RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4946
         (165 letters)



>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate
          isomerase (RpiA), catalytic domain {Thermus
          thermophilus [TaxId: 274]}
          Length = 151

 Score = 25.1 bits (54), Expect = 3.3
 Identities = 13/52 (25%), Positives = 17/52 (32%), Gaps = 9/52 (17%)

Query: 35 LDDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNRE 86
          L+   K  A  A     +   VG         L T    R  V +L  + RE
Sbjct: 3  LESYKKEAAHAAIAYVQDGMVVG---------LGTGSTARYAVLELARRLRE 45


>d2f7fa1 c.1.17.1 (A:141-485) Putative nicotinate
           phosphoribosyltransferase EF2626 {Enterococcus faecalis
           [TaxId: 1351]}
          Length = 345

 Score = 25.3 bits (55), Expect = 3.8
 Identities = 6/50 (12%), Positives = 16/50 (32%), Gaps = 4/50 (8%)

Query: 112 PALMSELRALRMRKDELESHLASLQDSRRHLMVQLEGL----MRLLKTHQ 157
                 +      + +    L +L + +++    L+ L     R L   +
Sbjct: 270 DFEARPVLQDIFVEGKRVYELPTLDEIKQYAKENLDSLHEEYKRDLNPQK 319


>d1sfea2 c.55.7.1 (A:12-92) Ada DNA repair protein {Escherichia coli
           [TaxId: 562]}
          Length = 81

 Score = 23.9 bits (51), Expect = 5.4
 Identities = 8/48 (16%), Positives = 14/48 (29%)

Query: 101 EGVCASGFEDNPALMSELRALRMRKDELESHLASLQDSRRHLMVQLEG 148
            G+CA    D+ A +           +        Q   R ++  L  
Sbjct: 22  RGICAILLGDDDATLISELQQMFPAADNAPADLMFQQHVREVIASLNQ 69


>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate
          isomerase (RpiA), catalytic domain {Archaeon Pyrococcus
          horikoshii [TaxId: 53953]}
          Length = 149

 Score = 23.9 bits (51), Expect = 7.7
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 9/53 (16%)

Query: 36 DDEHKLIARYAAKLAAENRSVGKAPSEGSLSLDTSRAQRELVSQLESKNREIM 88
          ++  K+ A+ A K   ++  +G         L T       +  L  K +   
Sbjct: 4  EEMKKIAAKEALKFIEDDMVIG---------LGTGSTTAYFIKLLGEKLKRGE 47


>d1he1a_ a.24.11.1 (A:) ExoS toxin {Pseudomonas aeruginosa [TaxId:
           287]}
          Length = 135

 Score = 24.1 bits (52), Expect = 8.1
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 10/107 (9%)

Query: 3   SNTFDVSSM--DSRSTSTARSPGRYNMGTLEASRLDDEHKLIARYAAKLAAENRSVGKAP 60
             T     +  +    ++     R     L   R   + +     A +L    RS+G   
Sbjct: 29  LATLTPEGLAREHSRLASGDGALRSLSTALAGIRAGSQVEESRIQAGRLL--ERSIGGIA 86

Query: 61  SE------GSLSLDTSRAQRELVSQLESKNREIMREIARLRRQQELE 101
            +      G+ S     A  EL  ++  +  ++M E+A LR+  E E
Sbjct: 87  LQQWGTTGGAASQLVLDASPELRREITDQLHQVMSEVALLRQAVESE 133


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.312    0.125    0.328 

Gapped
Lambda     K      H
   0.267   0.0569    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 505,923
Number of extensions: 20893
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 29
Length of query: 165
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 86
Effective length of database: 1,322,926
Effective search space: 113771636
Effective search space used: 113771636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 49 (23.0 bits)