RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4946
(165 letters)
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Length = 501
Score = 38.0 bits (89), Expect = 7e-04
Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 7/104 (6%)
Query: 46 AAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLES-KNR--EIMREIARLRRQQELEG 102
A L + G +S R+L Q+ S + + + L Q+
Sbjct: 54 ARALDLRKGELRSKDLPGIISTWQEL--RQLREQIRSLEEEKEAVTEAVRALVVNQDNSQ 111
Query: 103 VCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQL 146
+L + R +R + L A L++ ++L
Sbjct: 112 --VQQDPQYQSLRARGREIRKQLTLLYPKEAQLEEQFYLRALRL 153
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: SSA; 2.60A {Pyrococcus
horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Length = 455
Score = 37.2 bits (87), Expect = 0.001
Identities = 19/104 (18%), Positives = 39/104 (37%), Gaps = 15/104 (14%)
Query: 46 AAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLES-KNR--EIMREIARLRRQQELEG 102
L + L LDT R + ++ ++ +I EI + R++ E
Sbjct: 15 KNDLIKRGELEKVKWVDEILKLDTEW--RTKLKEINRLRHERNKIAVEIGKRRKKGE--- 69
Query: 103 VCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQL 146
L+++ R + R ELE+ + L+ + + +L
Sbjct: 70 -------PVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRL 106
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis,
CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA
synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A*
3qo8_A* 3qo5_A
Length = 485
Score = 36.8 bits (86), Expect = 0.002
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 15/85 (17%)
Query: 65 LSLDTSRAQRELVSQLESKNRE---IMREIARLRRQQELEGVCASGFEDNPALMSELRAL 121
++ +L L+ N++ + +EI + + +E D L++E L
Sbjct: 36 IAEYKEW--VKLRFDLDEHNKKLNSVQKEIGKRFKAKE----------DAKDLIAEKEKL 83
Query: 122 RMRKDELESHLASLQDSRRHLMVQL 146
K E+ A + R + Q+
Sbjct: 84 SNEKKEIIEKEAEADKNLRSKINQV 108
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 36.0 bits (83), Expect = 0.004
Identities = 22/132 (16%), Positives = 57/132 (43%), Gaps = 5/132 (3%)
Query: 31 EASRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQ----RELVSQLESKNRE 86
+ +++D+ ++ KL E + + + S+ + +L + +L ++ ES E
Sbjct: 984 KIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISE 1043
Query: 87 IMREIARLRRQ-QELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQ 145
+ + + + QELE + ++ L ++ L+ + EL++ LA ++ + + +
Sbjct: 1044 LEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALAR 1103
Query: 146 LEGLMRLLKTHQ 157
LE
Sbjct: 1104 LEDETSQKNNAL 1115
Score = 28.3 bits (63), Expect = 1.3
Identities = 18/88 (20%), Positives = 33/88 (37%)
Query: 67 LDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKD 126
L +R + E+ ++ E R R+ +ELE E+ L +L+A
Sbjct: 850 LKVTRQEEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYA 909
Query: 127 ELESHLASLQDSRRHLMVQLEGLMRLLK 154
E E L ++ L L + ++
Sbjct: 910 EAEEMRVRLAAKKQELEEILHEMEARIE 937
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus
thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A*
1set_A* 1sry_A
Length = 421
Score = 33.3 bits (77), Expect = 0.026
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 17/85 (20%)
Query: 65 LSLDTSRAQRELVSQLES-KNR--EIMREIARLRRQQELEGVCASGFEDNPALMSELRAL 121
L+LD +EL +L+ + ++ + + + E+ AL++ +AL
Sbjct: 31 LALDREV--QELKKRLQEVQTERNQVAKRVPKAPP------------EEKEALIARGKAL 76
Query: 122 RMRKDELESHLASLQDSRRHLMVQL 146
LE L + L++Q+
Sbjct: 77 GEEAKRLEEALREKEARLEALLLQV 101
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.5 bits (73), Expect = 0.057
Identities = 28/197 (14%), Positives = 55/197 (27%), Gaps = 52/197 (26%)
