LS
Sbjct: 1254 KLQVLREARESLLEDIQANNALGDEVEAIVKDVCKPNEFDKFRMFIGDLDKVVNLLLSLS 1313
Query: 67 GRLARAENALIGLREDHC--DRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKY 124
GRLAR ENAL L + DR+SL EK+ L Q E+AKELKEN+DRR V +L Y
Sbjct: 1314 GRLARVENALNNLDDSPSPGDRQSLLEKQRVLTQQHEDAKELKENLDRRERIVFDILATY 1373
Query: 125 LSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETMEGE 171
LS E ADY HF+ MK+ L+++ RE+ DKI LGEEQL L ++++ E
Sbjct: 1374 LSEENLADYEHFVKMKSALIIEQRELEDKIHLGEEQLKCLFDSLQPE 1420
>sp|Q9QXN0|SHRM3_MOUSE Protein Shroom3 OS=Mus musculus GN=Shroom3 PE=1 SV=2
Length = 1986
Score = 127 bits (318), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/147 (46%), Positives = 98/147 (66%), Gaps = 2/147 (1%)
Query: 25 NDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLSGRLARAENALIGLREDHC 84
N+ LGE + ++ +P E KYK+ + ++ + +LLL LSGRLAR EN L GL ED
Sbjct: 1801 NNALGEEVEALISELCKPNEFDKYKMFIGDLDKVVNLLLSLSGRLARVENVLRGLGEDAS 1860
Query: 85 --DRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKYLSSEEFADYNHFINMKAK 142
+R SL EKR LA Q E+A+ELKEN+DRR V +L YLS+E+ DY HF+ MK+
Sbjct: 1861 KEERSSLNEKRKVLAGQHEDARELKENLDRRERVVLDILANYLSAEQLQDYQHFVKMKST 1920
Query: 143 LLVDAREISDKIQLGEEQLAALQETME 169
LL++ R++ DKI+LG+EQ+ L E++
Sbjct: 1921 LLIEQRKLDDKIKLGQEQVRCLLESLP 1947
>sp|Q8TF72|SHRM3_HUMAN Protein Shroom3 OS=Homo sapiens GN=SHROOM3 PE=1 SV=2
Length = 1996
Score = 126 bits (316), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 73/171 (42%), Positives = 107/171 (62%), Gaps = 2/171 (1%)
Query: 1 MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITS 60
+ L KL L+ + L + + N+ LGE + ++ +P E KY++ + ++ + +
Sbjct: 1787 IGSLTHKLETLQEAKGSLLTDIKLNNALGEEVEALISELCKPNEFDKYRMFIGDLDKVVN 1846
Query: 61 LLLGLSGRLARAENALIGLREDHCD--RKSLEEKRDKLASQLEEAKELKENIDRRSTNVA 118
LLL LSGRLAR EN L GL ED + R SL EKR LA Q E+A+ELKEN+DRR V
Sbjct: 1847 LLLSLSGRLARVENVLSGLGEDASNEERSSLYEKRKILAGQHEDARELKENLDRRERVVL 1906
Query: 119 TLLRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETME 169
+L YLS E+ DY HF+ MK+ LL++ R++ DKI+LG+EQ+ L E++
Sbjct: 1907 GILANYLSEEQLQDYQHFVKMKSTLLIEQRKLDDKIKLGQEQVKCLLESLP 1957
>sp|Q13796|SHRM2_HUMAN Protein Shroom2 OS=Homo sapiens GN=SHROOM2 PE=1 SV=1
Length = 1616
Score = 124 bits (310), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 73/167 (43%), Positives = 105/167 (62%), Gaps = 2/167 (1%)
Query: 7 KLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLS 66
KL +LR + L E+ + N LG + + +P+E K+++ + ++ + +LLL LS
Sbjct: 1447 KLQVLREARESLLEDVQANTVLGAEVEAIVKGVCKPSEFDKFRMFIGDLDKVVNLLLSLS 1506
Query: 67 GRLARAENALIGLRE--DHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKY 124
GRLAR ENAL L + DR+SL EK+ L Q E+AKELKEN+DRR V +L Y
Sbjct: 1507 GRLARVENALNNLDDGASPGDRQSLLEKQRVLIQQHEDAKELKENLDRRERIVFDILANY 1566
Query: 125 LSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETMEGE 171
LS E ADY HF+ MK+ L+++ RE+ DKI LGEEQL L ++++ E
Sbjct: 1567 LSEESLADYEHFVKMKSALIIEQRELEDKIHLGEEQLKCLLDSLQPE 1613
>sp|Q09JY9|SHRM2_XENTR Protein Shroom2 OS=Xenopus tropicalis GN=shroom2 PE=2 SV=1
Length = 1726
Score = 120 bits (301), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 72/167 (43%), Positives = 104/167 (62%), Gaps = 2/167 (1%)
Query: 4 LDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLL 63
+ KL +LR + L E+ + N+ LGE + + +P E K+++ + ++ I +LLL
Sbjct: 1554 ISKKLQVLRDAKETLLEDVQCNNALGEEVEIIVKEVCKPNEFDKFRMFIGDLEKIVNLLL 1613
