Query psy4949
Match_columns 275
No_of_seqs 218 out of 762
Neff 6.6
Searched_HMMs 46136
Date Fri Aug 16 22:00:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4949.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4949hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4301|consensus 100.0 1.3E-68 2.8E-73 487.2 11.4 254 1-254 51-304 (434)
2 KOG4286|consensus 100.0 2.7E-60 5.9E-65 465.0 15.3 265 2-272 416-691 (966)
3 PF09069 EF-hand_3: EF-hand; 100.0 1E-29 2.2E-34 195.2 4.8 87 94-182 1-90 (90)
4 KOG0044|consensus 99.9 2.3E-26 4.9E-31 199.9 12.5 138 24-166 21-176 (193)
5 PF09068 EF-hand_2: EF hand; 99.9 2.9E-23 6.3E-28 169.9 8.0 89 1-90 36-127 (127)
6 cd02334 ZZ_dystrophin Zinc fin 99.8 6.3E-21 1.4E-25 130.8 4.0 49 191-239 1-49 (49)
7 cd02345 ZZ_dah Zinc finger, ZZ 99.7 1.7E-17 3.7E-22 114.0 3.7 49 191-239 1-49 (49)
8 cd02343 ZZ_EF Zinc finger, ZZ 99.7 2.2E-17 4.9E-22 112.2 3.4 47 191-238 1-47 (48)
9 cd02338 ZZ_PCMF_like Zinc fing 99.7 4.7E-17 1E-21 111.9 4.4 48 191-238 1-48 (49)
10 cd02339 ZZ_Mind_bomb Zinc fing 99.6 2.1E-16 4.6E-21 106.6 3.9 45 191-239 1-45 (45)
11 cd02344 ZZ_HERC2 Zinc finger, 99.6 5E-16 1.1E-20 104.5 3.8 44 191-238 1-44 (45)
12 cd02341 ZZ_ZZZ3 Zinc finger, Z 99.6 1.4E-15 3E-20 104.0 4.0 45 191-238 1-47 (48)
13 cd02340 ZZ_NBR1_like Zinc fing 99.6 2.9E-15 6.2E-20 100.2 3.5 42 191-238 1-42 (43)
14 cd02335 ZZ_ADA2 Zinc finger, Z 99.5 5.6E-15 1.2E-19 101.6 4.2 47 192-238 2-48 (49)
15 PF00569 ZZ: Zinc finger, ZZ t 99.5 8.1E-15 1.8E-19 99.5 2.2 44 188-231 2-45 (46)
16 cd02249 ZZ Zinc finger, ZZ typ 99.4 8.1E-14 1.7E-18 94.5 3.9 46 191-239 1-46 (46)
17 cd02342 ZZ_UBA_plant Zinc fing 99.4 5.2E-14 1.1E-18 92.9 2.3 33 191-223 1-33 (43)
18 smart00291 ZnF_ZZ Zinc-binding 99.4 2.4E-13 5.3E-18 91.3 3.7 43 188-231 2-44 (44)
19 COG5126 FRQ1 Ca2+-binding prot 99.4 1.8E-11 3.9E-16 103.7 13.5 128 23-166 11-157 (160)
20 KOG1280|consensus 99.3 1E-12 2.2E-17 121.4 3.5 56 188-243 5-61 (381)
21 KOG0034|consensus 99.3 5E-11 1.1E-15 103.7 12.3 133 24-166 25-176 (187)
22 KOG4582|consensus 99.2 1.4E-11 3E-16 113.3 4.2 47 191-241 153-199 (278)
23 cd02337 ZZ_CBP Zinc finger, ZZ 98.8 2.6E-09 5.7E-14 70.7 2.2 30 192-223 2-31 (41)
24 PTZ00184 calmodulin; Provision 98.8 3.4E-07 7.4E-12 74.3 14.1 93 62-165 49-148 (149)
25 PTZ00183 centrin; Provisional 98.7 3.9E-07 8.5E-12 75.1 14.2 131 7-166 18-155 (158)
26 KOG0027|consensus 98.7 1.8E-07 3.9E-12 78.1 10.6 120 23-164 22-148 (151)
27 cd02336 ZZ_RSC8 Zinc finger, Z 98.5 1E-07 2.2E-12 64.3 3.4 42 191-233 1-42 (45)
28 KOG0457|consensus 98.4 1.2E-07 2.6E-12 90.6 3.3 51 190-241 14-65 (438)
29 PTZ00183 centrin; Provisional 98.2 2.4E-05 5.2E-10 64.3 11.3 109 45-165 4-118 (158)
30 PF13499 EF-hand_7: EF-hand do 98.2 3.7E-06 8.1E-11 60.0 5.5 59 62-120 2-65 (66)
31 PLN02964 phosphatidylserine de 98.1 1.2E-05 2.7E-10 81.6 9.0 71 53-123 172-243 (644)
32 PTZ00184 calmodulin; Provision 98.1 1.8E-05 3.9E-10 64.1 8.2 92 64-165 15-112 (149)
33 KOG0027|consensus 98.0 2.6E-05 5.6E-10 65.1 8.8 98 63-166 11-114 (151)
34 KOG4666|consensus 98.0 1.1E-05 2.4E-10 75.1 7.0 144 34-194 229-382 (412)
35 COG5114 Histone acetyltransfer 97.9 4.1E-06 9E-11 77.4 2.2 53 190-242 5-57 (432)
36 COG5126 FRQ1 Ca2+-binding prot 97.9 0.00012 2.6E-09 62.3 10.7 73 50-122 70-155 (160)
37 PF13499 EF-hand_7: EF-hand do 97.9 1.1E-05 2.3E-10 57.6 2.8 60 97-163 1-66 (66)
38 cd00051 EFh EF-hand, calcium b 97.8 9.2E-05 2E-09 50.0 6.5 59 63-121 3-62 (63)
39 PF00036 EF-hand_1: EF hand; 97.7 4.8E-05 1E-09 46.5 4.0 27 63-89 3-29 (29)
40 KOG0038|consensus 97.7 0.00016 3.5E-09 60.5 8.2 103 61-171 72-181 (189)
41 smart00027 EH Eps15 homology d 97.7 0.00015 3.2E-09 56.0 7.2 65 62-128 12-77 (96)
42 cd00252 SPARC_EC SPARC_EC; ext 97.6 8.2E-05 1.8E-09 60.1 5.1 57 94-165 46-108 (116)
43 KOG0037|consensus 97.6 0.00079 1.7E-08 59.6 11.4 75 47-121 106-186 (221)
44 KOG0028|consensus 97.6 0.00038 8.3E-09 59.0 8.3 133 21-165 22-170 (172)
45 KOG0034|consensus 97.6 0.0016 3.6E-08 56.8 12.6 115 5-122 32-174 (187)
46 cd00052 EH Eps15 homology doma 97.6 0.00027 5.8E-09 49.9 6.2 59 64-124 3-62 (67)
47 KOG0037|consensus 97.5 0.00077 1.7E-08 59.7 9.6 84 63-163 97-186 (221)
48 cd05026 S-100Z S-100Z: S-100Z 97.4 0.00052 1.1E-08 53.0 7.0 71 53-124 4-82 (93)
49 cd00252 SPARC_EC SPARC_EC; ext 97.4 0.00033 7.2E-09 56.5 5.7 58 60-121 48-106 (116)
50 cd00213 S-100 S-100: S-100 dom 97.3 0.00089 1.9E-08 50.5 7.1 69 55-124 4-80 (88)
51 cd05022 S-100A13 S-100A13: S-1 97.3 0.0012 2.5E-08 50.9 7.6 69 55-124 4-76 (89)
52 PRK12309 transaldolase/EF-hand 97.2 0.00094 2E-08 64.5 7.8 56 59-127 333-389 (391)
53 KOG4347|consensus 97.2 0.0011 2.4E-08 66.6 8.4 60 57-117 552-612 (671)
54 cd05031 S-100A10_like S-100A10 97.2 0.002 4.4E-08 49.4 7.8 61 63-123 11-79 (94)
55 cd05025 S-100A1 S-100A1: S-100 97.2 0.0025 5.5E-08 48.7 7.9 69 55-124 5-81 (92)
56 PF13833 EF-hand_8: EF-hand do 97.1 0.002 4.3E-08 44.0 6.2 51 73-123 1-53 (54)
57 cd05027 S-100B S-100B: S-100B 97.1 0.0035 7.6E-08 48.0 8.1 62 63-124 11-80 (88)
58 cd00213 S-100 S-100: S-100 dom 96.8 0.003 6.6E-08 47.6 5.5 63 96-164 8-78 (88)
59 KOG0036|consensus 96.8 0.01 2.3E-07 57.1 10.2 93 62-166 53-147 (463)
60 cd05024 S-100A10 S-100A10: A s 96.8 0.012 2.7E-07 45.5 8.8 74 5-92 7-83 (91)
61 cd05029 S-100A6 S-100A6: S-100 96.8 0.0095 2.1E-07 45.6 8.1 70 54-124 5-80 (88)
62 PF13405 EF-hand_6: EF-hand do 96.8 0.0024 5.2E-08 39.0 3.9 25 63-87 3-27 (31)
63 PLN02964 phosphatidylserine de 96.8 0.008 1.7E-07 61.5 9.8 87 64-165 147-243 (644)
64 cd05022 S-100A13 S-100A13: S-1 96.7 0.0052 1.1E-07 47.3 6.1 71 5-90 7-77 (89)
65 PF00036 EF-hand_1: EF hand; 96.7 0.0019 4E-08 39.4 2.8 26 98-123 2-28 (29)
66 cd05026 S-100Z S-100Z: S-100Z 96.6 0.014 3E-07 45.0 8.1 74 5-90 9-83 (93)
67 cd05023 S-100A11 S-100A11: S-1 96.6 0.016 3.4E-07 44.5 8.2 73 5-89 8-81 (89)
68 PF13405 EF-hand_6: EF-hand do 96.6 0.0026 5.6E-08 38.9 3.0 26 97-122 1-27 (31)
69 cd00052 EH Eps15 homology doma 96.5 0.005 1.1E-07 43.2 4.7 54 98-164 1-60 (67)
