Query psy4946
Match_columns 165
No_of_seqs 87 out of 110
Neff 3.9
Searched_HMMs 46136
Date Fri Aug 16 21:55:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4946.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4946hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4286|consensus 99.9 1.1E-25 2.4E-30 214.0 10.0 128 30-157 741-882 (966)
2 KOG4301|consensus 99.5 3.3E-13 7.1E-18 121.1 11.9 135 31-165 98-243 (434)
3 KOG4301|consensus 99.4 8.9E-13 1.9E-17 118.4 7.0 67 32-98 368-434 (434)
4 PF11365 DUF3166: Protein of u 93.4 0.27 5.8E-06 37.3 5.9 70 71-140 18-93 (96)
5 KOG4005|consensus 91.5 0.71 1.5E-05 40.8 6.8 53 72-130 94-146 (292)
6 PF08614 ATG16: Autophagy prot 90.4 2.6 5.7E-05 34.2 8.8 73 72-153 113-185 (194)
7 TIGR03752 conj_TIGR03752 integ 89.1 2 4.3E-05 40.7 8.0 72 71-154 69-140 (472)
8 PF11068 YlqD: YlqD protein; 88.8 7.4 0.00016 30.7 10.0 69 71-152 16-89 (131)
9 PF03980 Nnf1: Nnf1 ; InterPr 87.5 8.6 0.00019 28.3 9.2 42 110-151 64-108 (109)
10 KOG4001|consensus 87.1 4.7 0.0001 35.2 8.4 65 72-150 189-255 (259)
11 PF02403 Seryl_tRNA_N: Seryl-t 86.9 3.8 8.2E-05 29.9 6.9 67 77-143 31-101 (108)
12 PF03961 DUF342: Protein of un 86.5 9.4 0.0002 34.8 10.6 79 71-149 330-408 (451)
13 PRK13729 conjugal transfer pil 85.6 3.9 8.4E-05 38.8 7.8 62 74-155 68-129 (475)
14 PF11932 DUF3450: Protein of u 85.1 12 0.00026 31.4 9.8 78 72-155 39-116 (251)
15 PF12711 Kinesin-relat_1: Kine 84.1 5.5 0.00012 29.7 6.6 21 79-99 21-41 (86)
16 PF14662 CCDC155: Coiled-coil 83.8 14 0.0003 31.4 9.6 86 70-155 24-127 (193)
17 PRK10884 SH3 domain-containing 83.5 15 0.00032 31.0 9.7 76 72-150 90-166 (206)
18 PF05667 DUF812: Protein of un 83.4 7.4 0.00016 37.6 8.8 71 74-150 411-481 (594)
19 TIGR02894 DNA_bind_RsfA transc 83.0 11 0.00023 31.2 8.4 58 77-154 99-156 (161)
20 PLN02678 seryl-tRNA synthetase 82.5 6.8 0.00015 36.6 7.9 63 77-139 35-101 (448)
21 PF09726 Macoilin: Transmembra 82.1 11 0.00024 37.1 9.5 67 75-141 418-485 (697)
22 PF03962 Mnd1: Mnd1 family; I 81.8 20 0.00043 29.5 9.7 83 66-148 60-142 (188)
23 PF07106 TBPIP: Tat binding pr 81.7 24 0.00051 27.9 11.6 62 72-137 76-137 (169)
24 PF10211 Ax_dynein_light: Axon 81.7 13 0.00029 30.5 8.6 65 72-148 124-188 (189)
25 PF11365 DUF3166: Protein of u 81.6 4.4 9.6E-05 30.8 5.3 34 116-156 15-48 (96)
26 PF07106 TBPIP: Tat binding pr 81.2 16 0.00034 28.9 8.7 62 77-151 74-137 (169)
27 PF09744 Jnk-SapK_ap_N: JNK_SA 81.1 17 0.00036 29.6 8.9 69 72-149 47-115 (158)
28 PF09726 Macoilin: Transmembra 80.5 10 0.00022 37.3 8.7 78 71-154 442-519 (697)
29 PF08317 Spc7: Spc7 kinetochor 79.8 25 0.00054 30.9 10.2 23 76-98 178-200 (325)
30 KOG0249|consensus 79.1 7.4 0.00016 39.2 7.3 85 73-157 103-190 (916)
31 PF11559 ADIP: Afadin- and alp 78.7 28 0.00061 26.9 10.2 71 71-154 55-125 (151)
32 PF10205 KLRAQ: Predicted coil 78.0 24 0.00052 27.2 8.4 70 86-156 2-73 (102)
33 PRK05431 seryl-tRNA synthetase 77.8 12 0.00026 34.2 7.9 64 78-141 31-98 (425)
34 PF11180 DUF2968: Protein of u 77.3 24 0.00052 30.0 8.9 69 73-147 117-185 (192)
35 PLN02320 seryl-tRNA synthetase 77.3 12 0.00026 35.6 7.9 62 77-138 95-159 (502)
36 PF07716 bZIP_2: Basic region 76.0 6.5 0.00014 25.9 4.3 26 72-97 29-54 (54)
37 PF04340 DUF484: Protein of un 75.5 4.8 0.0001 33.1 4.3 42 110-151 24-68 (225)
38 PF06785 UPF0242: Uncharacteri 75.2 32 0.00069 32.0 9.7 32 123-154 127-158 (401)
39 PF08287 DASH_Spc19: Spc19; I 75.1 22 0.00048 28.6 7.9 63 72-134 65-152 (153)
40 TIGR00414 serS seryl-tRNA synt 74.8 17 0.00036 33.3 7.9 66 77-142 32-102 (418)
41 PF07716 bZIP_2: Basic region 74.2 10 0.00022 24.9 4.8 29 123-151 25-53 (54)
42 TIGR03752 conj_TIGR03752 integ 73.8 34 0.00073 32.6 9.8 69 72-157 60-136 (472)
43 smart00787 Spc7 Spc7 kinetocho 73.5 41 0.0009 29.9 9.9 23 74-96 143-165 (312)
44 PF05700 BCAS2: Breast carcino 72.5 55 0.0012 27.3 10.0 74 72-154 140-213 (221)
45 PRK15422 septal ring assembly 72.1 38 0.00082 25.1 9.5 48 76-136 5-59 (79)
46 COG1382 GimC Prefoldin, chaper 71.7 15 0.00033 28.9 6.1 43 110-155 67-109 (119)
47 PF04111 APG6: Autophagy prote 71.7 72 0.0016 28.2 11.3 28 72-99 47-74 (314)
48 PF08172 CASP_C: CASP C termin 70.9 18 0.0004 31.2 6.9 80 72-154 17-117 (248)
49 PF07888 CALCOCO1: Calcium bin 70.7 53 0.0011 31.9 10.5 23 74-96 156-178 (546)
50 KOG0249|consensus 69.5 32 0.00069 34.9 8.9 69 76-154 164-233 (916)
51 PF04012 PspA_IM30: PspA/IM30 69.3 60 0.0013 26.4 9.6 41 110-153 81-121 (221)
52 PF12808 Mto2_bdg: Micro-tubul 69.1 8.9 0.00019 26.2 3.7 25 72-96 26-50 (52)
53 PF06005 DUF904: Protein of un 68.7 28 0.0006 24.9 6.3 56 72-133 8-63 (72)
54 smart00338 BRLZ basic region l 68.4 18 0.00039 24.3 5.1 32 123-154 26-57 (65)
55 COG3074 Uncharacterized protei 67.5 47 0.001 24.5 8.6 58 76-153 5-73 (79)
56 COG2433 Uncharacterized conser 67.4 68 0.0015 31.8 10.6 81 72-152 426-510 (652)
57 COG5509 Uncharacterized small 67.3 7.3 0.00016 27.8 3.1 24 77-100 27-50 (65)
58 smart00340 HALZ homeobox assoc 67.3 10 0.00022 25.3 3.6 25 74-98 11-35 (44)
59 PRK11637 AmiB activator; Provi 67.3 96 0.0021 28.0 11.0 40 115-154 88-127 (428)
60 PRK15422 septal ring assembly 67.2 31 0.00068 25.5 6.5 56 67-135 17-72 (79)
61 PRK10963 hypothetical protein; 67.0 6.2 0.00013 32.9 3.1 21 118-138 46-66 (223)
62 PF01166 TSC22: TSC-22/dip/bun 66.7 14 0.0003 26.1 4.3 28 71-98 17-44 (59)
63 PRK09039 hypothetical protein; 65.9 86 0.0019 28.0 10.3 86 70-155 76-183 (343)
64 PF14197 Cep57_CLD_2: Centroso 65.5 45 0.00099 23.5 9.0 40 116-155 26-65 (69)
65 PF04111 APG6: Autophagy prote 64.4 1E+02 0.0022 27.2 11.1 27 73-99 62-88 (314)
66 PF13864 Enkurin: Calmodulin-b 63.9 23 0.0005 25.9 5.4 52 71-140 40-91 (98)
67 KOG0996|consensus 63.4 51 0.0011 34.9 9.3 42 113-154 960-1001(1293)
68 COG2433 Uncharacterized conser 63.3 72 0.0016 31.7 9.9 6 34-39 337-342 (652)
69 TIGR01069 mutS2 MutS2 family p 62.9 49 0.0011 32.8 8.8 26 71-96 511-536 (771)
70 PF00170 bZIP_1: bZIP transcri 62.6 29 0.00062 23.3 5.3 29 126-154 29-57 (64)
71 KOG0971|consensus 61.9 77 0.0017 33.2 10.1 48 112-159 493-550 (1243)
72 PF05557 MAD: Mitotic checkpoi 61.9 2.6 5.6E-05 40.6 0.0 24 76-99 258-281 (722)
73 KOG0977|consensus 61.2 33 0.00071 33.2 7.2 84 73-158 308-391 (546)
74 PRK00888 ftsB cell division pr 61.1 29 0.00062 26.1 5.5 35 117-151 28-62 (105)
75 KOG1853|consensus 61.0 75 0.0016 28.8 8.9 85 71-155 48-144 (333)
76 KOG4196|consensus 60.7 17 0.00037 29.3 4.4 20 79-98 78-97 (135)
77 PF02841 GBP_C: Guanylate-bind 60.1 1E+02 0.0022 26.5 9.5 31 122-152 228-258 (297)
78 PF03670 UPF0184: Uncharacteri 60.0 30 0.00065 25.8 5.3 31 118-148 42-72 (83)
79 PF04156 IncA: IncA protein; 59.9 85 0.0018 24.8 10.7 32 123-154 158-189 (191)
80 PRK00409 recombination and DNA 59.5 61 0.0013 32.2 8.9 76 70-151 515-595 (782)
81 PRK09413 IS2 repressor TnpA; R 59.1 21 0.00047 26.8 4.6 22 77-98 73-94 (121)
82 PF03980 Nnf1: Nnf1 ; InterPr 59.0 12 0.00026 27.6 3.1 26 71-96 83-108 (109)
83 TIGR02231 conserved hypothetic 57.4 1.6E+02 0.0035 27.2 11.6 86 72-157 75-172 (525)
84 PRK00888 ftsB cell division pr 57.3 16 0.00034 27.6 3.5 25 72-96 38-62 (105)
85 COG1579 Zn-ribbon protein, pos 57.1 98 0.0021 26.9 8.8 27 128-154 94-120 (239)
86 cd01106 HTH_TipAL-Mta Helix-Tu 57.0 36 0.00078 24.6 5.3 26 129-154 72-97 (103)
87 KOG2391|consensus 56.9 51 0.0011 30.5 7.3 59 74-145 217-275 (365)
88 KOG0612|consensus 56.6 90 0.0019 33.4 9.7 77 72-153 455-531 (1317)
89 PF07888 CALCOCO1: Calcium bin 56.3 1.1E+02 0.0024 29.7 9.8 27 114-140 211-237 (546)
90 PF04977 DivIC: Septum formati 56.1 45 0.00098 22.4 5.4 33 117-149 18-50 (80)
91 PF09738 DUF2051: Double stran 55.4 61 0.0013 28.9 7.5 22 135-156 152-173 (302)
92 PF14662 CCDC155: Coiled-coil 55.4 1.3E+02 0.0029 25.6 9.8 72 70-154 69-147 (193)
93 PRK10884 SH3 domain-containing 55.2 1.3E+02 0.0028 25.4 9.1 19 114-132 144-162 (206)
94 KOG2685|consensus 55.1 1.2E+02 0.0025 28.8 9.4 82 72-153 88-194 (421)
95 PF08826 DMPK_coil: DMPK coile 55.0 30 0.00066 24.2 4.4 28 72-99 29-56 (61)
96 PF00170 bZIP_1: bZIP transcri 54.6 29 0.00064 23.2 4.3 26 72-97 30-55 (64)
97 PF10186 Atg14: UV radiation r 54.3 1.2E+02 0.0026 24.9 10.5 17 76-92 28-44 (302)
98 COG4026 Uncharacterized protei 54.0 1.2E+02 0.0026 27.0 8.9 39 116-154 163-201 (290)
99 PF09738 DUF2051: Double stran 53.6 1.7E+02 0.0036 26.2 10.0 71 71-154 80-150 (302)
100 PF10174 Cast: RIM-binding pro 53.4 1.5E+02 0.0033 29.9 10.5 87 69-156 68-168 (775)
101 PRK11637 AmiB activator; Provi 53.3 1.7E+02 0.0037 26.3 11.0 38 116-153 82-119 (428)
102 PRK13922 rod shape-determining 53.3 25 0.00054 29.7 4.5 17 141-157 97-113 (276)
103 cd04769 HTH_MerR2 Helix-Turn-H 53.1 29 0.00064 25.8 4.4 33 119-151 82-114 (116)
104 PF12128 DUF3584: Protein of u 52.9 2.1E+02 0.0046 29.7 11.7 83 72-156 775-881 (1201)
105 PF06698 DUF1192: Protein of u 52.9 19 0.00042 25.1 3.1 21 79-99 25-45 (59)
106 PF11932 DUF3450: Protein of u 51.5 1.4E+02 0.0031 24.9 11.0 67 72-151 25-91 (251)
107 PRK01156 chromosome segregatio 51.5 2.5E+02 0.0054 27.6 11.9 79 76-154 424-507 (895)
108 PF08317 Spc7: Spc7 kinetochor 51.2 90 0.0019 27.4 7.8 25 74-98 148-172 (325)
109 smart00338 BRLZ basic region l 50.9 39 0.00085 22.6 4.4 27 72-98 30-56 (65)
110 PF11559 ADIP: Afadin- and alp 50.5 1.1E+02 0.0025 23.4 8.4 22 74-95 72-93 (151)
111 PF14282 FlxA: FlxA-like prote 49.1 1.1E+02 0.0023 23.0 6.9 59 74-155 18-76 (106)
112 PF09789 DUF2353: Uncharacteri 48.6 1.9E+02 0.0042 26.2 9.5 86 69-154 66-178 (319)
113 PF06632 XRCC4: DNA double-str 48.3 66 0.0014 29.2 6.6 43 77-132 139-181 (342)
114 PF10146 zf-C4H2: Zinc finger- 48.3 1.8E+02 0.0038 25.0 9.4 21 72-92 29-49 (230)
115 PF15070 GOLGA2L5: Putative go 48.3 1.5E+02 0.0033 28.9 9.5 44 113-163 33-76 (617)
116 PF00769 ERM: Ezrin/radixin/mo 48.2 1.7E+02 0.0038 24.9 9.5 20 76-95 34-53 (246)
117 PRK02224 chromosome segregatio 48.0 1.6E+02 0.0035 28.7 9.6 43 113-155 596-638 (880)
118 TIGR03185 DNA_S_dndD DNA sulfu 48.0 1.9E+02 0.004 27.7 9.9 7 76-82 187-193 (650)
119 PF15619 Lebercilin: Ciliary p 47.8 1.6E+02 0.0035 24.4 10.2 38 115-152 67-104 (194)
120 PF12072 DUF3552: Domain of un 46.7 1.6E+02 0.0035 24.1 9.9 20 75-94 64-83 (201)
121 PRK14127 cell division protein 46.5 1.1E+02 0.0024 23.6 6.7 50 77-133 46-102 (109)
122 TIGR02169 SMC_prok_A chromosom 46.3 2.8E+02 0.0061 27.3 11.0 34 117-150 890-923 (1164)
123 PRK13182 racA polar chromosome 46.3 40 0.00087 27.7 4.6 39 117-155 86-143 (175)
124 PF12718 Tropomyosin_1: Tropom 46.2 92 0.002 24.5 6.5 43 113-155 18-60 (143)
125 PRK03918 chromosome segregatio 45.8 2.9E+02 0.0063 26.8 11.4 76 76-151 406-487 (880)
126 KOG0288|consensus 45.5 1.2E+02 0.0026 28.9 8.0 72 73-145 53-126 (459)
127 KOG0977|consensus 45.2 1.3E+02 0.0028 29.3 8.4 43 113-155 152-194 (546)
128 KOG0804|consensus 45.2 1.3E+02 0.0027 29.1 8.1 70 72-154 379-452 (493)
129 PF04977 DivIC: Septum formati 44.5 38 0.00082 22.7 3.6 25 73-97 22-46 (80)
130 PF10168 Nup88: Nuclear pore c 44.2 3.1E+02 0.0067 27.3 10.9 44 113-156 583-626 (717)
131 KOG4797|consensus 44.0 1.2E+02 0.0026 24.1 6.6 39 116-154 67-110 (123)
132 PF05622 HOOK: HOOK protein; 43.1 8 0.00017 37.3 0.0 74 72-157 456-529 (713)
133 PF13874 Nup54: Nucleoporin co 43.0 1.2E+02 0.0026 23.6 6.6 73 72-157 41-127 (141)
134 PF03670 UPF0184: Uncharacteri 43.0 92 0.002 23.2 5.6 37 115-151 25-61 (83)
135 PF01166 TSC22: TSC-22/dip/bun 42.9 46 0.001 23.5 3.8 24 117-140 15-38 (59)
136 PF15188 CCDC-167: Coiled-coil 42.9 1.2E+02 0.0027 22.5 6.3 62 77-141 7-68 (85)
137 KOG3584|consensus 42.8 61 0.0013 29.7 5.5 26 128-153 317-342 (348)
138 PF11221 Med21: Subunit 21 of 42.7 97 0.0021 24.2 6.1 28 71-98 100-127 (144)
139 COG1340 Uncharacterized archae 42.6 2.6E+02 0.0056 25.3 10.1 77 72-154 17-93 (294)
140 PF10018 Med4: Vitamin-D-recep 42.2 1.9E+02 0.004 23.5 9.0 59 75-154 2-60 (188)
141 PF12329 TMF_DNA_bd: TATA elem 42.1 1.2E+02 0.0027 21.4 10.1 68 75-155 5-72 (74)
142 PF07334 IFP_35_N: Interferon- 42.1 27 0.00059 25.6 2.6 21 76-96 1-21 (76)
143 PF12325 TMF_TATA_bd: TATA ele 42.0 1.6E+02 0.0036 22.8 9.9 85 72-156 20-115 (120)
144 TIGR02209 ftsL_broad cell divi 41.8 94 0.002 21.4 5.3 33 117-149 25-57 (85)
145 TIGR00606 rad50 rad50. This fa 41.2 1.7E+02 0.0037 30.5 9.1 46 110-155 1048-1093(1311)
146 PRK04778 septation ring format 40.5 1.6E+02 0.0035 27.9 8.1 26 72-97 314-339 (569)
147 TIGR02449 conserved hypothetic 40.5 1.3E+02 0.0029 21.3 8.9 57 78-154 3-59 (65)
148 TIGR00219 mreC rod shape-deter 40.4 50 0.0011 28.7 4.5 16 142-157 96-111 (283)
149 TIGR00219 mreC rod shape-deter 40.1 84 0.0018 27.3 5.8 19 78-96 69-87 (283)
150 PF04799 Fzo_mitofusin: fzo-li 40.0 2.2E+02 0.0048 23.7 8.1 44 84-137 122-165 (171)
151 PF07058 Myosin_HC-like: Myosi 40.0 78 0.0017 29.1 5.7 44 82-138 115-158 (351)
152 TIGR02209 ftsL_broad cell divi 39.8 49 0.0011 22.8 3.6 23 74-96 37-59 (85)
153 PRK11020 hypothetical protein; 38.9 47 0.001 26.3 3.7 26 74-99 30-55 (118)
154 PRK10803 tol-pal system protei 38.3 2E+02 0.0043 24.7 7.8 32 120-151 72-103 (263)
155 TIGR02894 DNA_bind_RsfA transc 37.9 1.7E+02 0.0037 24.2 7.0 28 71-98 107-134 (161)
156 COG1196 Smc Chromosome segrega 37.8 3.6E+02 0.0078 27.9 10.7 40 114-153 875-914 (1163)
157 TIGR01843 type_I_hlyD type I s 37.5 2.7E+02 0.0058 24.0 9.7 33 120-152 141-173 (423)
158 PF06156 DUF972: Protein of un 37.5 1.6E+02 0.0035 22.4 6.4 24 73-96 27-50 (107)
159 PF02994 Transposase_22: L1 tr 37.1 77 0.0017 28.6 5.3 75 77-153 100-174 (370)
160 PF11802 CENP-K: Centromere-as 37.0 3.1E+02 0.0066 24.5 9.7 80 68-157 49-130 (268)
161 KOG2751|consensus 36.9 3.2E+02 0.0069 26.2 9.3 67 76-150 151-217 (447)
162 PHA03011 hypothetical protein; 36.8 70 0.0015 25.2 4.3 27 71-97 88-114 (120)
163 PF07246 Phlebovirus_NSM: Phle 36.4 2E+02 0.0044 25.6 7.6 32 119-150 198-229 (264)
164 KOG1853|consensus 36.4 1.5E+02 0.0032 27.0 6.8 34 66-99 49-83 (333)
165 cd04770 HTH_HMRTR Helix-Turn-H 36.1 1.4E+02 0.0031 22.0 5.8 22 120-141 83-104 (123)
166 cd07429 Cby_like Chibby, a nuc 35.8 96 0.0021 24.0 4.9 31 127-157 76-106 (108)
167 PF15294 Leu_zip: Leucine zipp 35.6 3.3E+02 0.0071 24.4 9.4 76 82-157 86-180 (278)
168 TIGR00606 rad50 rad50. This fa 35.4 4.7E+02 0.01 27.4 11.1 72 71-155 301-372 (1311)
169 COG3883 Uncharacterized protei 35.1 3.2E+02 0.007 24.2 9.7 72 71-155 34-105 (265)
170 KOG0992|consensus 35.0 2.5E+02 0.0055 27.6 8.5 30 130-159 231-260 (613)
171 COG1196 Smc Chromosome segrega 35.0 4.3E+02 0.0092 27.4 10.7 41 114-154 861-901 (1163)
172 TIGR03319 YmdA_YtgF conserved 35.0 4E+02 0.0087 25.3 10.2 8 128-135 92-99 (514)
173 COG1842 PspA Phage shock prote 35.0 2.9E+02 0.0062 23.6 9.6 67 80-151 57-127 (225)
174 PF12709 Kinetocho_Slk19: Cent 34.9 59 0.0013 24.4 3.5 26 74-99 48-73 (87)
175 PF07111 HCR: Alpha helical co 34.7 5.1E+02 0.011 26.4 11.2 64 74-153 488-551 (739)
176 COG1579 Zn-ribbon protein, pos 34.6 3.1E+02 0.0067 23.9 8.7 70 74-152 102-171 (239)
177 PF08826 DMPK_coil: DMPK coile 34.5 1.6E+02 0.0035 20.5 6.6 40 116-155 18-57 (61)
178 PF09006 Surfac_D-trimer: Lung 34.3 65 0.0014 21.7 3.3 21 119-139 2-22 (46)
179 CHL00154 rpl29 ribosomal prote 33.8 1.2E+02 0.0027 21.3 4.8 23 77-99 14-36 (67)
180 PF09766 FimP: Fms-interacting 33.7 2.5E+02 0.0055 25.2 8.0 16 71-86 87-102 (355)
181 PF12325 TMF_TATA_bd: TATA ele 33.6 2.3E+02 0.005 22.0 9.7 24 76-99 17-40 (120)
182 KOG0612|consensus 32.9 4.6E+02 0.0099 28.4 10.5 13 34-46 413-425 (1317)
183 PRK11239 hypothetical protein; 32.9 1.3E+02 0.0028 26.1 5.7 51 43-96 161-211 (215)
184 PF09278 MerR-DNA-bind: MerR, 32.4 1.4E+02 0.0031 19.3 5.3 25 119-143 39-63 (65)
185 PRK13922 rod shape-determining 32.0 1.4E+02 0.003 25.2 5.7 22 77-98 71-92 (276)
186 KOG0241|consensus 32.0 2.1E+02 0.0046 30.7 7.8 68 84-153 366-434 (1714)
187 PRK02224 chromosome segregatio 31.6 4.3E+02 0.0094 25.8 9.7 30 116-145 653-682 (880)
188 PRK02119 hypothetical protein; 30.5 2E+02 0.0043 20.4 5.8 24 117-140 3-26 (73)
189 cd04776 HTH_GnyR Helix-Turn-He 30.5 1.2E+02 0.0025 22.8 4.6 31 119-149 83-113 (118)
190 PF04156 IncA: IncA protein; 30.5 2.7E+02 0.0058 21.9 10.6 25 74-98 94-118 (191)
191 PF02050 FliJ: Flagellar FliJ 30.5 1.8E+02 0.004 20.0 11.2 43 113-155 42-84 (123)
192 PF07200 Mod_r: Modifier of ru 30.3 2.5E+02 0.0054 21.4 8.9 64 77-154 43-106 (150)
193 TIGR03007 pepcterm_ChnLen poly 30.3 4.1E+02 0.0089 24.1 8.8 31 113-143 201-231 (498)
194 KOG2264|consensus 30.2 2.4E+02 0.0052 28.5 7.7 55 77-151 95-149 (907)
195 COG4026 Uncharacterized protei 30.2 4E+02 0.0087 23.8 10.1 37 116-152 149-185 (290)
196 cd00890 Prefoldin Prefoldin is 30.1 2.1E+02 0.0045 20.8 5.8 37 119-155 90-126 (129)
197 KOG0288|consensus 29.5 3.5E+02 0.0076 25.9 8.3 34 112-145 37-70 (459)
198 KOG1510|consensus 29.4 1.9E+02 0.0041 23.6 5.8 27 72-99 89-115 (139)
199 cd04782 HTH_BltR Helix-Turn-He 29.3 1.4E+02 0.0031 21.4 4.8 23 129-151 73-95 (97)
200 PF11855 DUF3375: Protein of u 28.8 2.2E+02 0.0047 26.6 7.0 29 69-97 138-166 (478)
201 PF12128 DUF3584: Protein of u 28.8 6.9E+02 0.015 26.1 11.3 39 117-155 498-536 (1201)
202 PF03194 LUC7: LUC7 N_terminus 28.7 2E+02 0.0044 24.8 6.3 51 74-132 122-172 (254)
203 PF15070 GOLGA2L5: Putative go 28.4 5.4E+02 0.012 25.2 9.7 28 113-140 84-111 (617)
204 PF09421 FRQ: Frequency clock 28.3 54 0.0012 34.0 3.1 29 69-97 129-157 (989)
205 PF10883 DUF2681: Protein of u 28.2 75 0.0016 23.7 3.1 19 79-97 27-45 (87)
206 KOG2314|consensus 28.1 3.5E+02 0.0076 27.1 8.3 23 131-153 628-650 (698)
207 PF00261 Tropomyosin: Tropomyo 27.9 3.6E+02 0.0078 22.5 8.9 75 74-154 140-214 (237)
208 PF09744 Jnk-SapK_ap_N: JNK_SA 27.8 3.3E+02 0.0072 22.1 9.7 58 82-152 43-104 (158)
209 PF15397 DUF4618: Domain of un 27.7 81 0.0018 27.8 3.7 27 72-98 197-223 (258)
210 TIGR02976 phageshock_pspB phag 27.6 1.2E+02 0.0027 21.9 4.1 23 115-137 41-63 (75)
211 KOG3129|consensus 27.5 83 0.0018 27.5 3.7 22 113-134 18-39 (231)
212 PRK11091 aerobic respiration c 26.8 5.6E+02 0.012 24.4 11.1 33 125-157 133-165 (779)
213 TIGR03319 YmdA_YtgF conserved 26.8 5.6E+02 0.012 24.4 10.6 23 123-145 101-123 (514)
214 PHA02562 46 endonuclease subun 26.7 4.9E+02 0.011 23.7 10.1 31 116-146 358-388 (562)
215 PRK03947 prefoldin subunit alp 26.7 2.7E+02 0.006 21.0 6.1 40 116-155 6-45 (140)
216 KOG0962|consensus 26.7 3.6E+02 0.0078 29.1 8.6 73 77-157 1010-1082(1294)
217 COG1422 Predicted membrane pro 26.2 4.2E+02 0.0091 22.7 7.6 49 77-146 74-122 (201)
218 PF06305 DUF1049: Protein of u 26.0 73 0.0016 21.1 2.5 23 73-95 46-68 (68)
219 PF00038 Filament: Intermediat 25.9 4E+02 0.0088 22.5 10.5 41 114-154 267-307 (312)
220 PF15233 SYCE1: Synaptonemal c 25.8 1.5E+02 0.0032 24.0 4.6 36 119-154 65-106 (134)
221 PRK10920 putative uroporphyrin 25.7 5.4E+02 0.012 23.8 9.3 22 78-99 63-84 (390)
222 KOG0161|consensus 25.4 4.9E+02 0.011 29.3 9.6 44 111-154 1493-1536(1930)
223 PF05010 TACC: Transforming ac 25.4 4.2E+02 0.0091 22.5 11.9 65 74-154 135-199 (207)
224 PF06667 PspB: Phage shock pro 25.3 71 0.0015 23.2 2.5 18 120-137 46-63 (75)
225 PRK12704 phosphodiesterase; Pr 25.2 6E+02 0.013 24.2 10.6 8 79-86 61-68 (520)
226 KOG4797|consensus 25.2 1E+02 0.0022 24.5 3.5 25 72-96 71-95 (123)
227 PF03954 Lectin_N: Hepatic lec 25.1 2.5E+02 0.0054 22.8 5.8 52 76-136 49-100 (138)
228 COG3206 GumC Uncharacterized p 25.1 3.9E+02 0.0084 24.2 7.7 20 118-137 344-363 (458)
229 PF05615 THOC7: Tho complex su 25.0 2.4E+02 0.0051 21.5 5.5 18 114-131 103-120 (139)
230 PRK15178 Vi polysaccharide exp 25.0 2.5E+02 0.0054 26.5 6.6 22 75-96 286-307 (434)
231 PF09728 Taxilin: Myosin-like 24.9 4.9E+02 0.011 23.0 8.8 66 74-145 28-93 (309)
232 PF10211 Ax_dynein_light: Axon 24.8 3.9E+02 0.0085 21.9 8.8 66 76-153 85-150 (189)
233 PF06657 Cep57_MT_bd: Centroso 24.8 2.7E+02 0.0058 20.0 7.4 29 70-98 12-40 (79)
234 PF09403 FadA: Adhesion protei 24.6 3.5E+02 0.0076 21.3 9.3 17 80-96 25-41 (126)
235 PF02841 GBP_C: Guanylate-bind 24.5 4.5E+02 0.0099 22.6 8.7 25 74-98 203-227 (297)
236 cd01107 HTH_BmrR Helix-Turn-He 24.5 1.8E+02 0.0039 21.3 4.6 26 120-145 79-104 (108)
237 PF00038 Filament: Intermediat 24.3 4.3E+02 0.0094 22.3 10.9 7 43-49 176-182 (312)
238 KOG0161|consensus 24.1 4.5E+02 0.0096 29.6 9.0 79 68-152 1716-1794(1930)
239 PF09849 DUF2076: Uncharacteri 24.1 4.8E+02 0.01 22.7 8.5 26 123-148 48-73 (247)
240 PF10018 Med4: Vitamin-D-recep 24.0 3E+02 0.0065 22.3 6.2 44 111-155 11-54 (188)
241 PF14645 Chibby: Chibby family 23.9 1.6E+02 0.0035 22.7 4.4 29 127-155 75-103 (116)
242 smart00787 Spc7 Spc7 kinetocho 23.7 5.3E+02 0.011 23.0 9.9 23 76-98 173-195 (312)
243 PRK09458 pspB phage shock prot 23.7 80 0.0017 23.1 2.5 18 120-137 46-63 (75)
244 PF04340 DUF484: Protein of un 23.6 2.4E+02 0.0053 23.1 5.7 33 117-149 48-83 (225)
245 PRK12704 phosphodiesterase; Pr 23.6 6.5E+02 0.014 24.0 10.8 8 89-96 64-71 (520)
246 PF07926 TPR_MLP1_2: TPR/MLP1/ 23.4 3.4E+02 0.0073 20.7 9.0 72 76-149 60-131 (132)
247 COG3159 Uncharacterized protei 23.4 2.1E+02 0.0044 24.9 5.3 33 118-150 47-79 (218)
248 PHA02562 46 endonuclease subun 23.3 5.7E+02 0.012 23.3 10.1 34 121-154 356-389 (562)
249 cd00427 Ribosomal_L29_HIP Ribo 23.3 2.3E+02 0.0051 18.8 4.7 22 78-99 9-30 (57)
250 PRK13169 DNA replication intia 23.3 3.3E+02 0.0072 21.0 6.0 22 74-95 28-49 (110)
251 KOG4360|consensus 23.2 6.2E+02 0.013 25.1 8.9 35 120-154 265-299 (596)
252 PF12240 Angiomotin_C: Angiomo 23.1 4.9E+02 0.011 22.4 10.3 83 79-164 24-124 (205)
253 cd04779 HTH_MerR-like_sg4 Heli 23.1 2E+02 0.0042 22.5 4.8 32 113-144 78-109 (134)
254 KOG4643|consensus 23.0 7.5E+02 0.016 26.5 9.9 81 71-151 194-292 (1195)
255 KOG3129|consensus 22.9 1.5E+02 0.0032 26.0 4.3 40 112-159 11-50 (231)
256 cd04776 HTH_GnyR Helix-Turn-He 22.7 2.9E+02 0.0063 20.7 5.5 33 122-154 79-111 (118)
257 PTZ00419 valyl-tRNA synthetase 22.7 4.2E+02 0.0091 27.0 8.1 69 73-154 927-995 (995)
258 cd00592 HTH_MerR-like Helix-Tu 22.4 1.8E+02 0.0039 20.5 4.1 35 116-151 64-98 (100)
259 PRK14549 50S ribosomal protein 22.4 2.6E+02 0.0057 19.5 4.9 47 77-131 14-60 (69)
260 PF10267 Tmemb_cc2: Predicted 22.3 2.7E+02 0.0058 26.0 6.2 59 74-152 211-273 (395)
261 PF11285 DUF3086: Protein of u 22.3 1.9E+02 0.004 26.1 4.9 25 75-99 4-28 (283)
262 cd01107 HTH_BmrR Helix-Turn-He 22.2 2.9E+02 0.0063 20.2 5.3 32 123-154 75-106 (108)
263 PF04822 Takusan: Takusan; In 22.2 2.3E+02 0.005 20.9 4.7 11 71-81 19-29 (84)
264 PF10186 Atg14: UV radiation r 22.2 4.4E+02 0.0096 21.6 9.9 18 79-96 24-41 (302)
265 TIGR00634 recN DNA repair prot 22.1 5.4E+02 0.012 24.2 8.3 56 72-127 172-227 (563)
266 PF07851 TMPIT: TMPIT-like pro 22.1 4E+02 0.0086 24.3 7.1 12 85-96 7-18 (330)
267 KOG4674|consensus 22.0 4.6E+02 0.01 29.4 8.5 68 81-157 26-93 (1822)
268 PRK10636 putative ABC transpor 21.8 6.9E+02 0.015 23.9 9.0 28 123-150 605-632 (638)
269 KOG4001|consensus 21.6 1.7E+02 0.0036 25.8 4.5 33 123-155 185-217 (259)
270 PF07407 Seadorna_VP6: Seadorn 21.2 4.3E+02 0.0094 24.8 7.2 52 78-154 35-86 (420)
271 PF15458 NTR2: Nineteen comple 21.2 3.4E+02 0.0074 23.3 6.3 39 116-154 215-253 (254)
272 PF06428 Sec2p: GDP/GTP exchan 21.1 72 0.0016 24.1 1.9 38 73-119 6-43 (100)
273 PF06548 Kinesin-related: Kine 21.1 5.5E+02 0.012 24.9 8.0 64 83-149 359-422 (488)
274 cd04779 HTH_MerR-like_sg4 Heli 21.0 4E+02 0.0086 20.7 6.1 30 120-149 78-107 (134)
275 PF05837 CENP-H: Centromere pr 21.0 3.6E+02 0.0078 20.1 6.8 20 80-99 29-48 (106)
276 PF07798 DUF1640: Protein of u 20.9 4.4E+02 0.0095 21.0 9.3 24 74-97 72-95 (177)
277 PRK14872 rod shape-determining 20.8 1.7E+02 0.0036 26.7 4.5 21 78-98 60-80 (337)
278 TIGR00293 prefoldin, archaeal 20.7 2.9E+02 0.0063 20.4 5.1 35 121-155 4-38 (126)
279 TIGR02231 conserved hypothetic 20.7 6.8E+02 0.015 23.2 9.3 80 71-150 81-172 (525)
280 KOG2751|consensus 20.6 3.8E+02 0.0083 25.6 6.9 24 113-136 208-231 (447)
281 cd04775 HTH_Cfa-like Helix-Tur 20.6 2.3E+02 0.005 20.5 4.5 24 120-143 75-98 (102)
282 cd04789 HTH_Cfa Helix-Turn-Hel 20.5 2.1E+02 0.0045 20.8 4.2 25 119-143 74-98 (102)
283 PF06133 DUF964: Protein of un 20.5 3.3E+02 0.0071 19.4 6.5 13 84-96 35-47 (108)
284 PRK13752 putative transcriptio 20.4 2.4E+02 0.0052 22.1 4.8 29 119-147 87-115 (144)
285 TIGR02047 CadR-PbrR Cd(II)/Pb( 20.4 2.1E+02 0.0045 21.7 4.4 26 119-144 82-107 (127)
286 KOG4286|consensus 20.3 5.8E+02 0.013 26.6 8.4 110 33-159 709-818 (966)
287 PRK11239 hypothetical protein; 20.3 1.9E+02 0.0042 25.0 4.5 30 124-153 184-213 (215)
288 PRK10869 recombination and rep 20.3 7.2E+02 0.016 23.7 8.7 60 72-131 168-227 (553)
289 PF15397 DUF4618: Domain of un 20.2 4.1E+02 0.0088 23.5 6.6 45 109-153 186-230 (258)
290 PF12718 Tropomyosin_1: Tropom 20.1 4.4E+02 0.0095 20.7 9.5 27 72-98 32-58 (143)
291 cd04775 HTH_Cfa-like Helix-Tur 20.1 2.2E+02 0.0048 20.6 4.3 30 124-153 72-101 (102)
292 PF07926 TPR_MLP1_2: TPR/MLP1/ 20.0 4E+02 0.0087 20.3 8.9 11 88-98 58-68 (132)
No 1
>KOG4286|consensus
Probab=99.92 E-value=1.1e-25 Score=213.97 Aligned_cols=128 Identities=28% Similarity=0.452 Sum_probs=112.8
Q ss_pred CCCCCCCchhHHHHHHHHHhhhhcc-cCCCCCCCCcc--cccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccC-
Q psy4946 30 LEASRLDDEHKLIARYAAKLAAENR-SVGKAPSEGSL--SLDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCA- 105 (165)
Q Consensus 30 ~d~~~~DeEH~LIarY~~~L~~~~~-~~~~~p~~~~~--~~d~~~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~- 105 (165)
+.+...|++|.+|.|||..|.++++ .++.+|++|.- +.+..++++.|++.+|.+||.++.||.++|+||+..+..|
T Consensus 741 s~~~s~~~~q~lI~~~~~qL~rd~~~~q~~s~~~ilQf~~~e~r~ELe~I~a~le~e~r~lq~e~~qlk~Qhe~rg~AP~ 820 (966)
T KOG4286|consen 741 SPNESIDDEQLLIQHYCQQLNQDSPLSQPRSPAQILQSLESEERGELERILADLEEENRNLQAEYDRLKQQHEHKGLAPL 820 (966)
T ss_pred CccccchhHHHHHHHHHHHhccccccccccChHHHHHHHHHHHhhHHHHHHHHHHHhhhhhhcCCCcchhhhhcccCCCC
Confidence 3447799999999999999999966 56788887764 4456679999999999999999999999999999776533
Q ss_pred ----------CCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcC
Q psy4946 106 ----------SGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQ 157 (165)
Q Consensus 106 ----------~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~~ 157 (165)
++++.+.+|+|||++|||||+|||+||+||||||+||++||+||+.||.+|.
