BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4946
(165 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P84060|DTNB_RAT Dystrobrevin beta OS=Rattus norvegicus GN=Dtnb PE=2 SV=2
Length = 654
Score = 139 bits (350), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 71/134 (52%), Positives = 100/134 (74%), Gaps = 1/134 (0%)
Query: 33 SRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIA 92
SRLD+EH+LIARYAA+LAAE ++ + P++ S + D ++ QR+L+++LE+KNREI++EI
Sbjct: 396 SRLDEEHRLIARYAARLAAEAGNMTRPPTDASFNFDANKQQRQLIAELENKNREILQEIQ 455
Query: 93 RLRRQQELEG-VCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151
RLR + E + NP L++ELR LR RKDELE +++LQ+SRR LMVQLEGLM+
Sbjct: 456 RLRLEHEQASQPTPEKAQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQLEGLMK 515
Query: 152 LLKTHQGTSPNSSP 165
LLK SP++SP
Sbjct: 516 LLKAQATGSPHTSP 529
>sp|O70585|DTNB_MOUSE Dystrobrevin beta OS=Mus musculus GN=Dtnb PE=1 SV=3
Length = 659
Score = 139 bits (349), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 71/134 (52%), Positives = 100/134 (74%), Gaps = 1/134 (0%)
Query: 33 SRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIA 92
SRLD+EH+LIARYAA+LAAE ++ + P++ S + D ++ QR+L+++LE+KNREI++EI
Sbjct: 396 SRLDEEHRLIARYAARLAAEAGNMTRPPTDASFNFDANKQQRQLIAELENKNREILQEIQ 455
Query: 93 RLRRQQELEG-VCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151
RLR + E + NP L++ELR LR RKDELE +++LQ+SRR LMVQLEGLM+
Sbjct: 456 RLRLEHEQASQPTPEKAQQNPMLLAELRLLRQRKDELEQRMSALQESRRELMVQLEGLMK 515
Query: 152 LLKTHQGTSPNSSP 165
LLK SP++SP
Sbjct: 516 LLKAQATGSPHTSP 529
>sp|Q9Y4J8|DTNA_HUMAN Dystrobrevin alpha OS=Homo sapiens GN=DTNA PE=1 SV=2
Length = 743
Score = 132 bits (331), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 75/142 (52%), Positives = 103/142 (72%), Gaps = 6/142 (4%)
Query: 30 LEAS-RLDDEHKLIARYAAKLAAENRSVG----KAPSEGSLSLDTSRAQRELVSQLESKN 84
LE+S RLD+EH+LIARYAA+LAAE+ S ++ + S ++D ++ QR+L+++LE+KN
Sbjct: 424 LESSNRLDEEHRLIARYAARLAAESSSSQPPQQRSAPDISFTIDANKQQRQLIAELENKN 483
Query: 85 REIMREIARLRRQQELEG-VCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLM 143
REI++EI RLR + E + NP L++ELR LR RKDELE +++LQ+SRR LM
Sbjct: 484 REILQEIQRLRLEHEQASQPTPEKAQQNPTLLAELRLLRQRKDELEQRMSALQESRRELM 543
Query: 144 VQLEGLMRLLKTHQGTSPNSSP 165
VQLEGLM+LLKT SP SSP
Sbjct: 544 VQLEGLMKLLKTQGAGSPRSSP 565
>sp|O60941|DTNB_HUMAN Dystrobrevin beta OS=Homo sapiens GN=DTNB PE=1 SV=1
Length = 627
Score = 130 bits (326), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 73/141 (51%), Positives = 101/141 (71%), Gaps = 8/141 (5%)
Query: 33 SRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIA 92
SRLD+EH+LIARYAA+LAAE +V + P++ S + D ++ QR+L+++LE+KNREI++EI
