Query psy4946
Match_columns 165
No_of_seqs 87 out of 110
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 21:56:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4946.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4946hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3a7p_A Autophagy protein 16; c 92.8 0.61 2.1E-05 37.0 8.5 74 70-152 63-136 (152)
2 3oja_B Anopheles plasmodium-re 90.5 2.9 0.0001 36.6 11.3 71 72-155 506-576 (597)
3 2dfs_A Myosin-5A; myosin-V, in 90.3 1.5 5.2E-05 43.1 10.2 32 123-154 1016-1047(1080)
4 1go4_E MAD1 (mitotic arrest de 88.0 4.2 0.00014 30.1 8.9 74 72-160 16-98 (100)
5 3a2a_A Voltage-gated hydrogen 87.0 1.6 5.3E-05 29.6 5.5 38 120-157 15-52 (58)
6 1dh3_A Transcription factor CR 85.5 0.91 3.1E-05 29.8 3.7 32 123-154 22-53 (55)
7 4dci_A Uncharacterized protein 85.1 9.3 0.00032 29.9 10.0 79 71-152 25-106 (150)
8 2dgc_A Protein (GCN4); basic d 84.9 1.2 4.2E-05 29.9 4.2 32 123-154 30-61 (63)
9 3m48_A General control protein 84.8 1.4 4.8E-05 26.9 4.0 30 126-155 3-32 (33)
10 3vmx_A Voltage-gated hydrogen 83.1 3.4 0.00012 27.1 5.6 38 120-157 8-45 (48)
11 2jee_A YIIU; FTSZ, septum, coi 82.6 11 0.00038 26.9 9.8 56 75-143 6-68 (81)
12 2oxj_A Hybrid alpha/beta pepti 82.4 2.6 8.9E-05 25.8 4.5 32 124-155 2-33 (34)
13 3a2a_A Voltage-gated hydrogen 82.3 2.3 7.9E-05 28.8 4.7 25 72-96 22-46 (58)
14 1uo4_A General control protein 82.1 2.1 7.3E-05 26.2 4.0 30 126-155 4-33 (34)
15 1kd8_A GABH AIV, GCN4 acid bas 81.1 2.4 8.3E-05 26.3 4.1 33 124-156 2-34 (36)
16 3c3f_A Alpha/beta peptide with 80.8 3.2 0.00011 25.4 4.5 32 124-155 2-33 (34)
17 1kd8_B GABH BLL, GCN4 acid bas 79.6 3.6 0.00012 25.5 4.5 33 124-156 2-34 (36)
18 3c3g_A Alpha/beta peptide with 79.5 3.8 0.00013 25.0 4.5 30 126-155 3-32 (33)
19 2bni_A General control protein 79.2 2.8 9.6E-05 25.7 3.9 32 124-155 2-33 (34)
20 3vmx_A Voltage-gated hydrogen 78.9 2.4 8.1E-05 27.8 3.7 24 73-96 16-39 (48)
21 3s4r_A Vimentin; alpha-helix, 78.7 11 0.00038 26.9 7.6 67 77-151 25-91 (93)
22 2dq0_A Seryl-tRNA synthetase; 78.5 5.5 0.00019 35.5 7.2 63 77-139 33-99 (455)
23 2dq3_A Seryl-tRNA synthetase; 77.9 5.5 0.00019 35.0 7.0 63 77-139 32-98 (425)
24 3cvf_A Homer-3, homer protein 76.0 2.1 7.2E-05 30.4 3.1 29 126-154 9-37 (79)
25 2hy6_A General control protein 75.3 5.7 0.0002 24.3 4.5 33 123-155 1-33 (34)
26 2dgc_A Protein (GCN4); basic d 75.3 3.4 0.00012 27.7 3.9 27 72-98 34-60 (63)
27 1ci6_A Transcription factor AT 74.0 7.4 0.00025 25.8 5.3 25 126-150 26-50 (63)
28 2pnv_A Small conductance calci 73.9 4.7 0.00016 25.6 4.0 32 113-147 9-40 (43)
29 2dfs_A Myosin-5A; myosin-V, in 72.6 6.8 0.00023 38.6 6.7 11 122-132 1004-1014(1080)
30 1ses_A Seryl-tRNA synthetase; 70.6 7.1 0.00024 34.3 5.8 60 77-136 30-91 (421)
31 2r2v_A GCN4 leucine zipper; co 70.3 9.8 0.00033 23.3 4.7 31 124-154 2-32 (34)
32 1uii_A Geminin; human, DNA rep 69.8 5.2 0.00018 28.8 3.9 51 43-99 27-77 (83)
33 3cve_A Homer protein homolog 1 69.4 7.7 0.00026 27.1 4.7 27 128-154 5-31 (72)
34 2eqb_B RAB guanine nucleotide 68.5 7.4 0.00025 28.7 4.6 67 72-148 9-94 (97)
35 2v66_B Nuclear distribution pr 68.4 8.8 0.0003 28.7 5.1 68 76-145 4-71 (111)
36 1gd2_E Transcription factor PA 68.3 6.9 0.00024 26.9 4.2 26 72-97 33-58 (70)
37 3q8t_A Beclin-1; autophagy, AT 67.4 31 0.0011 24.6 8.0 29 71-99 7-35 (96)
38 1t2k_D Cyclic-AMP-dependent tr 66.9 14 0.00046 24.1 5.3 29 125-153 24-52 (61)
39 3qne_A Seryl-tRNA synthetase, 66.8 17 0.00057 33.1 7.5 60 78-137 36-99 (485)
40 1nlw_A MAD protein, MAX dimeri 66.6 5.6 0.00019 27.6 3.5 26 74-99 46-71 (80)
41 3e98_A GAF domain of unknown f 66.1 6.5 0.00022 32.3 4.4 18 120-137 76-93 (252)
42 1nkp_B MAX protein, MYC proto- 66.0 7 0.00024 26.7 3.9 32 118-149 49-80 (83)
43 4etp_A Kinesin-like protein KA 65.7 21 0.0007 31.2 7.7 28 123-150 31-58 (403)
44 2wq1_A General control protein 65.5 14 0.00049 22.4 4.7 29 126-154 3-31 (33)
45 1p9i_A Cortexillin I/GCN4 hybr 65.0 6 0.0002 23.4 2.8 26 72-97 3-28 (31)
46 1nkp_A C-MYC, MYC proto-oncoge 64.8 13 0.00044 26.1 5.2 33 118-150 54-86 (88)
47 1hjb_A Ccaat/enhancer binding 63.9 14 0.00048 26.4 5.3 37 123-159 36-79 (87)
48 1dh3_A Transcription factor CR 63.4 7.8 0.00027 25.2 3.5 26 72-97 26-51 (55)
49 2fxo_A Myosin heavy chain, car 62.5 44 0.0015 24.6 10.4 26 74-99 33-58 (129)
50 3viq_B Mating-type switching p 62.0 8 0.00027 27.8 3.6 32 125-156 3-34 (85)
51 3he4_A Synzip6; heterodimeric 61.4 12 0.00042 24.7 4.1 32 65-96 14-45 (56)
52 1jnm_A Proto-oncogene C-JUN; B 61.4 12 0.00042 24.4 4.3 27 72-98 26-52 (62)
53 3gpv_A Transcriptional regulat 61.1 11 0.00036 28.3 4.4 40 118-157 97-136 (148)
54 1gu4_A CAAT/enhancer binding p 60.7 18 0.00062 25.2 5.3 33 122-154 35-67 (78)
55 1nkp_A C-MYC, MYC proto-oncoge 60.0 14 0.00049 25.8 4.7 26 74-99 51-76 (88)
56 2wt7_B Transcription factor MA 58.9 18 0.00061 26.1 5.1 54 35-99 19-72 (90)
57 1kd8_A GABH AIV, GCN4 acid bas 58.7 16 0.00056 22.5 4.1 26 72-97 5-30 (36)
58 2wt7_A Proto-oncogene protein 58.4 24 0.00081 23.2 5.3 27 126-152 26-52 (63)
59 1jnm_A Proto-oncogene C-JUN; B 57.7 25 0.00087 22.8 5.3 31 124-154 23-53 (62)
60 3m48_A General control protein 57.6 17 0.00056 22.1 3.9 24 73-96 5-28 (33)
61 1zxa_A CGMP-dependent protein 56.1 16 0.00056 25.1 4.3 30 71-100 21-50 (67)
62 1q08_A Zn(II)-responsive regul 55.5 34 0.0012 23.0 5.9 27 119-145 42-68 (99)
63 2jee_A YIIU; FTSZ, septum, coi 54.8 54 0.0018 23.2 7.6 52 71-135 23-74 (81)
64 2wt7_A Proto-oncogene protein 54.6 19 0.00065 23.6 4.3 27 72-98 27-53 (63)
65 3hnw_A Uncharacterized protein 53.3 70 0.0024 24.1 9.5 63 72-147 72-134 (138)
66 1ci6_A Transcription factor AT 53.1 43 0.0015 22.0 5.9 35 112-146 26-60 (63)
67 1i84_S Smooth muscle myosin he 52.7 86 0.0029 30.7 10.2 11 124-134 921-931 (1184)
68 2oqq_A Transcription factor HY 52.5 22 0.00076 22.6 4.1 26 71-96 13-38 (42)
69 1hlo_A Protein (transcription 51.8 10 0.00035 25.8 2.7 24 74-97 56-79 (80)
70 3oja_B Anopheles plasmodium-re 51.0 1.2E+02 0.0042 26.2 10.8 8 137-144 544-551 (597)
71 4h22_A Leucine-rich repeat fli 50.9 73 0.0025 23.6 8.9 63 78-153 5-67 (103)
72 1wt6_A Myotonin-protein kinase 50.7 15 0.00051 26.3 3.5 24 76-99 46-69 (81)
73 1q08_A Zn(II)-responsive regul 49.2 33 0.0011 23.1 5.0 30 125-154 41-70 (99)
74 3u06_A Protein claret segregat 48.8 65 0.0022 28.2 8.0 23 128-150 36-58 (412)
75 1nkp_B MAX protein, MYC proto- 48.3 18 0.0006 24.6 3.5 26 74-99 46-71 (83)
76 3o0z_A RHO-associated protein 47.5 1E+02 0.0036 24.4 10.7 25 72-96 52-76 (168)
77 2oqq_A Transcription factor HY 46.4 54 0.0018 20.8 5.6 28 114-141 8-35 (42)
78 1wle_A Seryl-tRNA synthetase; 46.3 51 0.0018 29.8 7.1 20 79-98 74-93 (501)
79 3q8t_A Beclin-1; autophagy, AT 46.3 76 0.0026 22.5 11.1 68 77-150 27-94 (96)
80 3o0z_A RHO-associated protein 45.5 1.1E+02 0.0039 24.2 10.1 21 79-99 14-37 (168)
81 3w03_C DNA repair protein XRCC 45.2 17 0.0006 29.2 3.5 23 77-99 154-176 (184)
82 1wle_A Seryl-tRNA synthetase; 45.2 1.5E+02 0.0053 26.6 10.1 65 76-149 85-149 (501)
83 1r8e_A Multidrug-efflux transp 45.1 42 0.0014 26.2 5.7 35 119-153 82-116 (278)
84 3qne_A Seryl-tRNA synthetase, 45.0 99 0.0034 28.0 8.8 23 125-147 80-102 (485)
85 3gp4_A Transcriptional regulat 44.7 43 0.0015 24.8 5.4 37 118-154 83-119 (142)
86 1dip_A Delta-sleep-inducing pe 44.7 29 0.001 24.6 4.2 29 70-98 17-45 (78)
87 2j5u_A MREC protein; bacterial 44.6 11 0.00038 30.9 2.3 17 141-157 47-63 (255)
88 2oxj_A Hybrid alpha/beta pepti 44.5 35 0.0012 20.8 3.9 24 73-96 6-29 (34)
89 1ik9_A DNA repair protein XRCC 44.3 1.1E+02 0.0036 24.7 8.1 18 79-96 136-153 (213)
90 2wq1_A General control protein 44.0 40 0.0014 20.4 4.1 25 72-96 4-28 (33)
91 2yy0_A C-MYC-binding protein; 43.8 44 0.0015 21.6 4.7 32 116-147 19-50 (53)
92 1l8d_A DNA double-strand break 43.1 81 0.0028 21.9 11.4 76 75-153 17-101 (112)
93 1gu4_A CAAT/enhancer binding p 42.9 34 0.0012 23.8 4.3 27 72-98 40-66 (78)
94 3q4f_C DNA repair protein XRCC 42.8 19 0.00065 29.3 3.4 22 77-98 163-184 (186)
95 3c3g_A Alpha/beta peptide with 40.6 45 0.0015 20.2 3.9 24 73-96 5-28 (33)
96 3i00_A HIP-I, huntingtin-inter 40.4 1.1E+02 0.0038 22.7 10.1 27 73-99 13-39 (120)
97 3mq9_A Bone marrow stromal ant 40.0 1.2E+02 0.004 25.8 8.1 72 82-155 397-468 (471)
98 1nlw_A MAD protein, MAX dimeri 39.9 39 0.0013 23.2 4.2 37 112-148 39-79 (80)
99 1ez3_A Syntaxin-1A; three heli 38.9 94 0.0032 21.7 6.3 24 77-100 14-37 (127)
100 3nmd_A CGMP dependent protein 38.5 39 0.0013 23.6 4.0 27 125-151 42-68 (72)
101 1gk7_A Vimentin; intermediate 37.8 15 0.0005 22.6 1.5 18 130-147 20-37 (39)
102 2wvr_A Geminin; DNA replicatio 37.8 31 0.0011 28.5 3.9 35 66-100 113-147 (209)
103 2hy6_A General control protein 37.4 58 0.002 19.8 4.1 25 72-96 5-29 (34)
104 1t2k_D Cyclic-AMP-dependent tr 37.0 82 0.0028 20.2 5.6 31 114-144 27-57 (61)
105 1wlq_A Geminin; coiled-coil; 2 36.3 33 0.0011 24.6 3.4 34 66-99 36-69 (83)
106 3mq7_A Bone marrow stromal ant 35.9 50 0.0017 25.2 4.5 17 115-131 91-107 (121)
107 2wg5_A General control protein 35.8 27 0.00092 25.2 3.0 29 130-158 7-35 (109)
108 2wt7_B Transcription factor MA 35.2 64 0.0022 23.2 4.8 28 125-153 44-71 (90)
109 4etp_A Kinesin-like protein KA 35.2 98 0.0034 26.9 7.0 40 112-151 6-45 (403)
110 3gp4_A Transcriptional regulat 35.2 1.1E+02 0.0038 22.5 6.4 25 128-152 79-103 (142)
111 3s4r_A Vimentin; alpha-helix, 35.2 37 0.0013 24.1 3.5 20 131-150 24-43 (93)
112 1zme_C Proline utilization tra 35.0 38 0.0013 21.4 3.3 20 135-154 49-68 (70)
113 1kd8_B GABH BLL, GCN4 acid bas 35.0 60 0.002 20.0 3.9 26 72-97 5-30 (36)
114 1ykh_B RNA polymerase II holoe 34.9 54 0.0019 24.5 4.6 29 70-98 87-115 (132)
115 4ath_A MITF, microphthalmia-as 34.8 1.2E+02 0.0041 21.5 6.3 38 115-152 41-78 (83)
116 2lf0_A Uncharacterized protein 34.6 38 0.0013 25.9 3.6 27 74-100 35-61 (123)
117 3bas_A Myosin heavy chain, str 34.5 1.1E+02 0.0039 21.1 10.0 42 113-154 46-87 (89)
118 3gpv_A Transcriptional regulat 34.3 1.2E+02 0.004 22.4 6.4 27 128-154 93-119 (148)
119 3lss_A Seryl-tRNA synthetase; 34.2 2.4E+02 0.0083 25.4 9.5 23 127-149 115-137 (484)
120 2j5u_A MREC protein; bacterial 34.2 51 0.0017 26.9 4.7 21 79-99 23-43 (255)
121 3he5_A Synzip1; heterodimeric 34.2 47 0.0016 21.3 3.5 24 76-99 4-27 (49)
122 1r8e_A Multidrug-efflux transp 33.4 67 0.0023 25.1 5.2 29 125-153 81-109 (278)
123 3u1c_A Tropomyosin alpha-1 cha 33.1 1.3E+02 0.0044 21.3 6.3 41 114-154 28-68 (101)
124 3u06_A Protein claret segregat 33.1 99 0.0034 27.1 6.7 39 111-149 5-43 (412)
125 1yke_B RNA polymerase II holoe 32.8 59 0.002 25.0 4.6 30 70-99 87-116 (151)
126 1c1g_A Tropomyosin; contractIl 32.3 1.5E+02 0.005 21.7 11.1 33 118-150 225-257 (284)
127 3he4_B Synzip5; heterodimeric 32.1 67 0.0023 20.3 3.9 25 71-95 6-30 (46)
128 1fxk_C Protein (prefoldin); ar 31.7 81 0.0028 22.6 5.0 38 117-154 2-39 (133)
129 2ve7_A Kinetochore protein HEC 31.4 1.2E+02 0.0041 25.5 6.7 27 129-155 184-210 (315)
130 2w83_C C-JUN-amino-terminal ki 31.3 1.4E+02 0.0047 21.1 6.9 26 113-138 48-73 (77)
131 1lj2_A NSP3-C, nonstructural R 31.3 40 0.0014 25.3 3.2 22 71-92 9-30 (110)
132 3na7_A HP0958; flagellar bioge 31.0 2E+02 0.0069 22.9 8.8 20 77-96 20-39 (256)
133 2ke4_A CDC42-interacting prote 30.9 64 0.0022 23.2 4.3 33 123-155 15-47 (98)
134 2zqm_A Prefoldin beta subunit 30.4 1.1E+02 0.0037 21.1 5.4 43 113-158 70-112 (117)
135 3cvf_A Homer-3, homer protein 30.1 1.4E+02 0.0049 20.9 6.1 21 77-97 15-35 (79)
136 2zvf_A Alanyl-tRNA synthetase; 29.8 41 0.0014 24.9 3.2 27 72-98 29-55 (171)
137 1gd2_E Transcription factor PA 29.6 1.3E+02 0.0045 20.4 7.3 28 127-154 40-67 (70)
138 3na7_A HP0958; flagellar bioge 29.5 2.2E+02 0.0074 22.8 10.8 39 113-151 94-132 (256)
139 3m9b_A Proteasome-associated A 29.4 51 0.0018 27.8 4.0 33 123-155 61-93 (251)
140 2p22_A Suppressor protein STP2 29.1 1.7E+02 0.0059 23.1 6.9 45 111-155 51-95 (174)
141 1s94_A S-syntaxin; three helix 29.1 1.8E+02 0.0062 21.8 7.8 67 75-154 43-109 (180)
142 3lss_A Seryl-tRNA synthetase; 29.0 1.5E+02 0.005 26.8 7.2 31 115-145 109-140 (484)
143 1go4_E MAD1 (mitotic arrest de 28.9 1.1E+02 0.0036 22.4 5.2 32 117-148 13-44 (100)
144 2v71_A Nuclear distribution pr 28.7 2.3E+02 0.0077 22.7 10.8 32 114-145 93-124 (189)
145 2wg5_A General control protein 28.7 63 0.0022 23.2 3.9 25 72-96 11-35 (109)
146 1dip_A Delta-sleep-inducing pe 28.5 46 0.0016 23.6 3.0 24 117-140 16-39 (78)
147 2ve7_A Kinetochore protein HEC 28.4 1.3E+02 0.0044 25.3 6.4 20 77-96 187-206 (315)
148 1q06_A Transcriptional regulat 28.3 91 0.0031 22.6 4.8 26 119-144 82-107 (135)
149 1t3j_A Mitofusin 1; coiled coi 28.2 1.7E+02 0.0059 21.2 7.8 45 74-135 46-90 (96)
150 1hjb_A Ccaat/enhancer binding 28.1 1.3E+02 0.0044 21.2 5.4 28 118-145 45-72 (87)