T Consensus 821 ls~~~s~~St~~tQ~~~dl~AEAkaLRqHK~RLE~R~rILEdhNKQLESQLqRLr~LLrQP~ 882 (966)
T KOG4286|consen 821 PSPPEMMPSTPQSQRDAELIAEAKALRQHKGRLEARMQILEDHNKQLESQLHRLRQLLRQPQ 882 (966)
T ss_pred CCCcccccCCCCcchhHHHHHHHHHHHHhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHhCCC
Confidence 2456789999999999999999999999999999999999999999999776
No 2
>KOG4301|consensus
Probab=99.48 E-value=3.3e-13 Score=121.12 Aligned_cols=135 Identities=23% Similarity=0.156 Sum_probs=113.0
Q ss_pred CCCCCCchhHHHHHHHHHhhhhccc-CC---CCCCCCcccccch---HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcc
Q psy4946 31 EASRLDDEHKLIARYAAKLAAENRS-VG---KAPSEGSLSLDTS---RAQRELVSQLESKNREIMREIARLRRQQELEGV 103 (165)
Q Consensus 31 d~~~~DeEH~LIarY~~~L~~~~~~-~~---~~p~~~~~~~d~~---~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~ 103 (165)
.+..+|.||.+|+.|+..|+..... .| +....+.+.++.+ +++.+.|..++++|+.|+.||++++-.||....
T Consensus 98 ss~~id~e~sislllaflLaA~ds~~~g~~~vfavkialatlc~gk~~dklryIfs~isds~gim~~i~~~~fl~evlsl 177 (434)
T KOG4301|consen 98 SSHQIDVEQSISLLLAFLLAAEDSEGQGKQQVFAVKIALATLCGGKIKDKLRYIFSLISDSRGIMQEIQRDQFLHEVLSL 177 (434)
T ss_pred ccccccHHHHHHHHHHHHHhhcCccCCCCceeecchhhhhhhccchHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHcC
Confidence 3478999999999999999988642 22 3334466777877 688999999999999999999999999985443
Q ss_pred cCC-CCCCCh---hHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCCCC
Q psy4946 104 CAS-GFEDNP---ALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQGTSPNSSP 165 (165)
Q Consensus 104 ~~~-~~~~~~---eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~~~~sp~ssp 165 (165)
+.+ ....++ ++.++.+.+||+|.+|+.+|..|+...+.+++++..||.+|+....++++++|
T Consensus 178 pT~v~e~psfg~te~~a~~cf~qqrKv~Ln~fldtl~sdp~p~cl~wlpLmhrla~v~nv~hpv~c 243 (434)
T KOG4301|consen 178 PTAVFEGPSFGYTELSARLCFLQQRKVELNQFLDTLMSDPPPQCLVWLPLMHRLATVENVFHPVEC 243 (434)
T ss_pred CchhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHhhcccCCCccC
Confidence 221 122344 99999999999999999999999999999999999999999999999988765
No 3
>KOG4301|consensus
Probab=99.37 E-value=8.9e-13 Score=118.38 Aligned_cols=67 Identities=46% Similarity=0.710 Sum_probs=60.9
Q ss_pred CCCCCchhHHHHHHHHHhhhhcccCCCCCCCCcccccchHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4946 32 ASRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 32 ~~~~DeEH~LIarY~~~L~~~~~~~~~~p~~~~~~~d~~~e~~~lIa~LE~eNR~l~~EieRLr~q~ 98 (165)
.+.++|||++||||++.|.++.+..-+.|.+..+..|+++++|.+||+||++||+|++||.||+.||
T Consensus 368 ~s~~r~e~~~~ar~aa~ls~e~~~p~~~p~d~nf~~davkq~r~lia~lE~~n~~i~~E~~rl~lq~ 434 (434)
T KOG4301|consen 368 PSTMRDEHALIARYAADLSTEAADPYRQPEDENFENDAVKQQRQLIAELENKNREILQEIQRLRLQH 434 (434)
T ss_pred ccchhhHHHHHHHHHhhhccccCCCccCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 3679999999999999999998765577778888899999999999999999999999999999875
No 4
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=93.43 E-value=0.27 Score=37.34 Aligned_cols=70 Identities=21% Similarity=0.306 Sum_probs=53.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhc-cc--CC---CCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHH
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRRQQELEG-VC--AS---GFEDNPALMSELRALRMRKDELESHLASLQDSRR 140 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~-~~--~~---~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnR 140 (165)
.=+|+=|++||++|+.|..|+.++|....... .+ +. .+.....|-.|+|+-|.-...|-.+.--||-.||
T Consensus 18 ~LlRRkl~ele~eN~~l~~EL~kyk~~~g~~d~~~~~~~g~~~~~~~~~l~~eLk~a~~qi~~Ls~kv~eLq~ENR 93 (96)
T PF11365_consen 18 ELLRRKLSELEDENKQLTEELNKYKSKYGDLDSLAKLSEGGSPSGREAELQEELKLAREQINELSGKVMELQYENR 93 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCCCCccccHHHHHHHHHHHHHHHHHhhHHHHHhhccc
Confidence 34588899999999999999999999764222 11 11 1234567889999999999999999888887776
No 5
>KOG4005|consensus
Probab=91.49 E-value=0.71 Score=40.80 Aligned_cols=53 Identities=28% Similarity=0.230 Sum_probs=40.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELES 130 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~ 130 (165)
+.+..|.+|++||+.|+.|-++||.+.+--- ..|.+|..|+-+|||.-.+|-+
T Consensus 94 eme~~i~dL~een~~L~~en~~Lr~~n~~L~------~~n~el~~~le~~~~~l~~~~~ 146 (292)
T KOG4005|consen 94 EMEYEIKDLTEENEILQNENDSLRAINESLL------AKNHELDSELELLRQELAELKQ 146 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHhhHH
Confidence 5678999999999999999999999875211 2566777777777776555543
No 6
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=90.40 E-value=2.6 Score=34.20 Aligned_cols=73 Identities=25% Similarity=0.388 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
+...-|+.|+.++..+..+|..|..+-.... ..+..|-.|+-.|.-+-.-+|.+...|+.-|++| ++|+|+
T Consensus 113 ~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~------k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~L---v~Rwm~ 183 (194)
T PF08614_consen 113 EKERRLAELEAELAQLEEKIKDLEEELKEKN------KANEILQDELQALQLQLNMLEEKLRKLEEENREL---VERWMQ 183 (194)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHH
Confidence 5566788888888888888887776543221 1455788899999999999999999999999999 566666
Q ss_pred HH
Q psy4946 152 LL 153 (165)
Q Consensus 152 LL 153 (165)
.-
T Consensus 184 ~k 185 (194)
T PF08614_consen 184 RK 185 (194)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 7
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=89.14 E-value=2 Score=40.67 Aligned_cols=72 Identities=22% Similarity=0.365 Sum_probs=47.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLM 150 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr 150 (165)
++.|.-+..|+.+|+.|.+|-+|||...... |..+-. .|.--+.++......|++.+.+|..+|..|.
T Consensus 69 k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~i---------d~~i~~---av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 69 KELRKRLAKLISENEALKAENERLQKREQSI---------DQQIQQ---AVQSETQELTKEIEQLKSERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH---------HHHHHH---HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5778888999999999999999998755321 111111 1112234566666666777777777777776
Q ss_pred HHHh
Q psy4946 151 RLLK 154 (165)
Q Consensus 151 ~LL~ 154 (165)
.-|+
T Consensus 137 ~~l~ 140 (472)
T TIGR03752 137 RRLA 140 (472)
T ss_pred HHHh
Confidence 6664
No 8
>PF11068 YlqD: YlqD protein; InterPro: IPR021297 This bacterial family of proteins has no known function. ; PDB: 4DCI_C.
Probab=88.79 E-value=7.4 Score=30.73 Aligned_cols=69 Identities=19% Similarity=0.393 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHH-----HHHHhHhHHHHHHHHHHHhHHHHHHH
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELR-----ALRMRKDELESHLASLQDSRRHLMVQ 145 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEar-----lLRQhK~rLE~RM~iLedhnRQLe~Q 145 (165)
.-.+.++++|++.-..+-.|+++|..+.- -+++|++ .+..=+..+++..+-+.+..++|..|
T Consensus 16 ~~K~~l~~~l~~~i~~~d~el~QLefq~k-------------r~~~e~~~~~~~~~~~i~~q~~~e~~~r~e~k~~l~~q 82 (131)
T PF11068_consen 16 KWKEELLQELQEQIQQLDQELQQLEFQGK-------------RMIKEIKKQNAQQIQSIQQQFEQEKQERLEQKNQLLQQ 82 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577899999998899999999987653 2334433 44445567888899999999999999
Q ss_pred HHHHHHH
Q psy4946 146 LEGLMRL 152 (165)
Q Consensus 146 LerLr~L 152 (165)
|+.+..|
T Consensus 83 l~qv~~L 89 (131)
T PF11068_consen 83 LEQVQKL 89 (131)
T ss_dssp HHHHHHS
T ss_pred HHHHhcC
Confidence 9988775
No 9
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=87.53 E-value=8.6 Score=28.34 Aligned_cols=42 Identities=12% Similarity=0.217 Sum_probs=33.7
Q ss_pred CChhHHHHHHH---HHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 110 DNPALMSELRA---LRMRKDELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 110 ~~~eLlaEarl---LRQhK~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
-+|+-+..+.+ +.++..+|..+.+.++..|.+|+.+++.+++
T Consensus 64 l~P~~~i~a~l~~~~~~~~~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 64 LTPEEDIRAHLAPYKKKEREQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred CChHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 45554444544 4678899999999999999999999999875
No 10
>KOG4001|consensus
Probab=87.08 E-value=4.7 Score=35.16 Aligned_cols=65 Identities=29% Similarity=0.430 Sum_probs=46.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHH--HhHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALR--MRKDELESHLASLQDSRRHLMVQLEGL 149 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLR--QhK~rLE~RM~iLedhnRQLe~QLerL 149 (165)
..+.=++.||.+|+.|-.-|..++.+.+... ---+|.+..- .||++ ..-|-+.|+||..||+++
T Consensus 189 ~~~~~~k~le~~k~~Le~~ia~~k~K~e~~e----------~r~~E~r~ieEkk~~ee----i~fLk~tN~qLKaQLegI 254 (259)
T KOG4001|consen 189 RATTEWKVLEDKKKELELKIAQLKKKLETDE----------IRSEEEREIEEKKMKEE----IEFLKETNRQLKAQLEGI 254 (259)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhc
Confidence 4466789999999999999999999887322 1223333221 23443 346899999999999986
Q ss_pred H
Q psy4946 150 M 150 (165)
Q Consensus 150 r 150 (165)
-
T Consensus 255 ~ 255 (259)
T KOG4001|consen 255 L 255 (259)
T ss_pred c
Confidence 3
No 11
>PF02403 Seryl_tRNA_N: Seryl-tRNA synthetase N-terminal domain; InterPro: IPR015866 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry represents the N-terminal domain of Seryl-tRNA synthetase, which consists of two helices in a long alpha-hairpin. Seryl-tRNA synthetase (6.1.1.11 from EC) exists as monomer and belongs to class IIa [].; GO: 0000166 nucleotide binding, 0004828 serine-tRNA ligase activity, 0005524 ATP binding, 0006434 seryl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3QO8_A 3QO5_A 3QO7_A 3QNE_A 3LSQ_A 3LSS_A 2DQ3_B 1SET_A 1SER_A 1SRY_B ....
Probab=86.87 E-value=3.8 Score=29.93 Aligned_cols=67 Identities=25% Similarity=0.408 Sum_probs=46.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcc----cCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHH
Q psy4946 77 VSQLESKNREIMREIARLRRQQELEGV----CASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLM 143 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e~~~~----~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe 143 (165)
|-.|-.+.|.++.+++.|+.+.-.... ....+..-.+|++|++.|......||..+..+++....++
T Consensus 31 i~~ld~~~r~l~~~~e~lr~~rN~~sk~I~~~~~~~~~~~~l~~e~~~lk~~i~~le~~~~~~e~~l~~~l 101 (108)
T PF02403_consen 31 IIELDQERRELQQELEELRAERNELSKEIGKLKKAGEDAEELKAEVKELKEEIKELEEQLKELEEELNELL 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346778888889999988887643221 0011235668999999888888888888877766655544
No 12
>PF03961 DUF342: Protein of unknown function (DUF342); InterPro: IPR005646 This family of bacterial proteins has no known function. The proteins are in the region of 500-600 amino acid residues in length.
Probab=86.50 E-value=9.4 Score=34.75 Aligned_cols=79 Identities=22% Similarity=0.294 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGL 149 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerL 149 (165)
.++.+.+..|+++.+.+..++++++..-..-..........++..+.+..+++.+..|..++..|++...+|+.+|+..
T Consensus 330 ~~l~~~~~~l~~~~~~~~~~l~~l~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~ 408 (451)
T PF03961_consen 330 PELKEKLEELEEELEELKEELEKLKKNLKKLKKLKKQGKLPPEKKEQLKKLKEKKKELKEELKELKEELKELKEELERS 408 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667777777777777777777777643211100012235678888899999999999999999999999999888876
No 13
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=85.58 E-value=3.9 Score=38.80 Aligned_cols=62 Identities=13% Similarity=0.234 Sum_probs=44.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLL 153 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL 153 (165)
..-+++=+.+..+|.++|+.||.+- .++-..+..+|.+...|++.+++|..|++.+...+
T Consensus 68 qSALteqQ~kasELEKqLaaLrqEl--------------------q~~saq~~dle~KIkeLEaE~~~Lk~Ql~a~~~~~ 127 (475)
T PRK13729 68 QHATTEMQVTAAQMQKQYEEIRREL--------------------DVLNKQRGDDQRRIEKLGQDNAALAEQVKALGANP 127 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 3345566777888888888886432 23335566789999999999999999997766654
Q ss_pred hh
Q psy4946 154 KT 155 (165)
Q Consensus 154 ~~ 155 (165)
..
T Consensus 128 ~~ 129 (475)
T PRK13729 128 VT 129 (475)
T ss_pred CC
Confidence 43
No 14
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=85.07 E-value=12 Score=31.41 Aligned_cols=78 Identities=19% Similarity=0.339 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
+..+-|.++.++-..+..||+.|+.+-+.-.. .+..+-..+.-+++.-.+|++++..++..+++|.-.+.+...
T Consensus 39 ~sQ~~id~~~~e~~~L~~e~~~l~~e~e~L~~------~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~m~~m~~ 112 (251)
T PF11932_consen 39 QSQKRIDQWDDEKQELLAEYRQLEREIENLEV------YNEQLERQVASQEQELASLEQQIEQIEETRQELVPLMEQMID 112 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567888888888888888888887653221 344555666677788999999999999999999887766666
Q ss_pred HHhh
Q psy4946 152 LLKT 155 (165)
Q Consensus 152 LL~~ 155 (165)
-|++
T Consensus 113 ~L~~ 116 (251)
T PF11932_consen 113 ELEQ 116 (251)
T ss_pred HHHH
Confidence 5554
No 15
>PF12711 Kinesin-relat_1: Kinesin motor; InterPro: IPR024658 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. Kinesin-like proteins KLP2 (or KIF15) also contain a kinesin 'motor' domain. They are involved in mitotic spindle assembly, playing a role in positioning spindle poles during mitosis, specifically at prometaphase []. This entry represents a domain of unknown function found in this type of kinesin-like proteins.
Probab=84.07 E-value=5.5 Score=29.70 Aligned_cols=21 Identities=43% Similarity=0.515 Sum_probs=18.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHh
Q psy4946 79 QLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 79 ~LE~eNR~l~~EieRLr~q~e 99 (165)
.++++|+.|+.||+-|+.+-+
T Consensus 21 ~~~~e~~~L~eEI~~Lr~qve 41 (86)
T PF12711_consen 21 YLEEENEALKEEIQLLREQVE 41 (86)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 577888999999999998876
No 16
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=83.82 E-value=14 Score=31.40 Aligned_cols=86 Identities=26% Similarity=0.336 Sum_probs=57.4
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh-----cccC-------------CCCCCChhHHHHHHHHHHhHhHHHHH
Q psy4946 70 SRAQRELVSQLESKNREIMREIARLRRQQELE-----GVCA-------------SGFEDNPALMSELRALRMRKDELESH 131 (165)
Q Consensus 70 ~~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~-----~~~~-------------~~~~~~~eLlaEarlLRQhK~rLE~R 131 (165)
+..+..-|-..|+-|..|..||.-|+.+--.. .+-. .--..+.-|+|.+|.+---..-|.+.
T Consensus 24 n~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~ 103 (193)
T PF14662_consen 24 NAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAE 103 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666777777777777776533111 0000 00124557899999998888899999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 132 LASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 132 M~iLedhnRQLe~QLerLr~LL~~ 155 (165)
|..||+-|..|-+...+|.+-.++
T Consensus 104 i~~Lqeen~kl~~e~~~lk~~~~e 127 (193)
T PF14662_consen 104 IETLQEENGKLLAERDGLKKRSKE 127 (193)
T ss_pred HHHHHHHHhHHHHhhhhHHHHHHH
Confidence 999999999999988887765543
No 17
>PRK10884 SH3 domain-containing protein; Provisional
Probab=83.48 E-value=15 Score=30.95 Aligned_cols=76 Identities=13% Similarity=0.208 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccc-CCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVC-ASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLM 150 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~-~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr 150 (165)
..+..+.+||.+..++..++..++.+.....+- ..........+. -|.....+|.+....++..++.|+.++..+.
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~---~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~ 166 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVIN---GLKEENQKLKNQLIVAQKKVDAANLQLDDKQ 166 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356667777777777777777766543211000 000000111122 2445666666666666666666666666554
No 18
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=83.43 E-value=7.4 Score=37.59 Aligned_cols=71 Identities=23% Similarity=0.341 Sum_probs=57.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLM 150 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr 150 (165)
..|-.+.|.--..|..||++||..+.. ....-...+.|++-+|+.-.+++.-.+.-++.-+||..+++.+-
T Consensus 411 ~~L~~qWe~~R~pL~~e~r~lk~~~~~------~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~ 481 (594)
T PF05667_consen 411 VELAQQWEKHRAPLIEEYRRLKEKASN------RESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLP 481 (594)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhh------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 446667777777899999999987642 11234468999999999999999999999999999999887763
No 19
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=83.00 E-value=11 Score=31.23 Aligned_cols=58 Identities=16% Similarity=0.314 Sum_probs=44.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 77 VSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
...|+.||..+..|+..|+.+.+ .|..-...|+.+.+++++-=+.|...++|-|++..
T Consensus 99 ~~~~~~e~~~l~~e~~~l~~~~e--------------------~Le~e~~~L~~~~~~~~eDY~~L~~Im~RARkl~~ 156 (161)
T TIGR02894 99 DQALQKENERLKNQNESLQKRNE--------------------ELEKELEKLRQRLSTIEEDYQTLIDIMDRARKLAV 156 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44566677777777777776553 55566778888889999999999999999998764
No 20
>PLN02678 seryl-tRNA synthetase
Probab=82.46 E-value=6.8 Score=36.56 Aligned_cols=63 Identities=21% Similarity=0.234 Sum_probs=37.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcc--c--CCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhH
Q psy4946 77 VSQLESKNREIMREIARLRRQQELEGV--C--ASGFEDNPALMSELRALRMRKDELESHLASLQDSR 139 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e~~~~--~--~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhn 139 (165)
|-.|.++-|+++.+++.||.+...... . ......-.+|++|++.|.+....||.....+++..
T Consensus 35 il~ld~~~r~l~~~~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l 101 (448)
T PLN02678 35 VIALDKEWRQRQFELDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAAL 101 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446788888888888888886643221 0 01112334688888877665555555554444433
No 21
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=82.08 E-value=11 Score=37.07 Aligned_cols=67 Identities=28% Similarity=0.441 Sum_probs=40.0
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHH-HhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHH
Q psy4946 75 ELVSQLESKNREIMREIARLRRQ-QELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRH 141 (165)
Q Consensus 75 ~lIa~LE~eNR~l~~EieRLr~q-~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQ 141 (165)
..|..||.+.+.|..|++..|.. +|.......-......+-.|+..||+--+.|+.|++.|..++.+
T Consensus 418 ~a~~rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~ 485 (697)
T PF09726_consen 418 DAISRLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQARQQ 485 (697)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888888888888877752 22222101111233456677777777666666666666555543
No 22
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=81.79 E-value=20 Score=29.50 Aligned_cols=83 Identities=17% Similarity=0.267 Sum_probs=54.8
Q ss_pred cccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHH
Q psy4946 66 SLDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQ 145 (165)
Q Consensus 66 ~~d~~~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~Q 145 (165)
.-++....+.-+..|..+...+..+|..|+.+-+.....-..+..-..+++++.-|+....+|......+.+..-+.-.+
T Consensus 60 ps~~~~~~~~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~ 139 (188)
T PF03962_consen 60 PSQAKQKRQNKLEKLQKEIEELEKKIEELEEKIEEAKKGREESEEREELLEELEELKKELKELKKELEKYSENDPEKIEK 139 (188)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 33455567778888888888888888888876653322111122334688888888888888888887666655544444
Q ss_pred HHH
Q psy4946 146 LEG 148 (165)
Q Consensus 146 Ler 148 (165)
+..
T Consensus 140 ~~~ 142 (188)
T PF03962_consen 140 LKE 142 (188)
T ss_pred HHH
Confidence 433
No 23
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.74 E-value=24 Score=27.86 Aligned_cols=62 Identities=21% Similarity=0.269 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQD 137 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLed 137 (165)
+...=|.+|.++...+..++..|+.+-..-. ..+.+.+|..+..-|.+-...|+.|+..|..
T Consensus 76 ~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~----~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 76 ELDAEIKELREELAELKKEVKSLEAELASLS----SEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444488888888888888888887553222 2346778999999999999999999998876
No 24
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=81.69 E-value=13 Score=30.54 Aligned_cols=65 Identities=22% Similarity=0.318 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEG 148 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLer 148 (165)
+.+.-|++|+.++..|..++..|+.+-+... .-.+|.+. ............|...|+||..||++
T Consensus 124 ~l~~~i~~L~~e~~~L~~~~~~l~~~~e~~e----------k~~~e~~~--~~~k~~~~ei~~lk~~~~ql~~~l~~ 188 (189)
T PF10211_consen 124 ELEEEIEELEEEKEELEKQVQELKNKCEQLE----------KREEELRQ--EEEKKHQEEIDFLKKQNQQLKAQLEQ 188 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5566788888888888888888887665322 11112211 22223344455788999999999875
No 25
>PF11365 DUF3166: Protein of unknown function (DUF3166); InterPro: IPR021507 This eukaryotic family of proteins has no known function.
Probab=81.65 E-value=4.4 Score=30.79 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=27.1
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Q psy4946 116 SELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTH 156 (165)
Q Consensus 116 aEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~ 156 (165)
.||-+||.. |.-|++||++|+.+|.+++......
T Consensus 15 EEa~LlRRk-------l~ele~eN~~l~~EL~kyk~~~g~~ 48 (96)
T PF11365_consen 15 EEAELLRRK-------LSELEDENKQLTEELNKYKSKYGDL 48 (96)
T ss_pred HHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 467788864 6677899999999999999877533
No 26
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.23 E-value=16 Score=28.86 Aligned_cols=62 Identities=26% Similarity=0.446 Sum_probs=50.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhH--hHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 77 VSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRK--DELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK--~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
++.|..+...|..|+..|+.+- ..|-+|++-|+..- .+|...+..|+..+.+|+..|+.|+.
T Consensus 74 l~~ld~ei~~L~~el~~l~~~~-------------k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 74 LAELDAEIKELREELAELKKEV-------------KSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6677777888888888888754 35778898888765 78888899999999999999988875
No 27
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=81.07 E-value=17 Score=29.57 Aligned_cols=69 Identities=17% Similarity=0.318 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGL 149 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerL 149 (165)
+...=+..|..+|..|..+|++-+..... ....++.-=..+|+.+..|..+...||..||+|+..+..+
T Consensus 47 ~~~~e~~~L~~d~e~L~~q~~~ek~~r~~---------~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e~r~L~~~~~~~ 115 (158)
T PF09744_consen 47 EHEVELELLREDNEQLETQYEREKELRKQ---------AEEELLELEDQWRQERKDLQSQVEQLEEENRQLELKLKNL 115 (158)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444557777888888888776654321 1223443335778999999999999999999999665543
No 28
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=80.50 E-value=10 Score=37.31 Aligned_cols=78 Identities=23% Similarity=0.267 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLM 150 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr 150 (165)
.++|..|..|.+-.|.+..|+..||.+.+.-.. .-..|+.--..=||...-||-|....++.|..||.||...+
T Consensus 442 ~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~------Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~lEkQL~eEr 515 (697)
T PF09726_consen 442 QELRSQISSLTNNERSLKSELSQLRQENEQLQN------KLQNLVQARQQDKQSLQQLEKRLAEERRQRASLEKQLQEER 515 (697)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888888788999999999988873321 11233333333466678899999999999999999999998
Q ss_pred HHHh
Q psy4946 151 RLLK 154 (165)
Q Consensus 151 ~LL~ 154 (165)
+-=+
T Consensus 516 k~r~ 519 (697)
T PF09726_consen 516 KARK 519 (697)
T ss_pred HHHh
Confidence 6544
No 29
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=79.79 E-value=25 Score=30.87 Aligned_cols=23 Identities=22% Similarity=0.462 Sum_probs=13.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHH
Q psy4946 76 LVSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 76 lIa~LE~eNR~l~~EieRLr~q~ 98 (165)
++-.|.++...|..|+.+|+...
T Consensus 178 ~~~~l~~~~~~L~~e~~~Lk~~~ 200 (325)
T PF08317_consen 178 LLPKLRERKAELEEELENLKQLV 200 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555556666666666543
No 30
>KOG0249|consensus
Probab=79.11 E-value=7.4 Score=39.20 Aligned_cols=85 Identities=13% Similarity=0.089 Sum_probs=61.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccC--C-CCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy4946 73 QRELVSQLESKNREIMREIARLRRQQELEGVCA--S-GFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGL 149 (165)
Q Consensus 73 ~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~--~-~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerL 149 (165)
++..+.++|++|+.++.=++-+..+-.....+. + -......=++|+..=++|-+..|+|+.-|+..+..+-..|+|+
T Consensus 103 kda~lrq~eekn~slqerLelaE~~l~qs~rae~lpeveael~qr~~al~~aee~~~~~eer~~kl~~~~qe~naeL~ra 182 (916)
T KOG0249|consen 103 KDADLRQNEEKNRSLQERLELAEPKLQQSLRAETLPEVEAELAQRNAALTKAEEHSGNIEERTRKLEEQLEELNAELQRA 182 (916)
T ss_pred cchhhchhHHhhhhhhHHHHHhhHhhHhHHhhhhhhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHH
Confidence 356888999999999887776665432111110 1 0011122356677778999999999999999999999999999
Q ss_pred HHHHhhcC
Q psy4946 150 MRLLKTHQ 157 (165)
Q Consensus 150 r~LL~~~~ 157 (165)
++.++...
T Consensus 183 rqreemne 190 (916)
T KOG0249|consen 183 RQREKMNE 190 (916)
T ss_pred HHHHHhhh
Confidence 99998544
No 31
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=78.71 E-value=28 Score=26.87 Aligned_cols=71 Identities=23% Similarity=0.334 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLM 150 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr 150 (165)
..+..-+..|+.++..+...++||+.+.+ ++-.|+..+-..-..|+.....++...+.+..+++++.
