Query psy4941
Match_columns 172
No_of_seqs 94 out of 96
Neff 4.0
Searched_HMMs 13730
Date Fri Aug 16 21:49:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4941.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/4941hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1fioa_ a.47.2.1 (A:) Sso1 {Ba 35.7 59 0.0043 21.9 10.0 63 48-110 4-69 (196)
2 d1b0na1 a.34.1.1 (A:74-108) Si 23.0 63 0.0046 18.3 4.0 27 115-141 7-33 (35)
3 d1st6a3 a.24.9.1 (A:253-371) V 20.9 1.3E+02 0.0092 20.9 8.0 60 35-103 56-118 (119)
4 d1st6a5 a.24.9.1 (A:489-646) V 19.9 1.5E+02 0.011 21.3 7.1 60 35-103 40-102 (158)
5 d1i2ta_ a.144.1.1 (A:) hyperpl 18.0 1.1E+02 0.0078 18.9 6.5 29 26-65 3-31 (61)
6 d1ylqa1 d.218.1.5 (A:1-90) Put 16.3 15 0.0011 24.2 0.1 17 39-55 70-86 (90)
7 d1fx0a1 a.69.1.1 (A:373-501) F 14.8 25 0.0018 24.4 1.0 29 43-71 19-47 (129)
8 d2tpta1 a.46.2.1 (A:1-70) Thym 14.1 93 0.0068 18.7 3.7 26 115-140 24-49 (70)
9 d1skyb1 a.69.1.1 (B:372-502) F 13.8 20 0.0015 25.0 0.2 29 43-71 19-47 (131)
10 d1h1oa2 a.3.1.4 (A:94-183) Cyt 12.6 1.7E+02 0.012 18.5 4.9 40 94-138 49-88 (90)
No 1
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=35.73 E-value=59 Score=21.92 Aligned_cols=63 Identities=14% Similarity=0.188 Sum_probs=41.9
Q ss_pred HHHHHHhHHHHHHHHHHhHhhHHHHHHHhhCC--CCCHHHHHHHHHHHHHHHhHHHH-HHHHHHhh
Q psy4941 48 YKLHVQEVGHITSLLLGLSGRLARAENALIGL--REDHCDRKSLEEKRDKLASQLEE-AKELKENI 110 (172)
Q Consensus 48 y~~Fi~DlekVv~LLLsLs~RLaRvenaL~~l--~~d~~Er~~L~~k~~~L~~Q~ED-AkeLKe~l 110 (172)
|..|..+++.|-+-+-.+...+.++...-..+ .+++++...+..+...+..+... ++.+|+.+
T Consensus 4 ~~~f~~~v~~I~~~i~~i~~~i~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~k~~~ 69 (196)
T d1fioa_ 4 FVGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEI 69 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78899999999999999998888888655432 34566556666665555444333 34444443
No 2
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=23.01 E-value=63 Score=18.27 Aligned_cols=27 Identities=11% Similarity=0.265 Sum_probs=23.7
Q ss_pred hHHHHHHHhcCChHHHhhHHHHHHhHH
Q psy4941 115 TNVATLLRKYLSSEEFADYNHFINMKA 141 (172)
Q Consensus 115 ~~v~~iL~~~L~~eql~dY~~fv~mKa 141 (172)
..|.+.+.+-.|.+||+.|-.|-+-|.