151 2v71_A Nuclear distribution pr 27.4 2.4E+02 0.0082 22.6 9.3 42 113-154 99-140 (189)
152 1urf_A Protein kinase C-like 1 27.3 1.7E+02 0.0057 20.8 6.9 13 107-119 37-49 (81)
153 1wt6_A Myotonin-protein kinase 26.8 1.7E+02 0.0059 20.7 6.6 26 130-155 45-70 (81)
154 3j21_W 50S ribosomal protein L 25.4 1.6E+02 0.0054 19.9 5.3 51 72-130 5-56 (72)
155 1q06_A Transcriptional regulat 25.1 1.4E+02 0.0047 21.6 5.3 33 124-156 80-112 (135)
156 2ve7_C Kinetochore protein NUF 24.9 50 0.0017 27.1 3.1 36 122-157 147-182 (250)
157 2rbd_A BH2358 protein; putativ 24.4 1.2E+02 0.0041 22.6 5.0 30 133-162 50-79 (171)
158 3m9b_A Proteasome-associated A 24.2 1.3E+02 0.0045 25.2 5.6 27 71-97 57-83 (251)
159 1zxa_A CGMP-dependent protein 24.0 1.1E+02 0.0039 20.8 4.3 28 127-154 29-56 (67)
160 3ra3_B P2F; coiled coil domain 23.3 59 0.002 18.7 2.3 21 77-97 2-22 (28)
161 1r8d_A Transcription activator 22.8 1.9E+02 0.0065 19.9 5.8 24 120-143 79-102 (109)
162 3hhm_B NISH2 P85alpha; PI3KCA, 22.8 3.1E+02 0.01 23.7 7.9 36 114-149 210-245 (373)
163 3hh0_A Transcriptional regulat 22.3 79 0.0027 23.5 3.5 28 118-145 82-109 (146)
164 3cve_A Homer protein homolog 1 22.2 2E+02 0.0067 19.8 5.4 23 77-99 9-31 (72)
165 1fmh_A General control protein 22.2 1.3E+02 0.0045 17.8 4.1 25 72-96 5-29 (33)
166 2zvf_A Alanyl-tRNA synthetase; 21.4 71 0.0024 23.6 3.1 29 126-154 28-56 (171)
167 2zhg_A Redox-sensitive transcr 21.1 1.1E+02 0.0037 22.9 4.1 27 118-144 92-118 (154)
168 2vz4_A Tipal, HTH-type transcr 20.6 1.3E+02 0.0046 20.7 4.3 24 120-143 78-101 (108)
169 3swk_A Vimentin; cytoskeleton, 20.1 2.2E+02 0.0076 19.6 6.1 69 72-153 4-79 (86)
No 1
>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}
Probab=92.76 E-value=0.61 Score=36.98 Aligned_cols=74 Identities=18% Similarity=0.271 Sum_probs=59.9
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy4946 70 SRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGL 149 (165)
Q Consensus 70 ~~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerL 149 (165)
.+.+...|..|+.+...+..+|..|+..-.... .....|-.|.-.|+-+-.-+|.++..|++-|++| ++|+
T Consensus 63 ~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~------K~~e~l~DEl~aLqlq~n~lE~kl~kLq~EN~~L---V~RW 133 (152)
T 3a7p_A 63 DDALLNTLAILQKELKSKEQEIRRLKEVIALKN------KNTERLNAALISGTIENNVLQQKLSDLKKEHSQL---VARW 133 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 366788999999999999999999987543222 1345688999999999999999999999999988 5566
Q ss_pred HHH
Q psy4946 150 MRL 152 (165)
Q Consensus 150 r~L 152 (165)
|+-
T Consensus 134 M~r 136 (152)
T 3a7p_A 134 LKK 136 (152)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
No 2
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=90.55 E-value=2.9 Score=36.56 Aligned_cols=71 Identities=17% Similarity=0.175 Sum_probs=45.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
.+++.+.+++++...+.+++++++.+-+ +..++++-|++.+.+||.+....++...+|..+++.+++
T Consensus 506 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~ 572 (597)
T 3oja_B 506 NLNKVFTHLKERQAFKLRETQARRTEAD-------------AKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQ 572 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhh-------------hhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3344555555555555555555554332 456777777788888888887777777777777777666
Q ss_pred HHhh
Q psy4946 152 LLKT 155 (165)
Q Consensus 152 LL~~ 155 (165)
-|++
T Consensus 573 ~~~~ 576 (597)
T 3oja_B 573 KVKQ 576 (597)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5553
No 3
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=90.31 E-value=1.5 Score=43.08 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=24.0
Q ss_pred HhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 123 MRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 123 QhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
+.+++|+.++..|++.|..|+.|+..|...+.
T Consensus 1016 ~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~ 1047 (1080)
T 2dfs_A 1016 KYKHETEQLVSELKEQNTLLKTEKEELNRRIH 1047 (1080)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567788888888888888888888875444
No 4
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=88.05 E-value=4.2 Score=30.06 Aligned_cols=74 Identities=22% Similarity=0.232 Sum_probs=50.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcc----cCC-----CCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGV----CAS-----GFEDNPALMSELRALRMRKDELESHLASLQDSRRHL 142 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~----~~~-----~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQL 142 (165)
.++.-|..||-||-.|.++++.|..+-+.... .+. +-..||.-.| ..++|..+| +|
T Consensus 16 ~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a----~~~~~~~~e-----------~L 80 (100)
T 1go4_E 16 TLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVA----RQRLREDHS-----------QL 80 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHH----HHHHHHHHH-----------HH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHH----HHHHHHHHH-----------HH
Confidence 66889999999999999999999987775221 121 2246777664 334454444 37
Q ss_pred HHHHHHHHHHHhhcCCCC
Q psy4946 143 MVQLEGLMRLLKTHQGTS 160 (165)
Q Consensus 143 e~QLerLr~LL~~~~~~s 160 (165)
....++|+..+..-..|.
T Consensus 81 q~E~erLr~~v~~lEeg~ 98 (100)
T 1go4_E 81 QAECERLRGLLRAMERGG 98 (100)
T ss_dssp HHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHHhccC
Confidence 788889998888665543
No 5
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=87.03 E-value=1.6 Score=29.65 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=34.8
Q ss_pred HHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcC
Q psy4946 120 ALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQ 157 (165)
Q Consensus 120 lLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~~ 157 (165)
-|+|-+.-|=++.+-|+.++-+-+...+||.+||+++.
T Consensus 15 kLKq~n~~L~~kv~~Le~~c~e~eQEieRL~~LLkqHg 52 (58)
T 3a2a_A 15 RLKQMNVQLAAKIQHLEFSCSEKEQEIERLNKLLRQHG 52 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 57789999999999999999999999999999999875
No 6
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=85.52 E-value=0.91 Score=29.77 Aligned_cols=32 Identities=25% Similarity=0.384 Sum_probs=28.0
Q ss_pred HhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 123 MRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 123 QhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
+|-+.||.+...|+..|..|..|+..|.+.+.
T Consensus 22 ~~~~~LE~~v~~L~~eN~~L~~~~~~L~~~~~ 53 (55)
T 1dh3_A 22 EYVKSLENRVAVLENQNKTLIEELKALKDLYS 53 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34589999999999999999999999987654
No 7
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=85.08 E-value=9.3 Score=29.88 Aligned_cols=79 Identities=13% Similarity=0.195 Sum_probs=54.2
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhh---cccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHH
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRRQQELE---GVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLE 147 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~---~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLe 147 (165)
.-.++++++|++.-..+-.|+++|..+--.. .......+-+|.+.+-+..+|+ .+++..+-+.+..++|..||+
T Consensus 25 ~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~p~~~~qi~~iq~---q~~~ek~~r~e~k~~l~~ql~ 101 (150)
T 4dci_A 25 TWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLDPRVQEQVANIQQ---QVAGKRSELEEQKRNLLQQQA 101 (150)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCChhHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 4557788888888888888888888754221 1111111234666655555544 578888899999999999999
Q ss_pred HHHHH
Q psy4946 148 GLMRL 152 (165)
Q Consensus 148 rLr~L 152 (165)
.+..|
T Consensus 102 qv~~L 106 (150)
T 4dci_A 102 QVREL 106 (150)
T ss_dssp HHHHS
T ss_pred HHhcC
Confidence 88775
No 8
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=84.90 E-value=1.2 Score=29.88 Aligned_cols=32 Identities=25% Similarity=0.366 Sum_probs=26.9
Q ss_pred HhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 123 MRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 123 QhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
+|-.+||.+...|+..|..|..++..|+++|.
T Consensus 30 ~~~~~Le~~v~~L~~eN~~L~~ev~~Lr~~l~ 61 (63)
T 2dgc_A 30 QRMKQLEDKVEELLSKNYHLENEVARLKKLVG 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34578999999999999999999999998875
No 9
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=84.79 E-value=1.4 Score=26.92 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 126 DELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 126 ~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
..||.+.-.|-..|..|+.+..||+.||.+
T Consensus 3 ~QLE~kVEeLl~~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 3 AQLEAKVEELLSKNWNLENEVARLKKLVGE 32 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 468999999999999999999999999975
No 10
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=83.13 E-value=3.4 Score=27.06 Aligned_cols=38 Identities=24% Similarity=0.253 Sum_probs=33.9
Q ss_pred HHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcC
Q psy4946 120 ALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQ 157 (165)
Q Consensus 120 lLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~~ 157 (165)
-|++--+.|=+|...||...-+++...+||.+||++.+
T Consensus 8 kLKe~n~~L~~kv~~Le~~c~~~eQEieRL~~LLkqHg 45 (48)
T 3vmx_A 8 RLKQINIQLATKIQHLEFSCSEKEQEIERLNKLLKQNG 45 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcC
Confidence 35677788999999999999999999999999999875
No 11
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=82.62 E-value=11 Score=26.88 Aligned_cols=56 Identities=23% Similarity=0.424 Sum_probs=32.1
Q ss_pred HHHHHHhhhhHHHHH-------HHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHH
Q psy4946 75 ELVSQLESKNREIMR-------EIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLM 143 (165)
Q Consensus 75 ~lIa~LE~eNR~l~~-------EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe 143 (165)
+++.+||.|-..... ||+.||.+.. .|-.|...+|..+..|+..-..|.+-...-.
T Consensus 6 ElleqLE~KIq~avdtI~lLqmEieELKekN~-------------~L~~e~~e~~~~~~~L~~en~qLk~E~~~wq 68 (81)
T 2jee_A 6 EVFEKLEAKVQQAIDTITLLQMEIEELKEKNN-------------SLSQEVQNAQHQREELERENNHLKEQQNGWQ 68 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 356677777655444 6777776543 4556666666666555555555554444433
No 12
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=82.43 E-value=2.6 Score=25.85 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=27.6
Q ss_pred hHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 124 RKDELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 124 hK~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
|-..||.+.-.|=..|..|+.+..||+.||..
T Consensus 2 RMnQLE~kVEeLl~~n~~Le~eV~rLk~ll~~ 33 (34)
T 2oxj_A 2 RMXQLEXKVXELLXKNXHLEXEVXRLKXLVXE 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred cHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 45678888888888999999999999999863
No 13
>3a2a_A Voltage-gated hydrogen channel 1; voltage-gated proton channel, alternative splicing, coiled C transport, ionic channel, membrane, transmembrane; 2.00A {Homo sapiens}
Probab=82.34 E-value=2.3 Score=28.81 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=21.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~ 96 (165)
.+-.=|.+||.-+.+.-+||+||..
T Consensus 22 ~L~~kv~~Le~~c~e~eQEieRL~~ 46 (58)
T 3a2a_A 22 QLAAKIQHLEFSCSEKEQEIERLNK 46 (58)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455688999999999999999985
No 14
>1uo4_A General control protein GCN4; four helix bundle, cavity, iodobenzene; 1.70A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1uo3_A 1unt_A 1uo5_A 1unu_A 1unv_A 1uo1_A 2ccf_A 2cce_A 1unx_A 1unw_A 1w5j_A* 1w5k_A* 1u9f_A* 3f86_A* 3f87_A* 3hez_A* 3c3f_A*
Probab=82.11 E-value=2.1 Score=26.24 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 126 DELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 126 ~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
..||.+.-.|-..|..|+.+..||+.||.+
T Consensus 4 ~QLEdKVEeLl~~n~~Le~EV~RLk~LL~~ 33 (34)
T 1uo4_A 4 KQIEDKGEEILSKLYHIENELARIKKLLGE 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHHcc
Confidence 568888888888999999999999999975
No 15
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=81.07 E-value=2.4 Score=26.27 Aligned_cols=33 Identities=15% Similarity=0.194 Sum_probs=28.9
Q ss_pred hHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Q psy4946 124 RKDELESHLASLQDSRRHLMVQLEGLMRLLKTH 156 (165)
Q Consensus 124 hK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~ 156 (165)
|-..||.+.-.|...+..|+.+..||+.+|...