T Consensus 55 e~l~~~~~~l~~d~~~l~~~~~rL~~~~~-------------~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 55 EDLSDKLRRLRSDIERLQNDVERLKEQLE-------------ELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555667777777777777777776554 23344445555555566666666666666666666665
Q ss_pred HHHh
Q psy4946 151 RLLK 154 (165)
Q Consensus 151 ~LL~ 154 (165)
..+.
T Consensus 122 ~~~~ 125 (151)
T PF11559_consen 122 NQLQ 125 (151)
T ss_pred HHHH
Confidence 5443
No 32
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=78.01 E-value=24 Score=27.17 Aligned_cols=70 Identities=23% Similarity=0.266 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHHhhh--cccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Q psy4946 86 EIMREIARLRRQQELE--GVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTH 156 (165)
Q Consensus 86 ~l~~EieRLr~q~e~~--~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~ 156 (165)
.|-.||..||.|..-- +.-.. -..+.+|-.+++---+--.++|+.+.+|.=+|.||..-.+.|+.-|...
T Consensus 2 kla~eYsKLraQ~~vLKKaVieE-Q~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~~~ 73 (102)
T PF10205_consen 2 KLAQEYSKLRAQNQVLKKAVIEE-QAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELEES 73 (102)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3678999999876311 00000 0135578888887777778999999999999999999999999998844
No 33
>PRK05431 seryl-tRNA synthetase; Provisional
Probab=77.84 E-value=12 Score=34.24 Aligned_cols=64 Identities=23% Similarity=0.357 Sum_probs=37.6
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhcc--cC-CCC-CCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHH
Q psy4946 78 SQLESKNREIMREIARLRRQQELEGV--CA-SGF-EDNPALMSELRALRMRKDELESHLASLQDSRRH 141 (165)
Q Consensus 78 a~LE~eNR~l~~EieRLr~q~e~~~~--~~-~~~-~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQ 141 (165)
-.|.++-|+++.+++.||.+...... .. ... ....+|++|++.|++....||+....+++...+
T Consensus 31 ~~ld~~~r~l~~~~~~lr~~rn~~sk~i~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~ 98 (425)
T PRK05431 31 LELDEERRELQTELEELQAERNALSKEIGQAKRKGEDAEALIAEVKELKEEIKALEAELDELEAELEE 98 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777788888888888876642211 00 011 123458888887777666666665555544443
No 34
>PF11180 DUF2968: Protein of unknown function (DUF2968); InterPro: IPR021350 This family of proteins has no known function.
Probab=77.32 E-value=24 Score=29.95 Aligned_cols=69 Identities=20% Similarity=0.284 Sum_probs=48.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHH
Q psy4946 73 QRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLE 147 (165)
Q Consensus 73 ~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLe 147 (165)
.+++|+.=|++-..|+..+..-+.|...+.. .-...-.|+..|+-.|...-++...|+.+-++|+.|.+
T Consensus 117 ~eR~ia~~~~ra~~LqaDl~~~~~Q~~~va~------~Q~q~r~ea~aL~~e~~aaqaQL~~lQ~qv~~Lq~q~~ 185 (192)
T PF11180_consen 117 LERLIAESEARANRLQADLQIARQQQQQVAA------RQQQARQEAQALEAERRAAQAQLRQLQRQVRQLQRQAN 185 (192)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3667777777777778877777766654331 33456678888888888888888888877777777754
No 35
>PLN02320 seryl-tRNA synthetase
Probab=77.29 E-value=12 Score=35.62 Aligned_cols=62 Identities=24% Similarity=0.259 Sum_probs=39.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcc--cC-CCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHh
Q psy4946 77 VSQLESKNREIMREIARLRRQQELEGV--CA-SGFEDNPALMSELRALRMRKDELESHLASLQDS 138 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e~~~~--~~-~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedh 138 (165)
|-.|.++-|.++.|++.||.+...... .. .....-.+|++|++.|++....||+....+++.
T Consensus 95 l~~ld~~~r~~~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~ 159 (502)
T PLN02320 95 VLELYENMLALQKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDE 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777889999999999987643221 01 112234578888887777666666666554443
No 36
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=76.01 E-value=6.5 Score=25.88 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQ 97 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q 97 (165)
+++.-+..|+.+|..|..+|..|+.+
T Consensus 29 ~le~~~~~L~~en~~L~~~i~~L~~E 54 (54)
T PF07716_consen 29 ELEQEVQELEEENEQLRQEIAQLERE 54 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 56778888999999999988888753
No 37
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=75.54 E-value=4.8 Score=33.15 Aligned_cols=42 Identities=33% Similarity=0.483 Sum_probs=14.9
Q ss_pred CChhHHHHHHHHHHhH---hHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 110 DNPALMSELRALRMRK---DELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 110 ~~~eLlaEarlLRQhK---~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
++|+|++++++=..+. +=.|-+|..|.+.|++|+.||+.|+.
T Consensus 24 ~~~~ll~~l~~ph~~~~avSL~erQ~~~LR~~~~~L~~~l~~Li~ 68 (225)
T PF04340_consen 24 RHPELLAELRLPHPSGGAVSLVERQLERLRERNRQLEEQLEELIE 68 (225)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCHHHHHHcCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666555433222 12455566666666666666665554
No 38
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=75.24 E-value=32 Score=32.00 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=26.2
Q ss_pred HhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 123 MRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 123 QhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
-|+..||.=..-+.+.|.+|+.||+.+++...
T Consensus 127 ~~~q~LE~li~~~~EEn~~lqlqL~~l~~e~~ 158 (401)
T PF06785_consen 127 GDIQHLEGLIRHLREENQCLQLQLDALQQECG 158 (401)
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 36677888888888899999999888887763
No 39
>PF08287 DASH_Spc19: Spc19; InterPro: IPR013251 Spc19 is a component of the DASH complex. The DASH complex associates with the spindle pole body and is important for spindle and kinetochore integrity during cell division [, ].
Probab=75.06 E-value=22 Score=28.60 Aligned_cols=63 Identities=19% Similarity=0.245 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcc-----c--C---C---------------CCCCChhHHHHHHHHHHhHh
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGV-----C--A---S---------------GFEDNPALMSELRALRMRKD 126 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~-----~--~---~---------------~~~~~~eLlaEarlLRQhK~ 126 (165)
....++..+|+.--.+.++.+-|+.+.+.... . . . ....+.+=++++|.|||+|.
T Consensus 65 ~I~~Ll~k~e~~l~kL~Rr~~tL~ak~EL~~~RL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Lk~L~~kKe 144 (153)
T PF08287_consen 65 QINHLLDKAEKHLEKLQRREETLKAKCELQQGRLSNYESTDSSSESGESEEERLSTDPVVMKSSDEEELERLKALRQKKE 144 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccCCccccccchhhhhhccchhhcccccHHHHHHHHHHHHHHH
Confidence 55678888888888888888888877663321 0 0 0 01234456889999999999
Q ss_pred HHHHHHHH
Q psy4946 127 ELESHLAS 134 (165)
Q Consensus 127 rLE~RM~i 134 (165)
||+-.+.-
T Consensus 145 rL~y~ver 152 (153)
T PF08287_consen 145 RLKYSVER 152 (153)
T ss_pred HHHHHHHh
Confidence 99877653
No 40
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=74.77 E-value=17 Score=33.25 Aligned_cols=66 Identities=18% Similarity=0.323 Sum_probs=37.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcc--cC-CCCCCC--hhHHHHHHHHHHhHhHHHHHHHHHHHhHHHH
Q psy4946 77 VSQLESKNREIMREIARLRRQQELEGV--CA-SGFEDN--PALMSELRALRMRKDELESHLASLQDSRRHL 142 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e~~~~--~~-~~~~~~--~eLlaEarlLRQhK~rLE~RM~iLedhnRQL 142 (165)
|..|.++-|+++.|++.||.+...... .. .+...+ .+|+++++-|++....||+.+..+++...++
T Consensus 32 i~~ld~~~r~~~~~~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (418)
T TIGR00414 32 LIALDDERKKLLSEIEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDK 102 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666777777777777766542211 00 011122 4678888877777666666665555544443
No 41
>PF07716 bZIP_2: Basic region leucine zipper; InterPro: IPR011700 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotes are proteins that contain a basic region mediating sequence-specific DNA-binding, followed by a leucine zipper region (see IPR002158 from INTERPRO), which is required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1NWQ_A 1H89_B 1H88_A 1GTW_B 2E43_A 1IO4_A 1GU4_B 2E42_A 1H8A_B 1GU5_B ....
Probab=74.17 E-value=10 Score=24.94 Aligned_cols=29 Identities=28% Similarity=0.492 Sum_probs=24.3
Q ss_pred HhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 123 MRKDELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 123 QhK~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
++...||.+...|+..|.+|..++..|.+
T Consensus 25 ~~~~~le~~~~~L~~en~~L~~~i~~L~~ 53 (54)
T PF07716_consen 25 QREEELEQEVQELEEENEQLRQEIAQLER 53 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45577899999999999999999888764
No 42
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=73.82 E-value=34 Score=32.64 Aligned_cols=69 Identities=25% Similarity=0.390 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHH--------HHHHhHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLA--------SLQDSRRHLM 143 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~--------iLedhnRQLe 143 (165)
.+|.||++ .+++.+|++.|.. +|..|.+|-.-||++-..+.+|.+ .|++..+||.
T Consensus 60 TlrTlva~----~k~~r~~~~~l~~-------------~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~ 122 (472)
T TIGR03752 60 TLRTLVAE----VKELRKRLAKLIS-------------ENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLK 122 (472)
T ss_pred hHHHHHHH----HHHHHHHHHHHHH-------------HHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 56666665 4677777777776 455788999999998776666653 4666778888
Q ss_pred HHHHHHHHHHhhcC
Q psy4946 144 VQLEGLMRLLKTHQ 157 (165)
Q Consensus 144 ~QLerLr~LL~~~~ 157 (165)
.+++.|+.+|.+.+
T Consensus 123 ~~~~~~~~~l~~l~ 136 (472)
T TIGR03752 123 SERQQLQGLIDQLQ 136 (472)
T ss_pred HHHHHHHHHHHHHH
Confidence 88888887777655
No 43
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=73.54 E-value=41 Score=29.90 Aligned_cols=23 Identities=13% Similarity=0.170 Sum_probs=11.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~ 96 (165)
+.|+..|+..--.|+.+++.|..
T Consensus 143 egLk~~L~~~~~~l~~D~~~L~~ 165 (312)
T smart00787 143 EGLKEGLDENLEGLKEDYKLLMK 165 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555544445555555443
No 44
>PF05700 BCAS2: Breast carcinoma amplified sequence 2 (BCAS2); InterPro: IPR008409 This family consists of several eukaryotic sequences of unknown function. The mammalian members of this family are annotated as breast carcinoma amplified sequence 2 (BCAS2) proteins []. BCAS2 is a putative spliceosome associated protein [].
Probab=72.54 E-value=55 Score=27.27 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=43.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
.++.++..||.+...+.++|+.+-++.-.. -.+.-.+++.|-++-.++=.+.-.++--..+|+.++.+|++
T Consensus 140 ~Le~~~~~le~~l~~~k~~ie~vN~~RK~~---------Q~~~~~~L~~Le~~W~~~v~kn~eie~a~~~Le~ei~~l~~ 210 (221)
T PF05700_consen 140 QLEAMLKRLEKELAKLKKEIEEVNRERKRR---------QEEAGEELRYLEQRWKELVSKNLEIEVACEELEQEIEQLKR 210 (221)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666666666555432211 11234566666666666666666666667777777766665
Q ss_pred HHh
Q psy4946 152 LLK 154 (165)
Q Consensus 152 LL~ 154 (165)
-..
T Consensus 211 ~~~ 213 (221)
T PF05700_consen 211 KAA 213 (221)
T ss_pred HHH
Confidence 443
No 45
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=72.06 E-value=38 Score=25.13 Aligned_cols=48 Identities=25% Similarity=0.418 Sum_probs=27.6
Q ss_pred HHHHHhhhhH-------HHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHH
Q psy4946 76 LVSQLESKNR-------EIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQ 136 (165)
Q Consensus 76 lIa~LE~eNR-------~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLe 136 (165)
++.+||.|.. -|+-||+.||.+.. .|-.|+..+|--+..|++.-+-|.
T Consensus 5 vleqLE~KIqqAvdtI~LLqmEieELKekn~-------------~L~~e~~~~~~~r~~L~~en~qLk 59 (79)
T PRK15422 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNN-------------SLSQEVQNAQHQREELERENNHLK 59 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 4556666533 37778888877543 455555555555555555444433
No 46
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=71.75 E-value=15 Score=28.86 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=37.3
Q ss_pred CChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 110 DNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 110 ~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
.-++++.|++ .++..||-|...|+..-+-|+.+|+.|...|-.
T Consensus 67 ~k~~~~~eL~---er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~ 109 (119)
T COG1382 67 SKEEAVDELE---ERKETLELRIKTLEKQEEKLQERLEELQSEIQK 109 (119)
T ss_pred hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777766 999999999999999999999999999887763
No 47
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=71.70 E-value=72 Score=28.21 Aligned_cols=28 Identities=25% Similarity=0.534 Sum_probs=17.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e 99 (165)
+.+.-|..|+.+...+.+|++.|..+.+
T Consensus 47 ~~~~el~~le~Ee~~l~~eL~~LE~e~~ 74 (314)
T PF04111_consen 47 ELEEELEKLEQEEEELLQELEELEKERE 74 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455556666666666666666666553
No 48
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=70.91 E-value=18 Score=31.20 Aligned_cols=80 Identities=16% Similarity=0.250 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhh-c----------------ccCC----CCCCChhHHHHHHHHHHhHhHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELE-G----------------VCAS----GFEDNPALMSELRALRMRKDELES 130 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~-~----------------~~~~----~~~~~~eLlaEarlLRQhK~rLE~ 130 (165)
++++||++||+....++.+...-....+.. . .+|. +...+..||. ++-...||+=+
T Consensus 17 ~~~~L~~kLE~DL~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~sp~ss~~~~~~~~siLp---IVtsQRDRFR~ 93 (248)
T PF08172_consen 17 EQKELNAKLENDLAKVQASSSASRSFNDGASMASGATRQIPNSGRSGSLSPTSSIIGGGGDSSILP---IVTSQRDRFRQ 93 (248)
T ss_pred HHHHHHHHHHHHHHHHhcccccccCCCCcccccccchhhccCccccCCCCCCccCCCCCCcccHHH---HHHHHHHHHHH
Confidence 678899999999888777644322111100 0 0111 1134556664 66677777777
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 131 HLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 131 RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
|...||+..+++..++..|+.-++
T Consensus 94 Rn~ELE~elr~~~~~~~~L~~Ev~ 117 (248)
T PF08172_consen 94 RNAELEEELRKQQQTISSLRREVE 117 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777776665
No 49
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=70.74 E-value=53 Score=31.87 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=14.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~ 96 (165)
......||.++..+..++++|+.
T Consensus 156 ~~~~~~Le~e~~~l~~~v~~l~~ 178 (546)
T PF07888_consen 156 LKENEQLEEEVEQLREEVERLEA 178 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33556666676666666666654
No 50
>KOG0249|consensus
Probab=69.47 E-value=32 Score=34.94 Aligned_cols=69 Identities=20% Similarity=0.312 Sum_probs=31.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhcccC-CCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 76 LVSQLESKNREIMREIARLRRQQELEGVCA-SGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 76 lIa~LE~eNR~l~~EieRLr~q~e~~~~~~-~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
-+.+|+..|-++-+|+.|.+..-+...... ....+-++.++ -|+ -.||++||+-|+ |..+|+.+++.|.
T Consensus 164 r~~kl~~~~qe~naeL~rarqreemneeh~~rlsdtvdErlq------lhl---kermaAle~kn~-L~~e~~s~kk~l~ 233 (916)
T KOG0249|consen 164 RTRKLEEQLEELNAELQRARQREKMNEEHNKRLSDTVDERLQ------LHL---KERMAALEDKNR-LEQELESVKKQLE 233 (916)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhccccccccHHHHH------HHH---HHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 445555555555555555555333221111 11112223332 232 246777777665 5555555554443
No 51
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription. The PspA protein, a negative regulator of the Escherichia coli phage shock psp operon, is produced when virulence factors are exported through secretins in many Gram-negative pathogenic bacteria and its homologue in plants, VIPP1, plays a critical role in thylakoid biogenesis, essential for photosynthesis. Activation of transcription by the enhancer-dependent bacterial sigma54-containing RNA polymerase occurs through ATP hydrolysis-driven protein conformational changes enabled by activator proteins that belong to the large AAA(+) mechanochemical protein family. It has been shown that PspA directly and specifically acts upon and binds to the AAA(+) domain of the PspF transcription activator [].
Probab=69.31 E-value=60 Score=26.36 Aligned_cols=41 Identities=27% Similarity=0.283 Sum_probs=23.6
Q ss_pred CChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4946 110 DNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLL 153 (165)
Q Consensus 110 ~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL 153 (165)
.+.+|..+|= ++|..+|.....|+..-.++..+...|+.-|
T Consensus 81 g~edLAr~al---~~k~~~e~~~~~l~~~~~~~~~~~~~l~~~l 121 (221)
T PF04012_consen 81 GREDLAREAL---QRKADLEEQAERLEQQLDQAEAQVEKLKEQL 121 (221)
T ss_pred CCHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556655544 5566666666666666666555555555443
No 52
>PF12808 Mto2_bdg: Micro-tubular organiser Mto1 C-term Mto2-binding region; InterPro: IPR024545 This domain occurs at the C terminus of microtubule organising proteins in both budding and fission fungi. In Schizosaccharomyces pombe it has been shown to interact with the Mto2p protein, an interaction which is critical for anchoring the cytokinetic actin ring to the medial region of the cell and for proper coordination of mitosis with cytokinesis [, ].
Probab=69.15 E-value=8.9 Score=26.20 Aligned_cols=25 Identities=44% Similarity=0.619 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~ 96 (165)
.-+.=|.+|+.||+.|.+|+++++.
T Consensus 26 ~a~~rl~~l~~EN~~Lr~eL~~~r~ 50 (52)
T PF12808_consen 26 AARKRLSKLEGENRLLRAELERLRS 50 (52)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3566789999999999999999875
No 53
>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation. It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.
Probab=68.69 E-value=28 Score=24.89 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=24.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLA 133 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~ 133 (165)
+++.=|..+=+-..-|+.|+++|+.+...-. ..+..|-.|..-|++-..-...|..
T Consensus 8 ~LE~ki~~aveti~~Lq~e~eeLke~n~~L~------~e~~~L~~en~~L~~e~~~~~~rl~ 63 (72)
T PF06005_consen 8 QLEEKIQQAVETIALLQMENEELKEKNNELK------EENEELKEENEQLKQERNAWQERLR 63 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445555555555432111 1233455555555544444444443
No 54
>smart00338 BRLZ basic region leucin zipper.
Probab=68.45 E-value=18 Score=24.34 Aligned_cols=32 Identities=28% Similarity=0.399 Sum_probs=21.8
Q ss_pred HhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 123 MRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 123 QhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
++-..||.+...|+..|..|..++..|..-+.
T Consensus 26 ~~~~~Le~~~~~L~~en~~L~~~~~~l~~e~~ 57 (65)
T smart00338 26 AEIEELERKVEQLEAENERLKKEIERLRRELE 57 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777777777777777777776665443
No 55
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=67.51 E-value=47 Score=24.49 Aligned_cols=58 Identities=26% Similarity=0.401 Sum_probs=32.7
Q ss_pred HHHHHhhhhH-------HHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHH---
Q psy4946 76 LVSQLESKNR-------EIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQ--- 145 (165)
Q Consensus 76 lIa~LE~eNR-------~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~Q--- 145 (165)
++.+||.|-. -|+-||+.||.+.. .|-.|+.-+++....||.+ |.||..+
T Consensus 5 v~ekLE~KiqqAvdTI~LLQmEieELKEknn-------------~l~~e~q~~q~~reaL~~e-------neqlk~e~~~ 64 (79)
T COG3074 5 VFEKLEAKVQQAIDTITLLQMEIEELKEKNN-------------SLSQEVQNAQHQREALERE-------NEQLKEEQNG 64 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-------------HhHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 4445665543 37788888887652 3445555555555544444 4444443
Q ss_pred -HHHHHHHH
Q psy4946 146 -LEGLMRLL 153 (165)
Q Consensus 146 -LerLr~LL 153 (165)
-+|||.||
T Consensus 65 WQerlrsLL 73 (79)
T COG3074 65 WQERLRALL 73 (79)
T ss_pred HHHHHHHHH
Confidence 35667666
No 56
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=67.38 E-value=68 Score=31.81 Aligned_cols=81 Identities=27% Similarity=0.315 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhc-ccCC---CCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEG-VCAS---GFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLE 147 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~-~~~~---~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLe 147 (165)
..+..+..|+++|++|.+++++++.+-+.-. -+.. .....--.=-|++.+.-+-.+|+.+...=..-..+|+--|.
T Consensus 426 ~~~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~ 505 (652)
T COG2433 426 KLEETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLA 505 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999888887554211 0000 00001112234555556666676666666666778888888
Q ss_pred HHHHH
Q psy4946 148 GLMRL 152 (165)
Q Consensus 148 rLr~L 152 (165)
+|+++
T Consensus 506 ~l~k~ 510 (652)
T COG2433 506 ELRKM 510 (652)
T ss_pred HHHHH
Confidence 88754
No 57
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=67.33 E-value=7.3 Score=27.83 Aligned_cols=24 Identities=29% Similarity=0.392 Sum_probs=19.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhh
Q psy4946 77 VSQLESKNREIMREIARLRRQQEL 100 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e~ 100 (165)
+++|++...-|+.||+||+.+--.
T Consensus 27 V~El~eRIalLq~EIeRlkAe~~k 50 (65)
T COG5509 27 VAELEERIALLQAEIERLKAELAK 50 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 458888888999999999987643
No 58
>smart00340 HALZ homeobox associated leucin zipper.
Probab=67.30 E-value=10 Score=25.29 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=20.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~ 98 (165)
++--..|-+|||-|++|++.||...
T Consensus 11 Krcce~LteeNrRL~ke~~eLralk 35 (44)
T smart00340 11 KRCCESLTEENRRLQKEVQELRALK 35 (44)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4455678889999999999999754
No 59
>PRK11637 AmiB activator; Provisional
Probab=67.27 E-value=96 Score=27.98 Aligned_cols=40 Identities=25% Similarity=0.267 Sum_probs=23.5
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 115 MSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 115 laEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
-.++..+.+.-..++.++..++..-.+++.+|..+...|+
T Consensus 88 ~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 88 SRKLRETQNTLNQLNKQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556666666666666666666666666555554
No 60
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=67.20 E-value=31 Score=25.55 Aligned_cols=56 Identities=23% Similarity=0.358 Sum_probs=41.8
Q ss_pred ccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHH
Q psy4946 67 LDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASL 135 (165)
Q Consensus 67 ~d~~~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iL 135 (165)
+|...=++-=|.+|.++|-.+..|++.++..++ +|..|..-|++-..-...|...|
T Consensus 17 vdtI~LLqmEieELKekn~~L~~e~~~~~~~r~-------------~L~~en~qLk~E~~~WqerLr~L 72 (79)
T PRK15422 17 IDTITLLQMEIEELKEKNNSLSQEVQNAQHQRE-------------ELERENNHLKEQQNGWQERLQAL 72 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444455588999999999999998886553 68888888888887777777655
No 61
>PRK10963 hypothetical protein; Provisional
Probab=67.00 E-value=6.2 Score=32.94 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=12.9
Q ss_pred HHHHHHhHhHHHHHHHHHHHh
Q psy4946 118 LRALRMRKDELESHLASLQDS 138 (165)
Q Consensus 118 arlLRQhK~rLE~RM~iLedh 138 (165)
...||++-.+||.++..|=+.
T Consensus 46 ~~~LR~r~~~Le~~l~~Li~~ 66 (223)
T PRK10963 46 MARQRNHIHVLEEEMTLLMEQ 66 (223)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445666666666666666543
No 62
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=66.65 E-value=14 Score=26.10 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~ 98 (165)
..++.-|++|+++|+.|..|=..||..-
T Consensus 17 evLK~~I~eL~~~n~~Le~EN~~Lk~~~ 44 (59)
T PF01166_consen 17 EVLKEQIAELEERNSQLEEENNLLKQNA 44 (59)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4679999999999999999999999854
No 63
>PRK09039 hypothetical protein; Validated
Probab=65.86 E-value=86 Score=28.03 Aligned_cols=86 Identities=20% Similarity=0.174 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcc--cC-----------------CCCCCCh---hHHHHHHHHHHhHhH
Q psy4946 70 SRAQRELVSQLESKNREIMREIARLRRQQELEGV--CA-----------------SGFEDNP---ALMSELRALRMRKDE 127 (165)
Q Consensus 70 ~~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~--~~-----------------~~~~~~~---eLlaEarlLRQhK~r 127 (165)
+..++..|++|...-+.+.++-.+|+........ .+ .-+..+| .|=+|+-.||..-..
T Consensus 76 ~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~ 155 (343)
T PRK09039 76 NQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAA 155 (343)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 3466777777777766777766666664321100 00 0011223 466788889999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 128 LESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 128 LE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
||+.....|...++..+|++.|.+.|..
T Consensus 156 le~~L~~ae~~~~~~~~~i~~L~~~L~~ 183 (343)
T PRK09039 156 LEAALDASEKRDRESQAKIADLGRRLNV 183 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998887764
No 64
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=65.49 E-value=45 Score=23.55 Aligned_cols=40 Identities=25% Similarity=0.304 Sum_probs=34.3
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 116 SELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 116 aEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
.+.+.||+-.+....+.+..=+.+.+|...++.|++-|+.
T Consensus 26 ~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~ 65 (69)
T PF14197_consen 26 IENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEE 65 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888999999999999999999999988764
No 65
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=64.43 E-value=1e+02 Score=27.25 Aligned_cols=27 Identities=22% Similarity=0.355 Sum_probs=18.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 73 QRELVSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 73 ~~~lIa~LE~eNR~l~~EieRLr~q~e 99 (165)
+.+-+..||.++-++.+|+..|+.+..
T Consensus 62 l~~eL~~LE~e~~~l~~el~~le~e~~ 88 (314)
T PF04111_consen 62 LLQELEELEKEREELDQELEELEEELE 88 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666777777777777776554
No 66
>PF13864 Enkurin: Calmodulin-binding
Probab=63.90 E-value=23 Score=25.90 Aligned_cols=52 Identities=25% Similarity=0.357 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHH
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRR 140 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnR 140 (165)
.+..++|..|-..-.++..||.+|=.- .+--..|.||..||.+|..||+.-+
T Consensus 40 eER~~lL~~Lk~~~~el~~ey~~lp~~------------------~DT~~~~~rK~~lE~~L~qlE~dI~ 91 (98)
T PF13864_consen 40 EERQELLEGLKKNWDELNKEYQKLPFS------------------IDTLRKKRRKEELEKELKQLEKDIK 91 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCcc------------------cCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 455679999999999999999865321 1112578999999999987776543
No 67
>KOG0996|consensus
Probab=63.42 E-value=51 Score=34.95 Aligned_cols=42 Identities=26% Similarity=0.374 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 113 ALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 113 eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
.|..+++-+++.+.++|.++..-++..+++..++..++.-++
T Consensus 960 ~L~e~~~~~~~k~~E~~~~~~e~~~~~~E~k~~~~~~k~~~e 1001 (1293)
T KOG0996|consen 960 DLTEELKGLEEKAAELEKEYKEAEESLKEIKKELRDLKSELE 1001 (1293)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999999999887765
No 68
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=63.34 E-value=72 Score=31.65 Aligned_cols=6 Identities=33% Similarity=0.861 Sum_probs=2.7
Q ss_pred CCCchh
Q psy4946 34 RLDDEH 39 (165)
Q Consensus 34 ~~DeEH 39 (165)
+.+|.|
T Consensus 337 ~~~ddH 342 (652)
T COG2433 337 SVSDDH 342 (652)
T ss_pred CCCCch
Confidence 344444
No 69
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=62.85 E-value=49 Score=32.84 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=18.1
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~ 96 (165)
.+.+.+|.+||++-+++..+.+.++.
T Consensus 511 ~~~~~li~~L~~~~~~~e~~~~~~~~ 536 (771)
T TIGR01069 511 EEINVLIEKLSALEKELEQKNEHLEK 536 (771)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999998877766655555544
No 70
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=62.61 E-value=29 Score=23.29 Aligned_cols=29 Identities=28% Similarity=0.463 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 126 DELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 126 ~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
..||.++..|+.-|.+|..++..|...+.
T Consensus 29 ~~Le~~~~~L~~en~~L~~~~~~L~~~~~ 57 (64)
T PF00170_consen 29 EELEEKVEELESENEELKKELEQLKKEIQ 57 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56777888888888888877777776654
No 71
>KOG0971|consensus
Probab=61.94 E-value=77 Score=33.23 Aligned_cols=48 Identities=23% Similarity=0.341 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHh----------HHHHHHHHHHHHHHHhhcCCC
Q psy4946 112 PALMSELRALRMRKDELESHLASLQDS----------RRHLMVQLEGLMRLLKTHQGT 159 (165)
Q Consensus 112 ~eLlaEarlLRQhK~rLE~RM~iLedh----------nRQLe~QLerLr~LL~~~~~~ 159 (165)
-+|..|+..+-=|+.+|+.|...-++| =|+|+.+|+.--+.+..+..+
T Consensus 493 ~DLreEld~~~g~~kel~~r~~aaqet~yDrdqTI~KfRelva~Lqdqlqe~~dq~~S 550 (1243)
T KOG0971|consen 493 LDLREELDMAKGARKELQKRVEAAQETVYDRDQTIKKFRELVAHLQDQLQELTDQQES 550 (1243)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 479999999999999999998888776 378888888877777765543
No 72
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=61.87 E-value=2.6 Score=40.60 Aligned_cols=24 Identities=38% Similarity=0.630 Sum_probs=0.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 76 LVSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 76 lIa~LE~eNR~l~~EieRLr~q~e 99 (165)
=|..||.+|+.+..|+..||..++
T Consensus 258 ~i~~LE~en~~l~~Elk~Lr~~~~ 281 (722)
T PF05557_consen 258 HIRELEKENRRLREELKHLRQSQE 281 (722)
T ss_dssp ------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 367899999999999999998775
No 73
>KOG0977|consensus
Probab=61.23 E-value=33 Score=33.23 Aligned_cols=84 Identities=21% Similarity=0.264 Sum_probs=65.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy4946 73 QRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRL 152 (165)
Q Consensus 73 ~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~L 152 (165)
++.=+++||..|.-|-+.|+.|+.+-....-.-.. .=.+.-+++.-+|..-..|-..|+.|=|..-.|-..+..-|+|
T Consensus 308 Lr~klselE~~n~~L~~~I~dL~~ql~e~~r~~e~--~L~~kd~~i~~mReec~~l~~Elq~LlD~ki~Ld~EI~~YRkL 385 (546)
T KOG0977|consen 308 LRAKLSELESRNSALEKRIEDLEYQLDEDQRSFEQ--ALNDKDAEIAKMREECQQLSVELQKLLDTKISLDAEIAAYRKL 385 (546)
T ss_pred hhhhhccccccChhHHHHHHHHHhhhhhhhhhhhh--hhhhHHHHHHHHHHHHHHHHHHHHHhhchHhHHHhHHHHHHHH
Confidence 34457899999999999999999986532211000 1113457788899999999999999999999999999999999
Q ss_pred HhhcCC
Q psy4946 153 LKTHQG 158 (165)
Q Consensus 153 L~~~~~ 158 (165)
|.....
T Consensus 386 Legee~ 391 (546)
T KOG0977|consen 386 LEGEEE 391 (546)
T ss_pred hccccC
Confidence 995443
No 74
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=61.10 E-value=29 Score=26.14 Aligned_cols=35 Identities=11% Similarity=0.187 Sum_probs=25.5
Q ss_pred HHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 117 ELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 117 EarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
...-+++....++++...|++.|.+|..++++|..
T Consensus 28 ~~~~l~~q~~~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 28 DYWRVNDQVAAQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 34566677777777777888888888888777753
No 75
>KOG1853|consensus
Probab=60.97 E-value=75 Score=28.75 Aligned_cols=85 Identities=25% Similarity=0.317 Sum_probs=42.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccc---C--CCCCCChhHHHHHH-------HHHHhHhHHHHHHHHHHHh
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRRQQELEGVC---A--SGFEDNPALMSELR-------ALRMRKDELESHLASLQDS 138 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~---~--~~~~~~~eLlaEar-------lLRQhK~rLE~RM~iLedh 138 (165)
.+++.-+-+||-.||.++.+.+||+-+++.--.- + ....+-..|-.++- -||..-.+||++--.||-.
T Consensus 48 aelesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e~q~~q~y~q~s~Leddlsqt~aikeql~kyiReLEQaNDdLEra 127 (333)
T KOG1853|consen 48 AELESQLDQLETRNRDLETRNQRLTTEQERNKEKQEDQRVQFYQQESQLEDDLSQTHAIKEQLRKYIRELEQANDDLERA 127 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHh
Confidence 3455556667777777776666666544311000 0 00001112223333 3445555566666666655
Q ss_pred HHHHHHHHHHHHHHHhh
Q psy4946 139 RRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 139 nRQLe~QLerLr~LL~~ 155 (165)
.|--..-|+.+-+-|++
T Consensus 128 kRati~sleDfeqrLnq 144 (333)
T KOG1853|consen 128 KRATIYSLEDFEQRLNQ 144 (333)
T ss_pred hhhhhhhHHHHHHHHHH
Confidence 55555667776666653
No 76
>KOG4196|consensus
Probab=60.65 E-value=17 Score=29.32 Aligned_cols=20 Identities=20% Similarity=0.579 Sum_probs=14.1
Q ss_pred HHhhhhHHHHHHHHHHHHHH
Q psy4946 79 QLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 79 ~LE~eNR~l~~EieRLr~q~ 98 (165)
+||.+|..|.+|+++|+.+.