70 PF14658 EF-hand_9: EF-hand do 96.5 0.0099 2.1E-07 43.3 6.2 59 65-123 3-64 (66)
71 KOG0044|consensus 96.5 0.011 2.5E-07 51.8 7.8 62 61-122 101-174 (193)
72 cd05031 S-100A10_like S-100A10 96.4 0.0058 1.3E-07 46.9 4.9 64 95-164 7-78 (94)
73 cd05030 calgranulins Calgranul 96.4 0.029 6.3E-07 42.7 8.6 75 5-90 7-81 (88)
74 cd00051 EFh EF-hand, calcium b 96.4 0.0076 1.6E-07 40.3 4.7 56 97-163 1-62 (63)
75 cd05030 calgranulins Calgranul 96.1 0.024 5.1E-07 43.2 6.8 69 55-124 4-80 (88)
76 cd05027 S-100B S-100B: S-100B 96.0 0.052 1.1E-06 41.5 8.3 72 5-89 7-80 (88)
77 KOG0036|consensus 96.0 0.031 6.7E-07 54.0 8.5 62 62-123 16-79 (463)
78 cd05025 S-100A1 S-100A1: S-100 95.9 0.062 1.3E-06 40.9 8.3 72 6-90 9-82 (92)
79 cd05029 S-100A6 S-100A6: S-100 95.9 0.056 1.2E-06 41.3 8.0 69 5-86 9-77 (88)
80 smart00027 EH Eps15 homology d 95.9 0.024 5.2E-07 43.6 5.9 58 95-165 9-72 (96)
81 cd05023 S-100A11 S-100A11: S-1 95.8 0.071 1.5E-06 40.8 8.3 70 54-124 4-81 (89)
82 PF13202 EF-hand_5: EF hand; P 95.8 0.016 3.5E-07 33.9 3.6 21 64-84 3-23 (25)
83 KOG2562|consensus 95.6 0.039 8.4E-07 54.0 7.1 88 71-161 326-420 (493)
84 PF07649 C1_3: C1-like domain; 95.4 0.009 2E-07 36.5 1.5 27 192-220 2-29 (30)
85 KOG2643|consensus 95.3 0.038 8.3E-07 53.7 6.1 52 69-122 208-260 (489)
86 PF13833 EF-hand_8: EF-hand do 95.2 0.026 5.7E-07 38.3 3.6 26 62-87 27-52 (54)
87 KOG0031|consensus 95.1 1 2.3E-05 38.3 13.4 113 22-164 45-164 (171)
88 KOG0028|consensus 94.9 0.21 4.6E-06 42.5 8.7 93 63-169 36-137 (172)
89 KOG4223|consensus 94.8 0.17 3.8E-06 47.4 8.8 92 65-167 118-230 (325)
90 PF13202 EF-hand_5: EF hand; P 94.7 0.037 8E-07 32.4 2.8 24 98-121 1-25 (25)
91 PF09279 EF-hand_like: Phospho 94.6 0.071 1.5E-06 39.7 4.9 61 98-167 2-71 (83)
92 smart00054 EFh EF-hand, calciu 94.5 0.064 1.4E-06 30.0 3.5 26 63-88 3-28 (29)
93 KOG0377|consensus 94.2 0.11 2.4E-06 50.8 6.3 63 64-164 551-614 (631)
94 KOG0041|consensus 94.1 0.15 3.3E-06 45.0 6.4 63 62-124 101-164 (244)
95 KOG0751|consensus 93.9 0.58 1.3E-05 46.5 10.6 59 63-123 77-136 (694)
96 cd05024 S-100A10 S-100A10: A s 93.7 0.14 3.1E-06 39.6 5.0 59 99-163 11-74 (91)
97 KOG0030|consensus 93.0 0.68 1.5E-05 38.7 8.1 102 4-118 29-146 (152)
98 KOG0031|consensus 92.6 0.49 1.1E-05 40.2 6.9 89 64-165 36-129 (171)
99 PF03107 C1_2: C1 domain; Int 92.6 0.086 1.9E-06 32.2 1.8 27 192-220 2-29 (30)
100 KOG0038|consensus 92.1 0.69 1.5E-05 39.1 7.1 62 60-121 108-175 (189)
101 PF10591 SPARC_Ca_bdg: Secrete 92.0 0.23 4.9E-06 39.8 4.1 57 60-118 54-111 (113)
102 PF12763 EF-hand_4: Cytoskelet 91.2 0.6 1.3E-05 36.9 5.6 59 64-125 14-73 (104)
103 PRK12309 transaldolase/EF-hand 91.0 0.53 1.1E-05 45.7 6.2 41 49-91 348-388 (391)
104 KOG2643|consensus 91.0 0.52 1.1E-05 46.1 6.0 58 65-124 238-315 (489)
105 KOG0030|consensus 90.3 5.1 0.00011 33.6 10.4 116 23-165 25-151 (152)
106 smart00054 EFh EF-hand, calciu 89.4 0.41 8.9E-06 26.4 2.5 26 98-123 2-28 (29)
107 KOG2562|consensus 87.4 5.6 0.00012 39.3 10.2 138 23-178 188-360 (493)
108 PF12763 EF-hand_4: Cytoskelet 84.4 4.1 8.9E-05 32.1 6.5 51 36-89 13-72 (104)
109 PF10591 SPARC_Ca_bdg: Secrete 83.3 0.23 5.1E-06 39.7 -1.1 60 93-161 51-112 (113)
110 KOG4223|consensus 81.6 3.8 8.3E-05 38.6 6.0 113 61-174 78-200 (325)
111 KOG0377|consensus 81.1 4.2 9E-05 40.2 6.3 29 63-91 590-618 (631)
112 PLN02952 phosphoinositide phos 77.1 10 0.00022 39.0 7.9 89 73-166 13-111 (599)
113 KOG0169|consensus 76.1 32 0.0007 36.0 11.2 127 30-167 133-276 (746)
114 COG1379 PHP family phosphoeste 75.2 3.3 7.2E-05 39.3 3.6 93 116-213 175-273 (403)
115 PF14788 EF-hand_10: EF hand; 73.4 14 0.00031 25.5 5.5 26 61-86 22-47 (51)
116 PF07975 C1_4: TFIIH C1-like d 72.3 2.6 5.6E-05 29.2 1.6 28 192-221 1-36 (51)
117 PF00643 zf-B_box: B-box zinc 71.9 5.7 0.00012 25.4 3.2 38 190-237 3-40 (42)
118 PF02207 zf-UBR: Putative zinc 71.6 2.6 5.6E-05 30.7 1.6 34 204-242 12-48 (71)
119 KOG3555|consensus 71.3 4.6 0.0001 38.6 3.6 95 96-213 250-352 (434)
120 KOG1029|consensus 70.1 9.8 0.00021 40.1 5.8 93 54-150 189-282 (1118)
121 KOG0041|consensus 69.2 6.8 0.00015 34.9 4.0 80 77-164 81-162 (244)
122 PF12767 SAGA-Tad1: Transcript 68.9 6.8 0.00015 35.5 4.1 51 73-125 5-55 (252)
123 COG5259 RSC8 RSC chromatin rem 67.6 2.9 6.3E-05 41.3 1.5 41 188-229 222-262 (531)
124 KOG0039|consensus 65.6 6.3 0.00014 40.8 3.6 50 74-129 2-51 (646)
125 KOG1778|consensus 64.5 3.4 7.3E-05 39.1 1.2 35 188-224 167-201 (319)
126 PF05517 p25-alpha: p25-alpha 64.4 22 0.00047 29.9 6.0 71 5-90 1-71 (154)
127 PF14788 EF-hand_10: EF hand; 63.8 20 0.00042 24.8 4.6 48 76-124 1-50 (51)
128 PF00427 PBS_linker_poly: Phyc 61.5 22 0.00048 29.3 5.4 52 24-87 3-55 (131)
129 PF13842 Tnp_zf-ribbon_2: DDE_ 60.6 6 0.00013 24.5 1.5 27 192-219 2-29 (32)
130 PF04876 Tenui_NCP: Tenuivirus 59.0 28 0.00062 29.5 5.6 70 53-129 76-145 (175)
131 PF14658 EF-hand_9: EF-hand do 57.4 54 0.0012 23.8 6.2 51 23-87 12-63 (66)
132 KOG0040|consensus 56.9 44 0.00095 38.1 8.0 92 29-122 2222-2323(2399)
133 KOG4403|consensus 55.0 9.8 0.00021 37.4 2.6 56 72-128 40-101 (575)
134 KOG4251|consensus 54.6 16 0.00034 33.6 3.7 57 61-121 237-307 (362)
135 KOG4065|consensus 54.1 72 0.0016 26.1 7.0 63 21-85 79-142 (144)
136 PF01023 S_100: S-100/ICaBP ty 50.5 18 0.00038 24.0 2.6 25 99-123 9-36 (44)
137 PF00130 C1_1: Phorbol esters/ 47.8 14 0.0003 24.7 1.8 24 189-213 10-36 (53)
138 PF14445 Prok-RING_2: Prokaryo 45.8 3.5 7.5E-05 28.5 -1.4 32 190-221 7-48 (57)
139 KOG1356|consensus 45.7 12 0.00027 39.5 1.8 97 157-257 197-314 (889)
140 PF03811 Zn_Tnp_IS1: InsA N-te 43.8 17 0.00036 23.2 1.6 23 190-212 5-36 (36)
141 PLN02222 phosphoinositide phos 43.6 45 0.00097 34.2 5.4 61 97-167 26-92 (581)
142 TIGR00622 ssl1 transcription f 43.5 20 0.00043 28.9 2.3 29 191-221 56-96 (112)
143 PF14206 Cys_rich_CPCC: Cystei 42.7 11 0.00023 28.4 0.6 27 191-224 2-30 (78)
144 PLN02223 phosphoinositide phos 42.0 36 0.00077 34.6 4.3 70 94-166 14-93 (537)