Query: 64 GLSGRLARAENALIGLREDHC--DRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLL 121
LSGRLAR ENAL L E +RK+L EKR L Q E+AKELKEN+DRR V +L
Sbjct: 1614 SLSGRLARVENALNNLDETVSPEERKTLLEKRKLLTRQHEDAKELKENLDRRERTVYEIL 1673
Query: 122 RKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETM 168
YL+ E ADY HF+ MK+ L+++ RE+ DKI+L E QL L +++
Sbjct: 1674 ANYLNEENLADYEHFVKMKSALILEQRELEDKIKLRESQLKCLTDSL 1720
>sp|Q9ULL8|SHRM4_HUMAN Protein Shroom4 OS=Homo sapiens GN=SHROOM4 PE=1 SV=3
Length = 1493
Score = 120 bits (301), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 69/163 (42%), Positives = 104/163 (63%), Gaps = 1/163 (0%)
Query: 7 KLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLS 66
KL++LR Q L E+ N LGE + L + + E KY L V ++ + +LLL LS
Sbjct: 1324 KLSVLREAQRGLLEDINANSALGEEVEANLKAVCKSNEFEKYHLFVGDLDKVVNLLLSLS 1383
Query: 67 GRLARAENALIGL-REDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKYL 125
GRLAR ENAL + E + ++ L EK+ +L QL +AKELKE++DRR V ++ +YL
Sbjct: 1384 GRLARVENALNSIDSEANQEKLVLIEKKQQLTGQLADAKELKEHVDRREKLVFGMVSRYL 1443
Query: 126 SSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETM 168
++ DY HF+ MK+ L+++ RE+ +KI+LGEEQL L+E++
Sbjct: 1444 PQDQLQDYQHFVKMKSALIIEQRELEEKIKLGEEQLKCLRESL 1486
>sp|Q1W617|SHRM4_MOUSE Protein Shroom4 OS=Mus musculus GN=Shroom4 PE=1 SV=1
Length = 1475
Score = 115 bits (289), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/163 (40%), Positives = 104/163 (63%), Gaps = 1/163 (0%)
Query: 7 KLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLS 66
KL++LR Q L ++ N LGE + L + + E KY L + ++ + +LLL LS
Sbjct: 1306 KLSVLREAQRGLLDDINANAALGEEVEANLKAVCKSNEFEKYHLFIGDLDKVVNLLLSLS 1365
Query: 67 GRLARAENALIGL-REDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKYL 125
GRLAR ENAL + E + ++ L EK+ +L +QL +AKELKE++D R V ++ +YL
Sbjct: 1366 GRLARVENALNSIDSESNQEKLVLIEKKQQLTNQLADAKELKEHVDGREKLVFGMVSRYL 1425
Query: 126 SSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQLAALQETM 168
++ DY HF+ MK+ L+++ RE+ +KI+LGEEQL L+E++
Sbjct: 1426 PQDQLQDYQHFVKMKSALIIEQRELEEKIKLGEEQLKCLKESL 1468
>sp|Q01613|SHRM1_XENLA Protein Shroom1 OS=Xenopus laevis GN=shroom1 PE=1 SV=1
Length = 1420
Score = 95.9 bits (237), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 87/142 (61%), Gaps = 2/142 (1%)
Query: 29 GEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLSGRLARAENALIGLRE--DHCDR 86
G + T + +P E +Y + + ++ + SLL LS RL R EN+L + E D +
Sbjct: 1277 GNNMQTMVKELCKPNEFERYMMFIGDLEKVVSLLFSLSTRLTRVENSLSKVDENTDAEEM 1336
Query: 87 KSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKYLSSEEFADYNHFINMKAKLLVD 146
+SL+E+ + L+SQ E+AK+LK N+DRR V +L KYL+ E+ DY HF+ +K LL++
Sbjct: 1337 QSLKERHNLLSSQREDAKDLKANLDRREQVVTGILVKYLNEEQLQDYKHFVRLKTSLLIE 1396
Query: 147 AREISDKIQLGEEQLAALQETM 168
+ + +KI++ EEQ ++ ++
Sbjct: 1397 QKNLEEKIKVYEEQFESIHNSL 1418
>sp|Q2M3G4|SHRM1_HUMAN Protein Shroom1 OS=Homo sapiens GN=SHROOM1 PE=1 SV=1
Length = 852
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 101 EEAKELKENIDRRSTNVATLLRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQ 160
E+AKELKE++ RR V +L + L EE Y + KA +L R + ++I+L ++Q
Sbjct: 757 EDAKELKEHVARRERAVREVLVRALPVEELRVYCALLAGKAAVLAQQRNLDERIRLLQDQ 816
Query: 161 LAALQETM 168
L A+++ +
Sbjct: 817 LDAIRDDL 824
>sp|Q5SX79|SHRM1_MOUSE Protein Shroom1 OS=Mus musculus GN=Shroom1 PE=1 SV=2