Query: 4 NTFDVSS---MDSRSTSTAR--SPGRYNMGTLEASRL---DDEHK-LIARYAAKLAAENR 54
N F++S + +R S +L+ + DE K L+ +Y +
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL------DC 313
Query: 55 SVGKAPSE---GS---LSL-------DTSRAQRELVSQLESKNREIMREIARL-----RR 96
P E + LS+ + + I + L R+
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 97 Q-QEL----EGV-----------CASGFEDNPALMSELRALRMRKDELESHLASLQDSRR 140
L D ++++L + + + + S+
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYL 433
Query: 141 HLMVQLEGLMRLLKTHQ 157
L V+LE L H+
Sbjct: 434 ELKVKLENEYAL---HR 447
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics,
NPPSFA, nationa on protein structural and functional
analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Length = 425
Score = 32.1 bits (74), Expect = 0.060
Identities = 18/85 (21%), Positives = 44/85 (51%), Gaps = 15/85 (17%)
Query: 65 LSLDTSRAQRELVSQLES-KNR--EIMREIARLRRQQELEGVCASGFEDNPALMSELRAL 121
L LD R RE++ +LE+ ++ ++ +EI +L+R+ + D + + ++ L
Sbjct: 33 LELDKRR--REIIKRLEALRSERNKLSKEIGKLKREGK----------DTTEIQNRVKEL 80
Query: 122 RMRKDELESHLASLQDSRRHLMVQL 146
+ D LE L +++ ++ ++ +
Sbjct: 81 KEEIDRLEEELRKVEEELKNTLLWI 105
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 32.3 bits (73), Expect = 0.068
Identities = 28/156 (17%), Positives = 53/156 (33%), Gaps = 47/156 (30%)
Query: 11 MDSRSTSTARSPGRYNMGTLE------------ASRLDDEHKLIARYAAKLAAENRSVGK 58
MD+ ST R P + G+LE AS+L ++ + L
Sbjct: 1 MDAYST---R-PLTLSHGSLEHVLLVPTASFFIASQLQEQ------FNKILPE------- 43
Query: 59 APSEGSLSLDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSEL 118
P+EG + D ELV + + ++ L + F+ L L
Sbjct: 44 -PTEGFAADDEPTTPAELVGK-------FLGYVSSLVEPSK-----VGQFDQ--VLNLCL 88
Query: 119 RALR---MRKDELESHLASLQDSRRHLMVQLEGLMR 151
+ +++ + A L +V+ + L++
Sbjct: 89 TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Score = 28.1 bits (62), Expect = 1.8
Identities = 21/139 (15%), Positives = 47/139 (33%), Gaps = 28/139 (20%)
Query: 31 EASRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVS----QLESKNRE 86
+ L +LI Y R K S +L +LV+ Q +
Sbjct: 112 NDTTLVKTKELIKNYITARIMAKRPFDK-KSNSALFRAVGEGNAQLVAIFGGQ--GNTDD 168
Query: 87 IMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQL 146
E+ ++L ++ L+ +L ++ + L + + D+ + L
Sbjct: 169 YFEEL------RDL-------YQTYHVLVGDL--IKFSAETLSELIRTTLDAEKVFTQGL 213
Query: 147 EGLMRLLKTHQGTSPNSSP 165
++ L+ P+++P
Sbjct: 214 N-ILEWLEN-----PSNTP 226
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 31.6 bits (72), Expect = 0.10
Identities = 24/125 (19%), Positives = 42/125 (33%), Gaps = 22/125 (17%)
Query: 38 EHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIARLRRQ 97
+ R KL E RSV + ++L LE+K ++ R+I ++
Sbjct: 898 RRMMAKRELKKLKIEARSVER--------------YKKLHIGLENKIMQLQRKIDEQNKE 943
Query: 98 --------QELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGL 149
LE ++ E + + LR + + SLQ+ L +L
Sbjct: 944 YKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQT 1003
Query: 150 MRLLK 154
K
Sbjct: 1004 QTEKK 1008
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.29
Identities = 4/21 (19%), Positives = 11/21 (52%), Gaps = 6/21 (28%)
Query: 145 QLEGLMRLLKTHQGTSPNSSP 165
+L+ ++L + +S+P
Sbjct: 24 KLQASLKLY------ADDSAP 38
Score = 26.5 bits (57), Expect = 3.1
Identities = 12/46 (26%), Positives = 17/46 (36%), Gaps = 23/46 (50%)
Query: 30 LEASRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRE 75
L+AS KL YA AP +L++ +A E
Sbjct: 25 LQAS-----LKL---YAD---------DSAP---ALAI---KATME 47
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 29.6 bits (67), Expect = 0.49