Sbjct: 396 SRLDEEHRLIARYAARLAAEAGNVTRPPTDLSFNFDANKQQRQLIAELENKNREILQEIQ 455
Query: 93 RLRRQQELEG-VCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151
RLR + E + NP L++ELR LR RKDELE +++LQ+SRR LMVQLE LM+
Sbjct: 456 RLRLEHEQASQPTPEKAQQNPTLLAELRLLRQRKDELEQRMSALQESRRELMVQLEELMK 515
Query: 152 LLKTH------QGT-SPNSSP 165
LLK Q T SP++SP
Sbjct: 516 LLKEEEQKQAAQATGSPHTSP 536
>sp|Q9D2N4|DTNA_MOUSE Dystrobrevin alpha OS=Mus musculus GN=Dtna PE=1 SV=2
Length = 746
Score = 125 bits (315), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 75/149 (50%), Positives = 104/149 (69%), Gaps = 13/149 (8%)
Query: 30 LEAS-RLDDEHKLIARYAAKLAAENRSVG----KAPSEGSLSLDTSRAQRELVSQLESKN 84
LE+S RLD+EH+LIARYAA+LAAE+ S ++ + S ++D ++ QR+L+++LE+KN
Sbjct: 421 LESSNRLDEEHRLIARYAARLAAESSSSQPTQQRSAPDISFTIDANKQQRQLIAELENKN 480
Query: 85 REIMREIARLRRQQELEG-VCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLM 143
REI++EI RLR + E + NP L++ELR LR RKDELE +++LQ+SRR LM
Sbjct: 481 REILQEIQRLRVEHEQASQPTPEKAQQNPTLLAELRLLRQRKDELEQRMSALQESRRELM 540
Query: 144 VQLEGLMRLLK-------THQGTSPNSSP 165
VQLEGLM+LLK T +SP SSP
Sbjct: 541 VQLEGLMKLLKEEELKQGTQGASSPRSSP 569
>sp|Q9Y048|DTN1_CAEEL Dystrobrevin-1 OS=Caenorhabditis elegans GN=dyb-1 PE=1 SV=1
Length = 590
Score = 70.1 bits (170), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 73/142 (51%), Gaps = 24/142 (16%)
Query: 16 TSTARSPGRYNMGTLEASRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRA--Q 73
TS PG+ + G + +DDEHKLIARYAAKL+ P S+++S +
Sbjct: 388 TSPVLLPGQASHGGV----IDDEHKLIARYAAKLSGR----ADYPLSNGRSMNSSMVGDE 439
Query: 74 RELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLA 133
R L++QLE +N ++RE+ARL Q + L LR RK ELE +
Sbjct: 440 RTLIAQLEEENSMMVREMARLESQTTSD--------------DGLAGLRDRKMELEEKMF 485
Query: 134 SLQDSRRHLMVQLEGLMRLLKT 155
+Q RR LM+QLE LM L T
Sbjct: 486 EMQQRRRELMMQLEHLMAQLNT 507
>sp|Q5GN48|DMD_PIG Dystrophin OS=Sus scrofa GN=DMD PE=1 SV=1
Length = 3674
Score = 46.6 bits (109), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 73/138 (52%), Gaps = 14/138 (10%)
Query: 35 LDDEHKLIARYAAKLAAENR-SVGKAPSEGSLSLDTS-RAQRE-LVSQLESKNREIMREI 91
+DDEH LI Y L ++ S ++P++ +SL++ R + E +++ LE +NR + E
Sbjct: 3454 IDDEHLLIQHYCQSLNQDSPLSQPRSPAQILISLESEERGELERILADLEEENRNLQAEY 3513
Query: 92 ARLRRQQELEGV--CASGFEDNPA---------LMSELRALRMRKDELESHLASLQDSRR 140
RL++Q E +G+ S E P L++E + LR K LE+ + +L+D +
Sbjct: 3514 DRLKQQHEHKGLSPLPSPPEMMPTSPQSPRDAELIAEAKLLRQHKGRLEARMQTLEDHNK 3573
Query: 141 HLMVQLEGLMRLLKTHQG 158
L QL L +LL+ Q
Sbjct: 3574 QLESQLHRLRQLLEQPQA 3591
>sp|Q0KI50|DMDD_DROME Dystrophin, isoform D OS=Drosophila melanogaster GN=Dys PE=1 SV=1
Length = 1854
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 24/139 (17%)
