RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4941
         (172 letters)



>d2i71a1 e.72.1.1 (A:1-377) Hypothetical protein SSO1389 {Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 377

 Score = 24.9 bits (54), Expect = 5.6
 Identities = 14/73 (19%), Positives = 25/73 (34%), Gaps = 1/73 (1%)

Query: 57  HITSLLLGLSGRLARAENALIGLREDHCDRKSLEEKRDKLASQLEEAKELKENIDRRSTN 116
               +   LS  L    +   G  +    R   E   DK+   + E  E+ +    +  +
Sbjct: 263 VYKDMKYALSHALFYVISRFSGNVDLDTLRHYAETYADKVTRAIIE-NEVDKIEKYQMGS 321

Query: 117 VATLLRKYLSSEE 129
              LL +Y+  E 
Sbjct: 322 ERKLLGEYMKVEG 334


>d1ovma1 c.31.1.3 (A:181-341) Indole-3-pyruvate decarboxylase
           {Enterobacter cloacae [TaxId: 550]}
          Length = 161

 Score = 24.7 bits (53), Expect = 6.3
 Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 1/31 (3%)

Query: 74  NALIGLREDHCDRKSLEEKRDKLASQLEEAK 104
           NAL   ++ H D   L+  RD   ++L  +K
Sbjct: 1   NALT-HKQAHADSACLKAFRDAAENKLAMSK 30


>d2ga9d1 e.69.1.1 (D:12-479) Poly(A) polymerase catalytic subunit,
           PAPL {Vaccinia virus [TaxId: 10245]}
          Length = 468

 Score = 24.8 bits (54), Expect = 7.4
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 16/65 (24%)

Query: 95  KLASQLEEAKELKENIDRRSTNVATLLRKYLSSEEFADYNHFIN---------MKAKLLV 145
           K+ SQ++  ++L ++ ++ +  +AT+L       E+  Y H I          MK  +  
Sbjct: 276 KMFSQIDRLEDLSKDPEKFNARMATML-------EYVRYTHGIVFDGKRNNMPMKCIIDE 328

Query: 146 DAREI 150
           + R +
Sbjct: 329 NNRIV 333


>d1xtta1 c.61.1.1 (A:2-216) Uracil PRTase, Upp {Sulfolobus
           solfataricus [TaxId: 2287]}
          Length = 215

 Score = 24.2 bits (52), Expect = 8.2
 Identities = 21/103 (20%), Positives = 29/103 (28%), Gaps = 19/103 (18%)

Query: 7   KLTLLRSVQVDLNEESRGNDRLGEALATRLASEARPAE-----------TAKYKLHVQEV 55
            LT LR    D     +   RLG  L     S     E           T    +     
Sbjct: 13  ILTQLRDKYTDQINFRKNLVRLGRILGYE-ISNTLDYEIVEVETPLGVKTKGVDITDLNN 71

Query: 56  GHITSLLL-------GLSGRLARAENALIGLREDHCDRKSLEE 91
             I ++L        GL     +A   +IG      D K + +
Sbjct: 72  IVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPK 114


>d1rzna_ c.52.1.28 (A:) Recombination protein U (RecU)/PBP related
           factor A (PrfA) {Bacillus subtilis [TaxId: 1423]}
          Length = 165

 Score = 23.9 bits (52), Expect = 8.9
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 4/52 (7%)

Query: 103 AKELKENIDRRSTNVATLLRKYLSSEEFADYNHFINMKAKLLVDAREISDKI 154
           A +L    DR+  N     RK +  +E  +  + I++     +D   I +++
Sbjct: 116 ADKLFYFWDRKEKNG----RKSIRKDELEETAYPISLGYAPRIDYISIIEQL 163


>d1y1oa_ c.52.1.28 (A:) Recombination protein U (RecU)/PBP related
           factor A (PrfA) {Bacillus stearothermophilus [TaxId:
           1422]}
          Length = 168

 Score = 23.9 bits (52), Expect = 9.7
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 122 RKYLSSEEFADYNHFINMKAKLLVDAREISDKI 154
           RK +  +E   + H I +  +  +D   + D +
Sbjct: 134 RKSIPKQEIERHGHSIPLGYQPRLDYISVVDNV 166


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.128    0.330 

Gapped
Lambda     K      H
   0.267   0.0606    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 542,621
Number of extensions: 22954
Number of successful extensions: 78
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 19
Length of query: 172
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 93
Effective length of database: 1,322,926
Effective search space: 123032118
Effective search space used: 123032118
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.3 bits)