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~~ 34 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENAEC 34 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhccc
Confidence 456799999999999999999999999999753
No 16
>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-alpha-beta) backbone...; helix bundle, foldamer, unknown function, de novo protein; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} SCOP: h.1.3.1
Probab=80.82 E-value=3.2 Score=25.43 Aligned_cols=32 Identities=19% Similarity=0.294 Sum_probs=26.5
Q ss_pred hHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 124 RKDELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 124 hK~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
|-..||.+.-.|-..|..|+.+..||+.||..
T Consensus 2 RMnQLEdKVEeLl~~~~~Le~EV~RLk~ll~~ 33 (34)
T 3c3f_A 2 RMXQIEXKLEXILSXLYHXENEXARIXKLLXE 33 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhc
Confidence 45678888888888899999999999999863
No 17
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=79.63 E-value=3.6 Score=25.53 Aligned_cols=33 Identities=15% Similarity=0.219 Sum_probs=28.2
Q ss_pred hHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Q psy4946 124 RKDELESHLASLQDSRRHLMVQLEGLMRLLKTH 156 (165)
Q Consensus 124 hK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~ 156 (165)
|-..||.+.-.|-..+-.|+.+..||+.+|...
T Consensus 2 RMnQLE~KVEeLl~~~~~Le~eV~RLk~ll~~~ 34 (36)
T 1kd8_B 2 KVKQLKAKVEELKSKLWHLKNKVARLKKKNAEC 34 (36)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhccc
Confidence 456788888888889999999999999999753
No 18
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=79.50 E-value=3.8 Score=24.96 Aligned_cols=30 Identities=20% Similarity=0.293 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 126 DELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 126 ~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
..||.+.-.|-..|..|+.+..||+.||..
T Consensus 3 nQLEdKvEeLl~~~~~Le~EV~RLk~lL~~ 32 (33)
T 3c3g_A 3 KXIEXKLXEIXSKXYHXENXLARIKXLLXE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHcc
Confidence 468888888888999999999999999863
No 19
>2bni_A General control protein GCN4; four helix bundle, antiparallel four helix bundle acyl transferase; HET: TYZ; 1.5A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2ccn_A 1w5k_A* 2ccf_A 2cce_A 1w5j_A* 1uo2_A 1gcl_A 1uo1_A 1unv_A 1uo0_A 1unt_A 1uo5_A 1unz_A 1unx_A 1unu_A 1unw_A 1uo4_A 1uo3_A 1uny_A 1u9f_A* ...
Probab=79.17 E-value=2.8 Score=25.70 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=25.1
Q ss_pred hHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 124 RKDELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 124 hK~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
|-..||.+.-.|-..|..|+.+..||+.||..
T Consensus 2 RMnQLEdKvEeLl~~~~~L~~EV~RLk~lL~~ 33 (34)
T 2bni_A 2 RMKQIEDKLEEILSKGHHICNELARIKKLLGE 33 (34)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred chhHHHHHHHHHHHccHHHHHHHHHHHHHhcc
Confidence 44567888888888899999999999999853
No 20
>3vmx_A Voltage-gated hydrogen channel 1; coiled-coil, ION channel, ION transport, membrane protein; 1.45A {Mus musculus}
Probab=78.93 E-value=2.4 Score=27.81 Aligned_cols=24 Identities=29% Similarity=0.325 Sum_probs=19.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Q psy4946 73 QRELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 73 ~~~lIa~LE~eNR~l~~EieRLr~ 96 (165)
+-.=|.+||.-..+.-+||+||+.
T Consensus 16 L~~kv~~Le~~c~~~eQEieRL~~ 39 (48)
T 3vmx_A 16 LATKIQHLEFSCSEKEQEIERLNK 39 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccHHHHHHHHHHH
Confidence 334577899999999999999985
No 21
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=78.68 E-value=11 Score=26.86 Aligned_cols=67 Identities=25% Similarity=0.328 Sum_probs=38.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 77 VSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
...||..|+.|..+|+.|+.+... . ..+---+++.-||..-+.+-..-.-|+-...-|...+++++.
T Consensus 25 VR~LEqqN~~Le~~i~~l~~~~~~-~-------~~~~ye~~i~~Lr~~i~~~~~ek~~l~~e~dnl~~~~~~~k~ 91 (93)
T 3s4r_A 25 VRFLEQQNKILLAELEQLKGQGKS-R-------LGDLYEEEMRELRRQVDQLTNDKARVEVERDNLAEDIMRLRE 91 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccCC-C-------cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 357999999999999998865421 1 112223556666665555544444444444445555555543
No 22
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=78.53 E-value=5.5 Score=35.48 Aligned_cols=63 Identities=25% Similarity=0.340 Sum_probs=38.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcc--c--CCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhH
Q psy4946 77 VSQLESKNREIMREIARLRRQQELEGV--C--ASGFEDNPALMSELRALRMRKDELESHLASLQDSR 139 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e~~~~--~--~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhn 139 (165)
|-.|.++-|.++.+++.|+.+.....- . ......-.+|++|++.|+.....||+.+..+++..
T Consensus 33 ~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (455)
T 2dq0_A 33 ILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKI 99 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 346777777788888877776532210 0 01122445788888888777777776665555433
No 23
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=77.94 E-value=5.5 Score=34.99 Aligned_cols=63 Identities=21% Similarity=0.365 Sum_probs=41.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcc--cC--CCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhH
Q psy4946 77 VSQLESKNREIMREIARLRRQQELEGV--CA--SGFEDNPALMSELRALRMRKDELESHLASLQDSR 139 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e~~~~--~~--~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhn 139 (165)
|-.|.++-|.++.+++.|+.+.....- .. .....-.+|++|++.|+.....||+....+++.-
T Consensus 32 ~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (425)
T 2dq3_A 32 VLELDKRRREIIKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEEL 98 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446888999999999999987643221 11 1122345788998888777777776665555443
No 24
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=76.02 E-value=2.1 Score=30.43 Aligned_cols=29 Identities=24% Similarity=0.362 Sum_probs=14.8
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 126 DELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 126 ~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
..+.+||+.++..|..|+-+++.|.+-|.
T Consensus 9 e~~~~klq~~E~rN~~Le~~v~~le~~Le 37 (79)
T 3cvf_A 9 EETQQKVQDLETRNAELEHQLRAMERSLE 37 (79)
T ss_dssp -CTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 34455555555555555555555554443
No 25
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=75.33 E-value=5.7 Score=24.31 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=26.9
Q ss_pred HhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 123 MRKDELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 123 QhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
||-..||.+.-.|-..|..|+.+..||+.+|..
T Consensus 1 ~RMnQLEdkVEeLl~~~~~Le~eV~RL~~ll~~ 33 (34)
T 2hy6_A 1 MKVKQLADAVEELASANYHLANAVARLAKAVGE 33 (34)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CchhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 345678888888888999999999999999863
No 26
>2dgc_A Protein (GCN4); basic domain, leucine zipper, DNA binding, eukaryotic regulatory protein, transcription/DNA complex; HET: DNA; 2.20A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 1dgc_A* 1ld4_E 1ysa_C* 3p8m_D
Probab=75.26 E-value=3.4 Score=27.66 Aligned_cols=27 Identities=33% Similarity=0.430 Sum_probs=22.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~ 98 (165)
+++.-+.+|+.+|..|..|+.+|+.+-
T Consensus 34 ~Le~~v~~L~~eN~~L~~ev~~Lr~~l 60 (63)
T 2dgc_A 34 QLEDKVEELLSKNYHLENEVARLKKLV 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667788889999999999999998753
No 27
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=73.96 E-value=7.4 Score=25.83 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=11.7
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946 126 DELESHLASLQDSRRHLMVQLEGLM 150 (165)
Q Consensus 126 ~rLE~RM~iLedhnRQLe~QLerLr 150 (165)
..||.+...|+..|.+|..++..|.
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~ 50 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLA 50 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444444444444443
No 28
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=73.89 E-value=4.7 Score=25.62 Aligned_cols=32 Identities=19% Similarity=0.453 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHH
Q psy4946 113 ALMSELRALRMRKDELESHLASLQDSRRHLMVQLE 147 (165)
Q Consensus 113 eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLe 147 (165)
+|+.|+. -+-+.||.|+-.||..=-.|-.+|+
T Consensus 9 dlvsel~---~r~e~LE~Ri~~LE~KLd~L~~~l~ 40 (43)
T 2pnv_A 9 DMISDLN---ERSEDFEKRIVTLETKLETLIGSIH 40 (43)
T ss_dssp HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH---HhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788877 7888899999887765544444443
No 29
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=72.62 E-value=6.8 Score=38.56 Aligned_cols=11 Identities=18% Similarity=0.290 Sum_probs=4.5
Q ss_pred HHhHhHHHHHH
Q psy4946 122 RMRKDELESHL 132 (165)
Q Consensus 122 RQhK~rLE~RM 132 (165)
...|..||++.
T Consensus 1004 ~ke~~~lee~~ 1014 (1080)
T 2dfs_A 1004 QTEKKTIEEWA 1014 (1080)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33344444443
No 30
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=70.65 E-value=7.1 Score=34.31 Aligned_cols=60 Identities=17% Similarity=0.263 Sum_probs=35.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcc-cCCCC-CCChhHHHHHHHHHHhHhHHHHHHHHHH
Q psy4946 77 VSQLESKNREIMREIARLRRQQELEGV-CASGF-EDNPALMSELRALRMRKDELESHLASLQ 136 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e~~~~-~~~~~-~~~~eLlaEarlLRQhK~rLE~RM~iLe 136 (165)
|-.|.++-|.++.+++.|+.+.....- -..+. ..-.+|++|++.|+.....||+.+..++
T Consensus 30 ~~~~~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 91 (421)
T 1ses_A 30 LLALDREVQELKKRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKE 91 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457888999999999999987753221 00011 1123466666666655555555554443
No 31
>2r2v_A GCN4 leucine zipper; coiled coils, anti-parallel tetramer, protein design, de novo protein; HET: CIT; 1.90A {Saccharomyces cerevisiae} SCOP: h.1.3.1
Probab=70.31 E-value=9.8 Score=23.27 Aligned_cols=31 Identities=16% Similarity=0.255 Sum_probs=25.2
Q ss_pred hHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 124 RKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 124 hK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
|-..||.+.-.|-..+..|+.++.||++||-
T Consensus 2 RMnQledKvEel~~~~~~l~nEv~Rl~~lLg 32 (34)
T 2r2v_A 2 KLKQVADKLEEVASKLYHNANELARVAKLLG 32 (34)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 3456777777777888889999999999984
No 32
>1uii_A Geminin; human, DNA replication, cell cycle; 2.00A {Homo sapiens} SCOP: h.1.28.1
Probab=69.85 E-value=5.2 Score=28.81 Aligned_cols=51 Identities=16% Similarity=0.192 Sum_probs=37.6
Q ss_pred HHHHHHhhhhcccCCCCCCCCcccccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 43 ARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 43 arY~~~L~~~~~~~~~~p~~~~~~~d~~~e~~~lIa~LE~eNR~l~~EieRLr~q~e 99 (165)
..|-..||..-.. -..-.+++|+.+...|..|++++..+..|.++||.-.+
T Consensus 27 e~YWk~lAE~RR~------AL~eaL~EN~~Lh~~ie~l~eEi~~lk~en~eL~elae 77 (83)
T 1uii_A 27 SQYWKEVAEKRRK------ALYEALKENEKLHKEIEQKDNEIARLKKENKELAEVAE 77 (83)
T ss_dssp HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666655221 01125678899999999999999999999999997554
No 33
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=69.44 E-value=7.7 Score=27.08 Aligned_cols=27 Identities=19% Similarity=0.181 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 128 LESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 128 LE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
+.+||+.++..|..|+-+++.|.+-|.
T Consensus 5 ~~~kLq~~E~~N~~Le~~v~~le~~Le 31 (72)
T 3cve_A 5 SHMKLQEVEIRNKDLEGQLSEMEQRLE 31 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 455666666666666666666555544
No 34
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1
Probab=68.53 E-value=7.4 Score=28.65 Aligned_cols=67 Identities=21% Similarity=0.246 Sum_probs=40.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhc-------------------ccCCCCCCChhHHHHHHHHHHhHhHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEG-------------------VCASGFEDNPALMSELRALRMRKDELESHL 132 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~-------------------~~~~~~~~~~eLlaEarlLRQhK~rLE~RM 132 (165)
..+.=|.+|+.++.....|+.+|...-..+. -+..--.....||+.++.= -
T Consensus 9 ~lre~l~~le~~~~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e----------~ 78 (97)
T 2eqb_B 9 QLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKE----------K 78 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------H
Confidence 4566777888888888888888774322111 0000001234677777522 2
Q ss_pred HHHHHhHHHHHHHHHH
Q psy4946 133 ASLQDSRRHLMVQLEG 148 (165)
Q Consensus 133 ~iLedhnRQLe~QLer 148 (165)
..++..|++|..||..
T Consensus 79 ~~~e~kn~~L~~qL~d 94 (97)
T 2eqb_B 79 YAIEILNKRLTEQLRE 94 (97)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh
Confidence 3678889999999864
No 35
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens}
Probab=68.43 E-value=8.8 Score=28.72 Aligned_cols=68 Identities=18% Similarity=0.263 Sum_probs=48.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHH
Q psy4946 76 LVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQ 145 (165)
Q Consensus 76 lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~Q 145 (165)
-+.+|-.+|..|..|++.||.+......- ....-..|=.|+--||.-+..|=.+..-||.-|-.|+-+
T Consensus 4 ~~rdL~~~~~~L~~E~e~~k~K~~~~~~e--~~~~~~~Lq~El~~lr~~~~~l~~~iReLEq~NDDLER~ 71 (111)
T 2v66_B 4 RNRDLQADNQRLKYEVEALKEKLEHQYAQ--SYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERA 71 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHH
Confidence 45678888888888888888876532210 011223577788888898888888888888888888766
No 36
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=68.28 E-value=6.9 Score=26.94 Aligned_cols=26 Identities=23% Similarity=0.216 Sum_probs=14.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQ 97 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q 97 (165)
+++.-|.+||..|..+..|++.||.+
T Consensus 33 ~LE~~v~~le~~~~~l~~en~~Lr~~ 58 (70)
T 1gd2_E 33 ALETQVVTLKELHSSTTLENDQLRQK 58 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555543
No 37
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=67.37 E-value=31 Score=24.59 Aligned_cols=29 Identities=7% Similarity=0.315 Sum_probs=15.3
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e 99 (165)
..++.=|..|+.+=..+.+|+..|..+..