145 KOG2807|consensus 41.9 11 0.00025 35.6 0.8 30 191-221 331-360 (378)
146 KOG2557|consensus 41.4 93 0.002 30.2 6.8 55 74-128 72-127 (427)
147 PF05042 Caleosin: Caleosin re 40.5 75 0.0016 27.5 5.5 57 62-118 98-161 (174)
148 KOG4064|consensus 39.6 45 0.00097 28.4 3.9 97 24-159 10-109 (196)
149 TIGR01053 LSD1 zinc finger dom 39.2 26 0.00057 21.5 1.9 24 190-213 1-27 (31)
150 PF01756 ACOX: Acyl-CoA oxidas 39.2 31 0.00067 29.5 3.1 60 109-169 103-168 (187)
151 KOG0046|consensus 37.8 96 0.0021 31.6 6.5 73 3-91 16-89 (627)
152 KOG1265|consensus 37.7 1.4E+02 0.003 32.4 7.9 111 82-197 210-337 (1189)
153 PF05517 p25-alpha: p25-alpha 37.1 70 0.0015 26.8 4.8 59 98-164 1-68 (154)
154 smart00396 ZnF_UBR1 Putative z 36.9 39 0.00084 24.6 2.9 30 206-240 14-46 (71)
155 PTZ00463 histone H2B; Provisio 35.1 77 0.0017 25.7 4.4 62 32-95 28-100 (117)
156 PLN00158 histone H2B; Provisio 34.9 76 0.0016 25.7 4.4 60 34-95 29-99 (116)
157 KOG4578|consensus 33.9 31 0.00068 32.9 2.4 59 98-166 335-399 (421)
158 PF08726 EFhand_Ca_insen: Ca2+ 33.5 38 0.00082 24.8 2.3 27 95-121 5-31 (69)
159 cd00029 C1 Protein kinase C co 32.4 23 0.0005 23.0 0.9 22 190-212 11-35 (50)
160 smart00427 H2B Histone H2B. 31.4 89 0.0019 24.1 4.1 24 72-95 50-73 (89)
161 PF12872 OST-HTH: OST-HTH/LOTU 30.0 1.3E+02 0.0028 21.1 4.7 36 50-86 22-57 (74)
162 PF09851 SHOCT: Short C-termin 29.3 75 0.0016 19.3 2.8 29 95-125 2-30 (31)
163 PLN02230 phosphoinositide phos 29.2 71 0.0015 32.9 4.2 69 94-166 27-103 (598)
164 KOG1029|consensus 29.2 1.6E+02 0.0034 31.6 6.5 51 38-88 18-77 (1118)
165 PF04699 P16-Arc: ARP2/3 compl 29.1 43 0.00093 28.3 2.2 47 24-77 96-142 (152)
166 smart00109 C1 Protein kinase C 28.8 28 0.0006 22.3 0.8 21 190-211 11-33 (49)
167 PF00404 Dockerin_1: Dockerin 28.8 35 0.00077 19.1 1.1 15 70-84 1-15 (21)
168 PF00412 LIM: LIM domain; Int 28.4 23 0.0005 23.8 0.4 37 183-222 17-55 (58)
169 PF12760 Zn_Tnp_IS1595: Transp 27.7 42 0.0009 22.1 1.6 23 190-212 18-44 (46)
170 KOG0046|consensus 27.6 1.5E+02 0.0033 30.2 6.0 59 63-122 22-84 (627)
171 KOG4065|consensus 27.5 2.3E+02 0.005 23.2 6.0 15 148-162 128-142 (144)
172 KOG4251|consensus 27.2 68 0.0015 29.6 3.3 56 63-118 104-163 (362)
173 PF09279 EF-hand_like: Phospho 27.1 2.4E+02 0.0052 20.3 5.8 59 64-123 4-69 (83)
174 TIGR01562 FdhE formate dehydro 26.2 90 0.002 29.4 4.0 77 141-223 135-233 (305)
175 PLN02228 Phosphoinositide phos 25.4 1.3E+02 0.0027 30.9 5.2 64 93-166 21-93 (567)
176 KOG3380|consensus 25.1 76 0.0017 26.8 3.0 61 8-77 82-142 (152)
177 PRK04351 hypothetical protein; 24.5 79 0.0017 26.5 3.0 50 157-213 86-140 (149)
178 cd07313 terB_like_2 tellurium 24.2 3.1E+02 0.0067 20.5 7.3 56 64-121 41-98 (104)
179 KOG3555|consensus 23.9 70 0.0015 30.8 2.8 84 28-116 206-303 (434)
180 PRK11426 hypothetical protein; 23.9 4.2E+02 0.0091 21.9 7.8 71 5-79 32-112 (132)
181 PF05290 Baculo_IE-1: Baculovi 22.7 36 0.00078 28.3 0.6 47 190-240 80-127 (140)
182 CHL00091 apcE phycobillisome l 22.0 2.1E+02 0.0045 30.8 6.1 64 24-102 710-773 (877)
183 PF09862 DUF2089: Protein of u 21.4 57 0.0012 26.2 1.5 29 193-222 1-34 (113)
184 PRK04860 hypothetical protein; 21.3 96 0.0021 26.4 2.9 51 156-213 87-151 (160)
185 PF07754 DUF1610: Domain of un 21.1 71 0.0015 18.6 1.4 10 203-212 14-23 (24)
186 PF14513 DAG_kinase_N: Diacylg 20.5 2.1E+02 0.0045 23.8 4.7 27 5-31 27-54 (138)
187 PF08209 Sgf11: Sgf11 (transcr 20.2 37 0.00081 21.3 0.2 16 190-206 4-19 (33)
No 1
>KOG4301|consensus
Probab=100.00 E-value=1.3e-68 Score=487.17 Aligned_cols=254 Identities=46% Similarity=0.916 Sum_probs=249.9
Q ss_pred CcchHHHHHHHHHHcCCCCcCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcCCCCCeeehH
Q psy4949 1 HTIDIWNVIEAFRENGLNAIELQSDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVESLGRIRVF 80 (275)
Q Consensus 1 hlvd~~~~~e~f~~~~l~~~~~~~~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~ 80 (275)
||||||||||||||||||.++++++|++++|+++++.+|+++||++|++++||++..+.+++++++.+||+.+.|++.++
T Consensus 51 hlvdiwnmieafren~ln~l~~~tei~~srlea~lstif~qlnkrL~ss~~id~e~sislllaflLaA~ds~~~g~~~vf 130 (434)
T KOG4301|consen 51 HLVDIWNMIEAFRENGLNNLDPNTEINVSRLEAVLSTIFYQLNKRLPSSHQIDVEQSISLLLAFLLAAEDSEGQGKQQVF 130 (434)
T ss_pred hhHHHHHHHHHHHhccccCCCCcchhhhhHHHHHHHHHHHhhhccCcccccccHHHHHHHHHHHHHhhcCccCCCCceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCChhhHHHHhchhhccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcCCCcccHHHHH
Q psy4949 81 SIKVALATMCSGKLMDKLRYIFSQLCDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSGNGKVTVNDFM 160 (275)
Q Consensus 81 ef~~aLs~Lc~G~l~dKlr~~F~ly~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~d~~Is~~eFl 160 (275)
+.+++|+++|+|++.||+||+|++.+|++|-+...++..+|++++++|.++.|.++||++|.+++.||.++.+++++.|+
T Consensus 131 avkialatlc~gk~~dklryIfs~isds~gim~~i~~~~fl~evlslpT~v~e~psfg~te~~a~~cf~qqrKv~Ln~fl 210 (434)
T KOG4301|consen 131 AVKIALATLCGGKIKDKLRYIFSLISDSRGIMQEIQRDQFLHEVLSLPTAVFEGPSFGYTELSARLCFLQQRKVELNQFL 210 (434)
T ss_pred cchhhhhhhccchHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHcCCchhhcCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCCcccchhhhhhcccccCCCCcCcccCcCCCCccccceeeeccCCCCccchhhhhCCcccCCCCCCCceeeec
Q psy4949 161 DTMMSEPGPACLIWLPLLHRLTAVESTSHPIACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEVKENH 240 (275)
Q Consensus 161 ~~~~~d~~Pq~lvWL~~~~r~~~~~~~~h~~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~g~~~~~H~~~H~m~e~~ 240 (275)
+.+++||+|+|++|||++||++.++++.|++.|+.|...+|.|+||+|..|.||.+|+.|||+|..++.|++.|.|+||+
T Consensus 211 dtl~sdp~p~cl~wlpLmhrla~v~nv~hpv~cs~c~srs~~gfry~cq~C~nyqlcq~cfwrG~~g~~hsnqh~mke~S 290 (434)
T KOG4301|consen 211 DTLMSDPPPQCLVWLPLMHRLATVENVFHPVECSYCRSRSMMGFRYRCQQCHNYQLCQQCFWRGHAGGSHSNQHQMKEYS 290 (434)
T ss_pred HHHhcCCCchhHHHHHHHHHHHhhcccCCCccCcceecccccchhhhHhhcCCccccchhhccccCCCCcchHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChhhhhhhhHH
Q psy4949 241 PVNKLVTRYANHFA 254 (275)
Q Consensus 241 ~~~~~~~~~~~~~~ 254 (275)
+|++|.+.+...-.