T Consensus 7 ~lVkeAM~SGvSK~QFrEflef~kWk~ 33 (35)
T d1b0na1 7 KLVRDAMTSGVSKKQFREFLDYQKWRK 33 (35)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHHHHHHh
Confidence 578889999999999999999988764
No 3
>d1st6a3 a.24.9.1 (A:253-371) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=20.87 E-value=1.3e+02 Score=20.88 Aligned_cols=60 Identities=18% Similarity=0.231 Sum_probs=40.9
Q ss_pred HHHhhcCchhHHHHHHHHHhHHHHHHHHHHhHhhHHHHHHHhhCCCCCHHHH---HHHHHHHHHHHhHHHHH
Q psy4941 35 RLASEARPAETAKYKLHVQEVGHITSLLLGLSGRLARAENALIGLREDHCDR---KSLEEKRDKLASQLEEA 103 (172)
Q Consensus 35 ~V~~~ckp~E~eKy~~Fi~DlekVv~LLLsLs~RLaRvenaL~~l~~d~~Er---~~L~~k~~~L~~Q~EDA 103 (172)
.|.+.|.|.+...+..-.++|+..+.=|--|-.| +-.++|+=+ ..+.+|..-|.....+|
T Consensus 56 kva~~~~~~~r~~Il~~c~ei~~lt~qLadLr~~---------G~G~sPeA~~lA~qi~~kL~~L~~~v~~A 118 (119)
T d1st6a3 56 KAGELCAGKERREILGTCKTLGQMTDQLADLRAR---------GQGATPMAMQKAQQVSQGLDLLTAKVENA 118 (119)
T ss_dssp HHHHTTCSTTHHHHHHHHHHHHHHHHHHHHHTTT---------TCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4778899999999998888888776555444333 444556533 45567777777776665
No 4
>d1st6a5 a.24.9.1 (A:489-646) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=19.95 E-value=1.5e+02 Score=21.34 Aligned_cols=60 Identities=23% Similarity=0.306 Sum_probs=31.9
Q ss_pred HHHhhcCchhHHHHHHHHHhHHHHHHHHHHhHhhHHHHHHHhhCCCCCHHHH---HHHHHHHHHHHhHHHHH
Q psy4941 35 RLASEARPAETAKYKLHVQEVGHITSLLLGLSGRLARAENALIGLREDHCDR---KSLEEKRDKLASQLEEA 103 (172)
Q Consensus 35 ~V~~~ckp~E~eKy~~Fi~DlekVv~LLLsLs~RLaRvenaL~~l~~d~~Er---~~L~~k~~~L~~Q~EDA 103 (172)
.|.+.|.|-+..+...-.++|+.++.=|..|..| +..++|+-+ ..+.+|..-|.++..+|
T Consensus 40 rvA~~~~~~~r~~Il~~C~el~~l~~~LadLr~~---------G~G~sPeA~~lA~qi~~kL~dL~~~v~~A 102 (158)
T d1st6a5 40 RLANVMMGPYRQDLLAKCDRVDQLAAQLADLAAR---------GEGESPQARAIAAQLQDSLKDLKARMQEA 102 (158)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHHHHHHHHHSSTTS---------SCCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHc---------CCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899887666655555555555444444433 333445422 23445555555555444
No 5
>d1i2ta_ a.144.1.1 (A:) hyperplastic discs protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.02 E-value=1.1e+02 Score=18.89 Aligned_cols=29 Identities=38% Similarity=0.468 Sum_probs=22.3
Q ss_pred HHhhHHHHHHHHhhcCchhHHHHHHHHHhHHHHHHHHHHh
Q psy4941 26 DRLGEALATRLASEARPAETAKYKLHVQEVGHITSLLLGL 65 (172)
Q Consensus 26 ~~lG~~ve~~V~~~ckp~E~eKy~~Fi~DlekVv~LLLsL 65 (172)
..+|+.+...|.+..+ . --+|||+.||-+
T Consensus 3 ~~LGE~Ly~~V~~~~p-~----------~A~KITGMLLEm 31 (61)
T d1i2ta_ 3 QALGERLYPRVQAMQP-A----------FASKITGMLLEL 31 (61)
T ss_dssp HHHHHHHHHHHHHHCG-G----------GHHHHHHHHTTS
T ss_pred HHHHHHhHHHHHHHCh-h----------hhcchhHHHhcC
Confidence 4689999999988763 2 237899988865
No 6
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=16.30 E-value=15 Score=24.23 Aligned_cols=17 Identities=12% Similarity=-0.058 Sum_probs=14.0
Q ss_pred hcCchhHHHHHHHHHhH
Q psy4941 39 EARPAETAKYKLHVQEV 55 (172)
Q Consensus 39 ~ckp~E~eKy~~Fi~Dl 55 (172)
+++|.||++|+.|+...