T Consensus 7 ~~l~~eL~~l~~eE~~L~~eL~~lEke~~ 35 (96)
T 3q8t_A 7 EQLQRELKELALEEERLIQELEDVEKNRK 35 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 34444455555555555556655555443
No 38
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=66.92 E-value=14 Score=24.06 Aligned_cols=29 Identities=17% Similarity=0.148 Sum_probs=18.2
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4946 125 KDELESHLASLQDSRRHLMVQLEGLMRLL 153 (165)
Q Consensus 125 K~rLE~RM~iLedhnRQLe~QLerLr~LL 153 (165)
-..||.+...|+..|.+|..++..|+.-+
T Consensus 24 ~~~Le~~~~~L~~~n~~L~~~i~~L~~e~ 52 (61)
T 1t2k_D 24 VQSLEKKAEDLSSLNGQLQSEVTLLRNEV 52 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566666666666666666666665543
No 39
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=66.83 E-value=17 Score=33.06 Aligned_cols=60 Identities=13% Similarity=0.055 Sum_probs=33.9
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhcc--cC--CCCCCChhHHHHHHHHHHhHhHHHHHHHHHHH
Q psy4946 78 SQLESKNREIMREIARLRRQQELEGV--CA--SGFEDNPALMSELRALRMRKDELESHLASLQD 137 (165)
Q Consensus 78 a~LE~eNR~l~~EieRLr~q~e~~~~--~~--~~~~~~~eLlaEarlLRQhK~rLE~RM~iLed 137 (165)
-.|.++-|.++.|++.|+.+.....- .. ....+-.+|++|++.|+.....||+....+++
T Consensus 36 ~~ld~~~r~~~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~ 99 (485)
T 3qne_A 36 IAEYKEWVKLRFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADK 99 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666677777777777765532210 00 01123456888888777666666666554443
No 40
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=66.57 E-value=5.6 Score=27.65 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=23.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~e 99 (165)
-.-|.+|+++++.+..|+++|+.+++
T Consensus 46 ~~yI~~L~~~~~~l~~e~~~L~~e~~ 71 (80)
T 1nlw_A 46 KLHIKKLEDSDRKAVHQIDQLQREQR 71 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55899999999999999999998775
No 41
>3e98_A GAF domain of unknown function; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 2.43A {Pseudomonas aeruginosa}
Probab=66.09 E-value=6.5 Score=32.30 Aligned_cols=18 Identities=39% Similarity=0.508 Sum_probs=8.8
Q ss_pred HHHHhHhHHHHHHHHHHH
Q psy4946 120 ALRMRKDELESHLASLQD 137 (165)
Q Consensus 120 lLRQhK~rLE~RM~iLed 137 (165)
.||++-.+||.++..|-+
T Consensus 76 ~LR~r~~~Le~~L~~Li~ 93 (252)
T 3e98_A 76 LLRERNIEMRHRLSQLMD 93 (252)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555555555544443
No 42
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=65.98 E-value=7 Score=26.69 Aligned_cols=32 Identities=16% Similarity=0.295 Sum_probs=22.0
Q ss_pred HHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy4946 118 LRALRMRKDELESHLASLQDSRRHLMVQLEGL 149 (165)
Q Consensus 118 arlLRQhK~rLE~RM~iLedhnRQLe~QLerL 149 (165)
++-|.+...+|+..+..|...+.+|+.+|..|
T Consensus 49 I~~L~~~~~~l~~e~~~L~~~~~~L~~~l~~L 80 (83)
T 1nkp_B 49 IQYMRRKNHTHQQDIDDLKRQNALLEQQVRAL 80 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777777777777777777776543
No 43
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=65.68 E-value=21 Score=31.22 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=20.0
Q ss_pred HhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946 123 MRKDELESHLASLQDSRRHLMVQLEGLM 150 (165)
Q Consensus 123 QhK~rLE~RM~iLedhnRQLe~QLerLr 150 (165)
....+|.+++..-+..||.|-.+++.|+
T Consensus 31 ~~~~~~~~~~~~~~~~rr~l~n~~~elk 58 (403)
T 4etp_A 31 LGMKELNEILIKEETVRRTLHNELQELR 58 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4445566677777778888888888775
No 44
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=65.48 E-value=14 Score=22.40 Aligned_cols=29 Identities=14% Similarity=0.172 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 126 DELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 126 ~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
..||.+.-.|-..+..|+.+..||+.||.
T Consensus 3 nQLEdKVEell~~~~~le~EV~Rl~~ll~ 31 (33)
T 2wq1_A 3 KQLEDKIEENTSKIYHNTNEIARNTKLVG 31 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 46788888888889999999999999985
No 45
>1p9i_A Cortexillin I/GCN4 hybrid peptide; coiled-coil, unknown function; 1.17A {Synthetic} SCOP: h.1.10.1
Probab=64.96 E-value=6 Score=23.44 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=20.8
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQ 97 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q 97 (165)
++..+++-||.||+.+.+-++.|-.+
T Consensus 3 qlnallasleaenkqlkakveellak 28 (31)
T 1p9i_A 3 QLNALLASLEAENKQLKAKVEELLAK 28 (31)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999988887776543
No 46
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=64.78 E-value=13 Score=26.08 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=28.1
Q ss_pred HHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946 118 LRALRMRKDELESHLASLQDSRRHLMVQLEGLM 150 (165)
Q Consensus 118 arlLRQhK~rLE~RM~iLedhnRQLe~QLerLr 150 (165)
++-|.....+|+..+..|+..|.+|..+|+.|+
T Consensus 54 I~~L~~~~~~l~~~~~~L~~~n~~L~~rl~~L~ 86 (88)
T 1nkp_A 54 ILSVQAEEQKLISEEDLLRKRREQLKHKLEQLG 86 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456778888888888999999999999998874
No 47
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=63.90 E-value=14 Score=26.36 Aligned_cols=37 Identities=24% Similarity=0.284 Sum_probs=19.0
Q ss_pred HhHhHHHHHHHHHHHhHHHHHH-------HHHHHHHHHhhcCCC
Q psy4946 123 MRKDELESHLASLQDSRRHLMV-------QLEGLMRLLKTHQGT 159 (165)
Q Consensus 123 QhK~rLE~RM~iLedhnRQLe~-------QLerLr~LL~~~~~~ 159 (165)
++-..++.+...|+.-|.+|.. ++..|+.+|.+.+++
T Consensus 36 ~r~~e~~~r~~~Le~EN~~Lr~~v~~L~~E~~~Lr~ll~~~p~~ 79 (87)
T 1hjb_A 36 MRNLETQHKVLELTAENERLQKKVEQLSRELSTLRNLFKQLPEP 79 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcHH
Confidence 3444555555555555555555 566666677765543
No 48
>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1
Probab=63.37 E-value=7.8 Score=25.21 Aligned_cols=26 Identities=23% Similarity=0.436 Sum_probs=19.5
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQ 97 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q 97 (165)
+++.=+.+|+.+|..|..++..|+.+
T Consensus 26 ~LE~~v~~L~~eN~~L~~~~~~L~~~ 51 (55)
T 1dh3_A 26 SLENRVAVLENQNKTLIEELKALKDL 51 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666778888888888888887754
No 49
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=62.47 E-value=44 Score=24.59 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=19.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~e 99 (165)
+.....||.+|..+..|+..|..+-.
T Consensus 33 e~~r~ele~~~~~l~~Ek~~L~~qL~ 58 (129)
T 2fxo_A 33 EARRKELEEKMVSLLQEKNDLQLQVQ 58 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33566888899999999988876543
No 50
>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*
Probab=62.00 E-value=8 Score=27.84 Aligned_cols=32 Identities=28% Similarity=0.418 Sum_probs=27.5
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Q psy4946 125 KDELESHLASLQDSRRHLMVQLEGLMRLLKTH 156 (165)
Q Consensus 125 K~rLE~RM~iLedhnRQLe~QLerLr~LL~~~ 156 (165)
+..|+++...|++...+|..++..+..-|+++
T Consensus 3 ~~~L~~~i~~L~~q~~~L~~ei~~~~a~L~~~ 34 (85)
T 3viq_B 3 KSQLESRVHLLEQQKEQLESSLQDALAKLKNR 34 (85)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 57899999999999999999999998776643
No 51
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=61.40 E-value=12 Score=24.65 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=27.4
Q ss_pred ccccchHHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy4946 65 LSLDTSRAQRELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 65 ~~~d~~~e~~~lIa~LE~eNR~l~~EieRLr~ 96 (165)
.-+.++..++.|++.||+.|..|.+.|.-|..
T Consensus 14 yklkenaklenivarlendnanlekdianlek 45 (56)
T 3he4_A 14 YKLKENAKLENIVARLENDNANLEKDIANLEK 45 (56)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHhcccchHHHHHHHHHH
Confidence 34567778999999999999999999988865
No 52
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=61.39 E-value=12 Score=24.41 Aligned_cols=27 Identities=30% Similarity=0.341 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~ 98 (165)
+++.=+..|+.+|..|..+|..|+.+.
T Consensus 26 ~Le~~v~~L~~~n~~L~~~v~~L~~e~ 52 (62)
T 1jnm_A 26 RLEEKVKTLKAQNSELASTANMLREQV 52 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566677888889999999998888765
No 53
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=61.09 E-value=11 Score=28.31 Aligned_cols=40 Identities=3% Similarity=0.163 Sum_probs=29.2
Q ss_pred HHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcC
Q psy4946 118 LRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQ 157 (165)
Q Consensus 118 arlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~~ 157 (165)
..+|.+++.+|++++..|+.....|...+..+...++...
T Consensus 97 ~~~l~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~~~~ 136 (148)
T 3gpv_A 97 LKLMKQQEANVLQLIQDTEKNLKKIQQKIAKYEDEISSAN 136 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4588999999999999999999999999999888887544
No 54
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=60.72 E-value=18 Score=25.25 Aligned_cols=33 Identities=27% Similarity=0.352 Sum_probs=23.4
Q ss_pred HHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 122 RMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 122 RQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
|++-..++.+...|+.-|.+|..+++.|.+-+.
T Consensus 35 k~r~~e~~~r~~~L~~eN~~L~~~v~~L~~E~~ 67 (78)
T 1gu4_A 35 KMRNLETQHKVLELTAENERLQKKVEQLSRELS 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455667777788888888887777776665544
No 55
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1
Probab=60.05 E-value=14 Score=25.83 Aligned_cols=26 Identities=15% Similarity=0.410 Sum_probs=21.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~e 99 (165)
-.-|..|+.+|..+..|++.|+.++.
T Consensus 51 ~~YI~~L~~~~~~l~~~~~~L~~~n~ 76 (88)
T 1nkp_A 51 TAYILSVQAEEQKLISEEDLLRKRRE 76 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788999999998888888887664
No 56
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=58.92 E-value=18 Score=26.13 Aligned_cols=54 Identities=11% Similarity=0.211 Sum_probs=35.1
Q ss_pred CCchhHHHHHHHHHhhhhcccCCCCCCCCcccccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 35 LDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 35 ~DeEH~LIarY~~~L~~~~~~~~~~p~~~~~~~d~~~e~~~lIa~LE~eNR~l~~EieRLr~q~e 99 (165)
.++|...|..---+|-... + +.....---.-+..||.+|..|+.|++.|+.+..
T Consensus 19 s~eev~~lKq~RRtlKNRg-y----------Aq~CR~Kr~~q~~~LE~e~~~L~~e~~~L~~e~~ 72 (90)
T 2wt7_B 19 TKDEVIRLKQKRRTLKNRG-Y----------AQSCRYKRVQQKHHLENEKTQLIQQVEQLKQEVS 72 (90)
T ss_dssp CHHHHHHHHHHHHHHHHHH-H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhhhhH-H----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777766666665441 1 1111222234567999999999999999998654
No 57
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=58.71 E-value=16 Score=22.53 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQ 97 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q 97 (165)
+++.=..+|..+|..|..|+.|||.-
T Consensus 5 QLE~kVEeLl~~~~~Le~EV~RL~~l 30 (36)
T 1kd8_A 5 QLEAEVEEIESEVWHLENEVARLEKE 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 45666678888999999999999974
No 58
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=58.37 E-value=24 Score=23.17 Aligned_cols=27 Identities=22% Similarity=0.462 Sum_probs=15.3
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy4946 126 DELESHLASLQDSRRHLMVQLEGLMRL 152 (165)
Q Consensus 126 ~rLE~RM~iLedhnRQLe~QLerLr~L 152 (165)
..||.+...|+..|..|..++..|...
T Consensus 26 ~~Le~~v~~L~~~n~~L~~ei~~L~~e 52 (63)
T 2wt7_A 26 DTLQAETDQLEDEKSALQTEIANLLKE 52 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665555554443
No 59
>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A
Probab=57.69 E-value=25 Score=22.83 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=22.9
Q ss_pred hHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 124 RKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 124 hK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
+-..||.+...|+..|..|..++..|+.-+.
T Consensus 23 ~~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~ 53 (62)
T 1jnm_A 23 RIARLEEKVKTLKAQNSELASTANMLREQVA 53 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456788888888888888888777776654
No 60
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=57.60 E-value=17 Score=22.12 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=17.7
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Q psy4946 73 QRELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 73 ~~~lIa~LE~eNR~l~~EieRLr~ 96 (165)
++.=..+|=.+|..|..|+.|||.
T Consensus 5 LE~kVEeLl~~n~~Le~EV~RLk~ 28 (33)
T 3m48_A 5 LEAKVEELLSKNWNLENEVARLKK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 344445666788899999999985
No 61
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=56.06 E-value=16 Score=25.11 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRRQQEL 100 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e~ 100 (165)
....+.|.+||..+..-..||+.||.+-..
T Consensus 21 ~~Kde~I~eLE~~L~~kd~eI~eLr~~LdK 50 (67)
T 1zxa_A 21 MLKEERIKELEKRLSEKEEEIQELKRKLHK 50 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999987653
No 62
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=55.45 E-value=34 Score=23.01 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=19.3
Q ss_pred HHHHHhHhHHHHHHHHHHHhHHHHHHH
Q psy4946 119 RALRMRKDELESHLASLQDSRRHLMVQ 145 (165)
Q Consensus 119 rlLRQhK~rLE~RM~iLedhnRQLe~Q 145 (165)
.+|++|+.+|++++..|+.....|..-
T Consensus 42 ~~L~~~~~~l~~~i~~L~~~~~~L~~~ 68 (99)
T 1q08_A 42 GIVQERLQEVEARIAELQSMQRSLQRL 68 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788888888887777666655543
No 63
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=54.85 E-value=54 Score=23.25 Aligned_cols=52 Identities=21% Similarity=0.333 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHH
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASL 135 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iL 135 (165)
.-++--|..|.++|-.+..|.+.++..++ .|..|..-|++-..-...|...|
T Consensus 23 ~lLqmEieELKekN~~L~~e~~e~~~~~~-------------~L~~en~qLk~E~~~wq~Rl~~L 74 (81)
T 2jee_A 23 TLLQMEIEELKEKNNSLSQEVQNAQHQRE-------------ELERENNHLKEQQNGWQERLQAL 74 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhH-------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33455677788888888888877777654 46677777777777777776655
No 64
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=54.56 E-value=19 Score=23.64 Aligned_cols=27 Identities=26% Similarity=0.377 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~ 98 (165)
+++.=...|+.+|..|..||..|+.+.
T Consensus 27 ~Le~~v~~L~~~n~~L~~ei~~L~~e~ 53 (63)
T 2wt7_A 27 TLQAETDQLEDEKSALQTEIANLLKEK 53 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556677777777777777776644
No 65
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=53.33 E-value=70 Score=24.13 Aligned_cols=63 Identities=17% Similarity=0.176 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLE 147 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLe 147 (165)
..+.-+..|+.+...+..|+..||.+-. .+--++.-+.+...+|..+...|+.....|+.-|.
T Consensus 72 k~~~~~~~L~~~l~~~~kE~~~lK~el~-------------~~~~k~e~~~~e~~~l~~~~~~l~~~~~~le~~~~ 134 (138)
T 3hnw_A 72 KAKKMADSLSLDIENKDKEIYDLKHELI-------------AAQIKAESSAKEIKELKSEINKYQKNIVKLETELN 134 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566777777777777777776432 12233444455555566666666666666655554
No 66
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=53.14 E-value=43 Score=22.02 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=27.1
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHH
Q psy4946 112 PALMSELRALRMRKDELESHLASLQDSRRHLMVQL 146 (165)
Q Consensus 112 ~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QL 146 (165)
.+|..++.-|.+.-..|+.++..|+..+..|..-|
T Consensus 26 ~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll 60 (63)
T 1ci6_A 26 EALTGECKELEKKNEALKERADSLAKEIQYLKDLI 60 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778888888888888888888888777665443
No 67
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=52.73 E-value=86 Score=30.72 Aligned_cols=11 Identities=45% Similarity=0.589 Sum_probs=4.0
Q ss_pred hHhHHHHHHHH
Q psy4946 124 RKDELESHLAS 134 (165)
Q Consensus 124 hK~rLE~RM~i 134 (165)
.+.+|+.++..