Length = 823
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 69 LARAENALIGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKYLSSE 128
LARA G D +R SL ++ L Q EEAKELKE++ RR + +L + L +E
Sbjct: 701 LARA-----GSNSDPDERASLLQRLQLLQRQQEEAKELKEHVARREQTLRQVLERELPAE 755
Query: 129 EFADYNHFINMKAKLLVDAREISDKIQLGEEQL 161
Y + KA++L R + D+I+ ++QL
Sbjct: 756 HLRSYCVLLASKARILSQQRSLDDRIRFLKDQL 788
>sp|Q9H8W5|TRI45_HUMAN Tripartite motif-containing protein 45 OS=Homo sapiens GN=TRIM45
PE=1 SV=2
Length = 580
Score = 32.3 bits (72), Expect = 1.6, Method: Composition-based stats.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 87 KSLEEKRDKLASQLEEAKELKEN-IDRRSTNVATLLRKYLSSEEFADYNHFINMKAKLLV 145
K++EE RDKL QLE+ + KEN + + + LL + EF ++ ++L+
Sbjct: 286 KAIEEHRDKLLKQLEDIRAQKENSLQLQKAQLEQLLADMRTGVEFTEHLLTSGSDLEILI 345
Query: 146 DAREISDKIQ 155
R + ++++
Sbjct: 346 TKRVVVERLR 355
>sp|Q0WVX5|SSY4_ARATH Probable starch synthase 4, chloroplastic/amyloplastic
OS=Arabidopsis thaliana GN=SS4 PE=2 SV=1
Length = 1040
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 26/104 (25%)
Query: 71 RAENALIGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKYLSSEEF 130
+AE A+I L+++ + L K DK+ L+EA KE SSE+
Sbjct: 371 QAEQAVIVLQQN----QDLRNKVDKIEESLKEANVYKE-----------------SSEKI 409
Query: 131 ADYNHFINMKAKLLVDAREISDK-----IQLGEEQLAALQETME 169
YN + K LL + E SD +QL +E + QET+E
Sbjct: 410 QQYNELMQHKVTLLEERLEKSDAEIFSYVQLYQESIKEFQETLE 453
>sp|O59742|CLU_SCHPO Clustered mitochondria protein homolog OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=clu1 PE=3 SV=3
Length = 1173
Score = 31.6 bits (70), Expect = 2.4, Method: Composition-based stats.
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 57 HITSLLLGLSGRLARAENALIGLREDHCDRKSL-----EEKRDKLASQLEEAKELKENID 111
HI +LL LS +L + + G+R C SL E + K +S LEE ++ ENI
Sbjct: 120 HIYTLLEFLSRKLPSSSTS-PGIRAGFCIFPSLNIPSGENLQIKSSSSLEEINKIPENIV 178
Query: 112 RRSTNVATLLRKYLSS 127
+S + LL+K+ +S
Sbjct: 179 TQSLSYTNLLKKFETS 194
>sp|Q5BIM1|TRI45_BOVIN Tripartite motif-containing protein 45 OS=Bos taurus GN=TRIM45 PE=2
SV=1
Length = 580
Score = 30.8 bits (68), Expect = 4.4, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 87 KSLEEKRDKLASQLEEAKELKEN-IDRRSTNVATLLRKYLSSEEFADY 133
K++EE RDKL QLE+ + KEN + + + LL + EF ++
Sbjct: 286 KAIEEHRDKLLKQLEDIRVQKENSLQLQKAQLEQLLADMRTGVEFTEH 333
>sp|Q8CEC0|NUP88_MOUSE Nuclear pore complex protein Nup88 OS=Mus musculus GN=Nup88 PE=2
SV=1
Length = 753
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 80 REDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNV 117
R H RKSL E ++LA + EEAKE +E+I R V
Sbjct: 618 RVSHLFRKSLREMAERLADKYEEAKEKQEDIMNRMKKV 655
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.311 0.128 0.330
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,924,178
Number of Sequences: 539616
Number of extensions: 1964719
Number of successful extensions: 9024
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 287
Number of HSP's that attempted gapping in prelim test: 8747
Number of HSP's gapped (non-prelim): 587
length of query: 172
length of database: 191,569,459
effective HSP length: 109
effective length of query: 63
effective length of database: 132,751,315
effective search space: 8363332845
effective search space used: 8363332845
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (26.6 bits)