T Consensus 70 v~tpeefe~~~k~~~~y 86 (90)
T d1ylqa1 70 ILTKKEWKMSKRFIRKY 86 (90)
T ss_dssp EECHHHHHHHHTTCSCC
T ss_pred EcCHHHHHHHHHHHHHH
Confidence 57899999999998543
No 7
>d1fx0a1 a.69.1.1 (A:373-501) F1 ATP synthase alpha subunit, domain 3 {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}
Probab=14.83 E-value=25 Score=24.42 Aligned_cols=29 Identities=21% Similarity=0.235 Sum_probs=25.6
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHhHhhHHH
Q psy4941 43 AETAKYKLHVQEVGHITSLLLGLSGRLAR 71 (172)
Q Consensus 43 ~E~eKy~~Fi~DlekVv~LLLsLs~RLaR 71 (172)
+|++.|..|=.|||-.|.-.|.=|.||..
T Consensus 19 ~El~aFaqfgsdlD~~t~~~l~rG~rl~E 47 (129)
T d1fx0a1 19 AELEAFAQFASDLDKATQNQLARGQRLRE 47 (129)
T ss_dssp HHHTTTGGGCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccchhHHHHHhhhHHHHHHH
Confidence 79999999999999999988888887754
No 8
>d2tpta1 a.46.2.1 (A:1-70) Thymidine phosphorylase {Escherichia coli [TaxId: 562]}
Probab=14.12 E-value=93 Score=18.67 Aligned_cols=26 Identities=12% Similarity=0.055 Sum_probs=22.7
Q ss_pred hHHHHHHHhcCChHHHhhHHHHHHhH
Q psy4941 115 TNVATLLRKYLSSEEFADYNHFINMK 140 (172)
Q Consensus 115 ~~v~~iL~~~L~~eql~dY~~fv~mK 140 (172)
.++..|+...+|+.|...|-.-+.+|
T Consensus 24 ~~~~~i~~g~~~d~qi~afL~al~~k 49 (70)
T d2tpta1 24 FFINGIRDNTISEGQIAALAMTIFFH 49 (70)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCchHHHHHHHHHHHHHc
Confidence 57889999999999999998877776
No 9
>d1skyb1 a.69.1.1 (B:372-502) F1 ATP synthase alpha subunit, domain 3 {Bacillus sp., strain ps3 [TaxId: 1409]}
Probab=13.80 E-value=20 Score=24.99 Aligned_cols=29 Identities=10% Similarity=0.106 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHhHHHHHHHHHHhHhhHHH
Q psy4941 43 AETAKYKLHVQEVGHITSLLLGLSGRLAR 71 (172)
Q Consensus 43 ~E~eKy~~Fi~DlekVv~LLLsLs~RLaR 71 (172)
+|++.|..|=.|||-.|.-.|.-|.|+..
T Consensus 19 rEle~FaqFgsdLD~~t~~~L~rG~rl~E 47 (131)
T d1skyb1 19 RELEAFAQFGSDLDKATQANVARGARTVE 47 (131)
T ss_dssp HHHC-CCCC-CC-CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHhhHHHHH
Confidence 79999999999999999999999988764
No 10
>d1h1oa2 a.3.1.4 (A:94-183) Cytochrome c4 {Thiobacillus ferrooxidans [TaxId: 920]}
Probab=12.63 E-value=1.7e+02 Score=18.46 Aligned_cols=40 Identities=13% Similarity=0.247 Sum_probs=28.4
Q ss_pred HHHHhHHHHHHHHHHhhhhhhhHHHHHHHhcCChHHHhhHHHHHH
Q psy4941 94 DKLASQLEEAKELKENIDRRSTNVATLLRKYLSSEEFADYNHFIN 138 (172)
Q Consensus 94 ~~L~~Q~EDAkeLKe~ldRRe~~v~~iL~~~L~~eql~dY~~fv~ 138 (172)
..|..|+.+-+. ..|...+-...++.||++++.+--.|+.
T Consensus 49 ~Yl~~qL~~f~~-----g~R~~~~M~~~a~~lsd~ei~~la~Y~a 88 (90)
T d1h1oa2 49 GYIIQQLTYFHN-----GTRVNTLMNQIAKNITVAQMKDVAAYLS 88 (90)
T ss_dssp HHHHHHHHHHHH-----TSSCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-----CCcCchHHHHHHHhCCHHHHHHHHHHHH
Confidence 356677766543 2455556667788899999999888874
Done!