T Consensus 291 s~ksp~k~Lv~ais 304 (434)
T KOG4301|consen 291 SWKSPAKKLVHAIS 304 (434)
T ss_pred cccChHHHHHHHhh
Confidence 99999999865443
No 2
>KOG4286|consensus
Probab=100.00 E-value=2.7e-60 Score=464.96 Aligned_cols=265 Identities=27% Similarity=0.542 Sum_probs=248.4
Q ss_pred cchHHHHHHHHHHcCCCCcCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcCCCCCeeehHH
Q psy4949 2 TIDIWNVIEAFRENGLNAIELQSDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVESLGRIRVFS 81 (275)
Q Consensus 2 lvd~~~~~e~f~~~~l~~~~~~~~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~e 81 (275)
||++..+.+||.+|.|++. +..|++.++.++|..+|+++..+.|. +++++.++++++||++|+||+.|+|+|+++|
T Consensus 416 lv~ltl~l~if~~h~l~~~--~e~m~~~~~i~~L~~~y~~l~e~~g~--~v~v~l~vD~~lN~llNvyD~~R~g~irvls 491 (966)
T KOG4286|consen 416 LLSLSLALDALDQHNLKQN--DQPMDILQIINCLTTIYDRLEQEHGN--LVNVPLCVDMCLNWLLNVYDTGRTGRIRVLS 491 (966)
T ss_pred cccHHHHHHHHHHhccccc--CcCCCHHHHHHHHHHHHHHHHHHccc--ccccchHHHHHHHHHHHhcccCCCcceEEee
Confidence 7899999999999999986 67899999999999999999999875 8889999999999999999999999999999
Q ss_pred HHHHHHHhcCCChhhHHHHhchhhccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCc--hHHHhhhhcCC---CcccH
Q psy4949 82 IKVALATMCSGKLMDKLRYIFSQLCDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYT--DTLAQEIFSGN---GKVTV 156 (275)
Q Consensus 82 f~~aLs~Lc~G~l~dKlr~~F~ly~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~--e~~v~~cF~~d---~~Is~ 156 (275)
||+|+++||++.++|||+|+|++.+|+.-.+++..++.+|.++++||+.+||.++||++ |++|++||+.. +.|+.
T Consensus 492 ~ki~~i~lck~~leek~~ylF~~vA~~~sq~~q~~l~lLL~dliqipr~lGE~aAfGgsNvepsvrsCF~~v~~~pei~~ 571 (966)
T KOG4286|consen 492 FKIGIISLCKAHLEDKYRYLFKQVASSTSQCDQRRLGLLLHDLIQIPRQLGEVAAFGGSNIEPSVRSCFQFVNNKPEIEA 571 (966)
T ss_pred ehhhHHHHhcchhHHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHHHHhHHHhhcCCCCChHHHHHHHhcCCCCcchH
Confidence 99999999999999999999999987777777999999999999999999999999997 89999999984 68999
Q ss_pred HHHHHHHhcCCCCcccchhhhhhcccccCCCCcCcccCcCCCCccccceeeeccCCCCccchhhhhCCcccCCCCCCCce
Q psy4949 157 NDFMDTMMSEPGPACLIWLPLLHRLTAVESTSHPIACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEV 236 (275)
Q Consensus 157 ~eFl~~~~~d~~Pq~lvWL~~~~r~~~~~~~~h~~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~g~~~~~H~~~H~m 236 (275)
.+|++|+ ..+||+|||||++||+..+|.++|..+|.+|+++||+|+||||++|+|||+|+.||..|+++++|+.+|||
T Consensus 572 ~~f~dw~--~~epqsmVwL~vlhRv~~aE~~kH~~kCniCk~~pIvG~RyR~l~~fn~dlCq~CF~sgraak~hk~~~pM 649 (966)
T KOG4286|consen 572 ALFLDWM--RLEPQSMVWLPVLHRVAAAETAKHQAKCNICKECPIIGFRYRSLKHFNYDICQSCFFSGRAAKGHKMHYPM 649 (966)
T ss_pred HHHHHHh--ccCcchhhHHHHHHHHHHHHHHHhhhhcchhhhCccceeeeeehhhcChhHHhhHhhhcccccCCCCCCCc
Confidence 9999999 45699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCChhhhhhhhHHHHHhhhcc------cceeceeecc
Q psy4949 237 KENHPVNKLVTRYANHFAVFRKKLKP------TIYHGFLRSQ 272 (275)
Q Consensus 237 ~e~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~ 272 (275)
.|||++..+..+..+|-++++||... .-..||+.-|
T Consensus 650 ~Ey~~~tts~~d~rdfak~L~nkfr~~~~~a~~~rrGylpvq 691 (966)
T KOG4286|consen 650 VEYCTPTTSGEDVRDFAKVLKNKFRTKRYFAKHPRRGYLPVQ 691 (966)
T ss_pred eeeeCCCCChhhHHHHHHHHHhhhccchhhhcccccCCccch
Confidence 99999999999998888899887774 3456777655
No 3
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=99.96 E-value=1e-29 Score=195.24 Aligned_cols=87 Identities=47% Similarity=0.797 Sum_probs=73.9
Q ss_pred hhhHHHHhchhhccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcC---CCcccHHHHHHHHhcCCCCc
Q psy4949 94 LMDKLRYIFSQLCDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG---NGKVTVNDFMDTMMSEPGPA 170 (275)
Q Consensus 94 l~dKlr~~F~ly~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~---d~~Is~~eFl~~~~~d~~Pq 170 (275)
|+|||||+|++++|+||+|++++|+.+|+++++||+++||.++||+.|++|++||++ ..+|++++|++|+++| ||
T Consensus 1 L~dKyRylFslisd~~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~~~~~I~~~~Fl~wl~~e--Pq 78 (90)
T PF09069_consen 1 LEDKYRYLFSLISDSNGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQLSPKITENQFLDWLMSE--PQ 78 (90)
T ss_dssp HHHHHHHHHHHHS-TTS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTTT-S-B-HHHHHHHHHT----T
T ss_pred ChHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccCCCCccCHHHHHHHHHhC--CC
Confidence 689999999999999999999999999999999999999999999999999999998 6899999999999987 89
Q ss_pred ccchhhhhhccc
Q psy4949 171 CLIWLPLLHRLT 182 (275)
Q Consensus 171 ~lvWL~~~~r~~ 182 (275)
++||||++||++
T Consensus 79 ~lVWLP~lhRlA 90 (90)
T PF09069_consen 79 SLVWLPTLHRLA 90 (90)
T ss_dssp TTTHHHHHHHHH
T ss_pred eeeHHHHHhhcC
Confidence 999999999985
No 4
>KOG0044|consensus
Probab=99.94 E-value=2.3e-26 Score=199.94 Aligned_cols=138 Identities=17% Similarity=0.328 Sum_probs=117.8
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHH------------HHHHHHHHHhhcCCCCCeeehHHHHHHHHHhcC
Q psy4949 24 SDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLS------------GLLLNWLLSAYSVESLGRIRVFSIKVALATMCS 91 (275)
Q Consensus 24 ~~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~------------~l~~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~ 91 (275)
+..+..+ |+.||++|.++||+ |.++.+++. +.++.+||++||.|++|.|+|.||++|||++++
T Consensus 21 t~f~~~e----i~~~Yr~Fk~~cP~-G~~~~~~F~~i~~~~fp~gd~~~y~~~vF~~fD~~~dg~i~F~Efi~als~~~r 95 (193)
T KOG0044|consen 21 TKFSKKE----IQQWYRGFKNECPS-GRLTLEEFREIYASFFPDGDASKYAELVFRTFDKNKDGTIDFLEFICALSLTSR 95 (193)
T ss_pred cCCCHHH----HHHHHHHhcccCCC-CccCHHHHHHHHHHHCCCCCHHHHHHHHHHHhcccCCCCcCHHHHHHHHHHHcC
Confidence 3455556 99999999999998 677766544 456777999999999999999999999999999
Q ss_pred CChhhHHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcC-----CCcccHHHHHHHHhc