T Consensus 921 ~~~~Le~~l~e 931 (1184)
T 1i84_S 921 KKQELEEILHE 931 (1184)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 68
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=52.46 E-value=22 Score=22.59 Aligned_cols=26 Identities=23% Similarity=0.248 Sum_probs=21.8
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHH
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~ 96 (165)
++++.-.++||++...|++|=.-||+
T Consensus 13 k~le~~naeLEervstLq~EN~mLRq 38 (42)
T 2oqq_A 13 KDLENKNSELEERLSTLQNENQMLRH 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 56778888999999999998888875
No 69
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1
Probab=51.77 E-value=10 Score=25.78 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=21.3
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLRRQ 97 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q 97 (165)
-.-|..|+.++..|..|+++|+.+
T Consensus 56 i~YI~~L~~~~~~L~~e~~~L~~~ 79 (80)
T 1hlo_A 56 TEYIQYMRRKNHTHQQDIDDLKRQ 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 447999999999999999999975
No 70
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=51.00 E-value=1.2e+02 Score=26.21 Aligned_cols=8 Identities=13% Similarity=-0.060 Sum_probs=2.9
Q ss_pred HhHHHHHH
Q psy4946 137 DSRRHLMV 144 (165)
Q Consensus 137 dhnRQLe~ 144 (165)
..+..++.
T Consensus 544 ~~~~~le~ 551 (597)
T 3oja_B 544 QENIALEK 551 (597)
T ss_dssp HHHHHHHH
T ss_pred hhhHHHHH
Confidence 33333333
No 71
>4h22_A Leucine-rich repeat flightless-interacting protei; nucleic acid sensor, transcription; 2.89A {Homo sapiens}
Probab=50.87 E-value=73 Score=23.59 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=37.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4946 78 SQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLL 153 (165)
Q Consensus 78 a~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL 153 (165)
+++|++-|.-|--+.+|..+-. .|+=+..+|+..-.++|.-|.-++..+++.-..+++++...
T Consensus 5 ~EvEEKyrKAMVsnAQLDNEKs-------------al~YqVdlLKD~LEe~eE~~aql~Re~~eK~re~e~~Kr~~ 67 (103)
T 4h22_A 5 AEVEEKYKKAMVSNAQLDNEKT-------------NFMYQVDTLKDMLLELEEQLAESRRQYEEKNKEFEREKHAH 67 (103)
T ss_dssp ---CCTHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666676666666666665432 36666666666666666666666666666555555555443
No 72
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=50.74 E-value=15 Score=26.30 Aligned_cols=24 Identities=21% Similarity=0.469 Sum_probs=17.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 76 LVSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 76 lIa~LE~eNR~l~~EieRLr~q~e 99 (165)
=+.+-|.+|++|+.||++|+.+-+
T Consensus 46 kL~eae~rn~eL~~e~~~l~~~~e 69 (81)
T 1wt6_A 46 QLREAEARNRDLEAHVRQLQERME 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344667778888888888887665
No 73
>1q08_A Zn(II)-responsive regulator of ZNTA; MERR family transcriptional regulator; 1.90A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q09_A 1q0a_A
Probab=49.22 E-value=33 Score=23.13 Aligned_cols=30 Identities=20% Similarity=0.210 Sum_probs=14.2
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 125 KDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 125 K~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
+.-|+.+...|++.-.+|...+..|..++.
T Consensus 41 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~~~ 70 (99)
T 1q08_A 41 KGIVQERLQEVEARIAELQSMQRSLQRLND 70 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444
No 74
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=48.79 E-value=65 Score=28.23 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHH
Q psy4946 128 LESHLASLQDSRRHLMVQLEGLM 150 (165)
Q Consensus 128 LE~RM~iLedhnRQLe~QLerLr 150 (165)
++++....+..||+|-.+++.|+
T Consensus 36 ~~~~l~~~~~~rr~l~n~~~~l~ 58 (412)
T 3u06_A 36 CKEQLFQSNMERKELHNTVMDLR 58 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 33444555666777777776664
No 75
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B
Probab=48.26 E-value=18 Score=24.61 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=19.7
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~e 99 (165)
-.-|..|+.++..+..|+++|+.+..
T Consensus 46 i~YI~~L~~~~~~l~~e~~~L~~~~~ 71 (83)
T 1nkp_B 46 TEYIQYMRRKNHTHQQDIDDLKRQNA 71 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44788888888888888888776553
No 76
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=47.53 E-value=1e+02 Score=24.42 Aligned_cols=25 Identities=16% Similarity=0.178 Sum_probs=13.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~ 96 (165)
++...+..|+..--.|.+|+..|..
T Consensus 52 ELq~~~~~L~~~k~~Leke~~~LQa 76 (168)
T 3o0z_A 52 ELQERNRILENSKSQTDKDYYQLQA 76 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555555544
No 77
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=46.40 E-value=54 Score=20.79 Aligned_cols=28 Identities=29% Similarity=0.500 Sum_probs=16.8
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHhHHH
Q psy4946 114 LMSELRALRMRKDELESHLASLQDSRRH 141 (165)
Q Consensus 114 LlaEarlLRQhK~rLE~RM~iLedhnRQ 141 (165)
|=+.+|-|-.+-.+||.|.+.||.-|.=
T Consensus 8 LE~r~k~le~~naeLEervstLq~EN~m 35 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNENQM 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3344555556666677777776666643
No 78
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=46.33 E-value=51 Score=29.79 Aligned_cols=20 Identities=15% Similarity=0.232 Sum_probs=11.9
Q ss_pred HHhhhhHHHHHHHHHHHHHH
Q psy4946 79 QLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 79 ~LE~eNR~l~~EieRLr~q~ 98 (165)
.|.++-|.++.+++.|+.+.
T Consensus 74 ~ld~~~r~~~~~~~~l~~~r 93 (501)
T 1wle_A 74 STWQELRQLREQIRSLEEEK 93 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666544
No 79
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus}
Probab=46.31 E-value=76 Score=22.50 Aligned_cols=68 Identities=16% Similarity=0.325 Sum_probs=36.0
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946 77 VSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLM 150 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr 150 (165)
|..||.+...+-.||..++.+-..-. ........|-+.++-..-+++..+..|+....---+||.+|+
T Consensus 27 L~~lEke~~~l~~el~~le~E~~~L~------~eE~~~w~eyn~~~~ql~e~~dE~~Sl~~q~~~~~~qLdkL~ 94 (96)
T 3q8t_A 27 LEDVEKNRKVVAENLEKVQAEAERLD------QEEAQYQREYSEFKRQQLELDDELKSVENQMRYAQMQLDKLK 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44566677778888888877554221 011234444444444444444455555554444455555554
No 80
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=45.48 E-value=1.1e+02 Score=24.22 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=13.5
Q ss_pred HHhhhhHHHHHHHH---HHHHHHh
Q psy4946 79 QLESKNREIMREIA---RLRRQQE 99 (165)
Q Consensus 79 ~LE~eNR~l~~Eie---RLr~q~e 99 (165)
+|++=|..+..|-+ |||.++.
T Consensus 14 QL~E~n~kLk~EsE~~~rlkK~~t 37 (168)
T 3o0z_A 14 QLEEANDLLRTESDTAVRLRKSHT 37 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56666666666654 7777664
No 81
>3w03_C DNA repair protein XRCC4; coiled-coil, NHEJ, DSBS repair, KU70/80, DNA-PKCS, DNA ligas binding protein; HET: DNA; 8.49A {Homo sapiens}
Probab=45.23 E-value=17 Score=29.24 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=16.6
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 77 VSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e 99 (165)
|+.|.++|..+++|.+||+.+..
T Consensus 154 ~~~L~~~n~~LqkeNeRL~~E~n 176 (184)
T 3w03_C 154 IAENQAKNEHLQKENERLLRDWN 176 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777788888777654
No 82
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=45.22 E-value=1.5e+02 Score=26.64 Aligned_cols=65 Identities=17% Similarity=0.087 Sum_probs=34.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy4946 76 LVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGL 149 (165)
Q Consensus 76 lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerL 149 (165)
-+.+|..+-..+-++|..++...+..... ....-.+|++|++.|+.....||+.. ++++.+|..+
T Consensus 85 ~~~~l~~~rn~~sk~i~~~~~~~~~~~~~--~~~~~~~l~~~~~~l~~~i~~l~~~~-------~~~~~~l~~~ 149 (501)
T 1wle_A 85 QIRSLEEEKEAVTEAVRALVVNQDNSQVQ--QDPQYQSLRARGREIRKQLTLLYPKE-------AQLEEQFYLR 149 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCTTGG--GCHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCcccccc--ccccHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 34455556556888888887654210000 00011357777776666555555555 4555555443
No 83
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=45.08 E-value=42 Score=26.24 Aligned_cols=35 Identities=9% Similarity=0.139 Sum_probs=29.8
Q ss_pred HHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4946 119 RALRMRKDELESHLASLQDSRRHLMVQLEGLMRLL 153 (165)
Q Consensus 119 rlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL 153 (165)
.+|++|+.+|++++..|+.....|..-+..+....
T Consensus 82 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~~~~~~~ 116 (278)
T 1r8e_A 82 AFYTEQERQIREKLDFLSALEQTISLVKKRMKRQM 116 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 48899999999999999999998888877776554
No 84
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=44.99 E-value=99 Score=27.98 Aligned_cols=23 Identities=13% Similarity=0.196 Sum_probs=9.8
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHH
Q psy4946 125 KDELESHLASLQDSRRHLMVQLE 147 (165)
Q Consensus 125 K~rLE~RM~iLedhnRQLe~QLe 147 (165)
...|-.++..|++.-++++.+|.
T Consensus 80 ~~~l~~~i~~le~~~~~~~~~~~ 102 (485)
T 3qne_A 80 KEKLSNEKKEIIEKEAEADKNLR 102 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444443
No 85
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=44.72 E-value=43 Score=24.82 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=30.7
Q ss_pred HHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 118 LRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 118 arlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
..+|++++.+|++++..|+.....|...+......+.
T Consensus 83 ~~~L~~~~~~l~~~i~~L~~~~~~L~~~i~~~~~~~~ 119 (142)
T 3gp4_A 83 AELLKKQRIELKNRIDVMQEALDRLDFKIDNYDTHLI 119 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4588899999999999999999888888877766554
No 86
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=44.70 E-value=29 Score=24.61 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4946 70 SRAQRELVSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 70 ~~e~~~lIa~LE~eNR~l~~EieRLr~q~ 98 (165)
-.-+++-|++|+++|..|..|=.-||.--
T Consensus 17 VevLKe~I~EL~e~~~qLE~EN~~Lk~~a 45 (78)
T 1dip_A 17 VEILKEQIRELVEKNSQLERENTLLKTLA 45 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 35789999999999999999999999743
No 87
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=44.58 E-value=11 Score=30.89 Aligned_cols=17 Identities=18% Similarity=0.133 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhhcC
Q psy4946 141 HLMVQLEGLMRLLKTHQ 157 (165)
Q Consensus 141 QLe~QLerLr~LL~~~~ 157 (165)
+|+.+.++|++||+-..
T Consensus 47 ~l~~En~rLr~lL~~~~ 63 (255)
T 2j5u_A 47 DLKKENKDLKESLDITD 63 (255)
T ss_dssp HHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhcCcc
Confidence 35666777777777543
No 88
>2oxj_A Hybrid alpha/beta peptide based on the GCN4-P1 Se heptad positions B and F substituted...; helix bundle, foldamer, unknown function; HET: B3K B3D B3E B3S B3Y B3X B3A BAL; 2.00A {Synthetic} PDB: 2oxk_A*
Probab=44.46 E-value=35 Score=20.77 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=16.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Q psy4946 73 QRELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 73 ~~~lIa~LE~eNR~l~~EieRLr~ 96 (165)
++.=...|=.+|.+|..|.+|||.
T Consensus 6 LE~kVEeLl~~n~~Le~eV~rLk~ 29 (34)
T 2oxj_A 6 LEXKVXELLXKNXHLEXEVXRLKX 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHH
Confidence 333444555678888888888885
No 89
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Probab=44.31 E-value=1.1e+02 Score=24.71 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=8.4
Q ss_pred HHhhhhHHHHHHHHHHHH
Q psy4946 79 QLESKNREIMREIARLRR 96 (165)
Q Consensus 79 ~LE~eNR~l~~EieRLr~ 96 (165)
.|+.+|..+..|+++|..
T Consensus 136 ~~~~~~~~L~~e~~~l~~ 153 (213)
T 1ik9_A 136 ENQAKNEHLQKENERLLR 153 (213)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444444444444
No 90
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=44.01 E-value=40 Score=20.40 Aligned_cols=25 Identities=24% Similarity=0.181 Sum_probs=18.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~ 96 (165)
+++.=+.+|=.+|.++..|+.||+.
T Consensus 4 QLEdKVEell~~~~~le~EV~Rl~~ 28 (33)
T 2wq1_A 4 QLEDKIEENTSKIYHNTNEIARNTK 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3455556666778888889998885
No 91
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=43.79 E-value=44 Score=21.60 Aligned_cols=32 Identities=19% Similarity=0.428 Sum_probs=24.9
Q ss_pred HHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHH
Q psy4946 116 SELRALRMRKDELESHLASLQDSRRHLMVQLE 147 (165)
Q Consensus 116 aEarlLRQhK~rLE~RM~iLedhnRQLe~QLe 147 (165)
+++-.||+-..+|-++...|...+.+|..+|+
T Consensus 19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 19 PEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56678888888888888888887777777764
No 92
>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1
Probab=43.07 E-value=81 Score=21.88 Aligned_cols=76 Identities=22% Similarity=0.317 Sum_probs=35.2
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhh----hcccCC-CCCCCh----hHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHH
Q psy4946 75 ELVSQLESKNREIMREIARLRRQQEL----EGVCAS-GFEDNP----ALMSELRALRMRKDELESHLASLQDSRRHLMVQ 145 (165)
Q Consensus 75 ~lIa~LE~eNR~l~~EieRLr~q~e~----~~~~~~-~~~~~~----eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~Q 145 (165)
.-|..|.+.-+.+..++..++..... .+.||. ++.-++ .++.+ .......|+.++..|.+.-..|...
T Consensus 17 ~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~g~~CPvCgs~l~~~~~~~~i~~---~~~~l~~l~~~i~~l~~~i~~l~~~ 93 (112)
T 1l8d_A 17 EERNEITQRIGELKNKIGDLKTAIEELKKAKGKCPVCGRELTDEHREELLSK---YHLDLNNSKNTLAKLIDRKSELERE 93 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECTTTCCEECHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCCcCCHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444455555555443322 345765 333333 23332 2344445555555555555555555
Q ss_pred HHHHHHHH
Q psy4946 146 LEGLMRLL 153 (165)
Q Consensus 146 LerLr~LL 153 (165)
++.|..-+
T Consensus 94 ~~~l~~~~ 101 (112)
T 1l8d_A 94 LRRIDMEI 101 (112)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
No 93
>1gu4_A CAAT/enhancer binding protein beta; transcription/DNA, protein-DNA complex, transcription factor, BZIP, C/EBP; 1.80A {Homo sapiens} SCOP: h.1.3.1 PDB: 1gtw_A 1gu5_A 1h88_A 1h8a_A 1io4_A 2e43_A* 2e42_A* 1h89_A 1ci6_B 1nwq_A
Probab=42.94 E-value=34 Score=23.82 Aligned_cols=27 Identities=19% Similarity=0.402 Sum_probs=21.4
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~ 98 (165)
+...=+..|+.||..|..+|+.|+.+-
T Consensus 40 e~~~r~~~L~~eN~~L~~~v~~L~~E~ 66 (78)
T 1gu4_A 40 ETQHKVLELTAENERLQKKVEQLSREL 66 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567789999999999999888654
No 94
>3q4f_C DNA repair protein XRCC4; DSB repair, nuclear, recombination-recombination complex, DN protein-protein binding complex; HET: DNA; 5.50A {Homo sapiens}
Probab=42.78 E-value=19 Score=29.29 Aligned_cols=22 Identities=27% Similarity=0.428 Sum_probs=19.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHH
Q psy4946 77 VSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~ 98 (165)
|+.|+.+|..|++|=+||..++
T Consensus 163 i~~L~a~N~hLqkENeRL~~e~ 184 (186)
T 3q4f_C 163 IAENQAKNEHLQKENERLLRDW 184 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 5789999999999999998776
No 95
>3c3g_A Alpha/beta peptide with the GCN4-PLI SIDE chain S AN (alpha-alpha-beta) backbone; helix bundle, foldamer, unknown function protein; HET: HMR B3Q B3D B3E B3L BIL B3K BAL GOL; 1.80A {Synthetic} PDB: 3heu_A* 3het_A* 3hev_A* 3hew_A* 3hey_A* 3hex_A* 3c3h_A*
Probab=40.58 E-value=45 Score=20.19 Aligned_cols=24 Identities=17% Similarity=0.289 Sum_probs=16.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHH
Q psy4946 73 QRELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 73 ~~~lIa~LE~eNR~l~~EieRLr~ 96 (165)
++.=..+|=.+|.+|..|+.|||.
