Query psy4941
Match_columns 172
No_of_seqs 94 out of 96
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 21:49:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4941.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4941hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3thf_A Protein shroom; coiled- 100.0 4.6E-74 1.6E-78 473.1 19.8 167 1-170 21-187 (190)
2 3thf_A Protein shroom; coiled- 66.1 53 0.0018 26.8 10.5 75 3-101 105-179 (190)
3 2ovc_A Potassium voltage-gated 42.6 8 0.00028 23.5 0.9 17 63-79 6-22 (33)
4 3v9r_B MHF2, uncharacterized p 36.4 17 0.00058 26.5 1.9 15 50-64 64-78 (88)
5 3e98_A GAF domain of unknown f 31.5 71 0.0024 26.2 5.2 49 1-49 74-122 (252)
6 2pnv_A Small conductance calci 31.2 47 0.0016 21.0 3.2 30 140-169 11-40 (43)
7 2z5i_I TM, tropomyosin alpha-1 30.8 65 0.0022 20.1 3.7 24 1-24 5-28 (40)
8 1ud0_A HSC70, 70 kDa heat-shoc 28.5 1.5E+02 0.0051 20.5 7.6 56 70-125 14-78 (113)
9 3hfe_A Potassium voltage-gated 27.0 16 0.00053 22.0 0.3 16 64-79 7-22 (31)
10 3mtu_A Tropomyosin alpha-1 cha 25.0 1.2E+02 0.004 20.8 4.6 38 1-38 4-48 (75)
11 3azd_A Short alpha-tropomyosin 24.7 30 0.001 21.0 1.3 29 1-29 6-35 (37)
12 3bj4_A Potassium voltage-gated 23.4 20 0.00067 23.5 0.3 17 63-79 13-29 (49)
13 1zme_C Proline utilization tra 22.6 55 0.0019 20.7 2.4 23 148-170 47-69 (70)
14 2p32_A Heat shock 70 kDa prote 22.4 2.1E+02 0.0073 20.2 6.7 56 70-125 28-92 (120)
No 1
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=4.6e-74 Score=473.12 Aligned_cols=167 Identities=46% Similarity=0.695 Sum_probs=161.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHhhcCchhHHHHHHHHHhHHHHHHHHHHhHhhHHHHHHHhhCCC
Q psy4941 1 MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLSGRLARAENALIGLR 80 (172)
Q Consensus 1 ~~~l~~kL~~L~~eqe~l~ee~~~n~~lG~~ve~~V~~~ckp~E~eKy~~Fi~DlekVv~LLLsLs~RLaRvenaL~~l~ 80 (172)
|++|++||.+|+++|++|++|+++|+++|++|++.|+++|+|||++||+|||||||||||||||||||||||||||.+
T Consensus 21 i~~L~~kL~~L~~eqe~l~ee~~~N~~lG~~vea~V~~~c~P~E~eKy~~FigDLekVv~LLLsLs~RLaRvenaL~~-- 98 (190)
T 3thf_A 21 IKHLNQKIVSLKREQQTISEECSANDRLGQDLFAKLAEKVRPSEASKFRTHVDAVGNITSLLLSLSERLAQTESSLET-- 98 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcc--
Confidence 478999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCHHHHHHHHHHHHHHHhHHHHHHHHHHhhhhhhhHHHHHHHhcCChHHHhhHHHHHHhHHHHHHHhhchHHHhhhcHHH
Q psy4941 81 EDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTNVATLLRKYLSSEEFADYNHFINMKAKLLVDAREISDKIQLGEEQ 160 (172)
Q Consensus 81 ~d~~Er~~L~~k~~~L~~Q~EDAkeLKe~ldRRe~~v~~iL~~~L~~eql~dY~~fv~mKa~Ll~eqreLddkIklgEEQ 160 (172)
+++||.+|.+|+++|++|+||||+||+|+|||+++|++||++|||+|||+||+|||+|||+||++||+||||||+||||
T Consensus 99 -~~~Er~sL~~K~~~L~~Q~EDAkeLKe~ldRRe~~V~~iL~~~L~~eql~DY~~fv~mKa~Ll~eqReLddkIklgeEQ 177 (190)
T 3thf_A 99 -RQQERGALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLAKNLSADMCADYDYFINMKAKLIADARDLAVRIKGSEEQ 177 (190)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHH
Confidence 4899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhccC
Q psy4941 161 LAALQETMEG 170 (172)
Q Consensus 161 L~~L~esL~~ 170 (172)
|+||++||+-
T Consensus 178 L~~L~~sL~q 187 (190)
T 3thf_A 178 LSSLSDALVQ 187 (190)
T ss_dssp HHHHTTC---
T ss_pred HHHHHHhhcc
Confidence 9999999974
No 2