Query: 36 DDEHKLIARYAAKL-AAENRSVGKAPSEGSLSLDTSRAQRE----LVSQLESKNREIMRE 90
DDEH+LIA+Y L N S K+P + ++D QRE ++ LE +N + E
Sbjct: 1608 DDEHQLIAQYCQALPGTSNGSAPKSPVQVMAAMDAE--QREELEAIIRDLEEENANLQAE 1665
Query: 91 IARLRRQQE----------------LEGVCASGFEDNPALMSELRALRMRKDELESHLAS 134
+L +++ + G+ G E +M+E + LR K LE+ +
Sbjct: 1666 YQQLCSKEQSGMPEDSNGMQHSSSSMTGLSGQG-EQGQDMMAEAKLLRQHKGRLEARMQI 1724
Query: 135 LQDSRRHLMVQLEGLMRLL 153
L+D R L QL+ L +LL
Sbjct: 1725 LEDHNRQLEAQLQRLRQLL 1743
>sp|O97592|DMD_CANFA Dystrophin OS=Canis familiaris GN=DMD PE=2 SV=1
Length = 3680
Score = 45.8 bits (107), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 35 LDDEHKLIARYAAKLAAENR-SVGKAPSEGSLSLDTS-RAQRE-LVSQLESKNREIMREI 91
+DDEH LI Y L E+ S ++P++ +SL++ R + E +++ LE +NR + E
Sbjct: 3460 IDDEHLLIQHYWRSLNQESPLSQPRSPAQILISLESEERGELERILADLEGRNRNLQAEY 3519
Query: 92 ARLRRQQELEGV--CASGFEDNPA---------LMSELRALRMRKDELESHLASLQDSRR 140
RL++Q E +G+ S E P L++E + LR K LE+ + L+D +
Sbjct: 3520 DRLKQQHEHKGLSPLPSPPEMMPTSPQSPRDAELIAEAKLLRQHKGRLEARMQILEDHNK 3579
Query: 141 HLMVQLEGLMRLLKTHQG 158
L QL L +LL+ Q
Sbjct: 3580 QLESQLHRLRQLLEQPQA 3597
>sp|Q7YU29|DMDE_DROME Dystrophin, isoform E OS=Drosophila melanogaster GN=Dys PE=1 SV=1
Length = 1051
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 24/139 (17%)
Query: 36 DDEHKLIARYAAKL-AAENRSVGKAPSEGSLSLDTSRAQRE----LVSQLESKNREIMRE 90
DDEH+LIA+Y L N S K+P + ++D QRE ++ LE +N + E
Sbjct: 805 DDEHQLIAQYCQALPGTSNGSAPKSPVQVMAAMDAE--QREELEAIIRDLEEENANLQAE 862
Query: 91 IARLRRQQE----------------LEGVCASGFEDNPALMSELRALRMRKDELESHLAS 134
+L +++ + G+ G E +M+E + LR K LE+ +
Sbjct: 863 YQQLCSKEQSGMPEDSNGMQHSSSSMTGLSGQG-EQGQDMMAEAKLLRQHKGRLEARMQI 921
Query: 135 LQDSRRHLMVQLEGLMRLL 153
L+D R L QL+ L +LL
Sbjct: 922 LEDHNRQLEAQLQRLRQLL 940
>sp|Q9VDW3|DMDB_DROME Dystrophin, isoform B OS=Drosophila melanogaster GN=Dys PE=1 SV=3
Length = 1669
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 24/139 (17%)
Query: 36 DDEHKLIARYAAKL-AAENRSVGKAPSEGSLSLDTSRAQRE----LVSQLESKNREIMRE 90
DDEH+LIA+Y L N S K+P + ++D QRE ++ LE +N + E
Sbjct: 1423 DDEHQLIAQYCQALPGTSNGSAPKSPVQVMAAMDAE--QREELEAIIRDLEEENANLQAE 1480
Query: 91 IARLRRQQE----------------LEGVCASGFEDNPALMSELRALRMRKDELESHLAS 134
+L +++ + G+ G E +M+E + LR K LE+ +
Sbjct: 1481 YQQLCSKEQSGMPEDSNGMQHSSSSMTGLSGQG-EQGQDMMAEAKLLRQHKGRLEARMQI 1539
Query: 135 LQDSRRHLMVQLEGLMRLL 153
L+D R L QL+ L +LL
Sbjct: 1540 LEDHNRQLEAQLQRLRQLL 1558
>sp|P11533|DMD_CHICK Dystrophin OS=Gallus gallus GN=DMD PE=2 SV=1
Length = 3660
Score = 45.4 bits (106), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/168 (28%), Positives = 82/168 (48%), Gaps = 15/168 (8%)
Query: 6 FDVSSMDSRSTSTARSPGRYNMGTLEASR-LDDEHKLIARYAAKLAAENR-SVGKAPSEG 63