T Consensus 5 LEdKvEeLl~~~~~Le~EV~RLk~ 28 (33)
T 3c3g_A 5 IEXKLXEIXSKXYHXENXLARIKX 28 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333444555678889999999985
No 96
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=40.36 E-value=1.1e+02 Score=22.71 Aligned_cols=27 Identities=7% Similarity=0.290 Sum_probs=21.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 73 QRELVSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 73 ~~~lIa~LE~eNR~l~~EieRLr~q~e 99 (165)
...+|.+|--++-.+..|+++++.++.
T Consensus 13 rD~~Ie~Lkreie~lk~ele~l~~E~q 39 (120)
T 3i00_A 13 KDHLIERLYREISGLKAQLENMKTESQ 39 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456888888888888888888877654
No 97
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=39.95 E-value=1.2e+02 Score=25.77 Aligned_cols=72 Identities=11% Similarity=0.124 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 82 SKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 82 ~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
+-++.|++.+.|++..-....+ + .+.-|-++|+=-.-|-..|..=+.|.+.||-.-+.|..||+.++.-++.
T Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 468 (471)
T 3mq9_A 397 NVTHLLQQELTEAQKGFQDVEA-Q-AATANHTVMALMASLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVER 468 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhhHHHHHH-H-hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3355688888888763221110 0 0112344444333444555555567777777777777777777666554
No 98
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1
Probab=39.92 E-value=39 Score=23.22 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=20.4
Q ss_pred hhHHHHHH----HHHHhHhHHHHHHHHHHHhHHHHHHHHHH
Q psy4946 112 PALMSELR----ALRMRKDELESHLASLQDSRRHLMVQLEG 148 (165)
Q Consensus 112 ~eLlaEar----lLRQhK~rLE~RM~iLedhnRQLe~QLer 148 (165)
..++..|. -|++.-.+|+..+..|...+.+|..+|+.
T Consensus 39 ~~iL~kA~~yI~~L~~~~~~l~~e~~~L~~e~~~L~~~L~~ 79 (80)
T 1nlw_A 39 LSLLTKAKLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLEK 79 (80)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 35555554 34555555555555566556666555543
No 99
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=38.93 E-value=94 Score=21.73 Aligned_cols=24 Identities=13% Similarity=0.317 Sum_probs=14.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHhh
Q psy4946 77 VSQLESKNREIMREIARLRRQQEL 100 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e~ 100 (165)
|..+......|...+.+|+..|..
T Consensus 14 v~~I~~~i~~i~~~v~~l~~~~~~ 37 (127)
T 1ez3_A 14 VEEIRGFIDKIAENVEEVKRKHSA 37 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555666666777777763
No 100
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=38.45 E-value=39 Score=23.56 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=17.7
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 125 KDELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 125 K~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
-.+||.+++..++.-++|-.+|..++.
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDKfrS 68 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDKYRS 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345667777777777777777666544
No 101
>1gk7_A Vimentin; intermediate filament, heptad repeat; 1.4A {Homo sapiens} SCOP: h.1.20.1 PDB: 3g1e_A
Probab=37.81 E-value=15 Score=22.62 Aligned_cols=18 Identities=22% Similarity=0.433 Sum_probs=14.9
Q ss_pred HHHHHHHHhHHHHHHHHH
Q psy4946 130 SHLASLQDSRRHLMVQLE 147 (165)
Q Consensus 130 ~RM~iLedhnRQLe~QLe 147 (165)
.|...||..|+.|+.++.
T Consensus 20 dkVR~LE~~N~~Le~~i~ 37 (39)
T 1gk7_A 20 DKVRFLEQQNKILLAELE 37 (39)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578888999999998875
No 102
>2wvr_A Geminin; DNA replication license, DNA replication inhibitor, phosphoprotein, UBL conjugation, DNA-binding, polymorphism; HET: DNA; 3.30A {Homo sapiens}
Probab=37.81 E-value=31 Score=28.50 Aligned_cols=35 Identities=14% Similarity=0.175 Sum_probs=29.4
Q ss_pred cccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Q psy4946 66 SLDTSRAQRELVSQLESKNREIMREIARLRRQQEL 100 (165)
Q Consensus 66 ~~d~~~e~~~lIa~LE~eNR~l~~EieRLr~q~e~ 100 (165)
.+++|..+...|..|++|+..|..|.++|+.-.+.
T Consensus 113 aLeEN~~Lh~~ie~l~eEi~~LkeEn~eLkeLae~ 147 (209)
T 2wvr_A 113 ALKENEKLHKEIEQKDNEIARLKKENKELAEVAEH 147 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678888899999999999999999999975543
No 103
>2hy6_A General control protein GCN4; protein design, parallel heptamer, protein structure, biosyn protein; 1.25A {Saccharomyces cerevisiae} SCOP: h.1.3.1 PDB: 2nrn_A 3crp_A 2b1f_A 3crp_B 2ipz_A 3ck4_A 3ck4_B 2b22_A 1ce9_A
Probab=37.40 E-value=58 Score=19.81 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~ 96 (165)
+++.=..+|=.+|.+|..|+.|||.
T Consensus 5 QLEdkVEeLl~~~~~Le~eV~RL~~ 29 (34)
T 2hy6_A 5 QLADAVEELASANYHLANAVARLAK 29 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3445555667789999999999986
No 104
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=37.03 E-value=82 Score=20.19 Aligned_cols=31 Identities=19% Similarity=0.230 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHhHHHHHH
Q psy4946 114 LMSELRALRMRKDELESHLASLQDSRRHLMV 144 (165)
Q Consensus 114 LlaEarlLRQhK~rLE~RM~iLedhnRQLe~ 144 (165)
|-.++.-|-.....|...+..|++.+.+|..
T Consensus 27 Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~ 57 (61)
T 1t2k_D 27 LEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQ 57 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444445555555544444444443
No 105
>1wlq_A Geminin; coiled-coil; 2.80A {Mus musculus} PDB: 2zxx_A*
Probab=36.32 E-value=33 Score=24.58 Aligned_cols=34 Identities=18% Similarity=0.202 Sum_probs=27.2
Q ss_pred cccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 66 SLDTSRAQRELVSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 66 ~~d~~~e~~~lIa~LE~eNR~l~~EieRLr~q~e 99 (165)
.+++|..+...|..++++...+..|.++|+.-.+
T Consensus 36 aL~EN~~Lh~~ie~~~eEi~~Lk~en~~L~elA~ 69 (83)
T 1wlq_A 36 ALKENEKLHKEIEQKDSEIARLRKENKDLAEVAE 69 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888888888888888888888886544
No 106
>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A
Probab=35.93 E-value=50 Score=25.19 Aligned_cols=17 Identities=24% Similarity=0.313 Sum_probs=7.8
Q ss_pred HHHHHHHHHhHhHHHHH
Q psy4946 115 MSELRALRMRKDELESH 131 (165)
Q Consensus 115 laEarlLRQhK~rLE~R 131 (165)
.+|+.-||-+...|-.|
T Consensus 91 ~ae~erlr~~~~~~~~r 107 (121)
T 3mq7_A 91 SAEVERLRRENQVLSVR 107 (121)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhchhhhhH
Confidence 34555555444444433
No 107
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=35.80 E-value=27 Score=25.23 Aligned_cols=29 Identities=14% Similarity=0.154 Sum_probs=22.4
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhhcCC
Q psy4946 130 SHLASLQDSRRHLMVQLEGLMRLLKTHQG 158 (165)
Q Consensus 130 ~RM~iLedhnRQLe~QLerLr~LL~~~~~ 158 (165)
.||..|++.++.|..++..|+.-++.-+.
T Consensus 7 ~~~~~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 7 HRMKQLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 47888888889999998888888886553
No 108
>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A
Probab=35.24 E-value=64 Score=23.17 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=14.0
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4946 125 KDELESHLASLQDSRRHLMVQLEGLMRLL 153 (165)
Q Consensus 125 K~rLE~RM~iLedhnRQLe~QLerLr~LL 153 (165)
+-+++++ ..||+-+.+|.+|++.|++-+
T Consensus 44 ~Kr~~q~-~~LE~e~~~L~~e~~~L~~e~ 71 (90)
T 2wt7_B 44 YKRVQQK-HHLENEKTQLIQQVEQLKQEV 71 (90)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3444444 445555555555555555433
No 109
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=35.22 E-value=98 Score=26.87 Aligned_cols=40 Identities=18% Similarity=0.140 Sum_probs=31.5
Q ss_pred hhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 112 PALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 112 ~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
..|-.|++-|++.+..|+..+..++...++|..+|....+
T Consensus 6 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 45 (403)
T 4etp_A 6 AALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEET 45 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888999998888888888888765433
No 110
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=35.21 E-value=1.1e+02 Score=22.51 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHH
Q psy4946 128 LESHLASLQDSRRHLMVQLEGLMRL 152 (165)
Q Consensus 128 LE~RM~iLedhnRQLe~QLerLr~L 152 (165)
.+.+..+|+++..+|..+++.|.++
T Consensus 79 ~~~~~~~L~~~~~~l~~~i~~L~~~ 103 (142)
T 3gp4_A 79 LEARAELLKKQRIELKNRIDVMQEA 103 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433
No 111
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament, structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Probab=35.15 E-value=37 Score=24.07 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=10.9
Q ss_pred HHHHHHHhHHHHHHHHHHHH
Q psy4946 131 HLASLQDSRRHLMVQLEGLM 150 (165)
Q Consensus 131 RM~iLedhnRQLe~QLerLr 150 (165)
+...||..|+.|+.+++.+.
T Consensus 24 KVR~LEqqN~~Le~~i~~l~ 43 (93)
T 3s4r_A 24 KVRFLEQQNKILLAELEQLK 43 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 45555555666655554443
No 112
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=35.04 E-value=38 Score=21.35 Aligned_cols=20 Identities=25% Similarity=0.137 Sum_probs=9.7
Q ss_pred HHHhHHHHHHHHHHHHHHHh
Q psy4946 135 LQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 135 LedhnRQLe~QLerLr~LL~ 154 (165)
|++...+|+.+|..|+..|.
T Consensus 49 L~~ri~~Le~~l~~l~~~l~ 68 (70)
T 1zme_C 49 LQKDLNDKTEENNRLKALLL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44444445555555555443
No 113
>1kd8_B GABH BLL, GCN4 acid base heterodimer base-D12LA16L; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kd9_B 1kdd_B
Probab=34.95 E-value=60 Score=19.97 Aligned_cols=26 Identities=27% Similarity=0.443 Sum_probs=18.9
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQ 97 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q 97 (165)
+++.=..+|=.+|.+|..|+.|||.-
T Consensus 5 QLE~KVEeLl~~~~~Le~eV~RLk~l 30 (36)
T 1kd8_B 5 QLKAKVEELKSKLWHLKNKVARLKKK 30 (36)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 34444556667888899999999864
No 114
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=34.89 E-value=54 Score=24.50 Aligned_cols=29 Identities=17% Similarity=0.169 Sum_probs=22.8
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4946 70 SRAQRELVSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 70 ~~e~~~lIa~LE~eNR~l~~EieRLr~q~ 98 (165)
..++.+-|+.||+||++.-+|++..-.+-
T Consensus 87 ee~Q~~ri~~L~~E~~~~~~el~~~v~e~ 115 (132)
T 1ykh_B 87 AEEQLRKIDMLQKKLVEVEDEKIEAIKKK 115 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35778899999999999888887665544
No 115
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus}
Probab=34.83 E-value=1.2e+02 Score=21.48 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=26.0
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHH
Q psy4946 115 MSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRL 152 (165)
Q Consensus 115 laEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~L 152 (165)
+..++.=+++-.+.|.|-..||.-|++|+.-++.|-..
T Consensus 41 I~~Lq~e~~r~~e~e~r~k~le~~n~~l~~riqELE~q 78 (83)
T 4ath_A 41 IRKLQREQQRAKDLENRQKKLEHANRHLLLRVQELEMQ 78 (83)
T ss_dssp HHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 33444445566677778888888888888877777544
No 116
>2lf0_A Uncharacterized protein YIBL; two-domain protein, structural genomics, PSI-biology, protei structure initiative; NMR {Shigella flexneri}
Probab=34.58 E-value=38 Score=25.93 Aligned_cols=27 Identities=30% Similarity=0.409 Sum_probs=23.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhh
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQEL 100 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~e~ 100 (165)
..+|+++..|--.|-+||++||.++..
T Consensus 35 ~~~i~qf~~E~~~l~k~I~~lk~~q~~ 61 (123)
T 2lf0_A 35 ADKYAELEKEKATLEAEIARLREVHSQ 61 (123)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999999999999999998753
No 117
>3bas_A Myosin heavy chain, striated muscle/general control protein GCN4 chimera; alpha-helical coiled coil, disorder, salt links; 2.30A {Argopecten irradians} SCOP: h.1.26.1 PDB: 1nkn_A 3bat_A
Probab=34.53 E-value=1.1e+02 Score=21.09 Aligned_cols=42 Identities=21% Similarity=0.284 Sum_probs=32.2
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 113 ALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 113 eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
.|++|-.-|-..-...|.|+.-|.....+|+.+|..|...|.
T Consensus 46 ~l~~ek~~L~~ql~eaEe~~~~L~~~K~eLE~~l~el~~rl~ 87 (89)
T 3bas_A 46 TLLEQKNDLFGSMKQLEDKVEELLSKNYHLENEVARLKKLVG 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 466665555555777889999999999999999988877664
No 118
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=34.28 E-value=1.2e+02 Score=22.44 Aligned_cols=27 Identities=11% Similarity=0.224 Sum_probs=14.3
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 128 LESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 128 LE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
++.+..+|+++..+|..|++.|.+++.
T Consensus 93 ~~~~~~~l~~~~~~l~~~i~~L~~~~~ 119 (148)
T 3gpv_A 93 ILHRLKLMKQQEANVLQLIQDTEKNLK 119 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555555554443
No 119
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=34.23 E-value=2.4e+02 Score=25.39 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHH
Q psy4946 127 ELESHLASLQDSRRHLMVQLEGL 149 (165)
Q Consensus 127 rLE~RM~iLedhnRQLe~QLerL 149 (165)
.|-.++..|++.-++++.+|..+
T Consensus 115 ~l~~~i~~le~~~~~~~~~~~~~ 137 (484)
T 3lss_A 115 DLSDQVAGLAKEAQQLEEERDKL 137 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444445555555565543
No 120
>2j5u_A MREC protein; bacterial cell shape determining protein MREC, cell shape regulation; 2.5A {Listeria monocytogenes}
Probab=34.20 E-value=51 Score=26.88 Aligned_cols=21 Identities=10% Similarity=0.251 Sum_probs=14.1
Q ss_pred HHhhhhHHHHHHHHHHHHHHh
Q psy4946 79 QLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 79 ~LE~eNR~l~~EieRLr~q~e 99 (165)
.|.+||+.|.+|+.+|+.+..