T Consensus 78 eLE~~k~~L~qqv~~L~~e~ 97 (135)
T KOG4196|consen 78 ELEKEKAELQQQVEKLKEEN 97 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777777643
No 77
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=60.09 E-value=1e+02 Score=26.51 Aligned_cols=31 Identities=16% Similarity=0.194 Sum_probs=21.1
Q ss_pred HHhHhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy4946 122 RMRKDELESHLASLQDSRRHLMVQLEGLMRL 152 (165)
Q Consensus 122 RQhK~rLE~RM~iLedhnRQLe~QLerLr~L 152 (165)
++.+..++++-..+++|.++|+.+++.-++-
T Consensus 228 ~~~~~~le~~~~~~ee~~~~L~ekme~e~~~ 258 (297)
T PF02841_consen 228 KEQEQMLEQQERSYEEHIKQLKEKMEEEREQ 258 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555556677777777777777777766653
No 78
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=59.96 E-value=30 Score=25.77 Aligned_cols=31 Identities=29% Similarity=0.523 Sum_probs=26.2
Q ss_pred HHHHHHhHhHHHHHHHHHHHhHHHHHHHHHH
Q psy4946 118 LRALRMRKDELESHLASLQDSRRHLMVQLEG 148 (165)
Q Consensus 118 arlLRQhK~rLE~RM~iLedhnRQLe~QLer 148 (165)
+-.|-++.+.|.++++.|-++|||.-.+++.
T Consensus 42 LD~LE~rnD~l~~~L~~LLesnrq~R~e~~~ 72 (83)
T PF03670_consen 42 LDHLEQRNDHLHAQLQELLESNRQIRLEFQE 72 (83)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 5577899999999999999999998877654
No 79
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=59.91 E-value=85 Score=24.78 Aligned_cols=32 Identities=31% Similarity=0.433 Sum_probs=18.6
Q ss_pred HhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 123 MRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 123 QhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
.+...+.....-++....+|..+++.+..+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~ 189 (191)
T PF04156_consen 158 EEVQELRSQLERLQENLQQLEEKIQELQELLE 189 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55555555555556666666666665555554
No 80
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=59.55 E-value=61 Score=32.19 Aligned_cols=76 Identities=14% Similarity=0.204 Sum_probs=39.6
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHH-----HHHHHhHHHHHH
Q psy4946 70 SRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHL-----ASLQDSRRHLMV 144 (165)
Q Consensus 70 ~~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM-----~iLedhnRQLe~ 144 (165)
..+.+.+|.+||++-+++..+.+.+........ ....++-.+..-|.++|.++..+. +++++-+++.+.
T Consensus 515 ~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~------~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~ 588 (782)
T PRK00409 515 KEKLNELIASLEELERELEQKAEEAEALLKEAE------KLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADE 588 (782)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346788999999887776666655554332111 012234444445555555442222 345555555444
Q ss_pred HHHHHHH
Q psy4946 145 QLEGLMR 151 (165)
Q Consensus 145 QLerLr~ 151 (165)
-+..|++
T Consensus 589 ~i~~lk~ 595 (782)
T PRK00409 589 IIKELRQ 595 (782)
T ss_pred HHHHHHH
Confidence 4444443
No 81
>PRK09413 IS2 repressor TnpA; Reviewed
Probab=59.07 E-value=21 Score=26.76 Aligned_cols=22 Identities=9% Similarity=0.194 Sum_probs=14.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHH
Q psy4946 77 VSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~ 98 (165)
+..++++|+.|.+|+.+|+.+.
T Consensus 73 ~~~~~~ei~~L~~el~~L~~E~ 94 (121)
T PRK09413 73 LAAAMKQIKELQRLLGKKTMEN 94 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666666666666554
No 82
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=58.99 E-value=12 Score=27.56 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~ 96 (165)
..++..+..++.+|..|..+|+.+|.
T Consensus 83 ~~L~~~l~~l~~eN~~L~~~i~~~r~ 108 (109)
T PF03980_consen 83 EQLNARLQELEEENEALAEEIQEQRK 108 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 36688999999999999999998875
No 83
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=57.41 E-value=1.6e+02 Score=27.24 Aligned_cols=86 Identities=15% Similarity=0.094 Sum_probs=53.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhccc------CC-C----CCCC-hhHHHHHHHHHHhHhHHHHHHHHHHHhH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVC------AS-G----FEDN-PALMSELRALRMRKDELESHLASLQDSR 139 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~------~~-~----~~~~-~eLlaEarlLRQhK~rLE~RM~iLedhn 139 (165)
+++.=|.+|+.+-+.+..++..++.+-..-... +. + ...+ .++.+-+..++++..+|-+++..|+...
T Consensus 75 ~l~~~l~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (525)
T TIGR02231 75 ELRKQIRELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRI 154 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555555433211110 00 0 0112 3477777788888888888888899888
Q ss_pred HHHHHHHHHHHHHHhhcC
Q psy4946 140 RHLMVQLEGLMRLLKTHQ 157 (165)
Q Consensus 140 RQLe~QLerLr~LL~~~~ 157 (165)
++|..+|+.|++-|..-.
T Consensus 155 ~~~~~~l~~l~~~l~~l~ 172 (525)
T TIGR02231 155 RELEKQLSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999988888876544
No 84
>PRK00888 ftsB cell division protein FtsB; Reviewed
Probab=57.32 E-value=16 Score=27.59 Aligned_cols=25 Identities=28% Similarity=0.509 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~ 96 (165)
+++.-+++|+.+|..|..||++|+.
T Consensus 38 ~~~~e~~~l~~~n~~L~~eI~~L~~ 62 (105)
T PRK00888 38 AQQQTNAKLKARNDQLFAEIDDLKG 62 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 4455677788888888888888875
No 85
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=57.05 E-value=98 Score=26.94 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 128 LESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 128 LE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
|+..|+++++....|+.+|.+||..+.
T Consensus 94 L~~E~~~ak~r~~~le~el~~l~~~~~ 120 (239)
T COG1579 94 LNIEIQIAKERINSLEDELAELMEEIE 120 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666655443
No 86
>cd01106 HTH_TipAL-Mta Helix-Turn-Helix DNA binding domain of the transcription regulators TipAL, Mta, and SkgA. Helix-turn-helix (HTH) TipAL, Mta, and SkgA transcription regulators, and related proteins, N-terminal domain. TipAL regulates resistance to and activation by numerous cyclic thiopeptide antibiotics, such as thiostrepton. Mta is a global transcriptional regulator; the N-terminal DNA-binding domain of Mta interacts directly with the promoters of mta, bmr, blt, and ydfK, and induces transcription of these multidrug-efflux transport genes. SkgA has been shown to control stationary-phase expression of catalase-peroxidase in Caulobacter crescentus. These proteins are comprised of distinct domains that harbor an N-terminal active (DNA-binding) site and a regulatory (effector-binding) site. The conserved N-terminal domain of these transcription regulators contains winged HTH motifs that mediate DNA binding. These proteins share the N-terminal DNA binding domain with other transcrip
Probab=57.00 E-value=36 Score=24.65 Aligned_cols=26 Identities=31% Similarity=0.420 Sum_probs=18.2
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 129 ESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 129 E~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
+.+..+|+++..+|..|+.+|...+.
T Consensus 72 ~~~~~~l~~~~~~l~~~i~~l~~~~~ 97 (103)
T cd01106 72 EDLLEALREQKELLEEKKERLDKLIK 97 (103)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777777777777777766554
No 87
>KOG2391|consensus
Probab=56.90 E-value=51 Score=30.54 Aligned_cols=59 Identities=27% Similarity=0.287 Sum_probs=39.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQ 145 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~Q 145 (165)
+.|=...|+|--.+++|++-||.-+| +|..-.+-|+--|++||++|+.|+..-.=|..-
T Consensus 217 eklR~r~eeeme~~~aeq~slkRt~E-------------eL~~G~~kL~~~~etLEqq~~~L~~niDIL~~k 275 (365)
T KOG2391|consen 217 EKLRRRREEEMERLQAEQESLKRTEE-------------ELNIGKQKLVAMKETLEQQLQSLQKNIDILKSK 275 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHH-------------HHHhhHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34555666666667777777776554 344445566778899999999998765444443
No 88
>KOG0612|consensus
Probab=56.62 E-value=90 Score=33.35 Aligned_cols=77 Identities=21% Similarity=0.252 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
++-+-.+.+|+.+++|...|++++.+-.... -.+-..+..+++-.-..-..+|++-+.|+..+++|+-+|+.+++
T Consensus 455 ~~~~~~~~~~~~~keL~e~i~~lk~~~~el~-----~~q~~l~q~~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~ 529 (1317)
T KOG0612|consen 455 EKCQAVAELEEMDKELEETIEKLKSEESELQ-----REQKALLQHEQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQK 529 (1317)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566778888888888888876432110 00000122222222233344445555555555555555555544
Q ss_pred HH
Q psy4946 152 LL 153 (165)
Q Consensus 152 LL 153 (165)
-.
T Consensus 530 ~~ 531 (1317)
T KOG0612|consen 530 KN 531 (1317)
T ss_pred HH
Confidence 43
No 89
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=56.27 E-value=1.1e+02 Score=29.69 Aligned_cols=27 Identities=30% Similarity=0.452 Sum_probs=12.8
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHhHH
Q psy4946 114 LMSELRALRMRKDELESHLASLQDSRR 140 (165)
Q Consensus 114 LlaEarlLRQhK~rLE~RM~iLedhnR 140 (165)
|..+..-++++...||..+..|....+
T Consensus 211 L~~q~~e~~~ri~~LEedi~~l~qk~~ 237 (546)
T PF07888_consen 211 LKEQLAEARQRIRELEEDIKTLTQKEK 237 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444555555555555544443
No 90
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=56.13 E-value=45 Score=22.35 Aligned_cols=33 Identities=21% Similarity=0.321 Sum_probs=26.0
Q ss_pred HHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy4946 117 ELRALRMRKDELESHLASLQDSRRHLMVQLEGL 149 (165)
Q Consensus 117 EarlLRQhK~rLE~RM~iLedhnRQLe~QLerL 149 (165)
...-+++....|+.+...++..|.+|..+++.|
T Consensus 18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455666777788888888888888888888877
No 91
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=55.43 E-value=61 Score=28.95 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=10.7
Q ss_pred HHHhHHHHHHHHHHHHHHHhhc
Q psy4946 135 LQDSRRHLMVQLEGLMRLLKTH 156 (165)
Q Consensus 135 LedhnRQLe~QLerLr~LL~~~ 156 (165)
|+.....|..||.....||..+
T Consensus 152 L~~e~~~Lre~L~~rdeli~kh 173 (302)
T PF09738_consen 152 LREELDELREQLKQRDELIEKH 173 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHC
Confidence 3444444555555555555543
No 92
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=55.41 E-value=1.3e+02 Score=25.59 Aligned_cols=72 Identities=22% Similarity=0.350 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHH-------HHHHHHHHhHHHH
Q psy4946 70 SRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELE-------SHLASLQDSRRHL 142 (165)
Q Consensus 70 ~~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE-------~RM~iLedhnRQL 142 (165)
-..++..+..||++|+.|++.-..+..++. .|+++.--|..-++.|= -|+.-|..-+.-|
T Consensus 69 ledLk~~~~~lEE~~~~L~aq~rqlEkE~q-------------~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~L 135 (193)
T PF14662_consen 69 LEDLKTLAKSLEEENRSLLAQARQLEKEQQ-------------SLVAEIETLQEENGKLLAERDGLKKRSKELATEKATL 135 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHH
Confidence 356788999999999999998888877553 34555554444444433 3444555555556
Q ss_pred HHHHHHHHHHHh
Q psy4946 143 MVQLEGLMRLLK 154 (165)
Q Consensus 143 e~QLerLr~LL~ 154 (165)
-.|+...-.++.
T Consensus 136 q~Ql~~~e~l~~ 147 (193)
T PF14662_consen 136 QRQLCEFESLIC 147 (193)
T ss_pred HHHHHHHHHHHH
Confidence 667655555554
No 93
>PRK10884 SH3 domain-containing protein; Provisional
Probab=55.19 E-value=1.3e+02 Score=25.36 Aligned_cols=19 Identities=21% Similarity=0.252 Sum_probs=7.1
Q ss_pred HHHHHHHHHHhHhHHHHHH
Q psy4946 114 LMSELRALRMRKDELESHL 132 (165)
Q Consensus 114 LlaEarlLRQhK~rLE~RM 132 (165)
|-.|+..++..-+.|++..
T Consensus 144 L~~~l~~~~~~~~~l~~~~ 162 (206)
T PRK10884 144 LKNQLIVAQKKVDAANLQL 162 (206)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333
No 94
>KOG2685|consensus
Probab=55.12 E-value=1.2e+02 Score=28.78 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccC------------------CCCCCChhHHHHHHH-------HHHhHh
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVCA------------------SGFEDNPALMSELRA-------LRMRKD 126 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~------------------~~~~~~~eLlaEarl-------LRQhK~ 126 (165)
++..=+.+|..|+-.|+.++.||+...+..+.|- .....+.+|+.|+-+ |.++-+
T Consensus 88 el~~ele~l~~E~~~L~~~k~rle~~L~~~~~P~~ia~eCL~~RekR~~~dlv~D~Ve~EL~kE~eli~~~q~ll~~~~~ 167 (421)
T KOG2685|consen 88 ELDRELEDLAAEIDDLLHEKRRLERALNALALPLSIAEECLAHREKRQGIDLVHDEVETELHKEVELIENIQELLKKTLE 167 (421)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHhhcccchhhccccHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4455677888899999999999998776544321 034567788888754 566667
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4946 127 ELESHLASLQDSRRHLMVQLEGLMRLL 153 (165)
Q Consensus 127 rLE~RM~iLedhnRQLe~QLerLr~LL 153 (165)
+-+.++..+++++..|+.-|..=+.-+
T Consensus 168 ~a~~Ql~~nr~ar~~Le~Dl~dK~eA~ 194 (421)
T KOG2685|consen 168 RAEEQLRLNREARQNLERDLSDKQEAY 194 (421)
T ss_pred HHHHHHHHhHHHHHHHhhhhhhhhhhh
Confidence 778899999999999998877655544
No 95
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=54.96 E-value=30 Score=24.16 Aligned_cols=28 Identities=36% Similarity=0.567 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e 99 (165)
..+.-+.+-|.+|+.|..||++|+.+-+
T Consensus 29 ~~e~kLqeaE~rn~eL~~ei~~L~~e~e 56 (61)
T PF08826_consen 29 AFESKLQEAEKRNRELEQEIERLKKEME 56 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566777788888888888887654
No 96
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=54.65 E-value=29 Score=23.24 Aligned_cols=26 Identities=35% Similarity=0.609 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQ 97 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q 97 (165)
+++.-+..|+.+|..|..++..|+.+
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~L~~~ 55 (64)
T PF00170_consen 30 ELEEKVEELESENEELKKELEQLKKE 55 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555555543
No 97
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=54.35 E-value=1.2e+02 Score=24.89 Aligned_cols=17 Identities=35% Similarity=0.520 Sum_probs=6.6
Q ss_pred HHHHHhhhhHHHHHHHH
Q psy4946 76 LVSQLESKNREIMREIA 92 (165)
Q Consensus 76 lIa~LE~eNR~l~~Eie 92 (165)
-|.++-.+|..+..+|+
T Consensus 28 ~l~~~~~~~~~l~~~i~ 44 (302)
T PF10186_consen 28 ELQQLKEENEELRRRIE 44 (302)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333334444433333
No 98
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=53.99 E-value=1.2e+02 Score=27.02 Aligned_cols=39 Identities=18% Similarity=0.216 Sum_probs=19.2
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 116 SELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 116 aEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
+|...++.+-.+||-.-+-|++-.+-|.-...+|++-+.
T Consensus 163 ~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ 201 (290)
T COG4026 163 AEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWD 201 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHH
Confidence 334444444455555555555555555545555554444
No 99
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=53.59 E-value=1.7e+02 Score=26.23 Aligned_cols=71 Identities=31% Similarity=0.402 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLM 150 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr 150 (165)
.+++.-++++|+|-|.-|-.+.+|..+.. .|+-+..+|...-.+||.-+.-|+...++.--.|++++
T Consensus 80 r~lk~~l~evEekyrkAMv~naQLDNek~-------------~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K 146 (302)
T PF09738_consen 80 RDLKDSLAEVEEKYRKAMVSNAQLDNEKS-------------ALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQK 146 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhchHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788899999999999999999887553 58888999988888999988888888777777777776
Q ss_pred HHHh
Q psy4946 151 RLLK 154 (165)
Q Consensus 151 ~LL~ 154 (165)
..++
T Consensus 147 ~~~d 150 (302)
T PF09738_consen 147 RAHD 150 (302)
T ss_pred HHHH
Confidence 6544
No 100
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=53.38 E-value=1.5e+02 Score=29.89 Aligned_cols=87 Identities=21% Similarity=0.275 Sum_probs=66.1
Q ss_pred chHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCC--C------------CCCChhHHHHHHHHHHhHhHHHHHHHH
Q psy4946 69 TSRAQRELVSQLESKNREIMREIARLRRQQELEGVCAS--G------------FEDNPALMSELRALRMRKDELESHLAS 134 (165)
Q Consensus 69 ~~~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~--~------------~~~~~eLlaEarlLRQhK~rLE~RM~i 134 (165)
.+.....-|..|++|- .+++|+.||..+-+....... . ......+..|+.+||.--.+++.++..
T Consensus 68 e~q~~~~ei~~LqeEL-r~q~e~~rL~~~~e~~~~e~e~l~~ld~~~~q~~rl~~E~er~~~El~~lr~~lE~~q~~~e~ 146 (775)
T PF10174_consen 68 ENQKAQEEIQALQEEL-RAQRELNRLQQELEKAQYEFESLQELDKAQEQFERLQAERERLQRELERLRKTLEELQLRIET 146 (775)
T ss_pred hHHHHHHHHHHHHHHH-HHhhHHHHHHHHhhhcccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445567888999999 899999999987543221110 0 013445789999999999999999999
Q ss_pred HHHhHHHHHHHHHHHHHHHhhc
Q psy4946 135 LQDSRRHLMVQLEGLMRLLKTH 156 (165)
Q Consensus 135 LedhnRQLe~QLerLr~LL~~~ 156 (165)
++..+...-..+.+|...|...
T Consensus 147 ~q~~l~~~~eei~kL~e~L~~~ 168 (775)
T PF10174_consen 147 QQQTLDKADEEIEKLQEMLQSK 168 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999888533
No 101
>PRK11637 AmiB activator; Provisional
Probab=53.34 E-value=1.7e+02 Score=26.34 Aligned_cols=38 Identities=13% Similarity=0.138 Sum_probs=15.5
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4946 116 SELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLL 153 (165)
Q Consensus 116 aEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL 153 (165)
.++..+.+.-..++..+..++..-.+|+.++..+..-|
T Consensus 82 ~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l 119 (428)
T PRK11637 82 EAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ 119 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333334444444444444444444444444444333
No 102
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=53.29 E-value=25 Score=29.67 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=10.7
Q ss_pred HHHHHHHHHHHHHhhcC
Q psy4946 141 HLMVQLEGLMRLLKTHQ 157 (165)
Q Consensus 141 QLe~QLerLr~LL~~~~ 157 (165)
+|..+.++|+++|+-..
T Consensus 97 ~l~~en~~L~~lL~~~~ 113 (276)
T PRK13922 97 QLEAENARLRELLNLKE 113 (276)
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 35566677777776433
No 103
>cd04769 HTH_MerR2 Helix-Turn-Helix DNA binding domain of MerR2-like transcription regulators. Helix-turn-helix (HTH) transcription regulator MerR2 and related proteins. MerR2 in Bacillus cereus RC607 regulates resistance to organomercurials. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=53.15 E-value=29 Score=25.77 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=28.2
Q ss_pred HHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 119 RALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 119 rlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
.+|.++...|++++..|++....|+.-+..++.
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~ 114 (116)
T cd04769 82 QALEDKKQEIRAQITELQQLLARLDAFEASLKD 114 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 588999999999999999999888887777654
No 104
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=52.89 E-value=2.1e+02 Score=29.69 Aligned_cols=83 Identities=28% Similarity=0.327 Sum_probs=45.2
Q ss_pred HHHHHHHHHhh------hhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHH------------------hHhH
Q psy4946 72 AQRELVSQLES------KNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRM------------------RKDE 127 (165)
Q Consensus 72 e~~~lIa~LE~------eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQ------------------hK~r 127 (165)
.++.=|++|+. ++|....||+++....-... +.-....|.+.++++.+++ .+.+
T Consensus 775 ~l~~~i~~L~~~l~~ie~~r~~V~eY~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 852 (1201)
T PF12128_consen 775 QLKQEIEQLEKELKRIEERRAEVIEYEDWLQEEWDKV--DELREEKPELEEQLRDLEQELQELEQELNQLQKEVKQRRKE 852 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhh--hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555554 46677888888865432110 0011234555555555544 4455
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Q psy4946 128 LESHLASLQDSRRHLMVQLEGLMRLLKTH 156 (165)
Q Consensus 128 LE~RM~iLedhnRQLe~QLerLr~LL~~~ 156 (165)
||+..+.+++.-.++...|.+|+.++...
T Consensus 853 le~~~~~~~~~~~~~~~~l~~l~~~~~~l 881 (1201)
T PF12128_consen 853 LEEELKALEEQLEQLEEQLRRLRDLLEKL 881 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 55555666666666666666666555554
No 105
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=52.85 E-value=19 Score=25.08 Aligned_cols=21 Identities=33% Similarity=0.360 Sum_probs=14.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHh
Q psy4946 79 QLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 79 ~LE~eNR~l~~EieRLr~q~e 99 (165)
+|++...-|..||.|++..-.
T Consensus 25 EL~~RIa~L~aEI~R~~~~~~ 45 (59)
T PF06698_consen 25 ELEERIALLEAEIARLEAAIA 45 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667777777778888876543
No 106
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=51.55 E-value=1.4e+02 Score=24.92 Aligned_cols=67 Identities=16% Similarity=0.224 Sum_probs=35.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
.....+.+.-..-...++.+..|..+.. +|.+|.+.|......|+....-|+..-..++.++..|.+
T Consensus 25 ~~~~~~~~~~~~~~~sQ~~id~~~~e~~-------------~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~ 91 (251)
T PF11932_consen 25 QAQQVQQQWVQAAQQSQKRIDQWDDEKQ-------------ELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQ 91 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445567777777766553 455666555555555555554444444444444444433
No 107
>PRK01156 chromosome segregation protein; Provisional
Probab=51.54 E-value=2.5e+02 Score=27.63 Aligned_cols=79 Identities=18% Similarity=0.257 Sum_probs=44.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHh---hhcccCC-CCCCChhHHHHHH-HHHHhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946 76 LVSQLESKNREIMREIARLRRQQE---LEGVCAS-GFEDNPALMSELR-ALRMRKDELESHLASLQDSRRHLMVQLEGLM 150 (165)
Q Consensus 76 lIa~LE~eNR~l~~EieRLr~q~e---~~~~~~~-~~~~~~eLlaEar-lLRQhK~rLE~RM~iLedhnRQLe~QLerLr 150 (165)
-|..|+.+-.++..++..|+.-.. ..+.||. +++-+.++..|+- -+.....+|+.+...|..-.+.|...+..+.
T Consensus 424 ~i~~l~~~i~~l~~~~~el~~~~~~l~~~~~Cp~c~~~~~~e~~~e~i~~~~~~i~~l~~~i~~l~~~~~~l~~~~~~~~ 503 (895)
T PRK01156 424 KVSSLNQRIRALRENLDELSRNMEMLNGQSVCPVCGTTLGEEKSNHIINHYNEKKSRLEEKIREIEIEVKDIDEKIVDLK 503 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555556666664322 2345664 4555577877761 1234445667777777776666666666555
Q ss_pred HHHh
Q psy4946 151 RLLK 154 (165)
Q Consensus 151 ~LL~ 154 (165)
..++
T Consensus 504 ~~~~ 507 (895)
T PRK01156 504 KRKE 507 (895)
T ss_pred HHHH
Confidence 4443
No 108
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=51.23 E-value=90 Score=27.40 Aligned_cols=25 Identities=24% Similarity=0.283 Sum_probs=17.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~ 98 (165)
+.|+..|++.-..|..+++.|...-
T Consensus 148 ~gl~~~L~~~~~~L~~D~~~L~~~~ 172 (325)
T PF08317_consen 148 EGLKEGLEENLELLQEDYAKLDKQL 172 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777777777777777777544
No 109
>smart00338 BRLZ basic region leucin zipper.
Probab=50.91 E-value=39 Score=22.64 Aligned_cols=27 Identities=41% Similarity=0.591 Sum_probs=15.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~ 98 (165)
+++.=+..|+.+|..|..++..|+.+.
T Consensus 30 ~Le~~~~~L~~en~~L~~~~~~l~~e~ 56 (65)
T smart00338 30 ELERKVEQLEAENERLKKEIERLRREL 56 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555566666666666666655543
No 110
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=50.45 E-value=1.1e+02 Score=23.45 Aligned_cols=22 Identities=27% Similarity=0.376 Sum_probs=10.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLR 95 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr 95 (165)
..-+..|++++..+.+|+.-+.
T Consensus 72 ~~~~~rL~~~~~~~ere~~~~~ 93 (151)
T PF11559_consen 72 QNDVERLKEQLEELERELASAE 93 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445544444444444333
No 111
>PF14282 FlxA: FlxA-like protein
Probab=49.11 E-value=1.1e+02 Score=22.95 Aligned_cols=59 Identities=17% Similarity=0.302 Sum_probs=39.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLL 153 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL 153 (165)
...|+.|+..-..|+.+|..|....+ |=+|-+ .++++.|+..=.+|+.||..|..-.
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~~~--------------~~~e~k---------~~q~q~Lq~QI~~LqaQI~qlq~q~ 74 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQDSD--------------LDAEQK---------QQQIQLLQAQIQQLQAQIAQLQSQQ 74 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcccC--------------CCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999988875321 112222 3566667777777777777776655
Q ss_pred hh
Q psy4946 154 KT 155 (165)
Q Consensus 154 ~~ 155 (165)
..
T Consensus 75 ~~ 76 (106)
T PF14282_consen 75 AE 76 (106)
T ss_pred HH
Confidence 53
No 112
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=48.62 E-value=1.9e+02 Score=26.22 Aligned_cols=86 Identities=23% Similarity=0.360 Sum_probs=63.2
Q ss_pred chHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-hhccc-------------------CCCCCCChhHHHHHHHHHHhHhHH
Q psy4946 69 TSRAQRELVSQLESKNREIMREIARLRRQQE-LEGVC-------------------ASGFEDNPALMSELRALRMRKDEL 128 (165)
Q Consensus 69 ~~~e~~~lIa~LE~eNR~l~~EieRLr~q~e-~~~~~-------------------~~~~~~~~eLlaEarlLRQhK~rL 128 (165)
.+..+-.++.+.-+.|+.|..|++-||.... ..+-+ .+....-..||.++--++..-..|
T Consensus 66 ~~~~La~lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qL 145 (319)
T PF09789_consen 66 ENKNLAQLLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQL 145 (319)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHH
Confidence 4567788899999999999999999988742 22210 011123457999999999999999
Q ss_pred HHHHHHHHHhHHHHHHH-------HHHHHHHHh
Q psy4946 129 ESHLASLQDSRRHLMVQ-------LEGLMRLLK 154 (165)
Q Consensus 129 E~RM~iLedhnRQLe~Q-------LerLr~LL~ 154 (165)
|--++.+-|--.++++. .+||-.-|.
T Consensus 146 e~d~qs~lDEkeEl~~ERD~yk~K~~RLN~ELn 178 (319)
T PF09789_consen 146 ERDLQSLLDEKEELVTERDAYKCKAHRLNHELN 178 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888877 455555554
No 113
>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants. XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.
Probab=48.33 E-value=66 Score=29.21 Aligned_cols=43 Identities=28% Similarity=0.434 Sum_probs=31.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHH
Q psy4946 77 VSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHL 132 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM 132 (165)
+..|..+|..|.+|.+||+.... .+++++.-+=..|.++|..+
T Consensus 139 ~~~l~~~~~~L~~enerL~~e~~-------------~~~~qlE~~v~~K~~~E~~L 181 (342)
T PF06632_consen 139 NSRLQAENEHLQKENERLESEAN-------------KLLKQLEKFVNAKEEHEEDL 181 (342)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHH
Confidence 56777788888888888876553 46667777777777777765
No 114
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=48.29 E-value=1.8e+02 Score=24.99 Aligned_cols=21 Identities=10% Similarity=0.260 Sum_probs=12.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIA 92 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~Eie 92 (165)
..+..|.+++.+...|..|..
T Consensus 29 ~ee~~L~e~~kE~~~L~~Er~ 49 (230)
T PF10146_consen 29 NEEKCLEEYRKEMEELLQERM 49 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 444566666666556655554
No 115
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=48.28 E-value=1.5e+02 Score=28.91 Aligned_cols=44 Identities=23% Similarity=0.314 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCCCC
Q psy4946 113 ALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQGTSPNS 163 (165)
Q Consensus 113 eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~~~~sp~s 163 (165)
.|..+++.|+..|...=.|.+.|+.+ |..|+.-+..+....|++
T Consensus 33 qmseev~~L~eEk~~~~~~V~eLE~s-------L~eLk~q~~~~~~~~~pa 76 (617)
T PF15070_consen 33 QMSEEVRTLKEEKEHDISRVQELERS-------LSELKNQMAEPPPPEPPA 76 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHhhcccCCccccc
Confidence 57778888888888877777665555 444444444444444433
No 116
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=48.23 E-value=1.7e+02 Score=24.90 Aligned_cols=20 Identities=25% Similarity=0.307 Sum_probs=8.7
Q ss_pred HHHHHhhhhHHHHHHHHHHH
Q psy4946 76 LVSQLESKNREIMREIARLR 95 (165)
Q Consensus 76 lIa~LE~eNR~l~~EieRLr 95 (165)
.|..|+++.+..+.|-.+|.
T Consensus 34 ~a~~Leek~k~aeeea~~Le 53 (246)
T PF00769_consen 34 TAEELEEKLKQAEEEAEELE 53 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444443
No 117
>PRK02224 chromosome segregation protein; Provisional
Probab=48.01 E-value=1.6e+02 Score=28.66 Aligned_cols=43 Identities=9% Similarity=0.085 Sum_probs=29.5
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 113 ALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 113 eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
++..++.-+....++|+....-|++-+.++..+|..++.-++.
T Consensus 596 ~~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~r~~i~~ 638 (880)
T PRK02224 596 TLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRE 638 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666666777777777777777777777777777766654
No 118
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=47.98 E-value=1.9e+02 Score=27.74 Aligned_cols=7 Identities=29% Similarity=0.487 Sum_probs=2.9
Q ss_pred HHHHHhh
Q psy4946 76 LVSQLES 82 (165)
Q Consensus 76 lIa~LE~ 82 (165)
++++|..
T Consensus 187 L~~dl~~ 193 (650)
T TIGR03185 187 LAGDLTN 193 (650)
T ss_pred HHHHHHH
Confidence 4444433
No 119
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=47.78 E-value=1.6e+02 Score=24.44 Aligned_cols=38 Identities=18% Similarity=0.104 Sum_probs=26.9
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy4946 115 MSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRL 152 (165)
Q Consensus 115 laEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~L 152 (165)
-.|+|.||.+-.+...+...++..-+....+|.++..-
T Consensus 67 ~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~ 104 (194)
T PF15619_consen 67 NEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDE 104 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899998888887777777777777666665554433
No 120
>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised. This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity
Probab=46.74 E-value=1.6e+02 Score=24.09 Aligned_cols=20 Identities=35% Similarity=0.509 Sum_probs=9.2
Q ss_pred HHHHHHhhhhHHHHHHHHHH
Q psy4946 75 ELVSQLESKNREIMREIARL 94 (165)
Q Consensus 75 ~lIa~LE~eNR~l~~EieRL 94 (165)
.+-.++|.+...-..|++++
T Consensus 64 ~~r~~~E~E~~~~~~el~~~ 83 (201)
T PF12072_consen 64 KLRQELERELKERRKELQRL 83 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 121
>PRK14127 cell division protein GpsB; Provisional
Probab=46.55 E-value=1.1e+02 Score=23.62 Aligned_cols=50 Identities=20% Similarity=0.347 Sum_probs=24.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhccc-------CCCCCCChhHHHHHHHHHHhHhHHHHHHH
Q psy4946 77 VSQLESKNREIMREIARLRRQQELEGVC-------ASGFEDNPALMSELRALRMRKDELESHLA 133 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e~~~~~-------~~~~~~~~eLlaEarlLRQhK~rLE~RM~ 133 (165)
|..|.++|+.+..+++.++.+-...... ++.+..|=+++ +|-++||....
T Consensus 46 ~~~Lk~e~~~l~~~l~e~~~~~~~~~~~~~~~~~~~~~~~tn~DiL-------KRls~LEk~VF 102 (109)
T PRK14127 46 IEELQQENARLKAQVDELTKQVSVGASSSSVATTQPSSSATNYDIL-------KRLSNLEKHVF 102 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccccccccCCCCCcchHHHH-------HHHHHHHHHHh
Confidence 4455555555555555555433211101 11233555666 67788887664
No 122
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=46.35 E-value=2.8e+02 Score=27.28 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=16.7
Q ss_pred HHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946 117 ELRALRMRKDELESHLASLQDSRRHLMVQLEGLM 150 (165)
Q Consensus 117 EarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr 150 (165)
++.-++..+.+|+..+..++....++..+++.+.