+ +DS S G Y ++ + +DDEH LI Y L E+ S ++P++
Sbjct: 3410 INFWPVDSALAEMENSNGSYLNDSISPNESIDDEHLLIQHYCQSLNQESPLSQPRSPAQI 3469
Query: 64 SLSLDTS-RAQRE-LVSQLESKNREIMREIARLRRQQELEGV--CASGFEDNPA------ 113
+SL++ R + E +++ LE +NR + E RL++Q + +G+ S E P
Sbjct: 3470 LISLESEERGELERILADLEEENRNLQAEYDRLKQQHDHKGLSPLPSPPEMMPVSPQSPR 3529
Query: 114 ---LMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQG 158
L++E + LR K LE+ + L+D + L QL L +LL+ Q
Sbjct: 3530 DAELIAEAKLLRQHKGRLEARMQILEDHNKQLESQLHRLRQLLEQPQA 3577
>sp|P11532|DMD_HUMAN Dystrophin OS=Homo sapiens GN=DMD PE=1 SV=3
Length = 3685
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 35 LDDEHKLIARYAAKLAAENR-SVGKAPSEGSLSLDTS-RAQRE-LVSQLESKNREIMREI 91
+DDEH LI Y L ++ S ++P++ +SL++ R + E +++ LE +NR + E
Sbjct: 3465 IDDEHLLIQHYCQSLNQDSPLSQPRSPAQILISLESEERGELERILADLEEENRNLQAEY 3524
Query: 92 ARLRRQQELEGV--CASGFEDNPA---------LMSELRALRMRKDELESHLASLQDSRR 140
RL++Q E +G+ S E P L++E + LR K LE+ + L+D +
Sbjct: 3525 DRLKQQHEHKGLSPLPSPPEMMPTSPQSPRDAELIAEAKLLRQHKGRLEARMQILEDHNK 3584
Query: 141 HLMVQLEGLMRLLKTHQG 158
L QL L +LL+ Q
Sbjct: 3585 QLESQLHRLRQLLEQPQA 3602
>sp|P11531|DMD_MOUSE Dystrophin OS=Mus musculus GN=Dmd PE=1 SV=3
Length = 3678
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 14/138 (10%)
Query: 35 LDDEHKLIARYAAKLAAENR-SVGKAPSEGSLSLDTS-RAQRE-LVSQLESKNREIMREI 91
+DDEH LI Y L ++ S ++P++ +SL++ R + E +++ LE +NR + E
Sbjct: 3458 IDDEHLLIQHYCQSLNQDSPLSQPRSPAQILISLESEERGELERILADLEEENRNLQAEY 3517
Query: 92 ARLRRQQELEGV--CASGFEDNPA---------LMSELRALRMRKDELESHLASLQDSRR 140
RL++Q E +G+ S E P L++E + LR K LE+ + L+D +
Sbjct: 3518 DRLKQQHEHKGLSPLPSPPEMMPTSPQSPRDAELIAEAKLLRQHKGRLEARMQILEDHNK 3577
Query: 141 HLMVQLEGLMRLLKTHQG 158
L QL L +LL+ Q
Sbjct: 3578 QLESQLHRLRQLLEQPQA 3595
>sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/F/G/H OS=Drosophila melanogaster GN=Dys PE=1
SV=3
Length = 3598
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 65/139 (46%), Gaps = 24/139 (17%)
Query: 36 DDEHKLIARYAAKL-AAENRSVGKAPSEGSLSLDTSRAQRE----LVSQLESKNREIMRE 90
DDEH+LIA+Y L N S K+P + ++D QRE ++ LE +N + E
Sbjct: 3251 DDEHQLIAQYCQALPGTSNGSAPKSPVQVMAAMDAE--QREELEAIIRDLEEENANLQAE 3308
Query: 91 IARLRRQQE----------------LEGVCASGFEDNPALMSELRALRMRKDELESHLAS 134
+L +++ + G+ G E +M+E + LR K LE+ +
Sbjct: 3309 YQQLCSKEQSGMPEDSNGMQHSSSSMTGLSGQG-EQGQDMMAEAKLLRQHKGRLEARMQI 3367
Query: 135 LQDSRRHLMVQLEGLMRLL 153
L+D R L QL+ L +LL
Sbjct: 3368 LEDHNRQLEAQLQRLRQLL 3386
>sp|P46939|UTRO_HUMAN Utrophin OS=Homo sapiens GN=UTRN PE=1 SV=2
Length = 3433
Score = 39.7 bits (91), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 69/150 (46%), Gaps = 19/150 (12%)
Query: 35 LDDEHKLIARYAAKLAAEN-RSVGKAPSE--GSLSLDTSRAQRELVSQLESKNREIMREI 91