T Consensus 23 ~l~~eN~~Lk~e~~~l~~~~~ 43 (255)
T 2j5u_A 23 NTYTENQHLKERLEELAQLES 43 (255)
T ss_dssp ---CTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 577888888888888886553
No 121
>3he5_A Synzip1; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=34.16 E-value=47 Score=21.29 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=18.9
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 76 LVSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 76 lIa~LE~eNR~l~~EieRLr~q~e 99 (165)
++++||+|-..+..|-+-|+.+.-
T Consensus 4 lvaqlenevaslenenetlkkknl 27 (49)
T 3he5_A 4 LVAQLENEVASLENENETLKKKNL 27 (49)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccHHHHHhcc
Confidence 678888888888888888887654
No 122
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=33.40 E-value=67 Score=25.06 Aligned_cols=29 Identities=3% Similarity=-0.079 Sum_probs=14.1
Q ss_pred HhHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q psy4946 125 KDELESHLASLQDSRRHLMVQLEGLMRLL 153 (165)
Q Consensus 125 K~rLE~RM~iLedhnRQLe~QLerLr~LL 153 (165)
+.-|+.+...|++...+|...+..|..++
T Consensus 81 ~~~l~~~~~~l~~~i~~l~~~~~~l~~~~ 109 (278)
T 1r8e_A 81 FAFYTEQERQIREKLDFLSALEQTISLVK 109 (278)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555555554444444443
No 123
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=33.10 E-value=1.3e+02 Score=21.29 Aligned_cols=41 Identities=17% Similarity=0.218 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 114 LMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 114 LlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
+=+.++.+.++...+|..+..|+-.+.+|+..|+.+-.-|.
T Consensus 28 ~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ 68 (101)
T 3u1c_A 28 AEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELH 68 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44667788888899999999999999999998887766555
No 124
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=33.06 E-value=99 Score=27.08 Aligned_cols=39 Identities=26% Similarity=0.149 Sum_probs=32.7
Q ss_pred ChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy4946 111 NPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGL 149 (165)
Q Consensus 111 ~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerL 149 (165)
..+|=.|+.-||+++..|+.....++..++.+..||...
T Consensus 5 ~~~l~~el~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~ 43 (412)
T 3u06_A 5 HAALSTEVVHLRQRTEELLRCNEQQAAELETCKEQLFQS 43 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356778888999999999999999999999988887553
No 125
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=32.75 E-value=59 Score=24.99 Aligned_cols=30 Identities=20% Similarity=0.203 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 70 SRAQRELVSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 70 ~~e~~~lIa~LE~eNR~l~~EieRLr~q~e 99 (165)
..++.+-|+.||+||++.-+|++..-.+-+
T Consensus 87 eeeQ~~ri~~Le~E~~~~~~el~~~v~eae 116 (151)
T 1yke_B 87 AEEQLRKIDMLQKKLVEVEDEKIEAIKKKE 116 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999998888876665443
No 126
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A
Probab=32.32 E-value=1.5e+02 Score=21.67 Aligned_cols=33 Identities=18% Similarity=0.209 Sum_probs=14.7
Q ss_pred HHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHH
Q psy4946 118 LRALRMRKDELESHLASLQDSRRHLMVQLEGLM 150 (165)
Q Consensus 118 arlLRQhK~rLE~RM~iLedhnRQLe~QLerLr 150 (165)
+.-++.....++..+..++.....+..++..+.
T Consensus 225 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (284)
T 1c1g_A 225 IKVLSDKLKEAETRAEFAERSVTKLEKSIDDLE 257 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444433
No 127
>3he4_B Synzip5; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=32.13 E-value=67 Score=20.35 Aligned_cols=25 Identities=20% Similarity=0.416 Sum_probs=18.6
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHH
Q psy4946 71 RAQRELVSQLESKNREIMREIARLR 95 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr 95 (165)
+++..-|.+||+.|.+|..=-+-|+
T Consensus 6 kelknyiqeleernaelknlkehlk 30 (46)
T 3he4_B 6 KELKNYIQELEERNAELKNLKEHLK 30 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHhHHHHHH
Confidence 6888999999999987654444444
No 128
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=31.69 E-value=81 Score=22.62 Aligned_cols=38 Identities=16% Similarity=0.161 Sum_probs=27.1
Q ss_pred HHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 117 ELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 117 EarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
|+.-|...+..|+...+.|+.+..+|..++..+.+.++
T Consensus 2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e 39 (133)
T 1fxk_C 2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEK 39 (133)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666777777777788888888777777766665
No 129
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=31.37 E-value=1.2e+02 Score=25.50 Aligned_cols=27 Identities=30% Similarity=0.239 Sum_probs=20.1
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 129 ESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 129 E~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
++.+..|+..++.|+.++++|.+....
T Consensus 184 ~~eie~L~~~~~~L~eEi~~Le~~~e~ 210 (315)
T 2ve7_A 184 AFKLESLEAKNRALNEQIARLEQERST 210 (315)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 347778888888888888888776553
No 130
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=31.31 E-value=1.4e+02 Score=21.09 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=17.3
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHh
Q psy4946 113 ALMSELRALRMRKDELESHLASLQDS 138 (165)
Q Consensus 113 eLlaEarlLRQhK~rLE~RM~iLedh 138 (165)
.|-.|+..++|-|.+++.|..-||+.
T Consensus 48 ~l~~El~s~~~~~~r~~~ri~elEeE 73 (77)
T 2w83_C 48 VLQGELEAVKQAKLKLEEKNRELEEE 73 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678889999999999998777654
No 131
>1lj2_A NSP3-C, nonstructural RNA-binding protein 34, NS34, NCVP4; NSP3, homodimer, translation, mRNA, closed loop, coiled coil; 2.38A {Simian rotavirus A} SCOP: h.1.13.2
Probab=31.29 E-value=40 Score=25.33 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhhhHHHHHHHH
Q psy4946 71 RAQRELVSQLESKNREIMREIA 92 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~Eie 92 (165)
.++..+|+.||++|..+-+||+
T Consensus 9 aqQQ~~In~lq~~~~klE~dlq 30 (110)
T 1lj2_A 9 PQQQAHIAELQVYNNKLERDLQ 30 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3678899999999999998886
No 132
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=31.05 E-value=2e+02 Score=22.92 Aligned_cols=20 Identities=20% Similarity=0.316 Sum_probs=8.6
Q ss_pred HHHHhhhhHHHHHHHHHHHH
Q psy4946 77 VSQLESKNREIMREIARLRR 96 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~ 96 (165)
|..|+.+-..+..|++.|+.
T Consensus 20 i~~l~~~~~~lp~el~~le~ 39 (256)
T 3na7_A 20 IDSLEPLIREKRKDLDKALN 39 (256)
T ss_dssp HHHTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHH
Confidence 33444444444444444443
No 133
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=30.87 E-value=64 Score=23.20 Aligned_cols=33 Identities=15% Similarity=0.206 Sum_probs=30.3
Q ss_pred HhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 123 MRKDELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 123 QhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
|||..|.+++..|+..=.+-..+-++|++|...
T Consensus 15 qRkkkL~~Ki~el~~ei~ke~~~regl~Km~~v 47 (98)
T 2ke4_A 15 QQRKRLQQQLEERSRELQKEVDQREALKKMKDV 47 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999885
No 134
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=30.44 E-value=1.1e+02 Score=21.13 Aligned_cols=43 Identities=19% Similarity=0.309 Sum_probs=34.2
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCC
Q psy4946 113 ALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQG 158 (165)
Q Consensus 113 eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~~~ 158 (165)
+.+. .|-.++..|+..+..|+..-..+..++..|..-|.+--.
T Consensus 70 ea~~---~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 70 KAVA---ELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4554 455899999999999999999999999888887775443
No 135
>3cvf_A Homer-3, homer protein homolog 3; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, phosphoprotein, polymorphism; 2.90A {Homo sapiens}
Probab=30.07 E-value=1.4e+02 Score=20.86 Aligned_cols=21 Identities=29% Similarity=0.570 Sum_probs=14.1
Q ss_pred HHHHhhhhHHHHHHHHHHHHH
Q psy4946 77 VSQLESKNREIMREIARLRRQ 97 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q 97 (165)
+..+|.+|..|..-++.|+..
T Consensus 15 lq~~E~rN~~Le~~v~~le~~ 35 (79)
T 3cvf_A 15 VQDLETRNAELEHQLRAMERS 35 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHH
Confidence 456777777777777666653
No 136
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=29.81 E-value=41 Score=24.90 Aligned_cols=27 Identities=19% Similarity=0.223 Sum_probs=22.3
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRRQQ 98 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~q~ 98 (165)
+...-|..|.++++++.+|+++|+.+.
T Consensus 29 ~l~~~v~~l~~e~k~l~ke~~~l~~~~ 55 (171)
T 2zvf_A 29 KLPKTVERFFEEWKDQRKEIERLKSVI 55 (171)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677889999999999999999764
No 137
>1gd2_E Transcription factor PAP1; basic leucine zipper, protein-DNA complex, transcription/DNA complex; HET: DNA; 2.00A {Schizosaccharomyces pombe} SCOP: h.1.3.1
Probab=29.60 E-value=1.3e+02 Score=20.36 Aligned_cols=28 Identities=18% Similarity=0.130 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 127 ELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 127 rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
.||...+.|...|.+|-.++..|..-|+
T Consensus 40 ~le~~~~~l~~en~~Lr~~i~~L~~El~ 67 (70)
T 1gd2_E 40 TLKELHSSTTLENDQLRQKVRQLEEELR 67 (70)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555556666666655443
No 138
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=29.52 E-value=2.2e+02 Score=22.75 Aligned_cols=39 Identities=18% Similarity=0.225 Sum_probs=20.4
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHH
Q psy4946 113 ALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMR 151 (165)
Q Consensus 113 eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~ 151 (165)
.|..|+..+..+...||.++.-+.+....+...+..+..
T Consensus 94 aL~kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~ 132 (256)
T 3na7_A 94 SLNIEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKK 132 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655555554444444444443333
No 139
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=29.39 E-value=51 Score=27.75 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=16.3
Q ss_pred HhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 123 MRKDELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 123 QhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
..-..|++|-..|.+-.+++..+|.+|+.-|+.
T Consensus 61 ~ql~~L~arNe~L~~~Lk~ar~El~~LkeEler 93 (251)
T 3m9b_A 61 ARIDSLAARNSKLMETLKEARQQLLALREEVDR 93 (251)
T ss_dssp HHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444445555555555555555543
No 140
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=29.14 E-value=1.7e+02 Score=23.09 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=31.8
Q ss_pred ChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 111 NPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 111 ~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
..+|-.+..-|+.-+.+||..++.|+..-..|..+...+.++++.
T Consensus 51 ~~~l~~g~~~L~~~~~~Le~~~~~L~~~i~~l~~~~~k~~e~~~~ 95 (174)
T 2p22_A 51 HEIIAIDKNHLRAVEQAIEQTMHSLNAQIDVLTANRAKVQQFSST 95 (174)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 345666666777777778888888887777777766666666654
No 141
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=29.10 E-value=1.8e+02 Score=21.76 Aligned_cols=67 Identities=12% Similarity=0.189 Sum_probs=33.9
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 75 ELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 75 ~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
..|..+......|..-+.+|+..|...-++ +. .+. .-|.+|+.-+......-+++...|+.|.+..+
T Consensus 43 ~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~-~~--~~~----------~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~ 109 (180)
T 1s94_A 43 EQVEEIRAMIDKISDNVDAVKKKHSDILSA-PQ--TDD----------QMKEELEELMTDIKRTANKVRGKLKTIELNIE 109 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC--chH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666777777777777642221 10 111 22345555555555555555555555555444
No 142
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=29.02 E-value=1.5e+02 Score=26.83 Aligned_cols=31 Identities=19% Similarity=0.347 Sum_probs=23.7
Q ss_pred HHH-HHHHHHhHhHHHHHHHHHHHhHHHHHHH
Q psy4946 115 MSE-LRALRMRKDELESHLASLQDSRRHLMVQ 145 (165)
Q Consensus 115 laE-arlLRQhK~rLE~RM~iLedhnRQLe~Q 145 (165)
++| ++.|+.....||+....+++...++...
T Consensus 109 ~~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~ 140 (484)
T 3lss_A 109 LKQLSKDLSDQVAGLAKEAQQLEEERDKLMLN 140 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 777 8888888888888888887777766554
No 143
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=28.92 E-value=1.1e+02 Score=22.45 Aligned_cols=32 Identities=38% Similarity=0.570 Sum_probs=19.9
Q ss_pred HHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHH
Q psy4946 117 ELRALRMRKDELESHLASLQDSRRHLMVQLEG 148 (165)
Q Consensus 117 EarlLRQhK~rLE~RM~iLedhnRQLe~QLer 148 (165)
++.-||...+.||.--.-|.+....|+.+|++
T Consensus 13 ~~~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~ 44 (100)
T 1go4_E 13 EADTLRLKVEELEGERSRLEEEKRMLEAQLER 44 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666666666666666666666654
No 144
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=28.75 E-value=2.3e+02 Score=22.74 Aligned_cols=32 Identities=22% Similarity=0.296 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHH
Q psy4946 114 LMSELRALRMRKDELESHLASLQDSRRHLMVQ 145 (165)
Q Consensus 114 LlaEarlLRQhK~rLE~RM~iLedhnRQLe~Q 145 (165)
|=.|+--||.-+..|-.+..-||.-|-.|+.+
T Consensus 93 Lq~el~~l~~~~~~l~~~ireLEq~NDdlEr~ 124 (189)
T 2v71_A 93 LEDDLSQTRAIKEQLHKYVRELEQANDDLERA 124 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 44455555555555555555555555444444
No 145
>2wg5_A General control protein GCN4, proteasome-activating nucleotidase; transcription hydrolase complex, nucleotide-binding; 2.10A {Saccharomyces cerevisiae} PDB: 2wg6_A
Probab=28.66 E-value=63 Score=23.22 Aligned_cols=25 Identities=40% Similarity=0.493 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~ 96 (165)
+++.-+..|..+.+.+..|+++|+.
T Consensus 11 ~l~~~~~~l~~~i~~lkeel~~L~~ 35 (109)
T 2wg5_A 11 QLEDKVEELLSKNYHLENEVARLRS 35 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4444455555555555555555543
No 146
>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1
Probab=28.47 E-value=46 Score=23.60 Aligned_cols=24 Identities=21% Similarity=0.270 Sum_probs=13.0
Q ss_pred HHHHHHHhHhHHHHHHHHHHHhHH
Q psy4946 117 ELRALRMRKDELESHLASLQDSRR 140 (165)
Q Consensus 117 EarlLRQhK~rLE~RM~iLedhnR 140 (165)
|...||.+-.+|+.|++.||-.|.
T Consensus 16 EVevLKe~I~EL~e~~~qLE~EN~ 39 (78)
T 1dip_A 16 EVEILKEQIRELVEKNSQLERENT 39 (78)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666555444443
No 147
>2ve7_A Kinetochore protein HEC1, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_C*
Probab=28.40 E-value=1.3e+02 Score=25.29 Aligned_cols=20 Identities=45% Similarity=0.705 Sum_probs=11.1
Q ss_pred HHHHhhhhHHHHHHHHHHHH
Q psy4946 77 VSQLESKNREIMREIARLRR 96 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~ 96 (165)
|..|+++|+.|..||++|+.
T Consensus 187 ie~L~~~~~~L~eEi~~Le~ 206 (315)
T 2ve7_A 187 LESLEAKNRALNEQIARLEQ 206 (315)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555544
No 148
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=28.26 E-value=91 Score=22.63 Aligned_cols=26 Identities=31% Similarity=0.468 Sum_probs=18.9
Q ss_pred HHHHHhHhHHHHHHHHHHHhHHHHHH
Q psy4946 119 RALRMRKDELESHLASLQDSRRHLMV 144 (165)
Q Consensus 119 rlLRQhK~rLE~RM~iLedhnRQLe~ 144 (165)
.+|.+|+..|++++..|+.....|..
T Consensus 82 ~~l~~~~~~l~~~i~~L~~~~~~L~~ 107 (135)
T 1q06_A 82 RRTLEKVAEIERHIEELQSMRDQLLA 107 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47788888888888777766665544
No 149
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=28.25 E-value=1.7e+02 Score=21.20 Aligned_cols=45 Identities=24% Similarity=0.371 Sum_probs=31.2
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHH
Q psy4946 74 RELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASL 135 (165)
Q Consensus 74 ~~lIa~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iL 135 (165)
...-.+|++|...|.+||.+|.. +...+|.||-.-.-|+......