Identities = 17/125 (13%), Positives = 32/125 (25%), Gaps = 23/125 (18%)
Query: 30 LEASRLDDEHKLIARYAAKLAAEN------RSVGKAPSEGSLSLDTSRAQRELVSQLESK 83
L S D + + + EN + S+ E
Sbjct: 101 LGESTTD-----WKQIRSIIMRENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIV 155
Query: 84 NRE--IMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRH 141
NR + + Q + ++ + LR +LE Q
Sbjct: 156 NRASLAAGPMVKWAIAQL----------NYADMLKRVEPLRNELQKLEDDAKDNQQKLEA 205
Query: 142 LMVQL 146
L++Q+
Sbjct: 206 LLLQV 210
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription
factor, RNA polymerase recycling, activator,
ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Length = 968
Score = 29.3 bits (65), Expect = 0.62
Identities = 18/113 (15%), Positives = 41/113 (36%), Gaps = 18/113 (15%)
Query: 46 AAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCA 105
+KL + A + + A+ + + + ++ E++RL + +
Sbjct: 873 GSKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAV----- 927
Query: 106 SGFEDNPALM-SELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLKTHQ 157
NP + EL A+ + ++ L +L+ L ++ THQ
Sbjct: 928 -----NPNIRDDELTAIESNRQQVMESLDQAG-------WRLDALRLIVVTHQ 968
>1y79_1 Peptidyl-dipeptidase DCP; hinge bending, carboxypeptidase,
neurolysin, ACE, hydrolase; HET: TRP; 2.00A {Escherichia
coli}
Length = 680
Score = 27.9 bits (63), Expect = 1.8
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 32/91 (35%)
Query: 35 LDDEHKLI-----ARYAAKLAAENRSVGKAPSEGS--LSLD-----------TSRAQREL 76
++D +L A AA + G + + L RA RE
Sbjct: 186 VNDIAQLAGMSEQEIALAAEAAREK--GL---DNKWLIPLLNTTQQPALAEMRDRATREK 240
Query: 77 V---------SQLESKNREIMREIARLRRQQ 98
+ + R I++ + +R QQ
Sbjct: 241 LFIAGWTRAEKNDANDTRAIIQRLVEIRAQQ 271
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 27.3 bits (61), Expect = 2.4
Identities = 4/26 (15%), Positives = 9/26 (34%)
Query: 74 RELVSQLESKNREIMREIARLRRQQE 99
L ++M+ + L+ Q
Sbjct: 532 VTLHDYFGRGANDVMKRLKALKSIQH 557
>3s4r_A Vimentin; alpha-helix, cytoskeleton, intermediate filament,
structural; 2.45A {Homo sapiens} PDB: 3ssu_A
Length = 93
Score = 26.0 bits (58), Expect = 3.0
Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 77 VSQLESKNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQ 136
V LE +N+ ++ E+ + Q + E+R LR + D+L + A ++
Sbjct: 25 VRFLEQQNKILLAEL-EQLKGQGKSRLG-------DLYEEEMRELRRQVDQLTNDKARVE 76
Query: 137 DSRRHLMVQLEGL 149
R +L + L
Sbjct: 77 VERDNLAEDIMRL 89
>2o3e_A Neurolysin; thermolysin-like domain, substrate-binding channel,
hydrolase; 2.20A {Rattus norvegicus} PDB: 1i1i_P
Length = 678
Score = 27.2 bits (61), Expect = 3.4
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 5/35 (14%)
Query: 69 TSRAQRELV-----SQLESKNREIMREIARLRRQQ 98
R + ++ + +N I++++ LR Q
Sbjct: 233 CVPETRRKMEMAFHTRCKQENTAILQQLLPLRAQV 267
>2o36_A ThiMet oligopeptidase; thermolysin-like domain, substrate-binding
channel, hydrolase; 1.95A {Homo sapiens} PDB: 1s4b_P
Length = 674
Score = 26.8 bits (60), Expect = 3.7
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 5/35 (14%)
Query: 69 TSRAQRELV-----SQLESKNREIMREIARLRRQQ 98
R V S+ + +N I++E+ LR Q+
Sbjct: 217 HVPETRRKVEEAFNSRCKEENSAILKELVTLRAQK 251
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint
center for structural genomics, JCSG, prote structure
initiative; HET: LLP; 2.15A {Lactobacillus acidophilus
ncfm}
Length = 533
Score = 26.7 bits (59), Expect = 4.0
Identities = 14/109 (12%), Positives = 31/109 (28%)
Query: 4 NTFDVSSMDSRSTSTARSPGRYNMGTLEASRLDDEHKLIARYAAKLAAENRSVGKAPSEG 63
N FD + + RY+ L+ ++ +L A + +