++DEH LI +Y L E+ S ++P++ S+ + +++ LE + R + E
Sbjct: 3222 VEDEHALIQQYCQTLGGESPVSQPQSPAQILKSVEREERGELERIIADLEEEQRNLQVEY 3281
Query: 92 ARLRRQQELEG----------VCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRH 141
+L+ Q G + ++ L++E + LR K LE+ + L+D +
Sbjct: 3282 EQLKDQHLRRGLPVGSPPESIISPHHTSEDSELIAEAKLLRQHKGRLEARMQILEDHNKQ 3341
Query: 142 LMVQLEGLMRLLKTHQ------GTSPNSSP 165
L QL L +LL+ + G SP +SP
Sbjct: 3342 LESQLHRLRQLLEQPESDSRINGVSPWASP 3371
>sp|Q13474|DRP2_HUMAN Dystrophin-related protein 2 OS=Homo sapiens GN=DRP2 PE=2 SV=2
Length = 957
Score = 35.4 bits (80), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 14/117 (11%)
Query: 37 DEHKLIARYAAKLAAENRSVGK-APSEGSLSLDTSRAQRELVSQLESKNREIMREIARLR 95
DE + + R+++ + + G+ AP S++ ++ +++++ LE +NR + E+ RL+
Sbjct: 750 DEDQYLLRHSSPITDREPAFGQQAPC--SVATESKGELQKILAHLEDENRILQGELRRLK 807
Query: 96 RQQELEGVCASGFED----------NPALMSELRALRMRKDELESHLASLQDSRRHL 142
Q E E A D N L++E R LR K LE+ + L+D + L
Sbjct: 808 WQHE-EAAEAPSLADGSTEAATDHRNEELLAEARILRQHKSRLETRMQILEDHNKQL 863
>sp|Q05AA6|DRP2_MOUSE Dystrophin-related protein 2 OS=Mus musculus GN=Drp2 PE=1 SV=1
Length = 957
Score = 35.4 bits (80), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 59/116 (50%), Gaps = 12/116 (10%)
Query: 37 DEHKLIARYAAKLAAENRSVGK-APSEGSLSLDTSRAQRELVSQLESKNREIMREIARLR 95
DE + + R+++ + + G+ AP S++ ++ ++++ LE +NR + E+ RL+
Sbjct: 750 DEDQYLLRHSSPITDREPAFGQQAPC--SMATESKGELEKILAHLEDENRILQGELRRLK 807
Query: 96 RQQE--------LEGVC-ASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHL 142
Q E +EG A+ N L++E R LR K LE+ + L+D + L
Sbjct: 808 WQHEEAAEAPTLVEGSAEATPDHRNEELLAEARILRQHKSRLETRMQILEDHNKQL 863
>sp|Q9EPA0|DRP2_RAT Dystrophin-related protein 2 OS=Rattus norvegicus GN=Drp2 PE=1 SV=1
Length = 957
Score = 35.0 bits (79), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 58/117 (49%), Gaps = 14/117 (11%)
Query: 37 DEHKLIARYAAKLAAENRSVGK-APSEGSLSLDTSRAQRELVSQLESKNREIMREIARLR 95
DE + + R+++ + + G+ AP S++ ++ ++++ LE +NR + E+ RL+
Sbjct: 750 DEDQYLLRHSSPITDREPAFGQQAPC--SMATESKGELEKILAHLEDENRILQGELRRLK 807
Query: 96 RQQELEGVCASGFED----------NPALMSELRALRMRKDELESHLASLQDSRRHL 142
Q E E V A + N L++E R LR K LE+ + L+D + L
Sbjct: 808 WQHE-EAVEAPTLAEGSAEATPDHRNEELLAEARILRQHKSRLETRMQILEDHNKQL 863
>sp|Q3UHU5|SOGA2_MOUSE Protein SOGA2 OS=Mus musculus GN=Soga2 PE=1 SV=1
Length = 1945
Score = 33.9 bits (76), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 38/75 (50%), Gaps = 5/75 (6%)
Query: 74 RELVSQLESKNREIMREIARLRRQQELE-GVCASGFEDNPA----LMSELRALRMRKDEL 128
R +S++E NR++ E+++ + + E G G PA L EL++ R++ DEL
Sbjct: 641 RRSISEIEDHNRQLTHELSKFKFEPHQESGWLGDGVSKGPAASVPLQEELKSARLQIDEL 700
Query: 129 ESHLASLQDSRRHLM 143
+ LQ R L+