T Consensus 890 ~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~l~ 923 (1164)
T TIGR02169 890 ERDELEAQLRELERKIEELEAQIEKKRKRLSELK 923 (1164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444455555555555555555555544443
No 123
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=46.32 E-value=40 Score=27.68 Aligned_cols=39 Identities=23% Similarity=0.415 Sum_probs=27.4
Q ss_pred HHHHHHHhHhHHHHHHHHHHH----------------hHHHH---HHHHHHHHHHHhh
Q psy4946 117 ELRALRMRKDELESHLASLQD----------------SRRHL---MVQLEGLMRLLKT 155 (165)
Q Consensus 117 EarlLRQhK~rLE~RM~iLed----------------hnRQL---e~QLerLr~LL~~ 155 (165)
=+.+|..|+.+|++|+..|++ |||++ +.+|+.|-+.++.
T Consensus 86 R~~lLe~~~~~l~~ri~eLe~~l~~kad~vvsYqll~hr~e~ee~~~~l~~le~~~~~ 143 (175)
T PRK13182 86 DFEQLEAQLNTITRRLDELERQLQQKADDVVSYQLLQHRREMEEMLERLQKLEARLKK 143 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 345778888888888888775 56654 4567777777764
No 124
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=46.18 E-value=92 Score=24.55 Aligned_cols=43 Identities=26% Similarity=0.396 Sum_probs=35.8
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 113 ALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 113 eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
.+-+.++-|=++...+|..+..|+-.+.+|+.+|+.+..-|..
T Consensus 18 ~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~ 60 (143)
T PF12718_consen 18 ELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKE 60 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567778888889999999999999999999998888777663
No 125
>PRK03918 chromosome segregation protein; Provisional
Probab=45.76 E-value=2.9e+02 Score=26.77 Aligned_cols=76 Identities=22% Similarity=0.395 Sum_probs=34.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHH----HhhhcccCC-CCCCChhHHHHH-HHHHHhHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy4946 76 LVSQLESKNREIMREIARLRRQ----QELEGVCAS-GFEDNPALMSEL-RALRMRKDELESHLASLQDSRRHLMVQLEGL 149 (165)
Q Consensus 76 lIa~LE~eNR~l~~EieRLr~q----~e~~~~~~~-~~~~~~eLlaEa-rlLRQhK~rLE~RM~iLedhnRQLe~QLerL 149 (165)
-|..|..+-..+..++..|+.. ....+.||. +.+=+++--.|+ .-+++...+|+.+...|..-.+.|+..+..+
T Consensus 406 ~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~c~~~L~~~~~~el~~~~~~ei~~l~~~~~~l~~~~~~l~~~~~~~ 485 (880)
T PRK03918 406 EISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERKLRKELREL 485 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555543 112244654 222222222222 2344555556666665555555555444444
Q ss_pred HH
Q psy4946 150 MR 151 (165)
Q Consensus 150 r~ 151 (165)
.+
T Consensus 486 ~~ 487 (880)
T PRK03918 486 EK 487 (880)
T ss_pred HH
Confidence 33
No 126
>KOG0288|consensus
Probab=45.46 E-value=1.2e+02 Score=28.94 Aligned_cols=72 Identities=21% Similarity=0.300 Sum_probs=44.4
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCCh--hHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHH
Q psy4946 73 QRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNP--ALMSELRALRMRKDELESHLASLQDSRRHLMVQ 145 (165)
Q Consensus 73 ~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~--eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~Q 145 (165)
.+-.|++|.+||+.|..|.-+.+..-+.-- -.-.-.+|. -++.|++-||.+|-+.+.-|-+|++-+|+---+
T Consensus 53 ~E~~l~~Lq~e~~~l~e~~v~~~a~~~~~t-~~~~~~en~~~r~~~eir~~~~q~~e~~n~~~~l~~~~~~~r~~ 126 (459)
T KOG0288|consen 53 KELELNRLQEENTQLNEERVREEATEKTLT-VDVLIAENLRIRSLNEIRELREQKAEFENAELALREMRRKMRIA 126 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhHHHHHHHHHHH
Confidence 344666677776666666554332110000 000001222 478899999999999999999999999875544
No 127
>KOG0977|consensus
Probab=45.16 E-value=1.3e+02 Score=29.26 Aligned_cols=43 Identities=26% Similarity=0.345 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 113 ALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 113 eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
.+-||...+.-++.-||....-|-..|-.|..+|+++++.|++
T Consensus 152 ~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~ 194 (546)
T KOG0977|consen 152 ELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD 194 (546)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 5778999999999999999999999999999999999988764
No 128
>KOG0804|consensus
Probab=45.15 E-value=1.3e+02 Score=29.06 Aligned_cols=70 Identities=26% Similarity=0.318 Sum_probs=41.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHH----HHHHHhHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHL----ASLQDSRRHLMVQLE 147 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM----~iLedhnRQLe~QLe 147 (165)
-.+..+.+|..+-...+.|..-+|. .|.-|....-+.+++-.++|++- ..+++.-..|+.||.
T Consensus 379 ~~e~k~~q~q~k~~k~~kel~~~~E-------------~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlr 445 (493)
T KOG0804|consen 379 IVERKLQQLQTKLKKCQKELKEERE-------------ENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLR 445 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4466777888887777777776663 23346666666666655555543 234444445555555
Q ss_pred HHHHHHh
Q psy4946 148 GLMRLLK 154 (165)
Q Consensus 148 rLr~LL~ 154 (165)
.||-.|+
T Consensus 446 Dlmf~le 452 (493)
T KOG0804|consen 446 DLMFFLE 452 (493)
T ss_pred hHheehh
Confidence 5554444
No 129
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=44.46 E-value=38 Score=22.74 Aligned_cols=25 Identities=16% Similarity=0.345 Sum_probs=11.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHH
Q psy4946 73 QRELVSQLESKNREIMREIARLRRQ 97 (165)
Q Consensus 73 ~~~lIa~LE~eNR~l~~EieRLr~q 97 (165)
.+.-|++|+.++..+..|.+.|+.+
T Consensus 22 ~~~ei~~l~~~i~~l~~e~~~L~~e 46 (80)
T PF04977_consen 22 LNQEIAELQKEIEELKKENEELKEE 46 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444443
No 130
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=44.16 E-value=3.1e+02 Score=27.31 Aligned_cols=44 Identities=23% Similarity=0.457 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Q psy4946 113 ALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTH 156 (165)
Q Consensus 113 eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~ 156 (165)
++-.+.+-|+++-.+|..|+....|.-+.|+..++.+++++...
T Consensus 583 ~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~ 626 (717)
T PF10168_consen 583 ELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQ 626 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46677788888889999999999999999999999999998654
No 131
>KOG4797|consensus
Probab=43.99 E-value=1.2e+02 Score=24.12 Aligned_cols=39 Identities=28% Similarity=0.315 Sum_probs=28.4
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHh
Q psy4946 116 SELRALRMRKDELESHLASLQDSRRHLMV-----QLEGLMRLLK 154 (165)
Q Consensus 116 aEarlLRQhK~rLE~RM~iLedhnRQLe~-----QLerLr~LL~ 154 (165)
.|...||..-.+||.|-+.||..|+=|.. ||..|-.-|.
T Consensus 67 EEVe~Lk~qI~eL~er~~~Le~EN~lLk~~~spe~L~ql~~~~~ 110 (123)
T KOG4797|consen 67 EEVEVLKEQIRELEERNSALERENSLLKTLASPEQLAQLPAQLS 110 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHhcc
Confidence 56678888888999999999998887764 4555444443
No 132
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms. The different members of the Homo sapiens gene family are HOOK1, HOOK2 and HOOK3. Different domains have been identified in the three Homo sapiens HOOK proteins, and it was demonstrated that the highly conserved NH2-domain mediates attachment to microtubules, whereas the central coiled-coil motif mediates homodimerisation and the more divergent C-terminal domains are involved in binding to specific organelles (organelle-binding domains). It has been demonstrated that endogenous HOOK3 binds to Golgi membranes [], whereas both HOOK1 and HOOK2 are localised to discrete but unidentified cellular structures. In mice the Hook1 gene is predominantly expressed in the testis. Hook1 function is necessary for the correct positioning of microtubular structures within the haploid germ cell. Disruption of Hook1 function in mice causes abnormal sperm head shape and fragile attachment of the flagellum to the sperm head [].; GO: 0008017 microtubule binding, 0000226 microtubule cytoskeleton organization, 0005737 cytoplasm; PDB: 1WIX_A.
Probab=43.08 E-value=8 Score=37.34 Aligned_cols=74 Identities=24% Similarity=0.294 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
+.+.-|.+||.||..|...++.+..+. -..|-.++--....|.+||.......+....|..|++.|.+
T Consensus 456 ~l~erl~rLe~ENk~Lk~~~e~~~~e~------------~~~L~~~Leda~~~~~~Le~~~~~~~~~~~~lq~qle~lq~ 523 (713)
T PF05622_consen 456 ELRERLLRLEHENKRLKEKQEESEEEK------------LEELQSQLEDANRRKEKLEEENREANEKILELQSQLEELQK 523 (713)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhccchhhH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556678888877655444332111 11222333333367778888877777777777778887777
Q ss_pred HHhhcC
Q psy4946 152 LLKTHQ 157 (165)
Q Consensus 152 LL~~~~ 157 (165)
-|..++
T Consensus 524 ~l~~~~ 529 (713)
T PF05622_consen 524 SLQEQG 529 (713)
T ss_dssp ------
T ss_pred HHHHHh
Confidence 665443
No 133
>PF13874 Nup54: Nucleoporin complex subunit 54; PDB: 3T97_B.
Probab=43.03 E-value=1.2e+02 Score=23.55 Aligned_cols=73 Identities=27% Similarity=0.367 Sum_probs=27.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHH--------------HHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHL--------------ASLQD 137 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM--------------~iLed 137 (165)
.+++.|+.....-.+|...+..| ..|.. +..+-+.-+|++-..|-.|. ..|..
T Consensus 41 ~Q~~~~~~~~~~l~~i~~~l~~L-~~~~~------------~~~~rl~~~r~r~~~L~hR~l~v~~~~eilr~~g~~l~~ 107 (141)
T PF13874_consen 41 AQEEEIAQHRERLKEINDKLEEL-QKHDL------------ETSARLEEARRRHQELSHRLLRVLRKQEILRNRGYALSP 107 (141)
T ss_dssp -----HHHHHHHHHHHHHHHHHH-HHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHhHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCH
Confidence 56778888888888999999999 44432 23333444445555554443 45666
Q ss_pred hHHHHHHHHHHHHHHHhhcC
Q psy4946 138 SRRHLMVQLEGLMRLLKTHQ 157 (165)
Q Consensus 138 hnRQLe~QLerLr~LL~~~~ 157 (165)
...+|..+|+.|-..|..|.
T Consensus 108 eEe~L~~~le~l~~~l~~p~ 127 (141)
T PF13874_consen 108 EEEELRKRLEALEAQLNAPA 127 (141)
T ss_dssp --------------------
T ss_pred HHHHHHHHHHHHHHHHcCch
Confidence 67788889999988888774
No 134
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=43.01 E-value=92 Score=23.21 Aligned_cols=37 Identities=32% Similarity=0.426 Sum_probs=30.6
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 115 MSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 115 laEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
.+|...+=..-+.|..-+-.||+.|-.|.++|..|.+
T Consensus 25 ~~E~~~ins~LD~Lns~LD~LE~rnD~l~~~L~~LLe 61 (83)
T PF03670_consen 25 EEEYAAINSMLDQLNSCLDHLEQRNDHLHAQLQELLE 61 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4555566678899999999999999999999988743
No 135
>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation. These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.
Probab=42.94 E-value=46 Score=23.46 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=14.6
Q ss_pred HHHHHHHhHhHHHHHHHHHHHhHH
Q psy4946 117 ELRALRMRKDELESHLASLQDSRR 140 (165)
Q Consensus 117 EarlLRQhK~rLE~RM~iLedhnR 140 (165)
|.-.||.+-.+|+.|++.||.-|.
T Consensus 15 EVevLK~~I~eL~~~n~~Le~EN~ 38 (59)
T PF01166_consen 15 EVEVLKEQIAELEERNSQLEEENN 38 (59)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555677766666666655555443
No 136
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=42.91 E-value=1.2e+02 Score=22.51 Aligned_cols=62 Identities=21% Similarity=0.276 Sum_probs=28.9
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHH
Q psy4946 77 VSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRH 141 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQ 141 (165)
|-.||++-.....-+++...+--...-+ +..-..|-.|...|.-+-...|.+++.|-.+||-
T Consensus 7 Id~lEekl~~cr~~le~ve~rL~~~eLs---~e~R~~lE~E~~~l~~~l~~~E~eL~~LrkENrK 68 (85)
T PF15188_consen 7 IDGLEEKLAQCRRRLEAVESRLRRRELS---PEARRSLEKELNELKEKLENNEKELKLLRKENRK 68 (85)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHcccCCC---hHHHHHHHHHHHHHHHHhhccHHHHHHHHHhhhh
Confidence 4456666555555555444332111100 0011234455555555555556666665555554
No 137
>KOG3584|consensus
Probab=42.84 E-value=61 Score=29.66 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4946 128 LESHLASLQDSRRHLMVQLEGLMRLL 153 (165)
Q Consensus 128 LE~RM~iLedhnRQLe~QLerLr~LL 153 (165)
||-|...||..||-|-..|.-|+.|-
T Consensus 317 LENRVAVLENQNKaLIEELKtLKeLY 342 (348)
T KOG3584|consen 317 LENRVAVLENQNKALIEELKTLKELY 342 (348)
T ss_pred HHhHHHHHhcccHHHHHHHHHHHHHh
Confidence 78888899999988888888877764
No 138
>PF11221 Med21: Subunit 21 of Mediator complex; InterPro: IPR021384 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med21 has been known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in Drosophila. The heterodimer of the two subunits Med7 and Med21 appears to act as a hinge between the middle and the tail regions of Mediator []. ; PDB: 1YKE_B 1YKH_B.
Probab=42.69 E-value=97 Score=24.22 Aligned_cols=28 Identities=21% Similarity=0.321 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~ 98 (165)
.++...|+.|++||++.-+|++..-.+-
T Consensus 100 e~Q~~~i~~L~~E~~~~~~el~~~v~e~ 127 (144)
T PF11221_consen 100 EEQLKRIKELEEENEEAEEELQEAVKEA 127 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677899999999998888777555443
No 139
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=42.62 E-value=2.6e+02 Score=25.25 Aligned_cols=77 Identities=19% Similarity=0.356 Sum_probs=58.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
+++..|-++-++-.++..++.-++.+....+ ..-.++++.++-||..+++|=.+.+-|-+-|.++-.-|+.|++
T Consensus 17 ~lk~~~~e~~ekR~El~~~~~~~~ekRdeln------~kvrE~~e~~~elr~~rdeineev~elK~kR~ein~kl~eL~~ 90 (294)
T COG1340 17 QLKEEIEELKEKRDELRKEASELAEKRDELN------AKVRELREKAQELREERDEINEEVQELKEKRDEINAKLQELRK 90 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666677777777776665322 1334899999999999999999999999999988888888777
Q ss_pred HHh
Q psy4946 152 LLK 154 (165)
Q Consensus 152 LL~ 154 (165)
-..
T Consensus 91 ~~~ 93 (294)
T COG1340 91 EYR 93 (294)
T ss_pred HHH
Confidence 654
No 140
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=42.22 E-value=1.9e+02 Score=23.49 Aligned_cols=59 Identities=24% Similarity=0.398 Sum_probs=36.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 75 ELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 75 ~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
+++..|-+.+.+|..-++.|..++. +.++...|.+....|.+.-+++..+|...++.|.
T Consensus 2 ~~~~~L~~~d~~L~~~L~~l~~hq~---------------------~~~~I~~L~~e~~~ld~~i~~~~~~L~~~~~~L~ 60 (188)
T PF10018_consen 2 ELAEDLIEADDELSSALEELQEHQE---------------------NQARIQQLRAEIEELDEQIRDILKQLKEARKELR 60 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888888888876553 2233344444444444555666666666666554
No 141
>PF12329 TMF_DNA_bd: TATA element modulatory factor 1 DNA binding; InterPro: IPR022092 This is the middle region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes that contains at its N-terminal section a number of leucine zippers that could potentially form coiled coil structures. The whole proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant [] cells.
Probab=42.13 E-value=1.2e+02 Score=21.41 Aligned_cols=68 Identities=24% Similarity=0.364 Sum_probs=51.4
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 75 ELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 75 ~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
..|+.=.+....|+.|.+.|-.+.- .+-.-++-||..-.++|..+..|......++..++.|...|+
T Consensus 5 ~~l~EKDe~Ia~L~eEGekLSk~el-------------~~~~~IKKLr~~~~e~e~~~~~l~~~~~~~e~~~~~l~~~l~ 71 (74)
T PF12329_consen 5 KKLAEKDEQIAQLMEEGEKLSKKEL-------------KLNNTIKKLRAKIKELEKQIKELKKKLEELEKELESLEERLK 71 (74)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHH-------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444555567788888876553 233457789999999999999999999999999999988876
Q ss_pred h
Q psy4946 155 T 155 (165)
Q Consensus 155 ~ 155 (165)
.
T Consensus 72 ~ 72 (74)
T PF12329_consen 72 R 72 (74)
T ss_pred c
Confidence 4
No 142
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=42.10 E-value=27 Score=25.59 Aligned_cols=21 Identities=24% Similarity=0.537 Sum_probs=15.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHH
Q psy4946 76 LVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 76 lIa~LE~eNR~l~~EieRLr~ 96 (165)
||..|-+||..|..||++|+.
T Consensus 1 li~ei~eEn~~Lk~eiqkle~ 21 (76)
T PF07334_consen 1 LIHEIQEENARLKEEIQKLEA 21 (76)
T ss_pred ChHHHHHHHHHHHHHHHHHHH
Confidence 466777888888888886654
No 143
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=42.03 E-value=1.6e+02 Score=22.84 Aligned_cols=85 Identities=19% Similarity=0.280 Sum_probs=52.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcc--cC--CCCCCChhHHHHHHHHHHhHhHHHHHHHHH-------HHhHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGV--CA--SGFEDNPALMSELRALRMRKDELESHLASL-------QDSRR 140 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~--~~--~~~~~~~eLlaEarlLRQhK~rLE~RM~iL-------edhnR 140 (165)
.+..-|.++|.|...++.||.+|..+.+.... .. .....-.....++..|+..-.+|+.|-..+ .+...
T Consensus 20 ~L~s~lr~~E~E~~~l~~el~~l~~~r~~l~~Eiv~l~~~~e~~~~~~~~~~~L~~el~~l~~ry~t~LellGEK~E~ve 99 (120)
T PF12325_consen 20 RLQSQLRRLEGELASLQEELARLEAERDELREEIVKLMEENEELRALKKEVEELEQELEELQQRYQTLLELLGEKSEEVE 99 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 44567778888888888888888776542210 00 000011234556666677777777776655 35677
Q ss_pred HHHHHHHHHHHHHhhc
Q psy4946 141 HLMVQLEGLMRLLKTH 156 (165)
Q Consensus 141 QLe~QLerLr~LL~~~ 156 (165)
+|..-++.|+.+.+.+
T Consensus 100 EL~~Dv~DlK~myr~Q 115 (120)
T PF12325_consen 100 ELRADVQDLKEMYREQ 115 (120)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7777888888877654
No 144
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=41.81 E-value=94 Score=21.39 Aligned_cols=33 Identities=24% Similarity=0.369 Sum_probs=23.5
Q ss_pred HHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy4946 117 ELRALRMRKDELESHLASLQDSRRHLMVQLEGL 149 (165)
Q Consensus 117 EarlLRQhK~rLE~RM~iLedhnRQLe~QLerL 149 (165)
..+.++.....++++...++..|.+|..+...|
T Consensus 25 ~~~~~~~~~~~~~~~~~~l~~en~~L~~ei~~l 57 (85)
T TIGR02209 25 QTRQLNNELQKLQLEIDKLQKEWRDLQLEVAEL 57 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777778888888887776554
No 145
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=41.20 E-value=1.7e+02 Score=30.48 Aligned_cols=46 Identities=9% Similarity=0.088 Sum_probs=39.9
Q ss_pred CChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 110 DNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 110 ~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
.-+.+-.|.+-|+.....|-..-..+....++|+.|+..|..-|+.
T Consensus 1048 ~~~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e 1093 (1311)
T TIGR00606 1048 QVLQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093 (1311)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 3467889999999999999999999999999999999999988864
No 146
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=40.49 E-value=1.6e+02 Score=27.88 Aligned_cols=26 Identities=19% Similarity=0.486 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQ 97 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q 97 (165)
.....|.++++.|..+..||++|+..
T Consensus 314 ~l~~~l~~~~e~~~~l~~Ei~~l~~s 339 (569)
T PRK04778 314 TLPDFLEHAKEQNKELKEEIDRVKQS 339 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45668889999999999999999986
No 147
>TIGR02449 conserved hypothetical protein TIGR02449. Members of this family are small proteins, typically 73 amino acids in length, with single copies in each of several Proteobacteria, including Xylella fastidiosa, Pseudomonas aeruginosa, and Xanthomonas campestris. The function is unknown.
Probab=40.47 E-value=1.3e+02 Score=21.30 Aligned_cols=57 Identities=18% Similarity=0.330 Sum_probs=30.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 78 SQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 78 a~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
..||.+--.|..-|++|+.+.. +||+.-..+.+.=.-|-+.|..--..++.+..-|+
T Consensus 3 ~~Le~kle~Li~~~~~L~~EN~--------------------~Lr~q~~~~~~ER~~L~ekne~Ar~rvEamI~RLk 59 (65)
T TIGR02449 3 QALAAQVEHLLEYLERLKSENR--------------------LLRAQEKTWREERAQLLEKNEQARQKVEAMITRLK 59 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4667777777777777776542 45554444444444444444444444444444443
No 148
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=40.42 E-value=50 Score=28.71 Aligned_cols=16 Identities=25% Similarity=0.152 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhhcC
Q psy4946 142 LMVQLEGLMRLLKTHQ 157 (165)
Q Consensus 142 Le~QLerLr~LL~~~~ 157 (165)
|+.+.++|++||+-..
T Consensus 96 l~~EN~rLr~LL~~~~ 111 (283)
T TIGR00219 96 LKQENVRLRELLNSPL 111 (283)
T ss_pred HHHHHHHHHHHhcCcc
Confidence 7777888888888543
No 149
>TIGR00219 mreC rod shape-determining protein MreC. MreC (murein formation C) is involved in the rod shape determination in E. coli, and more generally in cell shape determination of bacteria whether or not they are rod-shaped. Cells defective in MreC are round. Species with MreC include many of the Proteobacteria, Gram-positives, and spirochetes.
Probab=40.11 E-value=84 Score=27.33 Aligned_cols=19 Identities=21% Similarity=0.385 Sum_probs=13.6
Q ss_pred HHHhhhhHHHHHHHHHHHH
Q psy4946 78 SQLESKNREIMREIARLRR 96 (165)
Q Consensus 78 a~LE~eNR~l~~EieRLr~ 96 (165)
.+|.+||..|.+|+..|+.
T Consensus 69 ~~l~~EN~~Lr~e~~~l~~ 87 (283)
T TIGR00219 69 NNLEYENYKLRQELLKKNQ 87 (283)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4677888887777777743
No 150
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=40.01 E-value=2.2e+02 Score=23.74 Aligned_cols=44 Identities=27% Similarity=0.404 Sum_probs=27.0
Q ss_pred hHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHH
Q psy4946 84 NREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQD 137 (165)
Q Consensus 84 NR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLed 137 (165)
-++|..||.+|..+-+ .-..+...++.||.+-+.|+.+.-..++
T Consensus 122 ~~eL~~eI~~L~~~i~----------~le~~~~~~k~LrnKa~~L~~eL~~F~~ 165 (171)
T PF04799_consen 122 KNELEDEIKQLEKEIQ----------RLEEIQSKSKTLRNKANWLESELERFQE 165 (171)
T ss_dssp HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555443 1224557789999888888877655543
No 151
>PF07058 Myosin_HC-like: Myosin II heavy chain-like; InterPro: IPR009768 This family represents a conserved region within a number of myosin II heavy chain-like proteins that seem to be specific to Arabidopsis thaliana.
Probab=39.99 E-value=78 Score=29.13 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=30.6
Q ss_pred hhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHh
Q psy4946 82 SKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDS 138 (165)
Q Consensus 82 ~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedh 138 (165)
+|-|.||.||+|||.+-.... -.--+|+ |-|+.|--|...|||.
T Consensus 115 EERR~lQgEmQ~LrDKLAiaE---------RtAkaEa----QLkeK~klRLK~LEe~ 158 (351)
T PF07058_consen 115 EERRFLQGEMQQLRDKLAIAE---------RTAKAEA----QLKEKLKLRLKVLEEG 158 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---------HHHHHHH----HHHHHHHHHHHHHHhh
Confidence 457899999999999864322 1112344 6688888888888764
No 152
>TIGR02209 ftsL_broad cell division protein FtsL. This model represents FtsL, both forms similar to that in E. coli and similar to that in B. subtilis. FtsL is one of the later proteins active in cell division septum formation. FtsL is small, low in complexity, and highly divergent. The scope of this model is broader than that of the Pfam model pfam04999.3 for FtsL, as this one includes FtsL from Bacillus subtilis and related species.
Probab=39.75 E-value=49 Score=22.83 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=13.5
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~ 96 (165)
+.=|.+++++|..|+.|+..|..
T Consensus 37 ~~~~~~l~~en~~L~~ei~~l~~ 59 (85)
T TIGR02209 37 QLEIDKLQKEWRDLQLEVAELSR 59 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcC
Confidence 44455566666666666666554
No 153
>PRK11020 hypothetical protein; Provisional
Probab=38.91 E-value=47 Score=26.33 Aligned_cols=26 Identities=35% Similarity=0.437 Sum_probs=23.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~e 99 (165)
..+|++++.|-..+-+||.+||.++.
T Consensus 30 ~~~i~qf~~E~~~l~k~I~~lk~~~~ 55 (118)
T PRK11020 30 AEKYAQFEKEKATLEAEIARLKEVQS 55 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999999999875
No 154
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=38.30 E-value=2e+02 Score=24.65 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=20.4
Q ss_pred HHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 120 ALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 120 lLRQhK~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
-||=.-.++.-.+..+++..|+|=.+|.++.+
T Consensus 72 ~LrG~~E~~~~~l~~~~~rq~~~y~dld~r~~ 103 (263)
T PRK10803 72 SLRGQIQENQYQLNQVVERQKQIYLQIDSLSS 103 (263)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333444555677777777888888877654
No 155
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=37.90 E-value=1.7e+02 Score=24.25 Aligned_cols=28 Identities=21% Similarity=0.446 Sum_probs=16.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~ 98 (165)
+.++.-+++|..+|..|..|++.|..++
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L~~~~ 134 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKLRQRL 134 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666666666666665544
No 156
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=37.78 E-value=3.6e+02 Score=27.85 Aligned_cols=40 Identities=35% Similarity=0.444 Sum_probs=20.9
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4946 114 LMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLL 153 (165)
Q Consensus 114 LlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL 153 (165)
+-.++.-++..+..|+.++..++++..++..+.+.++..+
T Consensus 875 l~~~l~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~ 914 (1163)
T COG1196 875 LEDELKELEEEKEELEEELRELESELAELKEEIEKLRERL 914 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344445555555555555555555555555544444333
No 157
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=37.49 E-value=2.7e+02 Score=23.97 Aligned_cols=33 Identities=21% Similarity=0.288 Sum_probs=15.9
Q ss_pred HHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy4946 120 ALRMRKDELESHLASLQDSRRHLMVQLEGLMRL 152 (165)
Q Consensus 120 lLRQhK~rLE~RM~iLedhnRQLe~QLerLr~L 152 (165)
.+...+..++++...++....++..|++.+..-
T Consensus 141 ~~~~~~~~l~~~i~~~~~~i~~~~~~l~~~~~~ 173 (423)
T TIGR01843 141 TLRAQLELILAQIKQLEAELAGLQAQLQALRQQ 173 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444455555555555555555544444433
No 158
>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication. SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.
Probab=37.45 E-value=1.6e+02 Score=22.41 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=10.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Q psy4946 73 QRELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 73 ~~~lIa~LE~eNR~l~~EieRLr~ 96 (165)
++..|..|.+||..|.-|-+.||.
T Consensus 27 LK~~~~~l~EEN~~L~~EN~~Lr~ 50 (107)
T PF06156_consen 27 LKKQLQELLEENARLRIENEHLRE 50 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444444443
No 159
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=37.11 E-value=77 Score=28.62 Aligned_cols=75 Identities=20% Similarity=0.280 Sum_probs=23.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4946 77 VSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLL 153 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL 153 (165)
+.+|.....+|..||+-++..+.... ..-.. ....+-....-|..|-+++|.|++.|+|.-.++..-++.+.+-+
T Consensus 100 l~el~~~~~elkkEie~IKk~q~e~~-~~i~~-~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i 174 (370)
T PF02994_consen 100 LNELKKRIKELKKEIENIKKNQSEMK-LEIEN-LKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRI 174 (370)
T ss_dssp ------------------H---------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHH-HHHHH-HHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 33455566678888888886442110 00000 00000001124668888888888888888777776665555443
No 160
>PF11802 CENP-K: Centromere-associated protein K; InterPro: IPR020993 Cenp-K is one of seven new Cenp-A-nucleosome distal (CAD) centromere components (the others being Cenp-L, Cenp-O, Cenp-P, Cenp-Q, Cenp-R and Cenp-S) that are identified as assembling on the Cenp-A nucleosome associated complex, NAC []. The Cenp-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival despite continued centromere-derived mitotic checkpoint signalling. Cenp-K is centromere-associated through its interaction with one or more components of the Cenp-A NAC.; GO: 0005634 nucleus
Probab=36.99 E-value=3.1e+02 Score=24.50 Aligned_cols=80 Identities=21% Similarity=0.265 Sum_probs=54.7
Q ss_pred cchHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHH--HHHHhHhHHHHHHHHHHHhHHHHHHH
Q psy4946 68 DTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELR--ALRMRKDELESHLASLQDSRRHLMVQ 145 (165)
Q Consensus 68 d~~~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEar--lLRQhK~rLE~RM~iLedhnRQLe~Q 145 (165)
+++.++--+|+++ +-|.+||..|...... --+.|++++-.+- -|-.-+..||.=.+..+..|..|...
T Consensus 49 ~s~~ql~ll~~~~----k~L~aE~~qwqk~~pe------ii~~n~~VL~~lgkeelqkl~~eLe~vLs~~q~KnekLke~ 118 (268)
T PF11802_consen 49 DSDAQLSLLMMRV----KCLTAELEQWQKRTPE------IIPLNPEVLLTLGKEELQKLISELEMVLSTVQSKNEKLKED 118 (268)
T ss_pred CcchhHHHHHHHH----HHHHHHHHHHHhcCCC------cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555566554 3499999988775431 1246677553221 12234567888899999999999999
Q ss_pred HHHHHHHHhhcC
Q psy4946 146 LEGLMRLLKTHQ 157 (165)
Q Consensus 146 LerLr~LL~~~~ 157 (165)
|+|-.+.|.+++
T Consensus 119 LerEq~wL~Eqq 130 (268)
T PF11802_consen 119 LEREQQWLDEQQ 130 (268)
T ss_pred HHHHHHHHHHHH
Confidence 999999998764
No 161
>KOG2751|consensus
Probab=36.92 E-value=3.2e+02 Score=26.18 Aligned_cols=67 Identities=24% Similarity=0.289 Sum_probs=39.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946 76 LVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLM 150 (165)
Q Consensus 76 lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr 150 (165)
.....+.++..-.+=+++|+.++. ...-++++.|++-|----.+|.+...-|+..+.+|--+|.++.
T Consensus 151 e~~~~~~e~~~Y~~~l~~Le~~~~--------~~~~~~~~~e~~~l~~eE~~L~q~lk~le~~~~~l~~~l~e~~ 217 (447)
T KOG2751|consen 151 EVEDAEDEVDTYKACLQRLEQQNQ--------DVSEEDLLKELKNLKEEEERLLQQLEELEKEEAELDHQLKELE 217 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCc--------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444555655553 2245667777776666666677777777777777766666554
No 162
>PHA03011 hypothetical protein; Provisional
Probab=36.84 E-value=70 Score=25.17 Aligned_cols=27 Identities=11% Similarity=0.238 Sum_probs=15.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRRQ 97 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~q 97 (165)
+..+.+|.+=-++-..|.+||.|||.+
T Consensus 88 k~~~~iIQdn~d~I~~LraeIDkLK~n 114 (120)
T PHA03011 88 KDLEIIIQDNDDEIHFLRAEIDKLKEN 114 (120)
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHH
Confidence 445555555555555566666666654
No 163
>PF07246 Phlebovirus_NSM: Phlebovirus nonstructural protein NS-M; InterPro: IPR009879 This entry consists of several Phlebovirus nonstructural NS-M proteins, which represent the N-terminal region of the M polyprotein precursor. The function of this family is unknown.
Probab=36.40 E-value=2e+02 Score=25.60 Aligned_cols=32 Identities=19% Similarity=0.295 Sum_probs=24.7
Q ss_pred HHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946 119 RALRMRKDELESHLASLQDSRRHLMVQLEGLM 150 (165)
Q Consensus 119 rlLRQhK~rLE~RM~iLedhnRQLe~QLerLr 150 (165)
+-++-+..++++|.+.|.++++.|+-.|..-.
T Consensus 198 ~~~~~~~~e~~~r~~~lr~~~~~l~~el~~aK 229 (264)
T PF07246_consen 198 EDEKILHEELEARESGLRNESKWLEHELSDAK 229 (264)
T ss_pred hhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHH
Confidence 33455566789999999999999998887643
No 164
>KOG1853|consensus
Probab=36.40 E-value=1.5e+02 Score=26.98 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=26.3
Q ss_pred cccch-HHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 66 SLDTS-RAQRELVSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 66 ~~d~~-~e~~~lIa~LE~eNR~l~~EieRLr~q~e 99 (165)
-+|+. .+.+.-..+|+.+|.-|.-|.+++|.+++
T Consensus 49 elesqL~q~etrnrdl~t~nqrl~~E~e~~Kek~e 83 (333)
T KOG1853|consen 49 ELESQLDQLETRNRDLETRNQRLTTEQERNKEKQE 83 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444 35677888999999999999999998664
No 165
>cd04770 HTH_HMRTR Helix-Turn-Helix DNA binding domain of Heavy Metal Resistance transcription regulators. Helix-turn-helix (HTH) heavy metal resistance transcription regulators (HMRTR): MerR1 (mercury), CueR (copper), CadR (cadmium), PbrR (lead), ZntR (zinc), and other related proteins. These transcription regulators mediate responses to heavy metal stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=36.08 E-value=1.4e+02 Score=22.00 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=11.4
Q ss_pred HHHHhHhHHHHHHHHHHHhHHH
Q psy4946 120 ALRMRKDELESHLASLQDSRRH 141 (165)
Q Consensus 120 lLRQhK~rLE~RM~iLedhnRQ 141 (165)
+|.+++..|++++..|+.-+..