Sbjct: 331 NVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIM 390
Query: 64 SLSLDTSRAQRELVSQLESKNREIMREIARLRRQQELEGVCASGFEDNP 112
+ + +I R++ R Q + + A E +
Sbjct: 391 EALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQAPKDETDT 439
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA,
BHLHZ, heterodimer, transcription/DNA complex; 1.80A
{Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A
1nlw_B
Length = 83
Score = 25.0 bits (55), Expect = 5.5
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 74 RELVSQLESKNREIMREIARLRRQQE 99
E + + KN ++I L+RQ
Sbjct: 46 TEYIQYMRRKNHTHQQDIDDLKRQNA 71
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ,
heterodimer, transcription/DNA complex; 1.80A {Homo
sapiens} SCOP: a.38.1.1
Length = 88
Score = 25.0 bits (55), Expect = 5.6
Identities = 4/25 (16%), Positives = 16/25 (64%)
Query: 75 ELVSQLESKNREIMREIARLRRQQE 99
+ ++++ ++++ E LR+++E
Sbjct: 52 AYILSVQAEEQKLISEEDLLRKRRE 76
>3bre_A Probable two-component response regulator; protein-nucleotide
complex, signaling protein; HET: C2E; 2.40A {Pseudomonas
aeruginosa} PDB: 3i5a_A*
Length = 358
Score = 26.2 bits (58), Expect = 5.7
Identities = 17/73 (23%), Positives = 22/73 (30%), Gaps = 8/73 (10%)
Query: 91 IARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDS------RRHLMV 144
+AR+R E AL + L L+ L + D RRH
Sbjct: 130 VARIRYHSRSYIALQQRDEAYRALRESQQQLLETNLVLQ-RLMNS-DGLTGLSNRRHFDE 187
Query: 145 QLEGLMRLLKTHQ 157
LE R Q
Sbjct: 188 YLEMEWRRSLREQ 200
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 25.5 bits (55), Expect = 8.1
Identities = 10/69 (14%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 31 EASRLDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIMRE 90
+A RL E + I ++ + + + A S+ +A+++L + ++ ++ +
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAA-SKVMEQEWREKAKKDLEEWNQRQSEQVEKN 134
Query: 91 IARLRRQQE 99
R +
Sbjct: 135 KINNRIADK 143
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A
{Danio rerio} PDB: 2c2v_S 2oxq_C
Length = 179
Score = 25.3 bits (55), Expect = 8.8
Identities = 8/69 (11%), Positives = 23/69 (33%)
Query: 83 KNREIMREIARLRRQQELEGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHL 142
K R E R+ ++ EL + + R + + ++ ++
Sbjct: 24 KKRWNSIEEKRISQENELHAYLSKLILAEKERELDDRVKQSDDSQNGGDISKMKSKHDKY 83
Query: 143 MVQLEGLMR 151
++ ++ L
Sbjct: 84 LMDMDELFS 92
>3mag_A VP39; methylated adenine, methyltransferase, RNA CAP analog, poly
(A) polymerase, mRNA processing, transcription; HET: SAH
3MA; 1.80A {Vaccinia virus} SCOP: c.66.1.25 PDB: 1bky_A*
1jsz_A* 1v39_A* 1p39_A* 1vp9_A* 2vp3_A* 1eam_A* 1jte_A*
1jtf_A* 4dcg_A* 3mct_A* 1b42_A* 1eqa_A* 1av6_A* 3er9_A*
2gaf_A 3er8_A 2ga9_A* 3erc_A*
Length = 307
Score = 25.5 bits (55), Expect = 10.0
Identities = 9/41 (21%), Positives = 19/41 (46%)
Query: 114 LMSELRALRMRKDELESHLASLQDSRRHLMVQLEGLMRLLK 154
L+S++R+ R + + L S + ++ L + LK
Sbjct: 135 LISDVRSKRGGNEPSTADLLSNYALQNVMISILNPVASSLK 175
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.312 0.125 0.328
Gapped
Lambda K H
0.267 0.0533 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,253,737
Number of extensions: 126474
Number of successful extensions: 415
Number of sequences better than 10.0: 1
Number of HSP's gapped: 402
Number of HSP's successfully gapped: 99
Length of query: 165
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 79
Effective length of database: 4,300,587
Effective search space: 339746373
Effective search space used: 339746373
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.6 bits)