>3thf_A Protein shroom; coiled-coil, anti-parallel, helical, RHO-kinase, actin-bindi protein binding, cytoskeleton regulator; 2.70A {Drosophila melanogaster}
Probab=66.08 E-value=53 Score=26.84 Aligned_cols=75 Identities=21% Similarity=0.234 Sum_probs=58.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHhhcCchhHHHHHHHHHhHHHHHHHHHHhHhhHHHHHHHhhCCCCC
Q psy4941 3 RLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGLSGRLARAENALIGLRED 82 (172)
Q Consensus 3 ~l~~kL~~L~~eqe~l~ee~~~n~~lG~~ve~~V~~~ckp~E~eKy~~Fi~DlekVv~LLLsLs~RLaRvenaL~~l~~d 82 (172)
+|..|...|....+.-.+==...++.|..|...+...-+|.++.-|+-||.-=-++
T Consensus 105 sL~~K~~~L~~Q~EDAkeLKe~ldRRe~~V~~iL~~~L~~eql~DY~~fv~mKa~L------------------------ 160 (190)
T 3thf_A 105 ALESKRDLLYEQMEEAQRLKSDIERRGVSIAGLLAKNLSADMCADYDYFINMKAKL------------------------ 160 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHH------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH------------------------
Confidence 56677777777766655545566788899999999999999999999998643222
Q ss_pred HHHHHHHHHHHHHHHhHHH
Q psy4941 83 HCDRKSLEEKRDKLASQLE 101 (172)
Q Consensus 83 ~~Er~~L~~k~~~L~~Q~E 101 (172)
-.|...|.+|.++..+|+.
T Consensus 161 l~eqReLddkIklgeEQL~ 179 (190)
T 3thf_A 161 IADARDLAVRIKGSEEQLS 179 (190)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhhHHHHH
Confidence 1577888888888888875
No 3
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=42.57 E-value=8 Score=23.47 Aligned_cols=17 Identities=18% Similarity=0.548 Sum_probs=13.7
Q ss_pred HHhHhhHHHHHHHhhCC
Q psy4941 63 LGLSGRLARAENALIGL 79 (172)
Q Consensus 63 LsLs~RLaRvenaL~~l 79 (172)
.|++|||.|||.-...+
T Consensus 6 ~Sm~~Rl~kVE~qv~~m 22 (33)
T 2ovc_A 6 ISMMGRVVKVEKQVQSI 22 (33)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 48899999999876543
No 4
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=36.44 E-value=17 Score=26.52 Aligned_cols=15 Identities=40% Similarity=0.483 Sum_probs=12.6
Q ss_pred HHHHhHHHHHHHHHH
Q psy4941 50 LHVQEVGHITSLLLG 64 (172)
Q Consensus 50 ~Fi~DlekVv~LLLs 64 (172)
.=+.|||||.+|||-
T Consensus 64 LeveDLEkiaGlL~~ 78 (88)
T 3v9r_B 64 LSHQDLERIVGLLLM 78 (88)
T ss_dssp CCHHHHHHHHHHHHH
T ss_pred eehHHHHHHHHHHHH
Confidence 447899999999983
No 5
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=31.50 E-value=71 Score=26.19 Aligned_cols=49 Identities=16% Similarity=0.104 Sum_probs=41.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhHHhhHHHHHHHHhhcCchhHHHHH
Q psy4941 1 MSRLDSKLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAETAKYK 49 (172)
Q Consensus 1 ~~~l~~kL~~L~~eqe~l~ee~~~n~~lG~~ve~~V~~~ckp~E~eKy~ 49 (172)
|+.++.++..|+++-..|-+-++.|+++...+-.++...-.++.++-+-
T Consensus 74 ~~~LR~r~~~Le~~L~~Li~~A~~Ne~l~~~~~~l~l~LL~a~sl~~l~ 122 (252)
T 3e98_A 74 VRLLRERNIEMRHRLSQLMDVARENDRLFDKTRRLVLDLLDATSLEDVV 122 (252)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 3567889999999999999999999999999998888888777666544
No 6
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=31.21 E-value=47 Score=20.99 Aligned_cols=30 Identities=17% Similarity=0.213 Sum_probs=25.4
Q ss_pred HHHHHHHhhchHHHhhhcHHHHHHHHhhcc
Q psy4941 140 KAKLLVDAREISDKIQLGEEQLAALQETME 169 (172)
Q Consensus 140 Ka~Ll~eqreLddkIklgEEQL~~L~esL~ 169 (172)
=+-+=..|.+||+||--.|..|+.|.+++.
