BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4949
(275 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1EG3|A Chain A, Structure Of A Dystrophin Ww Domain Fragment In Complex
With A Beta-Dystroglycan Peptide
pdb|1EG4|A Chain A, Structure Of A Dystrophin Ww Domain Fragment In Complex
With A Beta-Dystroglycan Peptide
Length = 261
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/125 (32%), Positives = 59/125 (47%), Gaps = 7/125 (5%)
Query: 67 SAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQLCDCNGHLVAWKFNEYLQDVLA 126
+ Y GRIRV S K + ++C L DK RY+F Q+ G + L D +
Sbjct: 139 NVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFKQVASSTGFCDQRRLGLLLHDSIQ 198
Query: 127 IPAAVLESPSF--SYTDTLAQEIFS-GNGKVTVND--FMDTMMSEPGPACLIWLPLLHRL 181
IP + E SF S + + F N K + F+D M E P ++WLP+LHR+
Sbjct: 199 IPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMRLE--PQSMVWLPVLHRV 256
Query: 182 TAVES 186
A E+
Sbjct: 257 AAAET 261
>pdb|2E5R|A Chain A, Solution Structure Of The Zz Domain Of Dystrobrevin Alpha
(Dystrobrevin-Alpha)
Length = 63
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 35/50 (70%)
Query: 189 HPIACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEVKE 238
HP+ C C + +GFRYRC +C N+Q+CQ+CFW G G H+ +H++KE
Sbjct: 10 HPVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKE 59
>pdb|1BJF|A Chain A, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
pdb|1BJF|B Chain B, Crystal Structure Of Recombinant Bovine Neurocalcin Delta
At 2.4 Angstroms
Length = 193
Score = 36.6 bits (83), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 53/106 (50%), Gaps = 7/106 (6%)
Query: 75 GRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLE 133
G I +AL+ GKL KL++ FS D NG++ + E +Q + + ++V++
Sbjct: 78 GTIDFREFIIALSVTSRGKLEQKLKWAFSMYDLDGNGYISKAEMLEIVQAIYKMVSSVMK 137
Query: 134 SPSFSYT-DTLAQEIF-----SGNGKVTVNDFMDTMMSEPGPACLI 173
P T + ++IF + +GK+++ +F+ S+P L+
Sbjct: 138 MPEDESTPEKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPSIVRLL 183
>pdb|4AD1|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens
pdb|4AD2|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With
Glucose-1,3-Isofagomine
pdb|4AD2|B Chain B, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With
Glucose-1,3-Isofagomine
pdb|4AD2|C Chain C, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With
Glucose-1,3-Isofagomine
pdb|4AD2|D Chain D, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With
Glucose-1,3-Isofagomine
pdb|4AD3|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Deoxymannojirimycin
pdb|4AD3|B Chain B, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Deoxymannojirimycin
pdb|4AD3|C Chain C, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Deoxymannojirimycin
pdb|4AD3|D Chain D, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Deoxymannojirimycin
pdb|4AD4|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Isofagomine And Alpha-1,2-Mannobiose
pdb|4AD5|A Chain A, Structure Of The Gh99 Endo-Alpha-Mannosidase From
Bacteroides Xylanisolvens In Complex With Glucose-1,3-
Deoxymannojirimycin And Alpha-1,2-Mannobiose
Length = 380
Score = 32.0 bits (71), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
Query: 234 HEVKENHPVNKLVTRYANHFAVFRKKLKPT--IYHGFL 269
++EN + KL+TRY NH A +RK KP IY +L
Sbjct: 164 QNLREN--IVKLITRYGNHPAFYRKDGKPLFFIYDSYL 199
>pdb|1PJZ|A Chain A, Solution Structure Of Thiopurine Methyltransferase From
Pseudomonas Syringae
Length = 203
Score = 31.2 bits (69), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 10/58 (17%)