T Consensus 83 ~l~~~~~~l~~~i~~l~~~~~~ 104 (123)
T cd04770 83 LLEEKLAEVEAKIAELQALRAE 104 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555554444333
No 166
>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins. Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.
Probab=35.81 E-value=96 Score=24.04 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhhcC
Q psy4946 127 ELESHLASLQDSRRHLMVQLEGLMRLLKTHQ 157 (165)
Q Consensus 127 rLE~RM~iLedhnRQLe~QLerLr~LL~~~~ 157 (165)
+|=-+.+.||+-|.-|..+++-|+-+|.+..
T Consensus 76 rlkkk~~~LeEENNlLklKievLLDMLtett 106 (108)
T cd07429 76 RLKKKNQQLEEENNLLKLKIEVLLDMLAETT 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334899999999999999999999997643
No 167
>PF15294 Leu_zip: Leucine zipper
Probab=35.56 E-value=3.3e+02 Score=24.38 Aligned_cols=76 Identities=22% Similarity=0.284 Sum_probs=46.3
Q ss_pred hhhHHHHHHHHHHHHHHhhhcccC----------C--CCCCChhHHHHHHHHHHhHhH-------HHHHHHHHHHhHHHH
Q psy4946 82 SKNREIMREIARLRRQQELEGVCA----------S--GFEDNPALMSELRALRMRKDE-------LESHLASLQDSRRHL 142 (165)
Q Consensus 82 ~eNR~l~~EieRLr~q~e~~~~~~----------~--~~~~~~eLlaEarlLRQhK~r-------LE~RM~iLedhnRQL 142 (165)
-|||+++.+|++...+.-.....+ | .+...+-|-.|..-|+.--.. ||.+--+.=+-+..|
T Consensus 86 lEn~eLLe~i~~~E~~~~~~~~~~~~~~~~~KL~pl~e~g~~~ll~kEi~rLq~EN~kLk~rl~~le~~at~~l~Ek~kl 165 (278)
T PF15294_consen 86 LENRELLEQIAEFEKQEFTSSFKPNQETSKPKLEPLNESGGSELLNKEIDRLQEENEKLKERLKSLEKQATSALDEKSKL 165 (278)
T ss_pred HHHHHHHHHHHHHHHhhhcccCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368999999999887654322210 1 111223355555555544444 444544555678899
Q ss_pred HHHHHHHHHHHhhcC
Q psy4946 143 MVQLEGLMRLLKTHQ 157 (165)
Q Consensus 143 e~QLerLr~LL~~~~ 157 (165)
..||..|+.......
T Consensus 166 ~~~L~~lq~~~~~~~ 180 (278)
T PF15294_consen 166 EAQLKELQDEQGDQK 180 (278)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999655443
No 168
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=35.42 E-value=4.7e+02 Score=27.42 Aligned_cols=72 Identities=24% Similarity=0.230 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLM 150 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr 150 (165)
.++..++...+..-.++..++.++..+.. .+-.+..-||+.+.+|.....-|+-.-.+.+.++..+.
T Consensus 301 eEL~~ll~~f~~~~~e~~~~~~~le~e~~-------------~l~~el~~l~~~~~~l~~e~gkl~~~~~~~~~~~~~~~ 367 (1311)
T TIGR00606 301 EQLNDLYHNHQRTVREKERELVDCQRELE-------------KLNKERRLLNQEKTELLVEQGRLQLQADRHQEHIRARD 367 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555554443 34456667777777777777777766666666666666
Q ss_pred HHHhh
Q psy4946 151 RLLKT 155 (165)
Q Consensus 151 ~LL~~ 155 (165)
.++..
T Consensus 368 ~~~~~ 372 (1311)
T TIGR00606 368 SLIQS 372 (1311)
T ss_pred HHHHH
Confidence 66654
No 169
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=35.05 E-value=3.2e+02 Score=24.22 Aligned_cols=72 Identities=25% Similarity=0.336 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLM 150 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr 150 (165)
.....-|.+++.+-..++.||+.|..+-+ ++...+.=++-.-+++++.|..|+..=.+|+..+...-
T Consensus 34 ~~~ds~l~~~~~~~~~~q~ei~~L~~qi~-------------~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~I~~r~ 100 (265)
T COG3883 34 QNQDSKLSELQKEKKNIQNEIESLDNQIE-------------EIQSKIDELQKEIDQSKAEIKKLQKEIAELKENIVERQ 100 (265)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677889999999999999999998765 56677777778888888888888888888887777766
Q ss_pred HHHhh
Q psy4946 151 RLLKT 155 (165)
Q Consensus 151 ~LL~~ 155 (165)
.+|+.
T Consensus 101 ~~l~~ 105 (265)
T COG3883 101 ELLKK 105 (265)
T ss_pred HHHHH
Confidence 66664
No 170
>KOG0992|consensus
Probab=35.02 E-value=2.5e+02 Score=27.63 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=26.2
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhcCCC
Q psy4946 130 SHLASLQDSRRHLMVQLEGLMRLLKTHQGT 159 (165)
Q Consensus 130 ~RM~iLedhnRQLe~QLerLr~LL~~~~~~ 159 (165)
+..+.+.+.+++|+.+++||+-++..-.++
T Consensus 231 qQlq~~~~ehkllee~~~rl~~~~s~VegS 260 (613)
T KOG0992|consen 231 QQLQALIREHKLLEEHLERLHLQLSDVEGS 260 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 469999999999999999999999876654
No 171
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=35.01 E-value=4.3e+02 Score=27.36 Aligned_cols=41 Identities=34% Similarity=0.463 Sum_probs=24.3
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 114 LMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 114 LlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
+..++.-++..+..|+..+.-+++...+|..+|..+..-+.
T Consensus 861 ~~~~l~~~~~~~~~l~~~l~~~~~~~~~l~~~l~~~~~~~~ 901 (1163)
T COG1196 861 LKEELEELEAEKEELEDELKELEEEKEELEEELRELESELA 901 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666666666666666666666665555443
No 172
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=35.00 E-value=4e+02 Score=25.30 Aligned_cols=8 Identities=38% Similarity=0.671 Sum_probs=2.9
Q ss_pred HHHHHHHH
Q psy4946 128 LESHLASL 135 (165)
Q Consensus 128 LE~RM~iL 135 (165)
|+.|...|
T Consensus 92 Lekr~e~L 99 (514)
T TIGR03319 92 LDRKMESL 99 (514)
T ss_pred HHHHHHHH
Confidence 33333333
No 173
>COG1842 PspA Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]
Probab=35.00 E-value=2.9e+02 Score=23.60 Aligned_cols=67 Identities=27% Similarity=0.275 Sum_probs=31.1
Q ss_pred HhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHH----HHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 80 LESKNREIMREIARLRRQQELEGVCASGFEDNPALMSE----LRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 80 LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaE----arlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
||-+-..++...++|..+-..+- ...|++|..| ..-|-.....+++.+..+.++-.+|..++..|..
T Consensus 57 ~e~~~~~~~~~~~k~e~~A~~Al-----~~g~E~LAr~al~~~~~le~~~~~~~~~~~~~~~~~~~l~~~~~~Le~ 127 (225)
T COG1842 57 LERKLEEAQARAEKLEEKAELAL-----QAGNEDLAREALEEKQSLEDLAKALEAELQQAEEQVEKLKKQLAALEQ 127 (225)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444433221 1234544443 3444455555555555555555555555444443
No 174
>PF12709 Kinetocho_Slk19: Central kinetochore-associated; InterPro: IPR024312 This is a family of proteins integrally involved in the central kinetochore. Slk19 is a yeast member and it may play an important role in the timing of nuclear migration. It may also participate, directly or indirectly, in the maintenance of centromeric tensile strength during mitotic stagnation, for instance during activation of checkpoint controls, when cells need to preserve nuclear integrity until cell cycle progression can be resumed [].
Probab=34.94 E-value=59 Score=24.40 Aligned_cols=26 Identities=27% Similarity=0.535 Sum_probs=22.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~e 99 (165)
+.=|.+|+.+|..+.+|+++|+.+-+
T Consensus 48 ek~v~~L~~e~~~l~~E~e~L~~~l~ 73 (87)
T PF12709_consen 48 EKKVDELENENKALKRENEQLKKKLD 73 (87)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678999999999999999998765
No 175
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=34.69 E-value=5.1e+02 Score=26.37 Aligned_cols=64 Identities=33% Similarity=0.359 Sum_probs=48.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLL 153 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL 153 (165)
.+++++|.---+.|+.|+.+-|.+-+ +|..-|+.--..||+..+--+++...+..||.-.++=+
T Consensus 488 dRl~aeLqlSa~liqqeV~~ArEqge----------------aE~~~Lse~aqqLE~~Lq~~qe~la~l~~QL~~Ar~~l 551 (739)
T PF07111_consen 488 DRLDAELQLSARLIQQEVGRAREQGE----------------AERQQLSEVAQQLEQELQEKQESLAELEEQLEAARKSL 551 (739)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 45899998888888999999888665 56666777777777777777777777777776655433
No 176
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=34.61 E-value=3.1e+02 Score=23.87 Aligned_cols=70 Identities=24% Similarity=0.304 Sum_probs=47.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRL 152 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~L 152 (165)
.+=+..||++-..++.+++.|..+.+. -.+.+.+.=+-+..-+.++|..+..+.+....+-+|-..|..=
T Consensus 102 k~r~~~le~el~~l~~~~~~l~~~i~~---------l~~~~~~~e~~~~e~~~~~e~e~~~i~e~~~~~~~~~~~L~~~ 171 (239)
T COG1579 102 KERINSLEDELAELMEEIEKLEKEIED---------LKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEK 171 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344667777878888888888776652 2334555555566667788888888888777777776666543
No 177
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=34.47 E-value=1.6e+02 Score=20.52 Aligned_cols=40 Identities=23% Similarity=0.327 Sum_probs=26.7
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 116 SELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 116 aEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
.|++-.+-----+|.+.+.-+..|++|+.++..|++-++.
T Consensus 18 eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee 57 (61)
T PF08826_consen 18 EELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEE 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444456777777788888888888888776654
No 178
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=34.34 E-value=65 Score=21.68 Aligned_cols=21 Identities=29% Similarity=0.412 Sum_probs=17.1
Q ss_pred HHHHHhHhHHHHHHHHHHHhH
Q psy4946 119 RALRMRKDELESHLASLQDSR 139 (165)
Q Consensus 119 rlLRQhK~rLE~RM~iLedhn 139 (165)
..|||.-.-||.++++||..=
T Consensus 2 ~aLrqQv~aL~~qv~~Lq~~f 22 (46)
T PF09006_consen 2 NALRQQVEALQGQVQRLQAAF 22 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999999888753
No 179
>CHL00154 rpl29 ribosomal protein L29; Validated
Probab=33.78 E-value=1.2e+02 Score=21.26 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 77 VSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e 99 (165)
+.+|+++-.++.+|+-.||-||.
T Consensus 14 ~~eL~~~l~elk~elf~LRfq~a 36 (67)
T CHL00154 14 DSEISEEIIKTKKELFDLRLKKA 36 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999999999999999885
No 180
>PF09766 FimP: Fms-interacting protein; InterPro: IPR019163 This entry represents Thoc5 which is one of the subunits of the THO complex, which additionally contains: HPR1, Thoc2, Thoc6 and Thoc7. The evolutionarily conserved multisubunit THO complex, which is recruited to actively transcribed genes is required for the efficient expression of genes that have internal tandem repeats. It is suggested that the THO complex functions to rectify aberrant structures that arise during transcription [, ] and is required for cell proliferation and for proper export of heat-shock mRNAs under heat stress []. This entry also identifies the crucial 144 N-terminal residues of the FmiP protein, which is essential for the binding of the protein to the cytoplasmic domain of activated Fms-molecules in M-CSF induced haematopoietic differentiation of macrophages. The C terminus contains a putative nuclear localisation sequence and a leucine zipper which suggest further, as yet unknown, nuclear functions. The level of FMIP expression might form a threshold that determines whether cells differentiate into macrophages or into granulocytes [].
Probab=33.72 E-value=2.5e+02 Score=25.19 Aligned_cols=16 Identities=13% Similarity=0.250 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhhhhHH
Q psy4946 71 RAQRELVSQLESKNRE 86 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~ 86 (165)
.+.+.||++|+-|..+
T Consensus 87 ~~H~lml~RL~~EL~~ 102 (355)
T PF09766_consen 87 DEHQLMLARLEFELEQ 102 (355)
T ss_pred ChHHHHHHHHHHHHHH
Confidence 3677789998888643
No 181
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=33.60 E-value=2.3e+02 Score=22.03 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=13.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 76 LVSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 76 lIa~LE~eNR~l~~EieRLr~q~e 99 (165)
++..|...-|-+-.|+.-|+++-.
T Consensus 17 ~ve~L~s~lr~~E~E~~~l~~el~ 40 (120)
T PF12325_consen 17 LVERLQSQLRRLEGELASLQEELA 40 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555555555555555443
No 182
>KOG0612|consensus
Probab=32.91 E-value=4.6e+02 Score=28.40 Aligned_cols=13 Identities=23% Similarity=0.240 Sum_probs=6.0
Q ss_pred CCCchhHHHHHHH
Q psy4946 34 RLDDEHKLIARYA 46 (165)
Q Consensus 34 ~~DeEH~LIarY~ 46 (165)
+.+.+-.-++..+
T Consensus 413 ~~~~~~~~~~~~~ 425 (1317)
T KOG0612|consen 413 PLKNEKEANAERS 425 (1317)
T ss_pred cccchhhcccccc
Confidence 4444444444443
No 183
>PRK11239 hypothetical protein; Provisional
Probab=32.88 E-value=1.3e+02 Score=26.10 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=25.7
Q ss_pred HHHHHHhhhhcccCCCCCCCCcccccchHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy4946 43 ARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 43 arY~~~L~~~~~~~~~~p~~~~~~~d~~~e~~~lIa~LE~eNR~l~~EieRLr~ 96 (165)
.||+.-|.|+... +..+. ....+....++.=++.||.|...|.+.+++|+.
T Consensus 161 ~Ry~hLl~g~v~~-~~~~~--~~~~~~~~~Le~rv~~Le~eva~L~~~l~~l~~ 211 (215)
T PRK11239 161 SRYMHLFSGEVDD-QPAVT--DMSNAVDGDLQARVEALEIEVAELKQRLDSLLA 211 (215)
T ss_pred HHHHHHhcCCccc-ccccc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888876321 11110 111222234555566666666666666666554
No 184
>PF09278 MerR-DNA-bind: MerR, DNA binding; InterPro: IPR015358 This entry represents a family of DNA-binding domains that are predominantly found in the prokaryotic transcriptional regulator MerR. They adopt a structure consisting of a core of three alpha helices, with an architecture that is similar to that of the 'winged helix' fold []. ; PDB: 3QAO_A 1R8D_B 1JBG_A 2VZ4_A 2ZHH_A 2ZHG_A 1Q09_A 1Q08_B 1Q0A_B 1Q07_A ....
Probab=32.40 E-value=1.4e+02 Score=19.32 Aligned_cols=25 Identities=32% Similarity=0.432 Sum_probs=18.9
Q ss_pred HHHHHhHhHHHHHHHHHHHhHHHHH
Q psy4946 119 RALRMRKDELESHLASLQDSRRHLM 143 (165)
Q Consensus 119 rlLRQhK~rLE~RM~iLedhnRQLe 143 (165)
.+|+.|..++++++..|+.-+++|.
T Consensus 39 ~~l~~~~~~i~~~i~~L~~~~~~L~ 63 (65)
T PF09278_consen 39 ALLEEKLEEIEEQIAELQALRAQLE 63 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4788888888888888876665553
No 185
>PRK13922 rod shape-determining protein MreC; Provisional
Probab=32.05 E-value=1.4e+02 Score=25.21 Aligned_cols=22 Identities=23% Similarity=0.415 Sum_probs=15.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHH
Q psy4946 77 VSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~ 98 (165)
+.+|.+||+.|.+|+.+|+.+.
T Consensus 71 ~~~l~~en~~L~~e~~~l~~~~ 92 (276)
T PRK13922 71 LFDLREENEELKKELLELESRL 92 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777777777777654
No 186
>KOG0241|consensus
Probab=32.02 E-value=2.1e+02 Score=30.74 Aligned_cols=68 Identities=21% Similarity=0.222 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHH-HHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4946 84 NREIMREIARLRRQQELEGVCASGFEDNPALMSE-LRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLL 153 (165)
Q Consensus 84 NR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaE-arlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL 153 (165)
||++..|++.||.+-+.+.+. +..+-.+-++| .|++.+-.--.|.|...+|.-|.++..||+-+---+
T Consensus 366 irElReEve~lr~qL~~ae~~--~~~el~e~l~esekli~ei~~twEEkl~ktE~in~erq~~L~~~gis~ 434 (1714)
T KOG0241|consen 366 IRELREEVEKLREQLEQAEAM--KLPELKEKLEESEKLIKEITVTWEEKLRKTEEINQERQAQLESMGISL 434 (1714)
T ss_pred HHHHHHHHHHHHHHHhhhhhc--cchHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888766543221 12233343444 355566667889999999999999999998764433
No 187
>PRK02224 chromosome segregation protein; Provisional
Probab=31.65 E-value=4.3e+02 Score=25.78 Aligned_cols=30 Identities=17% Similarity=0.295 Sum_probs=11.3
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHhHHHHHHH
Q psy4946 116 SELRALRMRKDELESHLASLQDSRRHLMVQ 145 (165)
Q Consensus 116 aEarlLRQhK~rLE~RM~iLedhnRQLe~Q 145 (165)
.++.-++..-+.++.+...++....+|..+
T Consensus 653 ~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~ 682 (880)
T PRK02224 653 EDKERAEEYLEQVEEKLDELREERDDLQAE 682 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333433333333333333333
No 188
>PRK02119 hypothetical protein; Provisional
Probab=30.55 E-value=2e+02 Score=20.37 Aligned_cols=24 Identities=25% Similarity=0.177 Sum_probs=14.6
Q ss_pred HHHHHHHhHhHHHHHHHHHHHhHH
Q psy4946 117 ELRALRMRKDELESHLASLQDSRR 140 (165)
Q Consensus 117 EarlLRQhK~rLE~RM~iLedhnR 140 (165)
|...+-+|-.+||.|+.-.++.-.
T Consensus 3 ~~~~~e~Ri~~LE~rla~QE~tie 26 (73)
T PRK02119 3 IQQNLENRIAELEMKIAFQENLLE 26 (73)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455677777777766655433
No 189
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=30.52 E-value=1.2e+02 Score=22.85 Aligned_cols=31 Identities=19% Similarity=0.222 Sum_probs=20.1
Q ss_pred HHHHHhHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy4946 119 RALRMRKDELESHLASLQDSRRHLMVQLEGL 149 (165)
Q Consensus 119 rlLRQhK~rLE~RM~iLedhnRQLe~QLerL 149 (165)
.+|.+|...|++++..|+.....|..-+...
T Consensus 83 ~~l~~~~~~l~~~~~~l~~~~~~L~~~~~~~ 113 (118)
T cd04776 83 EKIEKRRAELEQQRRDIDAALAELDAAEERC 113 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666777777777777776666666555443
No 190
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=30.47 E-value=2.7e+02 Score=21.89 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=13.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~ 98 (165)
.+-+.++++.+.++..++..++...
T Consensus 94 ~~el~~l~~~~~~~~~~l~~~~~~~ 118 (191)
T PF04156_consen 94 QEELDQLQERIQELESELEKLKEDL 118 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666666666665533
No 191
>PF02050 FliJ: Flagellar FliJ protein; InterPro: IPR012823 Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects []. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export. The sequences of fliH, fliI and the adjacent gene, fliJ, have been deduced. FliJ was shown to encode a protein of molecular mass 17,302 Da []. It is a membrane-associated protein that affects chemotactic events, mutations in FliJ result in failure to respond to chemotactic stimuli.; GO: 0003774 motor activity, 0001539 ciliary or flagellar motility, 0006935 chemotaxis, 0009288 bacterial-type flagellum, 0016020 membrane, 0044461 bacterial-type flagellum part; PDB: 3AJW_A.
Probab=30.47 E-value=1.8e+02 Score=19.96 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 113 ALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 113 eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
-=+.++...+...+.|+.++.-++..-..++.+++..+..|..
T Consensus 42 ~s~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~r~~l~~ 84 (123)
T PF02050_consen 42 VSVAQLRNYQRYISALEQAIQQQQQELERLEQEVEQAREELQE 84 (123)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777888999999999988888888888888888877653
No 192
>PF07200 Mod_r: Modifier of rudimentary (Mod(r)) protein; InterPro: IPR009851 This entry represents a conserved region approximately 150 residues long within a number of eukaryotic proteins that show homology with Drosophila melanogaster Modifier of rudimentary (Mod(r)) proteins. The N-terminal half of Mod(r) proteins is acidic, whereas the C-terminal half is basic [], and both of these regions are represented in this family.; PDB: 2CAZ_F 2P22_C 2F66_F.
Probab=30.33 E-value=2.5e+02 Score=21.43 Aligned_cols=64 Identities=25% Similarity=0.251 Sum_probs=42.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 77 VSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
+.+|.+.|=.++.+|+.+|.+-. ++..+++.|.+.=..+++++..+ -.+....+-+.+|.....
T Consensus 43 n~~lAe~nL~~~~~l~~~r~~l~-------------~~~~~~~~L~~~~~~k~~~~~~l-~~~~s~~~l~~~L~~~~~ 106 (150)
T PF07200_consen 43 NEELAEQNLSLEPELEELRSQLQ-------------ELYEELKELESEYQEKEQQQDEL-SSNYSPDALLARLQAAAS 106 (150)
T ss_dssp HHHHHHHH----HHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH-HHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH-HccCCHHHHHHHHHHHHH
Confidence 33455555556677777776543 57788888888888888888888 666666666666666554
No 193
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=30.29 E-value=4.1e+02 Score=24.07 Aligned_cols=31 Identities=16% Similarity=0.127 Sum_probs=14.6
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHhHHHHH
Q psy4946 113 ALMSELRALRMRKDELESHLASLQDSRRHLM 143 (165)
Q Consensus 113 eLlaEarlLRQhK~rLE~RM~iLedhnRQLe 143 (165)
.+.+.+..+.+....++.+...++.....|.
T Consensus 201 ~~~~~l~~l~~~l~~~~~~l~~~~a~~~~l~ 231 (498)
T TIGR03007 201 DYYSEISEAQEELEAARLELNEAIAQRDALK 231 (498)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555554444444333333
No 194
>KOG2264|consensus
Probab=30.24 E-value=2.4e+02 Score=28.52 Aligned_cols=55 Identities=27% Similarity=0.332 Sum_probs=35.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 77 VSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
+.+||.|-.+|+.||+.++.+.|.-. +++-|.|-+|++ |+-.-.|-+.|++.||+
T Consensus 95 L~ele~krqel~seI~~~n~kiEelk----------------~~i~~~q~eL~~----Lk~~ieqaq~~~~El~~ 149 (907)
T KOG2264|consen 95 LTELEVKRQELNSEIEEINTKIEELK----------------RLIPQKQLELSA----LKGEIEQAQRQLEELRE 149 (907)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH----------------HHHHHhHHHHHH----HHhHHHHHHHHHHHHHh
Confidence 56888898899999999998876211 123344444443 44444556667777765
No 195
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=30.18 E-value=4e+02 Score=23.82 Aligned_cols=37 Identities=24% Similarity=0.298 Sum_probs=16.3
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy4946 116 SELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRL 152 (165)
Q Consensus 116 aEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~L 152 (165)
+|--.|+..-.+||+....+++.-+.|++.+-+|-..
T Consensus 149 ~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~ 185 (290)
T COG4026 149 KEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEM 185 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444444444444333
No 196
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=30.09 E-value=2.1e+02 Score=20.82 Aligned_cols=37 Identities=24% Similarity=0.329 Sum_probs=32.3
Q ss_pred HHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 119 RALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 119 rlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
+.|..+++.|+.++..|++.-..+..++..|..-|.+
T Consensus 90 ~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~ 126 (129)
T cd00890 90 EFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQ 126 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677999999999999999999999999988887764
No 197
>KOG0288|consensus
Probab=29.47 E-value=3.5e+02 Score=25.95 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=27.7
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHH
Q psy4946 112 PALMSELRALRMRKDELESHLASLQDSRRHLMVQ 145 (165)
Q Consensus 112 ~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~Q 145 (165)
.-+.||.+.++-|-+..|.-.+-||+-|+||-..
T Consensus 37 ~~~~a~~~ai~a~~~~~E~~l~~Lq~e~~~l~e~ 70 (459)
T KOG0288|consen 37 VILRAESRAIKAKLQEKELELNRLQEENTQLNEE 70 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577888888888888888888888888887654
No 198
>KOG1510|consensus
Probab=29.35 E-value=1.9e+02 Score=23.56 Aligned_cols=27 Identities=22% Similarity=0.400 Sum_probs=21.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e 99 (165)
+++. |..|++||.+-..|.+.+-.+.+
T Consensus 89 Ql~~-i~kLq~en~e~~~el~~~v~~~e 115 (139)
T KOG1510|consen 89 QLEK-IKKLQEENEEVALELEELVSKGE 115 (139)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 5566 89999999998888887765543
No 199
>cd04782 HTH_BltR Helix-Turn-Helix DNA binding domain of the BltR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BltR (BmrR-like transporter) of Bacillus subtilis, and related proteins; N-terminal domain. Blt, like Bmr, is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. These regulators are comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the C-terminal domains are often unrelated and bind specific coactivator molecules. They share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=29.31 E-value=1.4e+02 Score=21.44 Aligned_cols=23 Identities=13% Similarity=0.348 Sum_probs=12.4
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 129 ESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 129 E~RM~iLedhnRQLe~QLerLr~ 151 (165)
+....+|+++..+|+.++++|.+
T Consensus 73 ~~~~~~l~~~~~~l~~~i~~l~~ 95 (97)
T cd04782 73 DELIELLKKQEKEIKEEIEELQK 95 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455555555555555555543
No 200
>PF11855 DUF3375: Protein of unknown function (DUF3375); InterPro: IPR021804 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.
Probab=28.82 E-value=2.2e+02 Score=26.58 Aligned_cols=29 Identities=31% Similarity=0.347 Sum_probs=24.2
Q ss_pred chHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy4946 69 TSRAQRELVSQLESKNREIMREIARLRRQ 97 (165)
Q Consensus 69 ~~~e~~~lIa~LE~eNR~l~~EieRLr~q 97 (165)
.+..-+.-|+.||.+-.+|++||++|+.-
T Consensus 138 ~~~Dp~~Ri~~Le~e~~~i~~EI~~l~aG 166 (478)
T PF11855_consen 138 TDPDPERRIAELEREIAEIDAEIDRLEAG 166 (478)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 33445678999999999999999999975
No 201
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=28.75 E-value=6.9e+02 Score=26.07 Aligned_cols=39 Identities=28% Similarity=0.363 Sum_probs=24.8
Q ss_pred HHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 117 ELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 117 EarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
+..-+|+..+..+..++.++....++..|+..|..+|..
T Consensus 498 ~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L~p 536 (1201)
T PF12128_consen 498 EEQELRKERDQAEEELRQARRELEELRAQIAELQRQLDP 536 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 334455555566666666666666677777777777763
No 202
>PF03194 LUC7: LUC7 N_terminus; InterPro: IPR004882 This family consists of several LUC7 protein homologues that are restricted to eukaryotes. LUC7 has been shown to be a U1 snRNA associated protein [] with a role in splice site recognition []. The entry contains human and mouse LUC7 like (LUC7L) proteins [] and human cisplatin resistance-associated overexpressed protein (CROP) [].
Probab=28.74 E-value=2e+02 Score=24.76 Aligned_cols=51 Identities=29% Similarity=0.532 Sum_probs=39.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHL 132 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM 132 (165)
.+-|..|+++...++++++.|-.+-.- .....+++++..|+..|.+||...
T Consensus 122 ~~~i~~l~~~I~~ll~~aE~LGeeG~V--------deA~~~~~~~e~Lk~ek~~le~~~ 172 (254)
T PF03194_consen 122 AEKIDELDEKIGELLKEAEELGEEGDV--------DEAQKLMEEVEKLKEEKEELEKEL 172 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCH--------HHHHHHHHHHHHHHHHHHHHHhhh
Confidence 667888888888888888887765431 123469999999999999999853
No 203
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=28.42 E-value=5.4e+02 Score=25.25 Aligned_cols=28 Identities=25% Similarity=0.353 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHhHH
Q psy4946 113 ALMSELRALRMRKDELESHLASLQDSRR 140 (165)
Q Consensus 113 eLlaEarlLRQhK~rLE~RM~iLedhnR 140 (165)
.|=+|++-||..++.|+.+.+..-..|.
T Consensus 84 ~Lq~E~~~L~kElE~L~~qlqaqv~~ne 111 (617)
T PF15070_consen 84 QLQAEAEHLRKELESLEEQLQAQVENNE 111 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677777777777766655443333
No 204
>PF09421 FRQ: Frequency clock protein; InterPro: IPR018554 The frequency clock protein, is the central component of the frq-based circadian negative feedback loop, regulates various aspects of the circadian clock in Neurospora crassa []. This protein has been shown to interact with itself via a coiled-coil [].
Probab=28.31 E-value=54 Score=33.96 Aligned_cols=29 Identities=17% Similarity=0.478 Sum_probs=25.6
Q ss_pred chHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy4946 69 TSRAQRELVSQLESKNREIMREIARLRRQ 97 (165)
Q Consensus 69 ~~~e~~~lIa~LE~eNR~l~~EieRLr~q 97 (165)
+..+.|-+|-+|==||+.|..|++|-|.-
T Consensus 129 s~ddyRSVIDDLTve~kkLK~eLkrykq~ 157 (989)
T PF09421_consen 129 SADDYRSVIDDLTVENKKLKEELKRYKQR 157 (989)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHhccC
Confidence 44588999999999999999999998863
No 205
>PF10883 DUF2681: Protein of unknown function (DUF2681); InterPro: IPR020274 This entry contains membrane proteins with no known function.
Probab=28.20 E-value=75 Score=23.71 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=9.6
Q ss_pred HHhhhhHHHHHHHHHHHHH
Q psy4946 79 QLESKNREIMREIARLRRQ 97 (165)
Q Consensus 79 ~LE~eNR~l~~EieRLr~q 97 (165)
++..+|..|++|.++|+.+
T Consensus 27 ka~~~~~kL~~en~qlk~E 45 (87)
T PF10883_consen 27 KAKKQNAKLQKENEQLKTE 45 (87)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444455555555555543
No 206
>KOG2314|consensus
Probab=28.14 E-value=3.5e+02 Score=27.12 Aligned_cols=23 Identities=26% Similarity=0.323 Sum_probs=17.9
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHH
Q psy4946 131 HLASLQDSRRHLMVQLEGLMRLL 153 (165)
Q Consensus 131 RM~iLedhnRQLe~QLerLr~LL 153 (165)
-|+.|=++|||||.|-...|...
T Consensus 628 AsrElvekrRqlm~~f~~yR~~~ 650 (698)
T KOG2314|consen 628 ASRELVEKRRQLMEQFTEYREKI 650 (698)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788889999999977766543
No 207
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=27.93 E-value=3.6e+02 Score=22.50 Aligned_cols=75 Identities=16% Similarity=0.233 Sum_probs=47.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLL 153 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL 153 (165)
+.=|..||++.+.+-.-+..|....+... .....+=..++.|.++-.+.|.|....+..-..|+.++..|-.-|
T Consensus 140 E~ki~eLE~el~~~~~~lk~lE~~~~~~~------~re~~~e~~i~~L~~~lkeaE~Rae~aE~~v~~Le~~id~le~eL 213 (237)
T PF00261_consen 140 ESKIKELEEELKSVGNNLKSLEASEEKAS------EREDEYEEKIRDLEEKLKEAENRAEFAERRVKKLEKEIDRLEDEL 213 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHhhhhhhhhh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455555555555555554444333211 122334455888889999999999888888888888888887666
Q ss_pred h
Q psy4946 154 K 154 (165)
Q Consensus 154 ~ 154 (165)
.
T Consensus 214 ~ 214 (237)
T PF00261_consen 214 E 214 (237)
T ss_dssp H
T ss_pred H
Confidence 5
No 208
>PF09744 Jnk-SapK_ap_N: JNK_SAPK-associated protein-1; InterPro: IPR019143 This entry represents the N-terminal 200 residues of a set of proteins conserved from yeasts to humans. Most of the proteins in this entry have a RhoGEF domain (IPR000219 from INTERPRO) at their C-terminal end.
Probab=27.80 E-value=3.3e+02 Score=22.08 Aligned_cols=58 Identities=26% Similarity=0.323 Sum_probs=33.1
Q ss_pred hhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHH----HHHHhHHHHHHHHHHHHHH
Q psy4946 82 SKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLA----SLQDSRRHLMVQLEGLMRL 152 (165)
Q Consensus 82 ~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~----iLedhnRQLe~QLerLr~L 152 (165)
..|..-..|+++|+...+ .|..+.+.-++.+...|.++- .++..++.|..|++.|...