Q psy4949 92 GKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG-----NGKVTVNDFMDTMMS 165 (275)
Q Consensus 92 G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~-----d~~Is~~eFl~~~~~ 165 (275)
|++++|++|+|+|| .|+||+|||.||..+++++++|.....-...-..+++.|+.+|.+ ||.||++||++++.+
T Consensus 96 Gt~eekl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~~ 175 (193)
T KOG0044|consen 96 GTLEEKLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCKA 175 (193)
T ss_pred CcHHHHhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhhh
Confidence 99999999999999 799999999999999999999976422111223348899999997 799999999999998
Q ss_pred C
Q psy4949 166 E 166 (275)
Q Consensus 166 d 166 (275)
|
T Consensus 176 d 176 (193)
T KOG0044|consen 176 D 176 (193)
T ss_pred C
Confidence 8
No 5
>PF09068 EF-hand_2: EF hand; InterPro: IPR015153 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=99.89 E-value=2.9e-23 Score=169.89 Aligned_cols=89 Identities=55% Similarity=0.863 Sum_probs=72.2
Q ss_pred CcchHHHHHHHHHHcCCCCcCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCccC---hHHHHHHHHHHHHHhhcCCCCCee
Q psy4949 1 HTIDIWNVIEAFRENGLNAIELQSDVSVARFETLLSSLYHNLNKRLPVSQQVH---VEVLSGLLLNWLLSAYSVESLGRI 77 (275)
Q Consensus 1 hlvd~~~~~e~f~~~~l~~~~~~~~l~~~~l~~~L~~lY~~~~k~~P~~~~v~---~~~~~~l~~~~lf~~fD~~~~G~I 77 (275)
|+||+|+|+|+|++|||++. ++..|+++|++++|++||++++++.|+..+++ ++.|+++++|||+++||++|+|+|
T Consensus 36 ~lv~l~~v~~~f~~~~l~~~-~d~~l~v~~l~~~L~~iy~~l~~~~p~~~~i~~~~v~~a~~L~ln~Ll~vyD~~rtG~I 114 (127)
T PF09068_consen 36 DLVDLSNVIEAFREHGLNQS-NDSSLSVSQLETLLSSIYEFLNKRLPTLHQIPSRPVDLAVDLLLNWLLNVYDSQRTGKI 114 (127)
T ss_dssp GG--HHHHHHHHHHTT---T--TSEEEHHHHHHHHHHHHHHHHHHSTTS--HH-----HHHHHHHHHHHHHH-TT--SEE
T ss_pred eeeeHHHHHHHHHHcCCCcc-cCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCchhHHHHHHHHHHHHHHHhCCCCCCee
Confidence 79999999999999999998 35569999999999999999999999865555 679999999999999999999999
Q ss_pred ehHHHHHHHHHhc
Q psy4949 78 RVFSIKVALATMC 90 (275)
Q Consensus 78 ~~~ef~~aLs~Lc 90 (275)
+|+|||+||++||
T Consensus 115 ~vls~KvaL~~Lc 127 (127)
T PF09068_consen 115 RVLSFKVALITLC 127 (127)
T ss_dssp EHHHHHHHHHHTS
T ss_pred ehhHHHHHHHHhC
Confidence 9999999999998
No 6
>cd02334 ZZ_dystrophin Zinc finger, ZZ type. Zinc finger present in dystrophin and dystrobrevin. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dystrophin attaches actin filaments to an integral membrane glycoprotein complex in muscle cells. The ZZ domain in dystrophin has been shown to be essential for binding to the membrane protein beta-dystroglycan.
Probab=99.82 E-value=6.3e-21 Score=130.84 Aligned_cols=49 Identities=45% Similarity=0.992 Sum_probs=47.8
Q ss_pred cccCcCCCCccccceeeeccCCCCccchhhhhCCcccCCCCCCCceeee
Q psy4949 191 IACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEVKEN 239 (275)
Q Consensus 191 ~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~g~~~~~H~~~H~m~e~ 239 (275)
+.||+|++.||.|.||||++|.|||||+.||+.|.+++.|+.+|||+||
T Consensus 1 ~~Cd~C~~~pi~g~RykC~~C~d~DLC~~Cf~~g~~~~~H~~~Hp~~e~ 49 (49)
T cd02334 1 AKCNICKEFPITGFRYRCLKCFNYDLCQSCFFSGRTSKSHKNSHPMKEY 49 (49)
T ss_pred CCCCCCCCCCceeeeEECCCCCCcCchHHHHhCCCcCCCCCCCCCeecC
Confidence 5899999999999999999999999999999999999999999999997
No 7
>cd02345 ZZ_dah Zinc finger, ZZ type. Zinc finger present in Drosophila dah and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Dah (discontinuous actin hexagon) is a membrane associated protein essential for cortical furrow formation in Drosophila.
Probab=99.69 E-value=1.7e-17 Score=114.05 Aligned_cols=49 Identities=31% Similarity=0.790 Sum_probs=46.6
Q ss_pred cccCcCCCCccccceeeeccCCCCccchhhhhCCcccCCCCCCCceeee
Q psy4949 191 IACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEVKEN 239 (275)
Q Consensus 191 ~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~g~~~~~H~~~H~m~e~ 239 (275)
+.|++|+..||.|.||+|++|.|||||++||+.|.+++.|+.+|||+|.
T Consensus 1 ~~C~~C~~~~i~g~R~~C~~C~dydLC~~Cf~~~~~~~~H~~~H~~~~~ 49 (49)
T cd02345 1 LSCSACRKQDISGIRFPCQVCRDYSLCLGCYTKGRETKRHNSLHIMYEL 49 (49)
T ss_pred CcCCCCCCCCceEeeEECCCCCCcCchHHHHhCCCcCCCCCCCCCcccC
Confidence 4799999999999999999999999999999999999999999999873
No 8
>cd02343 ZZ_EF Zinc finger, ZZ type. Zinc finger present in proteins with an EF_hand motif. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=99.68 E-value=2.2e-17 Score=112.17 Aligned_cols=47 Identities=36% Similarity=0.861 Sum_probs=44.3
Q ss_pred cccCcCCCCccccceeeeccCCCCccchhhhhCCcccCCCCCCCceee
Q psy4949 191 IACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEVKE 238 (275)
Q Consensus 191 ~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~g~~~~~H~~~H~m~e 238 (275)
+.||+|.. .+.|.||||++|+|||||++||+.|.+++.|+.+|||+-
T Consensus 1 i~CdgC~~-~~~~~RykCl~C~d~DlC~~Cf~~g~~~~~H~~~Hpm~~ 47 (48)
T cd02343 1 ISCDGCDE-IAPWHRYRCLQCTDMDLCKTCFLGGVKPEGHEDDHEMVN 47 (48)
T ss_pred CCCCCCCC-cCCCceEECCCCCCchhHHHHHhCCccCCCCCCCCCccc
Confidence 57999998 689999999999999999999999999999999999974
No 9
>cd02338 ZZ_PCMF_like Zinc finger, ZZ type. Zinc finger present in potassium channel modulatory factor (PCMF) 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Human potassium channel modulatory factor 1 or FIGC has been shown to possess intrinsic E3 ubiquitin ligase activity and to promote ubiquitination.
Probab=99.67 E-value=4.7e-17 Score=111.89 Aligned_cols=48 Identities=33% Similarity=0.962 Sum_probs=45.9
Q ss_pred cccCcCCCCccccceeeeccCCCCccchhhhhCCcccCCCCCCCceee
Q psy4949 191 IACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEVKE 238 (275)
Q Consensus 191 ~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~g~~~~~H~~~H~m~e 238 (275)
+.||+|++.||.|.||+|++|.|||||++||+.|.+++.|+.+|||+.