T Consensus 46 d~t~~eL~~EI~~L~~eI~~LE~-----------------iqs~aK~LRnKA~~L~~eLe~F 90 (96)
T 1t3j_A 46 DMTQKHLEEEIARLSKEIDQLEK-----------------MQNNSKLLRNKAVQLESELENF 90 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHhHHHHHHHHHHHHHHHHH
Confidence 44555777777777777777765 3467889998888777665443
No 150
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA, protein-DNA complex; HET: DNA; 3.0A {Homo sapiens} SCOP: h.1.3.1
Probab=28.07 E-value=1.3e+02 Score=21.25 Aligned_cols=28 Identities=14% Similarity=0.184 Sum_probs=12.3
Q ss_pred HHHHHHhHhHHHHHHHHHHHhHHHHHHH
Q psy4946 118 LRALRMRKDELESHLASLQDSRRHLMVQ 145 (165)
Q Consensus 118 arlLRQhK~rLE~RM~iLedhnRQLe~Q 145 (165)
+.-|.+--.+|.++...|+.....|..-
T Consensus 45 ~~~Le~EN~~Lr~~v~~L~~E~~~Lr~l 72 (87)
T 1hjb_A 45 VLELTAENERLQKKVEQLSRELSTLRNL 72 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444444444444444444444433
No 151
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=27.39 E-value=2.4e+02 Score=22.59 Aligned_cols=42 Identities=21% Similarity=0.227 Sum_probs=25.1
Q ss_pred hHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 113 ALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 113 eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
.|-.+-.-|+.+.-.||+.=--||...|...+=|+.+-.-|+
T Consensus 99 ~l~~~~~~l~~~ireLEq~NDdlEr~~R~~~~SleD~e~kln 140 (189)
T 2v71_A 99 QTRAIKEQLHKYVRELEQANDDLERAKRATIMSLEDFEQRLN 140 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhHHHHHHHHH
Confidence 455555566666666666666666666666666555544443
No 152
>1urf_A Protein kinase C-like 1; transferase, G-protein, HR1 domain, helical, coiled coil, ATP-binding, serine/threonine-protein kinase, phosphorylation; NMR {Homo sapiens} SCOP: a.2.6.1 PDB: 2rmk_B*
Probab=27.26 E-value=1.7e+02 Score=20.78 Aligned_cols=13 Identities=15% Similarity=0.258 Sum_probs=10.3
Q ss_pred CCCCChhHHHHHH
Q psy4946 107 GFEDNPALMSELR 119 (165)
Q Consensus 107 ~~~~~~eLlaEar 119 (165)
++..|..|++||.
T Consensus 37 g~~~drKlLaeAQ 49 (81)
T 1urf_A 37 GSTKDRKLLLTAQ 49 (81)
T ss_dssp SSSCCHHHHHHHH
T ss_pred CCchhHHHHHHHH
Confidence 4457888999997
No 153
>1wt6_A Myotonin-protein kinase; coiled-coil, kinase activation, DMPK, molecular replacement, transferase; 1.60A {Homo sapiens}
Probab=26.77 E-value=1.7e+02 Score=20.74 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=14.3
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHhh
Q psy4946 130 SHLASLQDSRRHLMVQLEGLMRLLKT 155 (165)
Q Consensus 130 ~RM~iLedhnRQLe~QLerLr~LL~~ 155 (165)
-+.+--+..|+.|..+++.|++-+..
T Consensus 45 skL~eae~rn~eL~~e~~~l~~~~ee 70 (81)
T 1wt6_A 45 SQLREAEARNRDLEAHVRQLQERMEL 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455556666666666555554
No 154
>3j21_W 50S ribosomal protein L29P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=25.44 E-value=1.6e+02 Score=19.88 Aligned_cols=51 Identities=25% Similarity=0.396 Sum_probs=32.5
Q ss_pred HHHHH-HHHHhhhhHHHHHHHHHHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHH
Q psy4946 72 AQREL-VSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELES 130 (165)
Q Consensus 72 e~~~l-Ia~LE~eNR~l~~EieRLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~ 130 (165)
+++.+ ..+|.++-.++..|+-.||-++..++ +..||.-+ +..|---.|+-+
T Consensus 5 elr~~s~~EL~~~L~elk~ELf~LR~q~atgq-----~l~n~~~i---r~vRr~IARi~T 56 (72)
T 3j21_W 5 EIREMSIEEIDAKIRELRLQLAKERGLLTMGT-----SLENPMVI---RNLRRDIARLLT 56 (72)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHHHHHHHHHCC-----SSCCSHHH---HHHHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHHHHHHhCC-----CCCCcHHH---HHHHHHHHHHHH
Confidence 34443 56888888999999999999996432 13555444 444444444443
No 155
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=25.12 E-value=1.4e+02 Score=21.64 Aligned_cols=33 Identities=15% Similarity=0.147 Sum_probs=19.9
Q ss_pred hHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhc
Q psy4946 124 RKDELESHLASLQDSRRHLMVQLEGLMRLLKTH 156 (165)
Q Consensus 124 hK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~ 156 (165)
.+.-|+.+...|++.-.+|...+..|..++..-
T Consensus 80 ~~~~l~~~~~~l~~~i~~L~~~~~~L~~~~~~~ 112 (135)
T 1q06_A 80 VKRRTLEKVAEIERHIEELQSMRDQLLALANAC 112 (135)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445566666666666666666666666666543
No 156
>2ve7_C Kinetochore protein NUF2, kinetochore protein SPC; mitosis, centromere, cell cycle, microtubule, C division, calponin homology; 2.88A {Homo sapiens} PDB: 3iz0_D*
Probab=24.93 E-value=50 Score=27.11 Aligned_cols=36 Identities=11% Similarity=0.210 Sum_probs=22.1
Q ss_pred HHhHhHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcC
Q psy4946 122 RMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQ 157 (165)
Q Consensus 122 RQhK~rLE~RM~iLedhnRQLe~QLerLr~LL~~~~ 157 (165)
-++...+.+++..|+..|+.++.+|+.|+.-+++-.
T Consensus 147 ~~~~e~~~~~i~ql~~En~~le~~Ie~Lk~e~~e~~ 182 (250)
T 2ve7_C 147 LWQYKSSADKMQQLNAAHQEALMKLERLEKEVDEDT 182 (250)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHSCC----------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 356677888999999999999999999888776544
No 157
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=24.43 E-value=1.2e+02 Score=22.61 Aligned_cols=30 Identities=13% Similarity=0.173 Sum_probs=20.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHhhcCCCCCC
Q psy4946 133 ASLQDSRRHLMVQLEGLMRLLKTHQGTSPN 162 (165)
Q Consensus 133 ~iLedhnRQLe~QLerLr~LL~~~~~~sp~ 162 (165)
.+|+++-+....|.+.|.++++.-+-+.|.
T Consensus 50 ~iL~~~~~~~~~~i~~l~~~~~~~g~p~P~ 79 (171)
T 2rbd_A 50 NLIDEAIQAMQDENHQLEELLRSNGVGLPP 79 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Confidence 456666667777888888888866555544
No 158
>3m9b_A Proteasome-associated ATPase; coil COIL with 5 beta-strand barrel inter domain, chaperone; 3.94A {Mycobacterium tuberculosis} PDB: 3m9d_A
Probab=24.21 E-value=1.3e+02 Score=25.23 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=16.9
Q ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHH
Q psy4946 71 RAQRELVSQLESKNREIMREIARLRRQ 97 (165)
Q Consensus 71 ~e~~~lIa~LE~eNR~l~~EieRLr~q 97 (165)
++++.-|..|+.+|..|..++.++|.+
T Consensus 57 ~eL~~ql~~L~arNe~L~~~Lk~ar~E 83 (251)
T 3m9b_A 57 HQLEARIDSLAARNSKLMETLKEARQQ 83 (251)
T ss_dssp HHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666777777777655555555543
No 159
>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}
Probab=24.03 E-value=1.1e+02 Score=20.78 Aligned_cols=28 Identities=25% Similarity=0.324 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 127 ELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 127 rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
+||..+.-=.+-.++|..+|.++..++.
T Consensus 29 eLE~~L~~kd~eI~eLr~~LdK~qsVl~ 56 (67)
T 1zxa_A 29 ELEKRLSEKEEEIQELKRKLHKCQSVLP 56 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3444444444445555666666655554
No 160
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=23.29 E-value=59 Score=18.73 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=14.5
Q ss_pred HHHHhhhhHHHHHHHHHHHHH
Q psy4946 77 VSQLESKNREIMREIARLRRQ 97 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q 97 (165)
|..|-.+|..|.+||.-|.-+
T Consensus 2 irrlkqknarlkqeiaaleye 22 (28)
T 3ra3_B 2 IRRLKQKNARLKQEIAALEYE 22 (28)
T ss_dssp -CHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHhhhHHHHHHHHHHHH
Confidence 456777888888888777653
No 161
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=22.84 E-value=1.9e+02 Score=19.85 Aligned_cols=24 Identities=17% Similarity=0.210 Sum_probs=13.9
Q ss_pred HHHHhHhHHHHHHHHHHHhHHHHH
Q psy4946 120 ALRMRKDELESHLASLQDSRRHLM 143 (165)
Q Consensus 120 lLRQhK~rLE~RM~iLedhnRQLe 143 (165)
+|.+|+..|++++..|+.....|.
T Consensus 79 ~l~~~~~~l~~~i~~l~~~~~~l~ 102 (109)
T 1r8d_A 79 ALQSQKEILMKKKQRMDEMIQTID 102 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666666666655555444443
No 162
>3hhm_B NISH2 P85alpha; PI3KCA, PI3K, PIK3R1, phosphatidilynositol 3,4,5- triphosphate, wortmannin, H1047R, ATP-binding, disease mutation, kinase; HET: KWT; 2.80A {Homo sapiens} PDB: 3hiz_B 2rd0_B 4a55_B* 3mtt_A
Probab=22.78 E-value=3.1e+02 Score=23.70 Aligned_cols=36 Identities=17% Similarity=0.257 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHhHHHHHHHHHHH
Q psy4946 114 LMSELRALRMRKDELESHLASLQDSRRHLMVQLEGL 149 (165)
Q Consensus 114 LlaEarlLRQhK~rLE~RM~iLedhnRQLe~QLerL 149 (165)
|-.=+..|++-|..||+-|..-..-+|+|+.++..|
T Consensus 210 l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l 245 (373)
T 3hhm_B 210 LKSRISEIIDSRRRLEEDLKKQAAEYREIDKRMNSI 245 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 444455667778888888888888888888877744
No 163
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=22.32 E-value=79 Score=23.45 Aligned_cols=28 Identities=14% Similarity=0.264 Sum_probs=17.7
Q ss_pred HHHHHHhHhHHHHHHHHHHHhHHHHHHH
Q psy4946 118 LRALRMRKDELESHLASLQDSRRHLMVQ 145 (165)
Q Consensus 118 arlLRQhK~rLE~RM~iLedhnRQLe~Q 145 (165)
..+|..++.+|++++..|+.....|..-
T Consensus 82 ~~~L~~q~~~L~~~i~~l~~~l~~l~~~ 109 (146)
T 3hh0_A 82 LRQMHFQREVLLAEQERIAKVLSHMDEM 109 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3466677777777777666655555443
No 164
>3cve_A Homer protein homolog 1; coiled coil, alternative splicing, cell junction, cytoplasm, membrane, postsynaptic cell membrane, synapse; 1.75A {Rattus norvegicus}
Probab=22.19 E-value=2e+02 Score=19.81 Aligned_cols=23 Identities=13% Similarity=0.482 Sum_probs=16.7
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHh
Q psy4946 77 VSQLESKNREIMREIARLRRQQE 99 (165)
Q Consensus 77 Ia~LE~eNR~l~~EieRLr~q~e 99 (165)
+..+|.+|..|..-++.|+..-+
T Consensus 9 Lq~~E~~N~~Le~~v~~le~~Le 31 (72)
T 3cve_A 9 LQEVEIRNKDLEGQLSEMEQRLE 31 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 55778888888887877776443
No 165
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=22.18 E-value=1.3e+02 Score=17.80 Aligned_cols=25 Identities=28% Similarity=0.408 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIARLRR 96 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~EieRLr~ 96 (165)
+++.-+++-|.||-.|.+|+.+|..
T Consensus 5 qlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 5 QLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 4667788889999999999888764
No 166
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=21.36 E-value=71 Score=23.56 Aligned_cols=29 Identities=10% Similarity=0.212 Sum_probs=20.5
Q ss_pred hHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Q psy4946 126 DELESHLASLQDSRRHLMVQLEGLMRLLK 154 (165)
Q Consensus 126 ~rLE~RM~iLedhnRQLe~QLerLr~LL~ 154 (165)
.+|..|...|++.+++|+.+++.|+.-+.
T Consensus 28 ~~l~~~v~~l~~e~k~l~ke~~~l~~~~a 56 (171)
T 2zvf_A 28 AKLPKTVERFFEEWKDQRKEIERLKSVIA 56 (171)
T ss_dssp TSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666777777777778777777775544
No 167
>2zhg_A Redox-sensitive transcriptional activator SOXR; oxidative stress, MERR family, activator; HET: DNA; 2.80A {Escherichia coli} PDB: 2zhh_A
Probab=21.14 E-value=1.1e+02 Score=22.88 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=19.5
Q ss_pred HHHHHHhHhHHHHHHHHHHHhHHHHHH
Q psy4946 118 LRALRMRKDELESHLASLQDSRRHLMV 144 (165)
Q Consensus 118 arlLRQhK~rLE~RM~iLedhnRQLe~ 144 (165)
..+|.+|+..|++++..|+.....|..
T Consensus 92 ~~ll~~~~~~l~~qi~~L~~~~~~L~~ 118 (154)
T 2zhg_A 92 KQLSSQWREELDRRIHTLVALRDELDG 118 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357778888888888777776665543
No 168
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=20.64 E-value=1.3e+02 Score=20.67 Aligned_cols=24 Identities=21% Similarity=0.295 Sum_probs=13.2
Q ss_pred HHHHhHhHHHHHHHHHHHhHHHHH
Q psy4946 120 ALRMRKDELESHLASLQDSRRHLM 143 (165)
Q Consensus 120 lLRQhK~rLE~RM~iLedhnRQLe 143 (165)
+|.+|+..|++++..|+.....|.
T Consensus 78 ~l~~~~~~l~~~i~~l~~~~~~l~ 101 (108)
T 2vz4_A 78 HLRRQHELLSARIGKLQKMAAAVE 101 (108)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666655555444443
No 169
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}
Probab=20.09 E-value=2.2e+02 Score=19.60 Aligned_cols=69 Identities=25% Similarity=0.304 Sum_probs=31.7
Q ss_pred HHHHHHHHHhhhhHHHHHHHH-------HHHHHHhhhcccCCCCCCChhHHHHHHHHHHhHhHHHHHHHHHHHhHHHHHH
Q psy4946 72 AQRELVSQLESKNREIMREIA-------RLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMV 144 (165)
Q Consensus 72 e~~~lIa~LE~eNR~l~~Eie-------RLr~q~e~~~~~~~~~~~~~eLlaEarlLRQhK~rLE~RM~iLedhnRQLe~ 144 (165)
++|.-|-.+-.+|..|..|+. .+|.+.+.+.. .-..+=+++..||.-.+. +-| .+-.|+.
T Consensus 4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~------~R~~~E~d~~~LrkdvD~--a~l-----~r~dLE~ 70 (86)
T 3swk_A 4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEML------QREEAENTLQSFRQDVDN--ASL-----ARLDLER 70 (86)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHTTHHH--HHH-----HHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHhhHHH--HHH-----HHHHHHH
Confidence 455555555555555555544 44444442211 112333555566554432 222 2344556
Q ss_pred HHHHHHHHH
Q psy4946 145 QLEGLMRLL 153 (165)
Q Consensus 145 QLerLr~LL 153 (165)
|++.|..-|
T Consensus 71 kvesL~eEl 79 (86)
T 3swk_A 71 KVESLQEEI 79 (86)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666555544
Done!