T Consensus 11 vsel~~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 11 ISDLNERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567899999999999999999998875
No 7
>2z5i_I TM, tropomyosin alpha-1 chain and general control protein GCN4; coiled coil, actin, troponin, cytoskeleton, cardiomyopathy; 2.10A {Oryctolagus cuniculus} PDB: 2z5h_I 2g9j_A 1tmz_A
Probab=30.77 E-value=65 Score=20.06 Aligned_cols=24 Identities=13% Similarity=0.270 Sum_probs=19.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHh
Q psy4941 1 MSRLDSKLTLLRSVQVDLNEESRG 24 (172)
Q Consensus 1 ~~~l~~kL~~L~~eqe~l~ee~~~ 24 (172)
|+.|++|++.|+-+++.-.+....
T Consensus 5 MdAIKKKMq~lK~ekd~A~drAe~ 28 (40)
T 2z5i_I 5 MDAIKKKMQMLKLDKENALDRAEQ 28 (40)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 678999999999998877665544
No 8
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus norvegicus} SCOP: a.8.4.1
Probab=28.47 E-value=1.5e+02 Score=20.54 Aligned_cols=56 Identities=14% Similarity=0.235 Sum_probs=38.7
Q ss_pred HHHHHHhh--CCC--CCHHHHHHHHHHHHHHHhHHH-----HHHHHHHhhhhhhhHHHHHHHhcC
Q psy4941 70 ARAENALI--GLR--EDHCDRKSLEEKRDKLASQLE-----EAKELKENIDRRSTNVATLLRKYL 125 (172)
Q Consensus 70 aRvenaL~--~l~--~d~~Er~~L~~k~~~L~~Q~E-----DAkeLKe~ldRRe~~v~~iL~~~L 125 (172)
-.++++|. ... -++++|..+.....-+..-++ |..++++.++.=+.++..|..++.
T Consensus 14 y~~e~~L~~~e~~~kl~~~ek~~i~~~i~~l~~~L~~~~~ad~~~i~~~~~~L~~~~~~i~~~~~ 78 (113)
T 1ud0_A 14 FNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQKELEKVCNPIITKLY 78 (113)
T ss_dssp HHHHHHHTSGGGTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcchhhhccCCHHHHHHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677775 221 256788888888766654444 677888888888888888876643
No 9
>3hfe_A Potassium voltage-gated channel subfamily KQT MEM; trimer, atrial fibrillation, cell membrane, cytoplasmic VESI deafness, disease mutation; 1.70A {Homo sapiens} PDB: 3hfc_A
Probab=27.04 E-value=16 Score=22.03 Aligned_cols=16 Identities=31% Similarity=0.530 Sum_probs=12.7
Q ss_pred HhHhhHHHHHHHhhCC
Q psy4941 64 GLSGRLARAENALIGL 79 (172)
Q Consensus 64 sLs~RLaRvenaL~~l 79 (172)
..++||.|||--+..+
T Consensus 7 TIGaRLnRvE~k~t~M 22 (31)
T 3hfe_A 7 TIGARLNRVEDKVTQL 22 (31)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 3589999999887654
No 10
>3mtu_A Tropomyosin alpha-1 chain, microtubule-associated RP/EB family member 1; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Gallus gallus} PDB: 3mud_C*
Probab=24.99 E-value=1.2e+02 Score=20.76 Aligned_cols=38 Identities=8% Similarity=0.110 Sum_probs=29.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHhhHH-------hhHHHHHHHHh
Q psy4941 1 MSRLDSKLTLLRSVQVDLNEESRGNDR-------LGEALATRLAS 38 (172)
Q Consensus 1 ~~~l~~kL~~L~~eqe~l~ee~~~n~~-------lG~~ve~~V~~ 38 (172)
|+.|++|+..|+.+.+...+.+..-+. -=..++.++++