T Consensus 1 i~C~~C~~~~i~g~R~~C~~C~d~dlC~~Cf~~~~~~~~H~~~H~~~~ 48 (49)
T cd02338 1 VSCDGCGKSNFTGRRYKCLICYDYDLCADCYDSGVTTERHLFDHPMQC 48 (49)
T ss_pred CCCCCCcCCCcEEeeEEeCCCCCCccchhHHhCCCcCCCCCCCCCEEE
Confidence 579999988999999999999999999999999999999999999975
No 10
>cd02339 ZZ_Mind_bomb Zinc finger, ZZ type. Zinc finger present in Drosophila Mind bomb (D-mib) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Mind bomb is an E3 ubiqitin ligase that has been shown to regulate signaling by the Notch ligand Delta in Drosophila melanogaster.
Probab=99.63 E-value=2.1e-16 Score=106.59 Aligned_cols=45 Identities=36% Similarity=1.036 Sum_probs=41.8
Q ss_pred cccCcCCCCccccceeeeccCCCCccchhhhhCCcccCCCCCCCceeee
Q psy4949 191 IACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEVKEN 239 (275)
Q Consensus 191 ~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~g~~~~~H~~~H~m~e~ 239 (275)
+.||+|+..||.|.||||++|.|||||++||. .+.|+.+|||.+|
T Consensus 1 i~Cd~C~~~~i~G~RykC~~C~dyDLC~~C~~----~~~H~~~H~f~r~ 45 (45)
T cd02339 1 IICDTCRKQGIIGIRWKCAECPNYDLCTTCYH----GDKHDLEHRFYRY 45 (45)
T ss_pred CCCCCCCCCCcccCeEECCCCCCccchHHHhC----CCCCCCCCCEEeC
Confidence 57999999899999999999999999999996 4679999999986
No 11
>cd02344 ZZ_HERC2 Zinc finger, ZZ type. Zinc finger present in HERC2 and related proteins. HERC2 is a potential E3 ubiquitin protein ligase and/or guanine nucleotide exchange factor. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=99.61 E-value=5e-16 Score=104.54 Aligned_cols=44 Identities=32% Similarity=0.854 Sum_probs=40.2
Q ss_pred cccCcCCCCccccceeeeccCCCCccchhhhhCCcccCCCCCCCceee
Q psy4949 191 IACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEVKE 238 (275)
Q Consensus 191 ~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~g~~~~~H~~~H~m~e 238 (275)
|.||+|++.||.|.||||++|.|||||+.||.. +.|+..|++.+
T Consensus 1 V~Cd~C~~~pI~G~RykC~~C~dyDLC~~Cf~~----~~H~~~H~F~r 44 (45)
T cd02344 1 VTCDGCQMFPINGPRFKCRNCDDFDFCENCFKT----RKHNTRHTFGR 44 (45)
T ss_pred CCCCCCCCCCCccCeEECCCCCCccchHHhhCC----CCcCCCCceee
Confidence 689999999999999999999999999999965 57889998865
No 12
>cd02341 ZZ_ZZZ3 Zinc finger, ZZ type. Zinc finger present in ZZZ3 (ZZ finger containing 3) and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=99.58 E-value=1.4e-15 Score=103.99 Aligned_cols=45 Identities=36% Similarity=0.941 Sum_probs=42.0
Q ss_pred cccCcCCCCccccceeeeccCC--CCccchhhhhCCcccCCCCCCCceee
Q psy4949 191 IACDACGRANFVGFRYRCAKCG--NFQMCQECFWWGRVSGGHNLEHEVKE 238 (275)
Q Consensus 191 ~~Cd~C~~~pI~G~RykC~~C~--~~dLC~~C~~~g~~~~~H~~~H~m~e 238 (275)
..||+|++.||.|.||+|++|. |||||+.||++|. .|+.+|+|..
T Consensus 1 y~Cd~C~~~pI~G~R~~C~~C~~~d~DlC~~C~~~~~---~H~~~H~~~~ 47 (48)
T cd02341 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCVVKGE---SHQEDHWLVK 47 (48)
T ss_pred CCCCCCCCCccccceEECCCCCCCCCccCHHHHhCcC---CCCCCCceee
Confidence 4799999999999999999999 9999999999876 8999999975
No 13
>cd02340 ZZ_NBR1_like Zinc finger, ZZ type. Zinc finger present in Drosophila ref(2)P, NBR1, Human sequestosome 1 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. Drosophila ref(2)P appears to control the multiplication of sigma rhabdovirus. NBR1 (Next to BRCA1 gene 1 protein) interacts with fasciculation and elongation protein zeta-1 (FEZ1) and calcium and integrin binding protein (CIB), and may function in cell signalling pathways. Sequestosome 1 is a phosphotyrosine independent ligand for the Lck SH2 domain and binds noncovalently to ubiquitin via its UBA domain.
Probab=99.55 E-value=2.9e-15 Score=100.23 Aligned_cols=42 Identities=36% Similarity=0.909 Sum_probs=38.8
Q ss_pred cccCcCCCCccccceeeeccCCCCccchhhhhCCcccCCCCCCCceee
Q psy4949 191 IACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEVKE 238 (275)
Q Consensus 191 ~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~g~~~~~H~~~H~m~e 238 (275)
+.||+|+. ||.|.||+|++|+|||||+.||..+ .| ..|||..
T Consensus 1 v~Cd~C~~-~i~G~ry~C~~C~d~dLC~~C~~~~----~H-~~H~f~~ 42 (43)
T cd02340 1 VICDGCQG-PIVGVRYKCLVCPDYDLCESCEAKG----VH-PEHAMLK 42 (43)
T ss_pred CCCCCCCC-cCcCCeEECCCCCCccchHHhhCcC----CC-CCCCEEe
Confidence 58999998 9999999999999999999999765 78 9999975
No 14
>cd02335 ZZ_ADA2 Zinc finger, ZZ type. Zinc finger present in ADA2, a putative transcriptional adaptor, and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding.
Probab=99.54 E-value=5.6e-15 Score=101.58 Aligned_cols=47 Identities=34% Similarity=0.774 Sum_probs=44.8
Q ss_pred ccCcCCCCccccceeeeccCCCCccchhhhhCCcccCCCCCCCceee
Q psy4949 192 ACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEVKE 238 (275)
Q Consensus 192 ~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~g~~~~~H~~~H~m~e 238 (275)
.||+|...++.|.||+|++|.|||||++||+.|.+++.|+.+|+|+-
T Consensus 2 ~Cd~C~~~~~~g~r~~C~~C~d~dLC~~Cf~~g~~~~~H~~~H~~~~ 48 (49)
T cd02335 2 HCDYCSKDITGTIRIKCAECPDFDLCLECFSAGAEIGKHRNDHNYRV 48 (49)
T ss_pred CCCCcCCCCCCCcEEECCCCCCcchhHHhhhCcCCCCCCCCCCCeEe
Confidence 69999998999999999999999999999999999999999999874
No 15
>PF00569 ZZ: Zinc finger, ZZ type; InterPro: IPR000433 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents ZZ-type zinc finger domains, named because of their ability to bind two zinc ions []. These domains contain 4-6 Cys residues that participate in zinc binding (plus additional Ser/His residues), including a Cys-X2-Cys motif found in other zinc finger domains. These zinc fingers are thought to be involved in protein-protein interactions. The structure of the ZZ domain shows that it belongs to the family of cross-brace zinc finger motifs that include the PHD, RING, and FYVE domains []. ZZ-type zinc finger domains are found in: Transcription factors P300 and CBP. Plant proteins involved in light responses, such as Hrb1. E3 ubiquitin ligases MEX and MIB2 (6.3.2 from EC). Dystrophin and its homologues. Single copies of the ZZ zinc finger occur in the transcriptional adaptor/coactivator proteins P300, in cAMP response element-binding protein (CREB)-binding protein (CBP) and ADA2. CBP provides several binding sites for transcriptional coactivators. The site of interaction with the tumour suppressor protein p53 and the oncoprotein E1A with CBP/P300 is a Cys-rich region that incorporates two zinc-binding motifs: ZZ-type and TAZ2-type. The ZZ-type zinc finger of CBP contains two twisted anti-parallel beta-sheets and a short alpha-helix, and binds two zinc ions []. One zinc ion is coordinated by four cysteine residues via 2 Cys-X2-Cys motifs, and the third zinc ion via a third Cys-X-Cys motif and a His-X-His motif. The first zinc cluster is strictly conserved, whereas the second zinc cluster displays variability in the position of the two His residues. In Arabidopsis thaliana (Mouse-ear cress), the hypersensitive to red and blue 1 (Hrb1) protein, which regulating both red and blue light responses, contains a ZZ-type zinc finger domain []. ZZ-type zinc finger domains have also been identified in the testis-specific E3 ubiquitin ligase MEX that promotes death receptor-induced apoptosis []. MEX has four putative zinc finger domains: one ZZ-type, one SWIM-type and two RING-type. The region containing the ZZ-type and RING-type zinc fingers is required for interaction with UbcH5a and MEX self-association, whereas the SWIM domain was critical for MEX ubiquitination. In addition, the Cys-rich domains of dystrophin, utrophin and an 87kDa post-synaptic protein contain a ZZ-type zinc finger with high sequence identity to P300/CBP ZZ-type zinc fingers. In dystrophin and utrophin, the ZZ-type zinc finger lies between a WW domain (flanked by and EF hand) and the C-terminal coiled-coil domain. Dystrophin is thought to act as a link between the actin cytoskeleton and the extracellular matrix, and perturbations of the dystrophin-associated complex, for example, between dystrophin and the transmembrane glycoprotein beta-dystroglycan, may lead to muscular dystrophy. Dystrophin and its autosomal homologue utrophin interact with beta-dystroglycan via their C-terminal regions, which are comprised of a WW domain, an EF hand domain and a ZZ-type zinc finger domain []. The WW domain is the primary site of interaction between dystrophin or utrophin and dystroglycan, while the EF hand and ZZ-type zinc finger domains stabilise and strengthen this interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1TOT_A 2DIP_A 2FC7_A 2E5R_A.