T Consensus 43 ~~n~~~~~e~~~L~~d~e-------------~L~~q~~~ek~~r~~~e~~l~~~Ed~~~~e~k~L~~~v~~Le~e 104 (158)
T PF09744_consen 43 SRNQEHEVELELLREDNE-------------QLETQYEREKELRKQAEEELLELEDQWRQERKDLQSQVEQLEEE 104 (158)
T ss_pred HhhhhhhhHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467777777888886443 355444444444444555555 4444566676666665443
No 209
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=27.67 E-value=81 Score=27.78 Aligned_cols=27 Identities=26% Similarity=0.385 Sum_probs=23.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~ 98 (165)
..++.|.+|+++...|.+|++.|+.+-
T Consensus 197 ~~re~i~el~e~I~~L~~eV~~L~~~~ 223 (258)
T PF15397_consen 197 QFREEIDELEEEIPQLRAEVEQLQAQA 223 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 457899999999999999999999765
No 210
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=27.57 E-value=1.2e+02 Score=21.86 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=16.0
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHH
Q psy4946 115 MSELRALRMRKDELESHLASLQD 137 (165)
Q Consensus 115 laEarlLRQhK~rLE~RM~iLed 137 (165)
...+.-|-++-.+||+|+++||.
T Consensus 41 ~~~L~~L~~~a~rm~eRI~tLE~ 63 (75)
T TIGR02976 41 QALLQELYAKADRLEERIDTLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344555888888889888874
No 211
>KOG3129|consensus
Probab=27.54 E-value=83 Score=27.53 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=13.7
Q ss_pred hHHHHHHHHHHhHhHHHHHHHH
Q psy4946 113 ALMSELRALRMRKDELESHLAS 134 (165)
Q Consensus 113 eLlaEarlLRQhK~rLE~RM~i 134 (165)
.+.+|++-|-+.|.++|++|..
T Consensus 18 ~~~~~~~eLm~~K~eiE~qin~ 39 (231)
T KOG3129|consen 18 NTKSELKELMDKKTEIETQINE 39 (231)
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 4566777776666666655543
No 212
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=26.84 E-value=5.6e+02 Score=24.36 Aligned_cols=33 Identities=15% Similarity=0.195 Sum_probs=23.9
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcC
Q psy4946 125 KDELESHLASLQDSRRHLMVQLEGLMRLLKTHQ 157 (165)
Q Consensus 125 K~rLE~RM~iLedhnRQLe~QLerLr~LL~~~~ 157 (165)
-.+|+..+...+...++|..+-+.|+.+++.-.
T Consensus 133 ~~~L~~~i~~r~~~~~~l~~~~~~l~~il~~~~ 165 (779)
T PRK11091 133 FEQLKNEIKEREETQIELEQQSSLLRSFLDASP 165 (779)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 456777777777777778888888888887543
No 213
>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF.
Probab=26.76 E-value=5.6e+02 Score=24.36 Aligned_cols=23 Identities=17% Similarity=0.332 Sum_probs=9.2
Q ss_pred HhHhHHHHHHHHHHHhHHHHHHH
Q psy4946 123 MRKDELESHLASLQDSRRHLMVQ 145 (165)
Q Consensus 123 QhK~rLE~RM~iLedhnRQLe~Q 145 (165)
.+..+|+.+...|++..++|...
T Consensus 101 kre~~Le~ke~~L~~re~eLee~ 123 (514)
T TIGR03319 101 KKEENLEKKEKELSNKEKNLDEK 123 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333444444444444433333
No 214
>PHA02562 46 endonuclease subunit; Provisional
Probab=26.74 E-value=4.9e+02 Score=23.70 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=12.2
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHhHHHHHHHH
Q psy4946 116 SELRALRMRKDELESHLASLQDSRRHLMVQL 146 (165)
Q Consensus 116 aEarlLRQhK~rLE~RM~iLedhnRQLe~QL 146 (165)
.+++.|+....+||.+...+++--++|+.+|
T Consensus 358 ~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l 388 (562)
T PHA02562 358 DKAKKVKAAIEELQAEFVDNAEELAKLQDEL 388 (562)
T ss_pred HHHHHHHHHHHHHHhhhhchHHHHHHHHHHH
Confidence 3334444444444444333333333333333
No 215
>PRK03947 prefoldin subunit alpha; Reviewed
Probab=26.74 E-value=2.7e+02 Score=21.04 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=30.4
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 116 SELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 116 aEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
.++..|......|.+..+.|+.+..+|...+..+...++.
T Consensus 6 ~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~ 45 (140)
T PRK03947 6 QELEELAAQLQALQAQIEALQQQLEELQASINELDTAKET 45 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777778888888888888888888888777753
No 216
>KOG0962|consensus
Probab=26.70 E-value=3.6e+02 Score=29.11 Aligned_cols=73 Identities=23% Similarity=0.284 Sum_probs=54.2
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Q psy4946 77 VSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTH 156 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~ 156 (165)
...|+++-+++-+|+.+++.|.... .-...-.|...|...++.|=..-.-+...++|++.|...+++-|.++
T Consensus 1010 ~~~l~~q~~e~~re~~~ld~Qi~~~--------~~~~~~ee~~~L~~~~~~l~se~~~~lg~~ke~e~~i~~~k~eL~~~ 1081 (1294)
T KOG0962|consen 1010 LRNLERKLKELERELSELDKQILEA--------DIKSVKEERVKLEEEREKLSSEKNLLLGEMKQYESQIKKLKQELREK 1081 (1294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHhhhh
Confidence 3467777888888888888877521 11234467777888888888888888888889999999998888755
Q ss_pred C
Q psy4946 157 Q 157 (165)
Q Consensus 157 ~ 157 (165)
.
T Consensus 1082 ~ 1082 (1294)
T KOG0962|consen 1082 D 1082 (1294)
T ss_pred h
Confidence 4
No 217
>COG1422 Predicted membrane protein [Function unknown]
Probab=26.21 E-value=4.2e+02 Score=22.73 Aligned_cols=49 Identities=16% Similarity=0.360 Sum_probs=27.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHH
Q psy4946 77 VSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQL 146 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QL 146 (165)
..++.+.-++.|+|++..+.+ .|..-+..++ |.||.+++|++.=.+.|-
T Consensus 74 m~~~qk~m~efq~e~~eA~~~------------~d~~~lkkLq---------~~qmem~~~Q~elmk~qf 122 (201)
T COG1422 74 MKELQKMMKEFQKEFREAQES------------GDMKKLKKLQ---------EKQMEMMDDQRELMKMQF 122 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHh------------CCHHHHHHHH---------HHHHHHHHHHHHHHHHhh
Confidence 345555555566665555543 3445554443 567777777766555553
No 218
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=25.99 E-value=73 Score=21.09 Aligned_cols=23 Identities=22% Similarity=0.471 Sum_probs=13.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHH
Q psy4946 73 QRELVSQLESKNREIMREIARLR 95 (165)
Q Consensus 73 ~~~lIa~LE~eNR~l~~EieRLr 95 (165)
.+.=+++++.+.+.+++|+++||
T Consensus 46 ~r~~~~~~~k~l~~le~e~~~lr 68 (68)
T PF06305_consen 46 LRRRIRRLRKELKKLEKELEQLR 68 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 44455566666666666666553
No 219
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=25.95 E-value=4e+02 Score=22.45 Aligned_cols=41 Identities=24% Similarity=0.256 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 114 LMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 114 LlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
+=+|+.-||..-.+.-...+.|-+.+=.|...+.--|+||.
T Consensus 267 le~el~~l~~~~~~~~~ey~~Ll~~K~~Ld~EIatYR~LLE 307 (312)
T PF00038_consen 267 LEEELAELREEMARQLREYQELLDVKLALDAEIATYRKLLE 307 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 33444444444444444445555555555555555555554
No 220
>PF15233 SYCE1: Synaptonemal complex central element protein 1
Probab=25.79 E-value=1.5e+02 Score=24.00 Aligned_cols=36 Identities=36% Similarity=0.320 Sum_probs=25.7
Q ss_pred HHHHHhHhHHHHHHHHHHHh------HHHHHHHHHHHHHHHh
Q psy4946 119 RALRMRKDELESHLASLQDS------RRHLMVQLEGLMRLLK 154 (165)
Q Consensus 119 rlLRQhK~rLE~RM~iLedh------nRQLe~QLerLr~LL~ 154 (165)
++|+.|..+-|..-+.-+.. |...+.||+.||.-=|
T Consensus 65 ~iLqlhcqeke~eaqrq~~~~~eck~R~~fe~qLE~lm~qHK 106 (134)
T PF15233_consen 65 RILQLHCQEKESEAQRQQTLLQECKLRLDFEEQLEDLMGQHK 106 (134)
T ss_pred HHHHHHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHH
Confidence 67777777777766655554 7778888888886433
No 221
>PRK10920 putative uroporphyrinogen III C-methyltransferase; Provisional
Probab=25.73 E-value=5.4e+02 Score=23.83 Aligned_cols=22 Identities=18% Similarity=0.382 Sum_probs=15.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHh
Q psy4946 78 SQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 78 a~LE~eNR~l~~EieRLr~q~e 99 (165)
.+...+|..|+.+++.+..+..
T Consensus 63 ~~~~~~~~~L~~ql~~~~~~~~ 84 (390)
T PRK10920 63 QNQTATNDALANQLTALQKAQE 84 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3456688888888888877654
No 222
>KOG0161|consensus
Probab=25.40 E-value=4.9e+02 Score=29.33 Aligned_cols=44 Identities=30% Similarity=0.365 Sum_probs=26.5
Q ss_pred ChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 111 NPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 111 ~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
|..|-.|+.=|-..+++++.+.+.||-.+|.|+.+.+.|..-|.
T Consensus 1493 nk~l~~ei~dl~~~~~e~~k~v~elek~~r~le~e~~elQ~aLe 1536 (1930)
T KOG0161|consen 1493 NKNLSQEIEDLEEQKDEGGKRVHELEKEKRRLEQEKEELQAALE 1536 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555566666666666666666666666666655554
No 223
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=25.38 E-value=4.2e+02 Score=22.45 Aligned_cols=65 Identities=26% Similarity=0.319 Sum_probs=47.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLL 153 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL 153 (165)
..|-++-|++-..--.||.+++.+|. +|+..|+-.-.+.|-+++.|++.=.|-.-.-+.|-++-
T Consensus 135 ~aLK~hAeekL~~ANeei~~v~~~~~----------------~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELtkIC 198 (207)
T PF05010_consen 135 QALKAHAEEKLEKANEEIAQVRSKHQ----------------AELLALQASLKKEEMKVQSLEESLEQKTKENEELTKIC 198 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667777776677778888888775 55667777667778888888888777777767666654
Q ss_pred h
Q psy4946 154 K 154 (165)
Q Consensus 154 ~ 154 (165)
+
T Consensus 199 D 199 (207)
T PF05010_consen 199 D 199 (207)
T ss_pred H
Confidence 4
No 224
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=25.31 E-value=71 Score=23.15 Aligned_cols=18 Identities=17% Similarity=0.396 Sum_probs=13.2
Q ss_pred HHHHhHhHHHHHHHHHHH
Q psy4946 120 ALRMRKDELESHLASLQD 137 (165)
Q Consensus 120 lLRQhK~rLE~RM~iLed 137 (165)
-|-+.-.+|+.|+++||.
T Consensus 46 ~L~~~a~rm~eRI~tLE~ 63 (75)
T PF06667_consen 46 ELYEQAERMEERIETLER 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444777888888888764
No 225
>PRK12704 phosphodiesterase; Provisional
Probab=25.25 E-value=6e+02 Score=24.20 Aligned_cols=8 Identities=0% Similarity=0.090 Sum_probs=2.9
Q ss_pred HHhhhhHH
Q psy4946 79 QLESKNRE 86 (165)
Q Consensus 79 ~LE~eNR~ 86 (165)
+.+.|...
T Consensus 61 eaeeE~~~ 68 (520)
T PRK12704 61 EAKEEIHK 68 (520)
T ss_pred HHHHHHHH
Confidence 33333333
No 226
>KOG4797|consensus
Probab=25.21 E-value=1e+02 Score=24.46 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~ 96 (165)
-+++-|.+||++|+-|.+|-.-||.
T Consensus 71 ~Lk~qI~eL~er~~~Le~EN~lLk~ 95 (123)
T KOG4797|consen 71 VLKEQIRELEERNSALERENSLLKT 95 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3577899999999999999888875
No 227
>PF03954 Lectin_N: Hepatic lectin, N-terminal domain; InterPro: IPR005640 Animal lectins display a wide variety of architectures. They are classified according to the carbohydrate-recognition domain (CRD) of which there are two main types, S-type and C-type. C-type lectins display a wide range of specificities. They require Ca2+ for their activity They are found predominantly but not exclusively in vertebrates. This entry presents N-terminal domain, which is found in C-type lectins.; GO: 0005529 sugar binding, 0016020 membrane
Probab=25.11 E-value=2.5e+02 Score=22.78 Aligned_cols=52 Identities=21% Similarity=0.407 Sum_probs=36.7
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHH
Q psy4946 76 LVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQ 136 (165)
Q Consensus 76 lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLe 136 (165)
+|-=+=..|..+++|++-||..-. .-....++|.+.|--|-+.+..+|..|+
T Consensus 49 ~IcVigsQ~~qlq~dl~tLretfs---------NFssst~aEvqaL~S~G~sl~~kVtSLe 100 (138)
T PF03954_consen 49 VICVIGSQNSQLQRDLRTLRETFS---------NFSSSTLAEVQALSSQGGSLQDKVTSLE 100 (138)
T ss_pred HHHhhcCccHHHHHHHHHHHHHHh---------cccHHHHHHHHHHHhccccHHhHcccHH
Confidence 344455678899999999987442 1223477889988888888888876544
No 228
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=25.10 E-value=3.9e+02 Score=24.24 Aligned_cols=20 Identities=35% Similarity=0.473 Sum_probs=9.4
Q ss_pred HHHHHHhHhHHHHHHHHHHH
Q psy4946 118 LRALRMRKDELESHLASLQD 137 (165)
Q Consensus 118 arlLRQhK~rLE~RM~iLed 137 (165)
+.+++++..-|+.....++.
T Consensus 344 ~~~l~~~~~~L~~~~~~l~~ 363 (458)
T COG3206 344 LALLEQQEAALEKELAQLKG 363 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44445554445444444443
No 229
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus []. This entry represents the subunit THOC7, which is found in higher eukaryotes, and the non-homologous subunit Mft1p found in yeast. The funtions of these subunits are unknown, and it is not known if these subunits are functionally equivalent.
Probab=24.99 E-value=2.4e+02 Score=21.50 Aligned_cols=18 Identities=22% Similarity=0.407 Sum_probs=11.7
Q ss_pred HHHHHHHHHHhHhHHHHH
Q psy4946 114 LMSELRALRMRKDELESH 131 (165)
Q Consensus 114 LlaEarlLRQhK~rLE~R 131 (165)
=|.+|+.+|++|-+.++=
T Consensus 103 ~L~~ak~~r~~k~eyd~L 120 (139)
T PF05615_consen 103 ELEEAKRVRQNKEEYDAL 120 (139)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 356677777777755543
No 230
>PRK15178 Vi polysaccharide export inner membrane protein VexD; Provisional
Probab=24.98 E-value=2.5e+02 Score=26.51 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=12.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHH
Q psy4946 75 ELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 75 ~lIa~LE~eNR~l~~EieRLr~ 96 (165)
.+|+.||.+--.++.|+..|+.
T Consensus 286 ~lI~~Le~qLa~~~aeL~~L~~ 307 (434)
T PRK15178 286 QLIAGFETQLAEAKAEYAQLMV 307 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 4555666555555555555543
No 231
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=24.89 E-value=4.9e+02 Score=23.04 Aligned_cols=66 Identities=23% Similarity=0.319 Sum_probs=39.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQ 145 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~Q 145 (165)
-.-.++|..+++.+.+++..++....... .....+.+|+.-.---|+.||.=-.-||.+|+.|...
T Consensus 28 ~kk~~ell~e~k~~~k~~~~~~Kk~~~l~------kek~~l~~E~~k~~~~k~KLE~LCRELQk~Nk~lkeE 93 (309)
T PF09728_consen 28 CKKYAELLEEMKRLQKQLKKLQKKQEQLQ------KEKDQLQSELSKAILAKSKLESLCRELQKQNKKLKEE 93 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666666666665555443211 1222355555555567788888888888888887754
No 232
>PF10211 Ax_dynein_light: Axonemal dynein light chain; InterPro: IPR019347 Axonemal dynein light chain proteins play a dynamic role in flagellar and cilial motility. Eukaryotic cilia and flagella are complex organelles consisting of a core structure, the axoneme, which is composed of nine microtubule doublets forming a cylinder that surrounds a pair of central singlet microtubules. This ultra-structural arrangement seems to be one of the most stable micro-tubular assemblies known and is responsible for the flagellar and ciliary movement of a large number of organisms ranging from protozoan to mammals. This light chain interacts directly with the N-terminal half of the heavy chains [].
Probab=24.79 E-value=3.9e+02 Score=21.89 Aligned_cols=66 Identities=21% Similarity=0.257 Sum_probs=34.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4946 76 LVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLL 153 (165)
Q Consensus 76 lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL 153 (165)
|+..+=++++.+..-|..|=...-.-+ ....+-+ .+-|.+++.++..|+..+.+|..++..|..-.
T Consensus 85 LL~rvrde~~~~l~~y~~l~~s~~~f~-------~rk~l~~-----e~~~~~l~~~i~~L~~e~~~L~~~~~~l~~~~ 150 (189)
T PF10211_consen 85 LLLRVRDEYRMTLDAYQTLYESSIAFG-------MRKALQA-----EQGKQELEEEIEELEEEKEELEKQVQELKNKC 150 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777788877777776643221000 0001111 12355666666666666666666665555443
No 233
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=24.75 E-value=2.7e+02 Score=19.99 Aligned_cols=29 Identities=17% Similarity=0.213 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4946 70 SRAQRELVSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 70 ~~e~~~lIa~LE~eNR~l~~EieRLr~q~ 98 (165)
...+..+|..||+|-..+.-||..|..+-
T Consensus 12 ~~~Ls~vl~~LqDE~~hm~~e~~~L~~~~ 40 (79)
T PF06657_consen 12 GEALSEVLKALQDEFGHMKMEHQELQDEY 40 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999995543
No 234
>PF09403 FadA: Adhesion protein FadA; InterPro: IPR018543 FadA (Fusobacterium adhesin A) is an adhesin which forms two alpha helices. ; PDB: 3ETZ_B 3ETY_A 2GL2_B 3ETX_C 3ETW_A.
Probab=24.56 E-value=3.5e+02 Score=21.28 Aligned_cols=17 Identities=24% Similarity=0.356 Sum_probs=8.0
Q ss_pred HhhhhHHHHHHHHHHHH
Q psy4946 80 LESKNREIMREIARLRR 96 (165)
Q Consensus 80 LE~eNR~l~~EieRLr~ 96 (165)
++.+-..|-.||++|..
T Consensus 25 v~~~l~~LEae~q~L~~ 41 (126)
T PF09403_consen 25 VESELNQLEAEYQQLEQ 41 (126)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444455555544
No 235
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=24.53 E-value=4.5e+02 Score=22.56 Aligned_cols=25 Identities=16% Similarity=0.271 Sum_probs=14.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~ 98 (165)
+.-|+....++-.+..|++.++.+.
T Consensus 203 ek~~~~~~~k~e~~e~e~~~l~e~~ 227 (297)
T PF02841_consen 203 EKEIEEEQAKAEAAEKEKEKLEEKQ 227 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444445555666666666666544
No 236
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=24.51 E-value=1.8e+02 Score=21.29 Aligned_cols=26 Identities=35% Similarity=0.351 Sum_probs=18.5
Q ss_pred HHHHhHhHHHHHHHHHHHhHHHHHHH
Q psy4946 120 ALRMRKDELESHLASLQDSRRHLMVQ 145 (165)
Q Consensus 120 lLRQhK~rLE~RM~iLedhnRQLe~Q 145 (165)
+|.++...|++++.-|+...+.|+.-
T Consensus 79 ~l~~~~~~l~~~i~~l~~~~~~l~~~ 104 (108)
T cd01107 79 LLREKLAELEAEIEELQRILRLLEDR 104 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888887777766666543
No 237
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=24.34 E-value=4.3e+02 Score=22.26 Aligned_cols=7 Identities=29% Similarity=0.401 Sum_probs=3.3
Q ss_pred HHHHHHh
Q psy4946 43 ARYAAKL 49 (165)
Q Consensus 43 arY~~~L 49 (165)
++|....
T Consensus 176 ~~ye~~~ 182 (312)
T PF00038_consen 176 AQYEEIA 182 (312)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3565444
No 238
>KOG0161|consensus
Probab=24.10 E-value=4.5e+02 Score=29.62 Aligned_cols=79 Identities=22% Similarity=0.242 Sum_probs=49.9
Q ss_pred cchHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHH
Q psy4946 68 DTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLE 147 (165)
Q Consensus 68 d~~~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLe 147 (165)
..++.++.=|+.|+++--+.+.|.+..-...-.+. .+-.-+..|++-=|.|--.||.--++||..++.|.++|.
T Consensus 1716 ~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~------~~a~~~~~el~~Eq~~~~~le~~k~~LE~~~kdLq~rL~ 1789 (1930)
T KOG0161|consen 1716 AEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQ------ADAAKLAEELRKEQETSQKLERLKKSLERQVKDLQLRLD 1789 (1930)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH------HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555554444444443332211111 122347788888889999999999999999999999998
Q ss_pred HHHHH
Q psy4946 148 GLMRL 152 (165)
Q Consensus 148 rLr~L 152 (165)
.+-..
T Consensus 1790 e~E~~ 1794 (1930)
T KOG0161|consen 1790 EAEQA 1794 (1930)
T ss_pred HHHHh
Confidence 77543
No 239
>PF09849 DUF2076: Uncharacterized protein conserved in bacteria (DUF2076); InterPro: IPR018648 This family of hypothetical prokaryotic proteins has no known function but includes putative perimplasmic ligand-binding sensor proteins.
Probab=24.08 E-value=4.8e+02 Score=22.69 Aligned_cols=26 Identities=23% Similarity=0.084 Sum_probs=18.4
Q ss_pred HhHhHHHHHHHHHHHhHHHHHHHHHH
Q psy4946 123 MRKDELESHLASLQDSRRHLMVQLEG 148 (165)
Q Consensus 123 QhK~rLE~RM~iLedhnRQLe~QLer 148 (165)
|.-==+|+=+..++.+.++|+.||+.
T Consensus 48 Q~vlvQE~AL~~a~~ri~eLe~ql~q 73 (247)
T PF09849_consen 48 QTVLVQEQALKQAQARIQELEAQLQQ 73 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344677777788888888888766
No 240
>PF10018 Med4: Vitamin-D-receptor interacting Mediator subunit 4; InterPro: IPR019258 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Members of this family represent the Med4 subunit of the Mediator (Med) complex [, ]. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=24.03 E-value=3e+02 Score=22.25 Aligned_cols=44 Identities=20% Similarity=0.342 Sum_probs=34.0
Q ss_pred ChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 111 NPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 111 ~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
|.+|-.-+..|.+|.. +..|+..|......|..|+..+.+-|..
T Consensus 11 d~~L~~~L~~l~~hq~-~~~~I~~L~~e~~~ld~~i~~~~~~L~~ 54 (188)
T PF10018_consen 11 DDELSSALEELQEHQE-NQARIQQLRAEIEELDEQIRDILKQLKE 54 (188)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777788877754 5889999999999998888887777664
No 241
>PF14645 Chibby: Chibby family
Probab=23.91 E-value=1.6e+02 Score=22.68 Aligned_cols=29 Identities=21% Similarity=0.355 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 127 ELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 127 rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
+|..+++.|++-|.-|..+.+=|+-+|..
T Consensus 75 ~l~~~n~~L~EENN~Lklk~elLlDMLte 103 (116)
T PF14645_consen 75 RLRKENQQLEEENNLLKLKIELLLDMLTE 103 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999999999999998864
No 242
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=23.74 E-value=5.3e+02 Score=23.00 Aligned_cols=23 Identities=13% Similarity=0.406 Sum_probs=10.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHH
Q psy4946 76 LVSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 76 lIa~LE~eNR~l~~EieRLr~q~ 98 (165)
++..|.++...|+.|+..|+...
T Consensus 173 ~~~~l~~~~~~L~~e~~~L~~~~ 195 (312)
T smart00787 173 IKPKLRDRKDALEEELRQLKQLE 195 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhH
Confidence 33344444444444444444433
No 243
>PRK09458 pspB phage shock protein B; Provisional
Probab=23.67 E-value=80 Score=23.14 Aligned_cols=18 Identities=11% Similarity=0.374 Sum_probs=13.5
Q ss_pred HHHHhHhHHHHHHHHHHH
Q psy4946 120 ALRMRKDELESHLASLQD 137 (165)
Q Consensus 120 lLRQhK~rLE~RM~iLed 137 (165)
-|-..-.+++.|+++||+
T Consensus 46 ~L~~~A~rm~~RI~tLE~ 63 (75)
T PRK09458 46 QLTEKAERMRERIQALEA 63 (75)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344777888999988875
No 244
>PF04340 DUF484: Protein of unknown function, DUF484; InterPro: IPR007435 This family consists of several proteins of uncharacterised function.; PDB: 3E98_B.
Probab=23.64 E-value=2.4e+02 Score=23.10 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=23.4
Q ss_pred HHHHHHHhHhHHHHHHHHHHHh---HHHHHHHHHHH
Q psy4946 117 ELRALRMRKDELESHLASLQDS---RRHLMVQLEGL 149 (165)
Q Consensus 117 EarlLRQhK~rLE~RM~iLedh---nRQLe~QLerL 149 (165)
-+..||++..+||.++..|-+. |.++...+++|
T Consensus 48 Q~~~LR~~~~~L~~~l~~Li~~Ar~Ne~~~~~~~~l 83 (225)
T PF04340_consen 48 QLERLRERNRQLEEQLEELIENARENEAIFQRLHRL 83 (225)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999988765 44455554444
No 245
>PRK12704 phosphodiesterase; Provisional
Probab=23.56 E-value=6.5e+02 Score=23.98 Aligned_cols=8 Identities=50% Similarity=0.787 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q psy4946 89 REIARLRR 96 (165)
Q Consensus 89 ~EieRLr~ 96 (165)
.|+.+.|.
T Consensus 64 eE~~~~R~ 71 (520)
T PRK12704 64 EEIHKLRN 71 (520)
T ss_pred HHHHHHHH
Confidence 34444443
No 246
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=23.42 E-value=3.4e+02 Score=20.68 Aligned_cols=72 Identities=25% Similarity=0.302 Sum_probs=42.1
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy4946 76 LVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGL 149 (165)
Q Consensus 76 lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerL 149 (165)
.|..|..+.-.+..+|..|+.+-+.....= ...-...-.+=..|...+..++.|..-|.+.|+=|-.||+.|
T Consensus 60 ~L~~lr~e~~~~~~~~~~l~~~~~~a~~~l--~~~e~sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~QlE~l 131 (132)
T PF07926_consen 60 ELQQLREELQELQQEINELKAEAESAKAEL--EESEASWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQLESL 131 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 555666666667777777776544221000 000112334445666777777778888888888888777653
No 247
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.37 E-value=2.1e+02 Score=24.92 Aligned_cols=33 Identities=36% Similarity=0.337 Sum_probs=24.0
Q ss_pred HHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946 118 LRALRMRKDELESHLASLQDSRRHLMVQLEGLM 150 (165)
Q Consensus 118 arlLRQhK~rLE~RM~iLedhnRQLe~QLerLr 150 (165)
+..+|+|-.+||.+|+.|.++-++=+.=-.+++
T Consensus 47 l~r~R~~~~~Le~~l~~L~~~A~~N~~lf~r~~ 79 (218)
T COG3159 47 LARLRNRIRELEEELAALMENARANERLFYRLH 79 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 557899999999999999987554443333333
No 248
>PHA02562 46 endonuclease subunit; Provisional
Probab=23.32 E-value=5.7e+02 Score=23.27 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=19.2
Q ss_pred HHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 121 LRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 121 LRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
+.+.+..|+..+..|+.-...++..|..|..-|+
T Consensus 356 ~~~~~~~l~~ei~~l~~~~~~~~~~l~~l~~~l~ 389 (562)
T PHA02562 356 LVDKAKKVKAAIEELQAEFVDNAEELAKLQDELD 389 (562)
T ss_pred HHHHHHHHHHHHHHHHhhhhchHHHHHHHHHHHH
Confidence 4455555666666666666655555555554443
No 249
>cd00427 Ribosomal_L29_HIP Ribosomal L29 protein/HIP. L29 is a protein of the large ribosomal Subunit. A homolog, called heparin/heparan sulfate interacting protein (HIP), has also been identified in mammals. L29 is located on the surface of the large ribosomal subunit, where it participates in forming a protein ring that surrounds the polypeptide exit channel, providing structural support for the ribosome. L29 is involved in forming the translocon binding site, along with L19, L22, L23, L24, and L31e. In addition, L29 and L23 form the interaction site for trigger factor (TF) on the ribosomal surface, adjacent to the exit tunnel. L29 forms numerous interactions with L23 and with the 23S rRNA. In some eukaryotes, L29 is referred to as L35, which is distinct from L35 found in bacteria and some eukaryotes (primarily plastids and mitochondria). The mammalian homolog, HIP, is found on the surface of many tissues and cell lines. It is believed to play a role in cell adhesion and modulat
Probab=23.30 E-value=2.3e+02 Score=18.79 Aligned_cols=22 Identities=32% Similarity=0.448 Sum_probs=19.2
Q ss_pred HHHhhhhHHHHHHHHHHHHHHh
Q psy4946 78 SQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 78 a~LE~eNR~l~~EieRLr~q~e 99 (165)
.+|+++--++.+|+-.||-++.
T Consensus 9 ~eL~~~l~~l~~elf~Lr~q~~ 30 (57)
T cd00427 9 EELQEKLDELKKELFNLRFQKA 30 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888899999999998885
No 250
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=23.29 E-value=3.3e+02 Score=20.98 Aligned_cols=22 Identities=23% Similarity=0.364 Sum_probs=9.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLR 95 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr 95 (165)
+..|+.|.+||-.|.-|=+.||
T Consensus 28 K~~~~el~EEN~~L~iEN~~Lr 49 (110)
T PRK13169 28 KKQLAELLEENTALRLENDKLR 49 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444443333
No 251
>KOG4360|consensus
Probab=23.21 E-value=6.2e+02 Score=25.07 Aligned_cols=35 Identities=26% Similarity=0.268 Sum_probs=18.2
Q ss_pred HHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 120 ALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 120 lLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
+.-+.-+.|++....|||.+-++|.-|+.--.-|+
T Consensus 265 ~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk 299 (596)
T KOG4360|consen 265 AYKDAQRQLTAELEELEDKYAECMQMLHEAEEELK 299 (596)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344455555555555555555555555444444
No 252
>PF12240 Angiomotin_C: Angiomotin C terminal; InterPro: IPR024646 This domain represents the C-terminal region of angiomotin. Angiomotin regulates the action of angiogenesis-inhibitor angiostatin []. The C-terminal region of angiomotin appears to be involved in directing the protein chemotactically [].
Probab=23.09 E-value=4.9e+02 Score=22.42 Aligned_cols=83 Identities=25% Similarity=0.346 Sum_probs=45.0
Q ss_pred HHhhhhHH-HHHHHHHHHHHHhhhcccCCCC--CCChhHHHHHHHHHHhHh---HHHHHHHHHHHhH------HHHHHH-
Q psy4946 79 QLESKNRE-IMREIARLRRQQELEGVCASGF--EDNPALMSELRALRMRKD---ELESHLASLQDSR------RHLMVQ- 145 (165)
Q Consensus 79 ~LE~eNR~-l~~EieRLr~q~e~~~~~~~~~--~~~~eLlaEarlLRQhK~---rLE~RM~iLedhn------RQLe~Q- 145 (165)
+||.+-|. |-+|++-||.|+-....+.... ...+.|+. .||.+-. .||+-|--.|... ||--+.
T Consensus 24 ~lE~rLR~~lE~EL~~lr~qq~~~~~~~~~~~~~~~~~L~~---~LrEkEErILaLEad~~kWEqkYLEEs~mrq~a~dA 100 (205)
T PF12240_consen 24 QLERRLRTRLERELESLRAQQRQGNSSGSSSPSNNASNLKE---LLREKEERILALEADMTKWEQKYLEESAMRQFAMDA 100 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCcHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555543 7788999999886433222211 12333444 3444433 4677776666554 222111
Q ss_pred -----HHHHHHHHhhcCCCCCCCC
Q psy4946 146 -----LEGLMRLLKTHQGTSPNSS 164 (165)
Q Consensus 146 -----LerLr~LL~~~~~~sp~ss 164 (165)
=+|...+++....+|+++|
T Consensus 101 aa~aa~~rdttiI~~s~~~s~~~s 124 (205)
T PF12240_consen 101 AATAAAQRDTTIINHSPSESYNSS 124 (205)
T ss_pred HhhhHHHHHHHHHhcCCCCCCCcc
Confidence 3466667777777777554
No 253
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=23.08 E-value=2e+02 Score=22.46 Aligned_cols=32 Identities=19% Similarity=0.167 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHH
Q psy4946 113 ALMSELRALRMRKDELESHLASLQDSRRHLMV 144 (165)
Q Consensus 113 eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~ 144 (165)
.+..+...+..+..+||+++..|++-..+|+.
T Consensus 78 ~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l~~ 109 (134)
T cd04779 78 EVAQEVQLVCDQIDGLEHRLKQLKPIASQTDR 109 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667777778888888888877777777665
No 254
>KOG4643|consensus
Probab=22.99 E-value=7.5e+02 Score=26.53 Aligned_cols=81 Identities=20% Similarity=0.135 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccC------------------CCCCCChhHHHHHHHHHHhHhHHHHHH
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRRQQELEGVCA------------------SGFEDNPALMSELRALRMRKDELESHL 132 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~------------------~~~~~~~eLlaEarlLRQhK~rLE~RM 132 (165)
.+.-..+-+|+++.-.+.+||.+|+.+.+..-.-+ ..++.-.+=+-+.--+..|-.+|+.-=
T Consensus 194 EEK~enll~lr~eLddleae~~klrqe~~e~l~ea~ra~~yrdeldalre~aer~d~~ykerlmDs~fykdRveelkedN 273 (1195)
T KOG4643|consen 194 EEKFENLLRLRNELDDLEAEISKLRQEIEEFLDEAHRADRYRDELDALREQAERPDTTYKERLMDSDFYKDRVEELKEDN 273 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHhhhcCCCccchhhhhhHHHHHHHHHHHhhh
Q ss_pred HHHHHhHHHHHHHHHHHHH
Q psy4946 133 ASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 133 ~iLedhnRQLe~QLerLr~ 151 (165)
++|++.-.=|+.||++||.