Sbjct: 701 SGKVLKLQCENRLLL 715
>sp|Q9LXX6|EXOC6_ARATH Probable exocyst complex component 6 OS=Arabidopsis thaliana
GN=At3g56640 PE=3 SV=2
Length = 790
Score = 32.3 bits (72), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 31/47 (65%), Gaps = 1/47 (2%)
Query: 88 MREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLAS 134
++ +AR +++ E+E +C + +E+ + ELR + + +EL+S LAS
Sbjct: 53 LKNVAR-KKEAEIEDLCKTHYEEFIVAVDELRGVLVDAEELKSDLAS 98
>sp|Q554L2|Y4613_DICDI Probable inactive serine/threonine-protein kinase DDB_G0274613
OS=Dictyostelium discoideum GN=DDB_G0274613 PE=3 SV=1
Length = 831
Score = 31.2 bits (69), Expect = 2.7, Method: Composition-based stats.
Identities = 23/106 (21%), Positives = 54/106 (50%), Gaps = 8/106 (7%)
Query: 67 LDTSRAQRELVSQLESKNREIMREIARLRRQ--------QELEGVCASGFEDNPALMSEL 118
L+ +R + +++L N+++ ++++ + +E++ G++ N L S +
Sbjct: 252 LNNTRLKDLQIAKLSDANQQLGTSLSKIEAECEHFKKLYKEIQEDANGGYQKNKNLESAI 311
Query: 119 RALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQGTSPNSS 164
+L + +S + SL ++R L +LE + L + +GTS +SS
Sbjct: 312 ASLNIELSRSKSVIDSLNTNKRTLEKELEEMKLLYQFGRGTSISSS 357
>sp|Q6NI37|EX7L_CORDI Exodeoxyribonuclease 7 large subunit OS=Corynebacterium diphtheriae
(strain ATCC 700971 / NCTC 13129 / Biotype gravis)
GN=xseA PE=3 SV=1
Length = 413
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 6/72 (8%)
Query: 72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESH 131
A+R+L+++L S++ +R RQQ + PAL +RA+ + ++E+
Sbjct: 273 AERQLIAELRSRSAAALRGWVHKERQQ------LAAVRSRPALADPVRAITLHREEIARS 326
Query: 132 LASLQDSRRHLM 143
++S++ R+++
Sbjct: 327 ISSIRRDMRYML 338
>sp|Q80XP8|FA76B_MOUSE Protein FAM76B OS=Mus musculus GN=Fam76b PE=2 SV=1
Length = 339
Score = 30.8 bits (68), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 71 RAQRELVSQLESKNREIMREIARLRR 96
+A +E V QL++KNRE+++++A L +
Sbjct: 300 KAHKETVEQLQAKNRELLKQVAALSK 325
>sp|Q5HYJ3|FA76B_HUMAN Protein FAM76B OS=Homo sapiens GN=FAM76B PE=1 SV=3
Length = 339
Score = 30.4 bits (67), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 21/26 (80%)
Query: 71 RAQRELVSQLESKNREIMREIARLRR 96
+A +E V QL++KNRE+++++A L +
Sbjct: 300 KAHKETVEQLQAKNRELLKQVAALSK 325
>sp|Q6BWW6|BRE1_DEBHA E3 ubiquitin-protein ligase BRE1 OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=BRE1 PE=3 SV=2
Length = 691
Score = 30.0 bits (66), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 11/110 (10%)
Query: 29 TLEASRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIM 88
T+E ++ D ++ R L++EN+ + ++ +ELVS+L + +
Sbjct: 475 TIEKTKADQKYFASMRLKDSLSSENKILKTQINKS----------QELVSKLNDLEKSYL 524
Query: 89 REIARLRR-QQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQD 137
+I L + + + + S ++N L LRA+ +RK LE L+ ++D