Probab=99.49 E-value=8.1e-15 Score=99.47 Aligned_cols=44 Identities=39% Similarity=1.028 Sum_probs=34.4
Q ss_pred CcCcccCcCCCCccccceeeeccCCCCccchhhhhCCcccCCCC
Q psy4949 188 SHPIACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHN 231 (275)
Q Consensus 188 ~h~~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~g~~~~~H~ 231 (275)
++++.||+|+..||.|.||+|++|+|||||+.||..|+.+..|+
T Consensus 2 h~~~~C~~C~~~~i~g~Ry~C~~C~d~dLC~~C~~~g~~~~~H~ 45 (46)
T PF00569_consen 2 HHGYTCDGCGTDPIIGVRYHCLVCPDYDLCEDCFSKGRHSHNHK 45 (46)
T ss_dssp CSSCE-SSS-SSSEESSEEEESSSSS-EEEHHHHHH--H-SSSS
T ss_pred CCCeECcCCCCCcCcCCeEECCCCCCCchhhHHHhCcCCCCCcC
Confidence 34899999999999999999999999999999999887766664
No 16
>cd02249 ZZ Zinc finger, ZZ type. Zinc finger present in dystrophin, CBP/p300 and many other proteins. The ZZ motif coordinates one or two zinc ions and most likely participates in ligand binding or molecular scaffolding. Many proteins containing ZZ motifs have other zinc-binding motifs as well, and the majority serve as scaffolds in pathways involving acetyltransferase, protein kinase, or ubiqitin-related activity. ZZ proteins can be grouped into the following functional classes: chromatin modifying, cytoskeletal scaffolding, ubiquitin binding or conjugating, and membrane receptor or ion-channel modifying proteins.
Probab=99.44 E-value=8.1e-14 Score=94.53 Aligned_cols=46 Identities=37% Similarity=0.951 Sum_probs=42.2
Q ss_pred cccCcCCCCccccceeeeccCCCCccchhhhhCCcccCCCCCCCceeee
Q psy4949 191 IACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEVKEN 239 (275)
Q Consensus 191 ~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~g~~~~~H~~~H~m~e~ 239 (275)
..||+|+. ||.|.||+|.+|.|||||+.||+.+. +.|+.+|+|.++
T Consensus 1 ~~C~~C~~-~i~g~r~~C~~C~d~dLC~~Cf~~~~--~~H~~~H~~~~~ 46 (46)
T cd02249 1 YSCDGCLK-PIVGVRYHCLVCEDFDLCSSCYAKGK--KGHPPDHSFTEI 46 (46)
T ss_pred CCCcCCCC-CCcCCEEECCCCCCCcCHHHHHCcCc--CCCCCCCCEeEC
Confidence 36999999 99999999999999999999999876 789999999763
No 17
>cd02342 ZZ_UBA_plant Zinc finger, ZZ type. Zinc finger present in plant ubiquitin-associated (UBA) proteins. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=99.43 E-value=5.2e-14 Score=92.90 Aligned_cols=33 Identities=33% Similarity=0.821 Sum_probs=31.5
Q ss_pred cccCcCCCCccccceeeeccCCCCccchhhhhC
Q psy4949 191 IACDACGRANFVGFRYRCAKCGNFQMCQECFWW 223 (275)
Q Consensus 191 ~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~ 223 (275)
+.||+|++.||.|.||||++|.|||||+.||.+
T Consensus 1 I~CDgCg~~PI~G~RykC~~C~dyDLC~~C~~~ 33 (43)
T cd02342 1 IQCDGCGVLPITGPRYKSKVKEDYDLCTICFSR 33 (43)
T ss_pred CCCCCCCCCcccccceEeCCCCCCccHHHHhhh
Confidence 579999999999999999999999999999975
No 18
>smart00291 ZnF_ZZ Zinc-binding domain, present in Dystrophin, CREB-binding protein. Putative zinc-binding domain present in dystrophin-like proteins, and CREB-binding protein/p300 homologues. The ZZ in dystrophin appears to bind calmodulin. A missense mutation of one of the conserved cysteines in dystrophin results in a patient with Duchenne muscular dystrophy [3].
Probab=99.39 E-value=2.4e-13 Score=91.35 Aligned_cols=43 Identities=42% Similarity=1.103 Sum_probs=39.3
Q ss_pred CcCcccCcCCCCccccceeeeccCCCCccchhhhhCCcccCCCC
Q psy4949 188 SHPIACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHN 231 (275)
Q Consensus 188 ~h~~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~g~~~~~H~ 231 (275)
.|.+.|++|+. ||.|.||+|+.|.|||||++||+.|++++.|.
T Consensus 2 ~~~~~C~~C~~-~i~g~ry~C~~C~d~dlC~~Cf~~~~~~~~h~ 44 (44)
T smart00291 2 HHSYSCDTCGK-PIVGVRYHCLVCPDYDLCQSCFAKGSAGGEHE 44 (44)
T ss_pred CCCcCCCCCCC-CCcCCEEECCCCCCccchHHHHhCcCcCCCCC
Confidence 46899999999 99999999999999999999999988777663
No 19
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=99.35 E-value=1.8e-11 Score=103.73 Aligned_cols=128 Identities=13% Similarity=0.197 Sum_probs=102.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCC-CCccChHHHHHH-----------HHHHHHHhhcCCCCCeeehHHHHHHHHHhc
Q psy4949 23 QSDVSVARFETLLSSLYHNLNKRLPV-SQQVHVEVLSGL-----------LLNWLLSAYSVESLGRIRVFSIKVALATMC 90 (275)
Q Consensus 23 ~~~l~~~~l~~~L~~lY~~~~k~~P~-~~~v~~~~~~~l-----------~~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc 90 (275)
...++..| ++.||++|....|+ +|.|+..+..++ .++-|++++|. ++|.|+|.+|..+++...
T Consensus 11 ~~~~t~~q----i~~lkeaF~l~D~d~~G~I~~~el~~ilr~lg~~~s~~ei~~l~~~~d~-~~~~idf~~Fl~~ms~~~ 85 (160)
T COG5126 11 FTQLTEEQ----IQELKEAFQLFDRDSDGLIDRNELGKILRSLGFNPSEAEINKLFEEIDA-GNETVDFPEFLTVMSVKL 85 (160)
T ss_pred cccCCHHH----HHHHHHHHHHhCcCCCCCCcHHHHHHHHHHcCCCCcHHHHHHHHHhccC-CCCccCHHHHHHHHHHHh
Confidence 45677778 88888888887772 356666655554 46679999999 999999999999999988
Q ss_pred -CCChhhHHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhc-----CCCcccHHHHHHHH
Q psy4949 91 -SGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFS-----GNGKVTVNDFMDTM 163 (275)
Q Consensus 91 -~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~-----~d~~Is~~eFl~~~ 163 (275)
++..++|++|+|++| .|++|.|+..+|..+|+. +||.. +++.|+..+. ++|.|+.++|.+.+
T Consensus 86 ~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~-------lge~~----~deev~~ll~~~d~d~dG~i~~~eF~~~~ 154 (160)
T COG5126 86 KRGDKEEELREAFKLFDKDHDGYISIGELRRVLKS-------LGERL----SDEEVEKLLKEYDEDGDGEIDYEEFKKLI 154 (160)
T ss_pred ccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHh-------hcccC----CHHHHHHHHHhcCCCCCceEeHHHHHHHH
Confidence 888999999999999 799999999999887773 45532 3555655544 37999999999988
Q ss_pred hcC
Q psy4949 164 MSE 166 (275)
Q Consensus 164 ~~d 166 (275)
+.+
T Consensus 155 ~~~ 157 (160)
T COG5126 155 KDS 157 (160)
T ss_pred hcc
Confidence 765
No 20
>KOG1280|consensus
Probab=99.30 E-value=1e-12 Score=121.41 Aligned_cols=56 Identities=27% Similarity=0.716 Sum_probs=53.2
Q ss_pred Cc-CcccCcCCCCccccceeeeccCCCCccchhhhhCCcccCCCCCCCceeeecCCC
Q psy4949 188 SH-PIACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEVKENHPVN 243 (275)
Q Consensus 188 ~h-~~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~g~~~~~H~~~H~m~e~~~~~ 243 (275)
.| +|.||||.+..+.|.||||+.|.|||||..||..|.+..-|..+|||+.+++..