T Consensus 274 ~vLleekeMLeeQLq~lra 292 (1195)
T KOG4643|consen 274 RVLLEEKEMLEEQLQKLRA 292 (1195)
T ss_pred HHHHHHHHHHHHHHHHHHh
No 255
>KOG3129|consensus
Probab=22.86 E-value=1.5e+02 Score=26.01 Aligned_cols=40 Identities=25% Similarity=0.429 Sum_probs=30.9
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCC
Q psy4946 112 PALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQGT 159 (165)
Q Consensus 112 ~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~~~~ 159 (165)
.+.++.+. +|+++.+=| +.++++|.|+.+++..|.++..+
T Consensus 11 ~~~~ag~~----~~~~~~eLm----~~K~eiE~qin~~~~vL~~~~~~ 50 (231)
T KOG3129|consen 11 EESMAGAN----TKSELKELM----DKKTEIETQINELVEVLENNGGT 50 (231)
T ss_pred hhhhccch----hHHHHHHHH----HHHHHHHHHHHHHHHHHhcCCCc
Confidence 34555554 677776544 78999999999999999988754
No 256
>cd04776 HTH_GnyR Helix-Turn-Helix DNA binding domain of the regulatory protein GnyR. Putative helix-turn-helix (HTH) regulatory protein, GnyR, and other related proteins. GnyR belongs to the gnyRDBHAL cluster, which is involved in acyclic isoprenoid degradation in Pseudomonas aeruginosa. These proteins share the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their conserved N-terminal domains contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules.
Probab=22.70 E-value=2.9e+02 Score=20.70 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=17.7
Q ss_pred HHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 122 RMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 122 RQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
+....-|+.+...|+....+|...++.|...+.
T Consensus 79 ~~~~~~l~~~~~~l~~~~~~l~~~~~~L~~~~~ 111 (118)
T cd04776 79 EKMLEKIEKRRAELEQQRRDIDAALAELDAAEE 111 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555554443
No 257
>PTZ00419 valyl-tRNA synthetase-like protein; Provisional
Probab=22.67 E-value=4.2e+02 Score=26.99 Aligned_cols=69 Identities=14% Similarity=0.187 Sum_probs=39.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy4946 73 QRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRL 152 (165)
Q Consensus 73 ~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~L 152 (165)
...-+++|+.+-..+++|+++++.+-...+ --....++++..-+ +++..+++.-..|...|..|++|
T Consensus 927 ~~~E~~rL~K~l~kl~~ei~~~~~kL~N~~---F~~kAp~~vve~e~----------~kl~~~~~~l~~l~~~l~~l~~~ 993 (995)
T PTZ00419 927 LKKELAKLEKKLAKLQKSLESYLKKISIPN---YEDKVPEDVRKLND----------EKIDELNEEIKQLEQAIEELKSL 993 (995)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCch---hhhcCCHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 566777888888888999988887542111 00011234443222 23334455555566667777776
Q ss_pred Hh
Q psy4946 153 LK 154 (165)
Q Consensus 153 L~ 154 (165)
++
T Consensus 994 ~~ 995 (995)
T PTZ00419 994 LK 995 (995)
T ss_pred hC
Confidence 64
No 258
>cd00592 HTH_MerR-like Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators. Helix-turn-helix (HTH) MerR-like transcription regulator, N-terminal domain. The MerR family transcription regulators have been shown to mediate responses to stress including exposure to heavy metals, drugs, or oxygen radicals in eubacterial and some archaeal species. They regulate transcription of multidrug/metal ion transporter genes and oxidative stress regulons by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=22.45 E-value=1.8e+02 Score=20.47 Aligned_cols=35 Identities=23% Similarity=0.149 Sum_probs=25.7
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 116 SELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 116 aEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
.-+..+.+... ++.+..+++.+..+|+.|++.|-.
T Consensus 64 ~~l~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~ 98 (100)
T cd00592 64 ELLDARDEELS-LAALLALLDEKLAELEEKIARLEA 98 (100)
T ss_pred HHHhcccccch-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445566655 788888888888888888877754
No 259
>PRK14549 50S ribosomal protein L29P; Provisional
Probab=22.41 E-value=2.6e+02 Score=19.53 Aligned_cols=47 Identities=23% Similarity=0.323 Sum_probs=30.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHH
Q psy4946 77 VSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESH 131 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~R 131 (165)
+.+|.++..++.+|+-.||.++-... ...||-- ++..|---.|+-+-
T Consensus 14 ~~eL~~~l~elk~eLf~LR~q~~~~~-----~l~n~~~---ir~~Rk~IARi~Tv 60 (69)
T PRK14549 14 PEEREEKLEELKLELLKERAQAAMGG-----APENPGR---IREIRRTIARILTI 60 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCc-----CccccHH---HHHHHHHHHHHHHH
Confidence 45889999999999999998885322 1244433 44444555554443
No 260
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=22.33 E-value=2.7e+02 Score=25.98 Aligned_cols=59 Identities=29% Similarity=0.330 Sum_probs=30.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHH-HhHhHHHHHHHHHHHhH---HHHHHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALR-MRKDELESHLASLQDSR---RHLMVQLEGL 149 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLR-QhK~rLE~RM~iLedhn---RQLe~QLerL 149 (165)
...+..+-+|-+++..++.+|...-+ -|+ +.+.++.--++.|||-+ ..||.||..+
T Consensus 211 ~~~l~~~~~el~eik~~~~~L~~~~e--------------------~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~ 270 (395)
T PF10267_consen 211 NLGLQKILEELREIKESQSRLEESIE--------------------KLKEQYQREYQFILEALQEERYRYERLEEQLNDL 270 (395)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 33444455555666666666665543 221 34444444455555543 3566776666
Q ss_pred HHH
Q psy4946 150 MRL 152 (165)
Q Consensus 150 r~L 152 (165)
+++
T Consensus 271 ~el 273 (395)
T PF10267_consen 271 TEL 273 (395)
T ss_pred HHH
Confidence 655
No 261
>PF11285 DUF3086: Protein of unknown function (DUF3086); InterPro: IPR021437 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=22.33 E-value=1.9e+02 Score=26.09 Aligned_cols=25 Identities=32% Similarity=0.574 Sum_probs=18.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 75 ELVSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 75 ~lIa~LE~eNR~l~~EieRLr~q~e 99 (165)
.-+++||+.--.|+.||+.|...++
T Consensus 4 ~~L~eL~qrk~~Lq~eIe~LerR~~ 28 (283)
T PF11285_consen 4 EALKELEQRKQALQIEIEQLERRRE 28 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888888888888888776544
No 262
>cd01107 HTH_BmrR Helix-Turn-Helix DNA binding domain of the BmrR transcription regulator. Helix-turn-helix (HTH) multidrug-efflux transporter transcription regulator, BmrR and YdfL of Bacillus subtilis, and related proteins; N-terminal domain. Bmr is a membrane protein which causes the efflux of a variety of toxic substances and antibiotics. BmrR is comprised of two distinct domains that harbor a regulatory (effector-binding) site and an active (DNA-binding) site. The conserved N-terminal domain contains a winged HTH motif that mediates DNA binding, while the C-terminal domain binds coactivating, toxic compounds. BmrR shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily that promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements.
Probab=22.20 E-value=2.9e+02 Score=20.16 Aligned_cols=32 Identities=28% Similarity=0.187 Sum_probs=18.9
Q ss_pred HhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 123 MRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 123 QhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
....-|+.++..|++..+.|...+..|...|+
T Consensus 75 ~~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l~ 106 (108)
T cd01107 75 ELRKLLREKLAELEAEIEELQRILRLLEDRLK 106 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455666666666666666666666655554
No 263
>PF04822 Takusan: Takusan; InterPro: IPR006907 This family includes several uncharacterised muridae (mouse and rat) proteins.
Probab=22.15 E-value=2.3e+02 Score=20.88 Aligned_cols=11 Identities=18% Similarity=0.268 Sum_probs=7.3
Q ss_pred HHHHHHHHHHh
Q psy4946 71 RAQRELVSQLE 81 (165)
Q Consensus 71 ~e~~~lIa~LE 81 (165)
++++.|+.+|.
T Consensus 19 k~lE~L~~eL~ 29 (84)
T PF04822_consen 19 KELERLKFELQ 29 (84)
T ss_pred HHHHHHHHHHH
Confidence 46677777765
No 264
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=22.15 E-value=4.4e+02 Score=21.57 Aligned_cols=18 Identities=33% Similarity=0.484 Sum_probs=7.1
Q ss_pred HHhhhhHHHHHHHHHHHH
Q psy4946 79 QLESKNREIMREIARLRR 96 (165)
Q Consensus 79 ~LE~eNR~l~~EieRLr~ 96 (165)
.+..+...++.+-+.|+.
T Consensus 24 ~~~~~l~~~~~~~~~l~~ 41 (302)
T PF10186_consen 24 ELRSELQQLKEENEELRR 41 (302)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333334444444333
No 265
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=22.11 E-value=5.4e+02 Score=24.20 Aligned_cols=56 Identities=18% Similarity=0.130 Sum_probs=36.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDE 127 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~r 127 (165)
..+.-+.++..+..++.++++.|+.+-+.-....+....+.+|-+|.+.|.....-
T Consensus 172 ~~~~~L~~l~~~~~~~~~eld~L~~ql~ELe~~~l~~~E~e~L~~e~~~L~n~e~i 227 (563)
T TIGR00634 172 KARQQLKDRQQKEQELAQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEKL 227 (563)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhCCcCCCcHHHHHHHHHHHhCHHHH
Confidence 44556667777777788888888877654443334445677788888777654433
No 266
>PF07851 TMPIT: TMPIT-like protein; InterPro: IPR012926 A number of members of this family are annotated as being transmembrane proteins induced by tumour necrosis factor alpha, but no literature was found to support this. ; GO: 0016021 integral to membrane
Probab=22.08 E-value=4e+02 Score=24.34 Aligned_cols=12 Identities=25% Similarity=0.534 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q psy4946 85 REIMREIARLRR 96 (165)
Q Consensus 85 R~l~~EieRLr~ 96 (165)
.+|.+|+++|+.
T Consensus 7 ~eL~~efq~Lqe 18 (330)
T PF07851_consen 7 EELQKEFQELQE 18 (330)
T ss_pred HHHHHHHHHHHH
Confidence 334444444443
No 267
>KOG4674|consensus
Probab=21.97 E-value=4.6e+02 Score=29.40 Aligned_cols=68 Identities=21% Similarity=0.224 Sum_probs=50.4
Q ss_pred hhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcC
Q psy4946 81 ESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQ 157 (165)
Q Consensus 81 E~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~~ 157 (165)
+..-..+.++|..++.++....+ ......+++. ++..+|++||..+...+.-+..-+..|+.-|.+-.
T Consensus 26 ~~~l~~k~~~~~~lk~e~~k~~v------~~eq~~~~~e---kK~~~l~q~~~~~~~q~~~~~~e~s~l~~~L~~~~ 93 (1822)
T KOG4674|consen 26 FKKLPKKSKDFESLKDEDGKTEV------NHEQQLSELE---KKILRLEQRLSDLSRQAKLLRNELSDLRNELEQLS 93 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhh------hHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33444778888888887763221 2223455544 99999999999999999999999999998887543
No 268
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=21.80 E-value=6.9e+02 Score=23.91 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=15.1
Q ss_pred HhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946 123 MRKDELESHLASLQDSRRHLMVQLEGLM 150 (165)
Q Consensus 123 QhK~rLE~RM~iLedhnRQLe~QLerLr 150 (165)
.....++++...+.+.=.+|+.+|+.++
T Consensus 605 ~~~~~~~~~l~~~~~~w~~l~~~~~~~~ 632 (638)
T PRK10636 605 QQQASAKSGLEECEMAWLEAQEQLEQML 632 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4444455555555555555666666655
No 269
>KOG4001|consensus
Probab=21.60 E-value=1.7e+02 Score=25.78 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=28.5
Q ss_pred HhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 123 MRKDELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 123 QhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
+-|.+++.+...|++.++.|+-+...+..-+.+
T Consensus 185 ~ek~~~~~~~k~le~~k~~Le~~ia~~k~K~e~ 217 (259)
T KOG4001|consen 185 NEKTRATTEWKVLEDKKKELELKIAQLKKKLET 217 (259)
T ss_pred hhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 679999999999999999999998888766553
No 270
>PF07407 Seadorna_VP6: Seadornavirus VP6 protein; InterPro: IPR009982 This family consists of several VP6 proteins from the Banna virus as well as a related protein VP5 from the Kadipiro virus. Members of this family are typically of around 420 residues in length. The function of this family is unknown.
Probab=21.20 E-value=4.3e+02 Score=24.84 Aligned_cols=52 Identities=17% Similarity=0.263 Sum_probs=0.0
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 78 SQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 78 a~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
..|..||..|.+|++.||.+-+ .| |+..||-| +..+|.+.|. +.+.+-+.++
T Consensus 35 ~aLr~EN~~LKkEN~~Lk~eVe-------------rL--E~e~l~s~---V~E~vet~dv-------~~d~i~Kimn 86 (420)
T PF07407_consen 35 FALRMENHSLKKENNDLKIEVE-------------RL--ENEMLRSH---VCEDVETNDV-------IYDKIVKIMN 86 (420)
T ss_pred hhHHHHhHHHHHHHHHHHHHHH-------------HH--HHHhhhhh---hhhHHHHHHH-------HHHHHHHHHH
No 271
>PF15458 NTR2: Nineteen complex-related protein 2
Probab=21.17 E-value=3.4e+02 Score=23.27 Aligned_cols=39 Identities=28% Similarity=0.409 Sum_probs=20.9
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 116 SELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 116 aEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
.-+..|...|..+..+|..|+.-..+|..+-..|..+|+
T Consensus 215 ~~l~~le~~~~~~~~~l~~l~~E~~~I~~re~elq~~l~ 253 (254)
T PF15458_consen 215 ESLSSLEDSKSQLQQQLESLEKEKEEIEEREKELQELLK 253 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444555555555555555555555555555555554
No 272
>PF06428 Sec2p: GDP/GTP exchange factor Sec2p; InterPro: IPR009449 In Saccharomyces cerevisiae, Sec2p is a GDP/GTP exchange factor for Sec4p, which is required for vesicular transport at the post-Golgi stage of yeast secretion []. It catalyzes the dissociation of GDP from SEC4 and also potently promoting binding of GTP. Activation of SEC4 by SEC2 is needed for the directed transport of vesicles to sites of exocytosis. Binds the Rab GTPase YPT32, but does not have exhange activity on YPT32 [, , ].; PDB: 2EQB_C 2E7S_K 2OCY_A.
Probab=21.13 E-value=72 Score=24.14 Aligned_cols=38 Identities=18% Similarity=0.273 Sum_probs=25.0
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHH
Q psy4946 73 QRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELR 119 (165)
Q Consensus 73 ~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEar 119 (165)
.+..-..+|.+...|..|++.|=..=-. ....||+.+|
T Consensus 6 e~~~r~~ae~~~~~ie~ElEeLTasLFe---------EAN~MVa~ar 43 (100)
T PF06428_consen 6 ERERREEAEQEKEQIESELEELTASLFE---------EANKMVADAR 43 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHH
Confidence 3445567888888888888888753311 1236777777
No 273
>PF06548 Kinesin-related: Kinesin-related; InterPro: IPR010544 This entry represents a domain within kinesin-related proteins from higher plants. Many proteins containing this domain also contain the IPR001752 from INTERPRO domain. Kinesins are ATP-driven microtubule motor proteins that produce directed force []. Some family members are associated with the phragmoplast, a structure composed mainly of microtubules that executes cytokinesis in higher plants [].
Probab=21.06 E-value=5.5e+02 Score=24.86 Aligned_cols=64 Identities=27% Similarity=0.368 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy4946 83 KNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGL 149 (165)
Q Consensus 83 eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerL 149 (165)
+-|.|+.-|.-.|.--..++.-..++---..|.||+-.||--+ |..+..|-+.|+-|..||...
T Consensus 359 ~Hr~i~egI~dVKkaAakAg~kG~~~rF~~slaaEiSalr~er---EkEr~~l~~eNk~L~~QLrDT 422 (488)
T PF06548_consen 359 RHRRIMEGIEDVKKAAAKAGVKGAESRFINSLAAEISALRAER---EKERRFLKDENKGLQIQLRDT 422 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhHHHHHHHHhH
Confidence 3444555555554432222211111112347999999998654 667889999999999998643
No 274
>cd04779 HTH_MerR-like_sg4 Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 4). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=21.03 E-value=4e+02 Score=20.73 Aligned_cols=30 Identities=7% Similarity=0.042 Sum_probs=16.9
Q ss_pred HHHHhHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy4946 120 ALRMRKDELESHLASLQDSRRHLMVQLEGL 149 (165)
Q Consensus 120 lLRQhK~rLE~RM~iLedhnRQLe~QLerL 149 (165)
.+.+....|+.++..|+...++|..-+..|
T Consensus 78 ~~~~~~~~l~~~i~~Le~~l~~L~~~~~~l 107 (134)
T cd04779 78 EVAQEVQLVCDQIDGLEHRLKQLKPIASQT 107 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555566666666666555555544444
No 275
>PF05837 CENP-H: Centromere protein H (CENP-H); InterPro: IPR008426 Chromosome segregation in eukaryotes requires the kinetochore, a multi-protein structure that assembles on centromeric DNA, and which acts to link chromosomes to spindle microtubules. Kinetochore structure and composition is highly conserved among vertebrates. The inner kinetochore is essential for kinetochore assembly, and is involved in chromosome segregation via regulation of the spindle. Inner kinetochore components include the multi-subunit CENP-H/I complex, which may function, in part, in directing centromere protein A (CENP-A) deposition to centromeres, where CENP-A is a centromere-specific histone H3 variant required for the organisation of centromeric chromatin during interphase. The CENP-H/I complex contains three functional classes of proteins [, ]: CENP-H class (includes CENP-H, -I, -K, -L) CENP-M class (includes CENP-M) CENP-O class (includes CENP-O, -P, -Q, -R, -50) CENP-H is required for the localisation of CENP-C, but not CENP-A, to the centromere. However, it may be involved in the incorporation of newly synthesised CENP-A into centromeres via its interaction with the CENP-A/CENP-HI complex. CENP-H contains a coiled-coil structure and a nuclear localisation signal. CENP-H is specifically and constitutively localised in kinetochores throughout the cell cycle, and may play a role in kinetochore organisation and function throughout the cell cycle []. Studies show that CENP-H may be associated with certain human cancers [, ]. This entry also includes Kinetochore protein Fta3 which is a subunit of the Sim4 complex. This complex is required for loading the DASH complex onto the kinetochore via interaction with dad1. Fta2, Fta3 and Fta4 associate with the central core and inner repeat region of the centromere [].; GO: 0043515 kinetochore binding, 0007059 chromosome segregation, 0051301 cell division, 0000777 condensed chromosome kinetochore, 0005634 nucleus
Probab=21.00 E-value=3.6e+02 Score=20.08 Aligned_cols=20 Identities=30% Similarity=0.584 Sum_probs=10.8
Q ss_pred HhhhhHHHHHHHHHHHHHHh
Q psy4946 80 LESKNREIMREIARLRRQQE 99 (165)
Q Consensus 80 LE~eNR~l~~EieRLr~q~e 99 (165)
+-..|+++..|+..|..+..
T Consensus 29 l~~~n~el~~el~~l~~~~~ 48 (106)
T PF05837_consen 29 LKRRNQELAQELLELAEKQK 48 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33445556666666655543
No 276
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=20.93 E-value=4.4e+02 Score=21.05 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=15.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLRRQ 97 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q 97 (165)
+.-++.|..++-.|++|++.|+.+
T Consensus 72 k~~~~~lr~~~e~L~~eie~l~~~ 95 (177)
T PF07798_consen 72 KSEFAELRSENEKLQREIEKLRQE 95 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566667777777777777764
No 277
>PRK14872 rod shape-determining protein MreC; Provisional
Probab=20.76 E-value=1.7e+02 Score=26.73 Aligned_cols=21 Identities=29% Similarity=0.249 Sum_probs=15.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHH
Q psy4946 78 SQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 78 a~LE~eNR~l~~EieRLr~q~ 98 (165)
..|.+||..|.+|..+|+.+-
T Consensus 60 ~~L~~EN~~Lk~Ena~L~~~l 80 (337)
T PRK14872 60 LVLETENFLLKERIALLEERL 80 (337)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 578888888888888776543
No 278
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=20.69 E-value=2.9e+02 Score=20.41 Aligned_cols=35 Identities=23% Similarity=0.221 Sum_probs=25.7
Q ss_pred HHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 121 LRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 121 LRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
|.+....|.+.+..|+.+..+|...+..+...++.
T Consensus 4 l~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~ 38 (126)
T TIGR00293 4 LAAELQILQQQVESLQAQIAALRALIAELETAIET 38 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677777888888888888888887777653
No 279
>TIGR02231 conserved hypothetical protein. This family consists of proteins over 500 amino acids long in Caenorhabditis elegans and several bacteria (Pseudomonas aeruginosa, Nostoc sp. PCC 7120, Leptospira interrogans, etc.). The function is unknown.
Probab=20.67 E-value=6.8e+02 Score=23.17 Aligned_cols=80 Identities=19% Similarity=0.136 Sum_probs=48.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh--------c--ccCCC--CCCChhHHHHHHHHHHhHhHHHHHHHHHHHh
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRRQQELE--------G--VCASG--FEDNPALMSELRALRMRKDELESHLASLQDS 138 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~--------~--~~~~~--~~~~~eLlaEarlLRQhK~rLE~RM~iLedh 138 (165)
.+++.-++.++++..-+...+.-|..-.... . ..+.. ..-...+-.+..-|+..+..|+.+...|++.
T Consensus 81 ~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (525)
T TIGR02231 81 RELEAELRDLEDRGDALKALAKFLEDIREGLTEPIKDSAKRNEPDLKEWFQAFDFNGSEIERLLTEDREAERRIRELEKQ 160 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777776666543211 0 00110 0112234456666777777888888888888
Q ss_pred HHHHHHHHHHHH
Q psy4946 139 RRHLMVQLEGLM 150 (165)
Q Consensus 139 nRQLe~QLerLr 150 (165)
-..|+.+|..|-
T Consensus 161 l~~l~~~l~~l~ 172 (525)
T TIGR02231 161 LSELQNELNALL 172 (525)
T ss_pred HHHHHHHHHhhc
Confidence 888888776664
No 280
>KOG2751|consensus
Probab=20.64 E-value=3.8e+02 Score=25.63 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=17.2
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHH
Q psy4946 113 ALMSELRALRMRKDELESHLASLQ 136 (165)
Q Consensus 113 eLlaEarlLRQhK~rLE~RM~iLe 136 (165)
+|-.++.-++.+|-||++.|-...
T Consensus 208 ~l~~~l~e~~~~~~~~~e~~~~~~ 231 (447)
T KOG2751|consen 208 ELDHQLKELEFKAERLNEEEDQYW 231 (447)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677889999988886543
No 281
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=20.62 E-value=2.3e+02 Score=20.53 Aligned_cols=24 Identities=21% Similarity=0.331 Sum_probs=13.0
Q ss_pred HHHHhHhHHHHHHHHHHHhHHHHH
Q psy4946 120 ALRMRKDELESHLASLQDSRRHLM 143 (165)
Q Consensus 120 lLRQhK~rLE~RM~iLedhnRQLe 143 (165)
+|.+++..|+++...|+...+.|.
T Consensus 75 ~l~~~~~~l~~~i~~l~~~~~~l~ 98 (102)
T cd04775 75 ILEERLQSLNREIQRLRQQQQVLA 98 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566665555555554443
No 282
>cd04789 HTH_Cfa Helix-Turn-Helix DNA binding domain of the Cfa transcription regulator. Putative helix-turn-helix (HTH) MerR-like transcription regulator; the N-terminal domain of Cfa, a cyclopropane fatty acid synthase and other related methyltransferases. Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.
Probab=20.53 E-value=2.1e+02 Score=20.82 Aligned_cols=25 Identities=28% Similarity=0.275 Sum_probs=17.9
Q ss_pred HHHHHhHhHHHHHHHHHHHhHHHHH
Q psy4946 119 RALRMRKDELESHLASLQDSRRHLM 143 (165)
Q Consensus 119 rlLRQhK~rLE~RM~iLedhnRQLe 143 (165)
.+|.++..+||+++..|+...+.|.
T Consensus 74 ~~l~~~~~~l~~~i~~l~~~~~~l~ 98 (102)
T cd04789 74 SLLLERLSSLAEQIARKQQARDLLA 98 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566788888888877777766554
No 283
>PF06133 DUF964: Protein of unknown function (DUF964); InterPro: IPR010368 This entry consists of several relatively short bacterial and archaeal hypothetical sequences. It also includes YlbF and YmcA proteins which are involved in the formation of biofilms []. YlbF regulates sporulation prior to stage II, positively controlling the competence regulator ComK at a post-transcriptional level. It may also modulate the translation, stability or activity of ComS and may work together with YmcA to regulate community development [].; PDB: 2IAZ_C 2OEE_A 2OEQ_D 2PIH_A.
Probab=20.48 E-value=3.3e+02 Score=19.39 Aligned_cols=13 Identities=15% Similarity=0.570 Sum_probs=5.6
Q ss_pred hHHHHHHHHHHHH
Q psy4946 84 NREIMREIARLRR 96 (165)
Q Consensus 84 NR~l~~EieRLr~ 96 (165)
-+.+..+|+.++.
T Consensus 35 ~~~l~~~f~~~q~ 47 (108)
T PF06133_consen 35 AQKLIEEFQKLQQ 47 (108)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 284
>PRK13752 putative transcriptional regulator MerR; Provisional
Probab=20.35 E-value=2.4e+02 Score=22.11 Aligned_cols=29 Identities=10% Similarity=0.080 Sum_probs=22.0
Q ss_pred HHHHHhHhHHHHHHHHHHHhHHHHHHHHH
Q psy4946 119 RALRMRKDELESHLASLQDSRRHLMVQLE 147 (165)
Q Consensus 119 rlLRQhK~rLE~RM~iLedhnRQLe~QLe 147 (165)
.+|.++..+||+++..|+..+..|..-+.
T Consensus 87 ~ll~~k~~~l~~~i~~L~~~~~~L~~~~~ 115 (144)
T PRK13752 87 SLAEHKLKDVREKMADLARMEAVLSELVC 115 (144)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778889999999888887777665443
No 285
>TIGR02047 CadR-PbrR Cd(II)/Pb(II)-responsive transcriptional regulator. This model represents the cadmium(II) and/or lead(II) responsive transcriptional activator of the proteobacterial metal efflux system. This protein is a member of the MerR family of transcriptional activators (pfam00376) and contains a distinctive pattern of cysteine residues in its metal binding loop, Cys-X(6-9)-Cys, as well as a conserved and critical cysteine at the N-terminal end of the dimerization helix.
Probab=20.35 E-value=2.1e+02 Score=21.66 Aligned_cols=26 Identities=15% Similarity=0.149 Sum_probs=19.1
Q ss_pred HHHHHhHhHHHHHHHHHHHhHHHHHH
Q psy4946 119 RALRMRKDELESHLASLQDSRRHLMV 144 (165)
Q Consensus 119 rlLRQhK~rLE~RM~iLedhnRQLe~ 144 (165)
.+|.++...|++++..|+.....|..
T Consensus 82 ~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (127)
T TIGR02047 82 ALLDEHISHVRARIIKLQALIEQLVD 107 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888888888877776666553
No 286
>KOG4286|consensus
Probab=20.33 E-value=5.8e+02 Score=26.55 Aligned_cols=110 Identities=17% Similarity=0.250 Sum_probs=62.6
Q ss_pred CCCCchhHHHHHHHHHhhhhcccCCCCCCCCcccccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCCh
Q psy4946 33 SRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNP 112 (165)
Q Consensus 33 ~~~DeEH~LIarY~~~L~~~~~~~~~~p~~~~~~~d~~~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~ 112 (165)
...++-|.-|.+||.+|+.-...+...-....+.-++..++.-+|.++= +.|..+-+ +.++. .-.
T Consensus 709 ~~~t~t~s~~~~~asRla~me~qn~S~~~dsgs~~~s~~~~q~lI~~~~----------~qL~rd~~---~~q~~--s~~ 773 (966)
T KOG4286|consen 709 LSHTDTHSRIEHYASRLAEMENQNGSYLNDSGSPNESIDDEQLLIQHYC----------QQLNQDSP---LSQPR--SPA 773 (966)
T ss_pred CcccchHHHHHHHHHHHHHHHHccccccCCCCCccccchhHHHHHHHHH----------HHhccccc---ccccc--ChH
Confidence 3468899999999999976533222111111222233334444444321 11222211 11111 111
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCC
Q psy4946 113 ALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQGT 159 (165)
Q Consensus 113 eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~~~~ 159 (165)
+++.. +-++-+++||--.-.+|+.++-+-+...+++.-=..+++.
T Consensus 774 ~ilQf--~~~e~r~ELe~I~a~le~e~r~lq~e~~qlk~Qhe~rg~A 818 (966)
T KOG4286|consen 774 QILQS--LESEERGELERILADLEEENRNLQAEYDRLKQQHEHKGLA 818 (966)
T ss_pred HHHHH--HHHHHhhHHHHHHHHHHHhhhhhhcCCCcchhhhhcccCC
Confidence 23322 2258889999999999999999999999988877766653
No 287
>PRK11239 hypothetical protein; Provisional
Probab=20.29 E-value=1.9e+02 Score=24.99 Aligned_cols=30 Identities=20% Similarity=0.329 Sum_probs=23.6
Q ss_pred hHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4946 124 RKDELESHLASLQDSRRHLMVQLEGLMRLL 153 (165)
Q Consensus 124 hK~rLE~RM~iLedhnRQLe~QLerLr~LL 153 (165)
+...||+|...|+..-.+|..+|+.|+..|
T Consensus 184 ~~~~Le~rv~~Le~eva~L~~~l~~l~~~~ 213 (215)
T PRK11239 184 VDGDLQARVEALEIEVAELKQRLDSLLAHL 213 (215)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 346688888888888888888888887654
No 288
>PRK10869 recombination and repair protein; Provisional
Probab=20.28 E-value=7.2e+02 Score=23.65 Aligned_cols=60 Identities=13% Similarity=0.017 Sum_probs=38.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESH 131 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~R 131 (165)
..+.-+.+|....++..++++.|+.|-+.-....+....+.+|-.|.+.|.....-.+.=
T Consensus 168 ~~~~~l~~l~~~~~~~~~~~d~l~fql~Ei~~~~l~~gE~eeL~~e~~~L~n~e~i~~~~ 227 (553)
T PRK10869 168 QSCRDLAQHQQQSQERAARKQLLQYQLKELNEFAPQPGEFEQIDEEYKRLANSGQLLTTS 227 (553)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666777888888888776544433344456777888888776665544443
No 289
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=20.21 E-value=4.1e+02 Score=23.49 Aligned_cols=45 Identities=22% Similarity=0.334 Sum_probs=40.4
Q ss_pred CCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4946 109 EDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLL 153 (165)
Q Consensus 109 ~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL 153 (165)
..|..+..|.-.-|..-++||..+..|...-.+|..+.+..|+.+
T Consensus 186 ~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~~~Re~i 230 (258)
T PF15397_consen 186 LENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQDPREVI 230 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHh
Confidence 568889999999999999999999999999999999988766643
No 290
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=20.10 E-value=4.4e+02 Score=20.72 Aligned_cols=27 Identities=22% Similarity=0.462 Sum_probs=18.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~ 98 (165)
+.+.=|..|..+|..|..+++.+..+.
T Consensus 32 ~~E~EI~sL~~K~~~lE~eld~~~~~l 58 (143)
T PF12718_consen 32 QKEQEITSLQKKNQQLEEELDKLEEQL 58 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566777777777777777776644
No 291
>cd04775 HTH_Cfa-like Helix-Turn-Helix DNA binding domain of Cfa-like transcription regulators. Putative helix-turn-helix (HTH) MerR-like transcription regulators; the HTH domain of Cfa, a cyclopropane fatty acid synthase, and other related methyltransferases, as well as, the N-terminal domain of a conserved, uncharacterized ~172 a.a. protein. Based on sequence similarity of the N-terminal domain, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimil
Probab=20.06 E-value=2.2e+02 Score=20.64 Aligned_cols=30 Identities=30% Similarity=0.279 Sum_probs=20.1
Q ss_pred hHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4946 124 RKDELESHLASLQDSRRHLMVQLEGLMRLL 153 (165)
Q Consensus 124 hK~rLE~RM~iLedhnRQLe~QLerLr~LL 153 (165)
.+.-|+.+...|++.-..|...+..|..+|
T Consensus 72 ~~~~l~~~~~~l~~~i~~l~~~~~~l~~~l 101 (102)
T cd04775 72 VQAILEERLQSLNREIQRLRQQQQVLAAIL 101 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356667777777777777666666666665
No 292
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=20.01 E-value=4e+02 Score=20.27 Aligned_cols=11 Identities=27% Similarity=0.670 Sum_probs=4.9
Q ss_pred HHHHHHHHHHH
Q psy4946 88 MREIARLRRQQ 98 (165)
Q Consensus 88 ~~EieRLr~q~ 98 (165)
..+|..||.+.
T Consensus 58 ~~~L~~lr~e~ 68 (132)
T PF07926_consen 58 IKELQQLREEL 68 (132)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
Done!