T Consensus 4 m~aiKkkmqaLk~Ekdna~e~~e~lE~ERdFYf~KLRdiE~l~q~ 48 (75)
T 3mtu_A 4 MDAIKKKMQMLKLDKENALDRAEQAEADKDFYFGKLRNIELICQE 48 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 568999999999999999988887665 33455555554
No 11
>3azd_A Short alpha-tropomyosin, transcription factor GCN; coiled-coil, actin-binding protein, muscle protein; 0.98A {Rattus norvegicus} PDB: 1ihq_A 2k8x_A
Probab=24.75 E-value=30 Score=20.97 Aligned_cols=29 Identities=17% Similarity=0.260 Sum_probs=21.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHH-hhHHhh
Q psy4941 1 MSRLDSKLTLLRSVQVDLNEESR-GNDRLG 29 (172)
Q Consensus 1 ~~~l~~kL~~L~~eqe~l~ee~~-~n~~lG 29 (172)
|..+++|++.|+.+.+.+++++. .++.+|
T Consensus 6 i~avKkKiq~lq~q~d~aee~~~~~~~~l~ 35 (37)
T 3azd_A 6 LEAVRRKIRSLQEQNYHLENEVARLKKLVG 35 (37)
T ss_dssp CHHHHHHHHHHHHHTTTTHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56789999999999888877764 333343
No 12
>3bj4_A Potassium voltage-gated channel subfamily KQT member 1; coiled coil, alternative splicing, deafness, disease mutation, glycoprotein, ION transport; 2.00A {Homo sapiens}
Probab=23.41 E-value=20 Score=23.55 Aligned_cols=17 Identities=29% Similarity=0.440 Sum_probs=13.8
Q ss_pred HHhHhhHHHHHHHhhCC
Q psy4941 63 LGLSGRLARAENALIGL 79 (172)
Q Consensus 63 LsLs~RLaRvenaL~~l 79 (172)
.|++|||.|||.-...+
T Consensus 13 ~S~~~Rl~rVE~qV~~m 29 (49)
T 3bj4_A 13 NTIGARLNRVEDKVTQL 29 (49)
T ss_dssp CSHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHH
Confidence 47899999999877643
No 13
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=22.57 E-value=55 Score=20.70 Aligned_cols=23 Identities=9% Similarity=0.151 Sum_probs=19.9
Q ss_pred hchHHHhhhcHHHHHHHHhhccC
Q psy4941 148 REISDKIQLGEEQLAALQETMEG 170 (172)
Q Consensus 148 reLddkIklgEEQL~~L~esL~~ 170 (172)
..|+++|...|.+|..|.+.+..
T Consensus 47 ~~L~~ri~~Le~~l~~l~~~l~~ 69 (70)
T 1zme_C 47 QQLQKDLNDKTEENNRLKALLLE 69 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46899999999999999988764
No 14
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=22.37 E-value=2.1e+02 Score=20.24 Aligned_cols=56 Identities=18% Similarity=0.271 Sum_probs=37.6
Q ss_pred HHHHHHhhC--CC--CCHHHHHHHHHHHHHHHhHHH-----HHHHHHHhhhhhhhHHHHHHHhcC
Q psy4941 70 ARAENALIG--LR--EDHCDRKSLEEKRDKLASQLE-----EAKELKENIDRRSTNVATLLRKYL 125 (172)
Q Consensus 70 aRvenaL~~--l~--~d~~Er~~L~~k~~~L~~Q~E-----DAkeLKe~ldRRe~~v~~iL~~~L 125 (172)
-.++++|.. .. -++++|..+.....-|..-++ |..+++..++.=+.++..|..++.
T Consensus 28 y~~e~~L~e~~~~dkl~~eek~~I~~~i~el~~~L~~~~~ad~e~ik~k~~eL~~~~~~i~~k~y 92 (120)
T 2p32_A 28 FNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWLDSNQTAEKEEFEHQQKDLEGLANPIISKLY 92 (120)
T ss_dssp HHHHHHHTCTTTGGGSCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhchhhhccCCHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777754 32 256788888888766655444 567788888877777777776543
Done!