Query: 108 CNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSGNGKVTVNDFMDTMMS 165
C+G L+ ++++ A+LE P FS T + SGN +VT DT+ S
Sbjct: 134 CSGLLITLEYDQ----------ALLEGPPFSVPQTWLHRVMSGNWEVTKVGGQDTLHS 181
>pdb|2DIP|A Chain A, Solution Structure Of The Zz Domain Of Zinc Finger Swim
Domain Containing Protein 2
Length = 98
Score = 30.8 bits (68), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 191 IACDACGRANFVGFRYRCAKCGNFQMCQECF 221
I C+ C + G Y+C +C + +CQECF
Sbjct: 32 IPCNNCKQFPIEGKCYKCTECIEYHLCQECF 62
>pdb|1PQZ|A Chain A, Murine Cytomegalovirus Immunomodulatory Protein M144
Length = 238
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 39/110 (35%), Gaps = 2/110 (1%)
Query: 148 FSGNGKVTVNDFMDTMMSEPGPACLIWLPLLHRLTAVESTSHPIACDACGRANFVGFRYR 207
++ +G T +D T SE C L +L + S + + G R R
Sbjct: 101 YAYDGNETEDDTA-TSASERARDCQKKLTEYRKLVLASAVSPQLEVERRSSGREGGMRLR 159
Query: 208 CAKCGNFQMCQECFWWGRVSGGHNLEHEVKENH-PVNKLVTRYANHFAVF 256
C + E WW GG L K++H P+ Y H V+
Sbjct: 160 CFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGQGLYQKHIDVY 209
>pdb|3HV0|A Chain A, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
pdb|3HV0|B Chain B, Tryptophanyl-Trna Synthetase From Cryptosporidium Parvum
Length = 393
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 110 GHLVAWKFNEYLQDVLAIPAAV 131
GHLV + F +YLQD +P +
Sbjct: 91 GHLVPFLFTKYLQDTFKVPLVI 112
>pdb|1G8I|A Chain A, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|1G8I|B Chain B, Crystal Structure Of Human Frequenin (Neuronal Calcium
Sensor 1)
pdb|2LCP|A Chain A, Nmr Structure Of Calcium Loaded, Un-Myristoylated Human
Ncs-1
Length = 190
Score = 28.1 bits (61), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 13/103 (12%)
Query: 75 GRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAV-- 131
GRI AL+ G L +KLR+ F D +G++ NE L V AI V
Sbjct: 78 GRIEFSEFIQALSVTSRGTLDEKLRWAFKLYDLDNDGYITR---NEMLDIVDAIYQMVGN 134
Query: 132 -LESPSFSYT-DTLAQEIFS-----GNGKVTVNDFMDTMMSEP 167
+E P T + IF+ +GK+T+ +F + ++P
Sbjct: 135 TVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKADP 177
>pdb|3OPY|I Chain I, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|J Chain J, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|K Chain K, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
pdb|3OPY|L Chain L, Crystal Structure Of Pichia Pastoris Phosphofructokinase
In The T- State
Length = 351
Score = 28.1 bits (61), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 6/31 (19%)
Query: 231 NLEHEVKE------NHPVNKLVTRYANHFAV 255
NL HE +E N PV+KL+T Y N++ V
Sbjct: 50 NLAHETQEFSRKNDNAPVDKLLTNYYNNYEV 80
>pdb|3C5K|A Chain A, Crystal Structure Of Human Hdac6 Zinc Finger Domain
Length = 109
Score = 27.3 bits (59), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 208 CAKCGNFQ---MCQECF--WWGRVSGGHNLEHEVKENHPV 242
C CG Q +C C+ + GR GH L+H HP+
Sbjct: 27 CGDCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPL 66
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.136 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,676,152
Number of Sequences: 62578
Number of extensions: 287868
Number of successful extensions: 798
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 791
Number of HSP's gapped (non-prelim): 16
length of query: 275
length of database: 14,973,337
effective HSP length: 97
effective length of query: 178
effective length of database: 8,903,271
effective search space: 1584782238
effective search space used: 1584782238
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.3 bits)