Sbjct: 525 DKIEILTKSNNDFKIIRQSALQENSKLQESLRAIDVRKASLEKELSGMKD 574
>sp|Q9VNI3|U609_DROME UPF0609 protein CG1218 OS=Drosophila melanogaster GN=CG1218 PE=1
SV=2
Length = 449
Score = 30.0 bits (66), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 50 AAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNR-EIMREIARLRRQQELEGVCAS 106
A+ V K ++GS +T +E +S + KN EI+ + RL Q+E + +C S
Sbjct: 73 ASSTEMVNKDTAKGSYEAETEELHKEAMSNISGKNYMEILEKRIRLSVQKEYDNLCES 130
>sp|P22311|PU91_SCICO Puff II/9-1 protein OS=Sciara coprophila GN=II/9-1 PE=2 SV=1
Length = 286
Score = 30.0 bits (66), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 32/58 (55%)
Query: 82 SKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSR 139
SK+ I+R I +R + LEG+ + +DN L E ALR + EL + LA + +R
Sbjct: 39 SKDDLILRLITCTQRNENLEGIITAIKKDNDFLNKENDALRAQNCELTAQLAKEKKAR 96
>sp|O59795|CASP_SCHPO Protein CASP OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=coy1 PE=3 SV=1
Length = 633
Score = 29.6 bits (65), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 60/117 (51%), Gaps = 10/117 (8%)
Query: 33 SRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIA 92
S LDD +K+I A++A ++ + S GS D S Q++ + ++S N+++ E+
Sbjct: 241 SELDDANKIIVELQAEIAVLKQNTKEQKS-GSSQDDLSNQQKQQLDFMDSLNKKLSTELE 299
Query: 93 RLRR--QQELEGVCASGFEDNPALMSELRALRMRKDE---LESHLASLQDSRRHLMV 144
++ ++E+E CA+ L +E++ R K+E L + + + +R L V
Sbjct: 300 SIKEASRKEMETHCATI----QTLENEVKEARKVKEESLTLANKFSDYDEIKRELSV 352
>sp|Q3V0F0|RIMB3_MOUSE RIMS-binding protein 3 OS=Mus musculus GN=Rimbp3 PE=2 SV=1
Length = 1490
Score = 29.6 bits (65), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 45/99 (45%), Gaps = 18/99 (18%)
Query: 28 GTLEASRLDDE------HKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLE 81
G L+A L E H L AR AA L + + P EG+ + AQ +S L+
Sbjct: 344 GALQAKDLQIEALRRECHLLQARIAADLGSSSH-----PEEGA-----TCAQWCNISDLD 393
Query: 82 SKNREIMREIARLRRQQELEGVCASGFED--NPALMSEL 118
RE RE+ RL+RQ L A + D P+ SE+
Sbjct: 394 RLQRESQREVLRLQRQLTLHQSKAGAWADAGRPSTPSEI 432
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.125 0.328
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,931,905
Number of Sequences: 539616
Number of extensions: 1775516
Number of successful extensions: 7246
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 268
Number of HSP's that attempted gapping in prelim test: 6961
Number of HSP's gapped (non-prelim): 632
length of query: 165
length of database: 191,569,459
effective HSP length: 109
effective length of query: 56
effective length of database: 132,751,315
effective search space: 7434073640
effective search space used: 7434073640
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)