T Consensus 5 rHe~v~CdgC~k~~~t~rrYkCL~C~DyDlC~sCyen~~tt~~H~~dHPmqcil~~~ 61 (381)
T KOG1280|consen 5 RHEGVSCDGCGKTAFTFRRYKCLRCSDYDLCFSCYENGATTPIHDEDHPMQCILSRV 61 (381)
T ss_pred CcCCceeccccccceeeeeeEeeeecchhHHHHHhhcCCCCcccCCCCceeEEeecc
Confidence 47 899999999999999999999999999999999999999999999999998764
No 21
>KOG0034|consensus
Probab=99.28 E-value=5e-11 Score=103.72 Aligned_cols=133 Identities=16% Similarity=0.292 Sum_probs=99.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCC--CCCccChHHHH-------HHHHHHHHHhhcCCCCCe-eehHHHHHHHHHhcCC-
Q psy4949 24 SDVSVARFETLLSSLYHNLNKRLP--VSQQVHVEVLS-------GLLLNWLLSAYSVESLGR-IRVFSIKVALATMCSG- 92 (275)
Q Consensus 24 ~~l~~~~l~~~L~~lY~~~~k~~P--~~~~v~~~~~~-------~l~~~~lf~~fD~~~~G~-I~~~ef~~aLs~Lc~G- 92 (275)
+.++.+| +..||..|.|-.+ ..+.++.++.. ..+...++..||++++|. |+|.+|+-+|++....
T Consensus 25 ~~fs~~E----I~~L~~rF~kl~~~~~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~~~~~v~F~~Fv~~ls~f~~~~ 100 (187)
T KOG0034|consen 25 TQFSANE----IERLYERFKKLDRNNGDGYLTKEEFLSIPELALNPLADRIIDRFDTDGNGDPVDFEEFVRLLSVFSPKA 100 (187)
T ss_pred cccCHHH----HHHHHHHHHHhccccccCccCHHHHHHHHHHhcCcHHHHHHHHHhccCCCCccCHHHHHHHHhhhcCCc
Confidence 4578778 5555555555322 33566655544 446778999999999999 9999999999999955
Q ss_pred ChhhHHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCC--CCchHHHhhhhcC-----CCcccHHHHHHHHh
Q psy4949 93 KLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSF--SYTDTLAQEIFSG-----NGKVTVNDFMDTMM 164 (275)
Q Consensus 93 ~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f--~~~e~~v~~cF~~-----d~~Is~~eFl~~~~ 164 (275)
...+|++++|++| .|++|+|+|+++..++..+ +++...- ..-+..++..|.. ||.||.+||...+.
T Consensus 101 ~~~~Kl~faF~vYD~~~~G~I~reel~~iv~~~------~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 101 SKREKLRFAFRVYDLDGDGFISREELKQILRMM------VGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred cHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHH------HccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 5555999999999 6999999999999888765 3332221 1114567777775 79999999999886
Q ss_pred cC
Q psy4949 165 SE 166 (275)
Q Consensus 165 ~d 166 (275)
+.
T Consensus 175 ~~ 176 (187)
T KOG0034|consen 175 KQ 176 (187)
T ss_pred cC
Confidence 65
No 22
>KOG4582|consensus
Probab=99.18 E-value=1.4e-11 Score=113.34 Aligned_cols=47 Identities=32% Similarity=0.911 Sum_probs=42.3
Q ss_pred cccCcCCCCccccceeeeccCCCCccchhhhhCCcccCCCCCCCceeeecC
Q psy4949 191 IACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEVKENHP 241 (275)
Q Consensus 191 ~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~g~~~~~H~~~H~m~e~~~ 241 (275)
+.||.|...+|+|.||||+.|.|||||+.|+. ...|+..|.|.+..+
T Consensus 153 v~CD~C~~~~IvG~RyKC~~C~dYDLCe~Ce~----~~~~h~~H~~lR~~t 199 (278)
T KOG4582|consen 153 VPCDNCGKPGIVGARYKCTVCPDYDLCERCEA----GNEHHAAHAMLRLHT 199 (278)
T ss_pred ccCCCccCCccccceeeecCCCccchhHHhhc----CCCCCcccceeeccc
Confidence 89999999999999999999999999999993 225999999999544
No 23
>cd02337 ZZ_CBP Zinc finger, ZZ type. Zinc finger present in CBP/p300 and related proteins. The ZZ motif coordinates two zinc ions and most likely participates in ligand binding or molecular scaffolding. CREB-binding protein (CBP) is a large multidomain protein that provides binding sites for transcriptional coactivators, the role of the ZZ domain in CBP/p300 is unclear.
Probab=98.79 E-value=2.6e-09 Score=70.65 Aligned_cols=30 Identities=27% Similarity=0.956 Sum_probs=27.3
Q ss_pred ccCcCCCCccccceeeeccCCCCccchhhhhC
Q psy4949 192 ACDACGRANFVGFRYRCAKCGNFQMCQECFWW 223 (275)
Q Consensus 192 ~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~ 223 (275)
.||+|.. +.|.||+|..|.|||||..||.+
T Consensus 2 ~C~~C~~--~~~~r~~C~~C~dfDLC~~C~~~ 31 (41)
T cd02337 2 TCNECKH--HVETRWHCTVCEDYDLCITCYNT 31 (41)
T ss_pred cCCCCCC--cCCCceECCCCcchhhHHHHhCC
Confidence 6999976 67899999999999999999965
No 24
>PTZ00184 calmodulin; Provisional
Probab=98.75 E-value=3.4e-07 Score=74.31 Aligned_cols=93 Identities=18% Similarity=0.293 Sum_probs=72.7
Q ss_pred HHHHHHhhcCCCCCeeehHHHHHHHHHhcC-CChhhHHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCC
Q psy4949 62 LNWLLSAYSVESLGRIRVFSIKVALATMCS-GKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSY 139 (275)
Q Consensus 62 ~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~-G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~ 139 (275)
+..+++.+|.+++|.|++.+|+.++..... ....++++.+|+.| .|++|.|++.++..+++.+ + +..
T Consensus 49 ~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~~~~~~~~~~~F~~~D~~~~g~i~~~e~~~~l~~~-------~----~~~ 117 (149)
T PTZ00184 49 LQDMINEVDADGNGTIDFPEFLTLMARKMKDTDSEEEIKEAFKVFDRDGNGFISAAELRHVMTNL-------G----EKL 117 (149)
T ss_pred HHHHHHhcCcCCCCcCcHHHHHHHHHHhccCCcHHHHHHHHHHhhCCCCCCeEeHHHHHHHHHHH-------C----CCC
Confidence 467899999999999999999999987653 45667889999999 6899999999998888753 1 112
Q ss_pred chHHHhhhhcC-----CCcccHHHHHHHHhc
Q psy4949 140 TDTLAQEIFSG-----NGKVTVNDFMDTMMS 165 (275)
Q Consensus 140 ~e~~v~~cF~~-----d~~Is~~eFl~~~~~ 165 (275)
+++.++.+|.. ++.|+.+||+..+..
T Consensus 118 ~~~~~~~~~~~~d~~~~g~i~~~ef~~~~~~ 148 (149)
T PTZ00184 118 TDEEVDEMIREADVDGDGQINYEEFVKMMMS 148 (149)
T ss_pred CHHHHHHHHHhcCCCCCCcCcHHHHHHHHhc
Confidence 34445555543 689999999987753
No 25
>PTZ00183 centrin; Provisional
Probab=98.74 E-value=3.9e-07 Score=75.07 Aligned_cols=131 Identities=15% Similarity=0.225 Sum_probs=89.9
Q ss_pred HHHHHHHHcCCCCcCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcCCCCCeeehHHHHHHH
Q psy4949 7 NVIEAFRENGLNAIELQSDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSIKVAL 86 (275)
Q Consensus 7 ~~~e~f~~~~l~~~~~~~~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~~aL 86 (275)
.+.++|+...-+ .+..|+..++..+|+.+ . ...+.+ .+.-+++.+|.+++|.|++.+|+.++
T Consensus 18 ~~~~~F~~~D~~---~~G~i~~~e~~~~l~~~----g------~~~~~~-----~~~~l~~~~d~~~~g~i~~~eF~~~~ 79 (158)
T PTZ00183 18 EIREAFDLFDTD---GSGTIDPKELKVAMRSL----G------FEPKKE-----EIKQMIADVDKDGSGKIDFEEFLDIM 79 (158)
T ss_pred HHHHHHHHhCCC---CCCcccHHHHHHHHHHh----C------CCCCHH-----HHHHHHHHhCCCCCCcEeHHHHHHHH
Confidence 344555554433 34567777755555433 0 011111 25578899999999999999999998
Q ss_pred HHhc-CCChhhHHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhc-----CCCcccHHHH
Q psy4949 87 ATMC-SGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFS-----GNGKVTVNDF 159 (275)
Q Consensus 87 s~Lc-~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~-----~d~~Is~~eF 159 (275)
.... .....+.++.+|+.+ .|++|.|++.+|..+++.+ |+. -++..++..|. ++|.|+.++|
T Consensus 80 ~~~~~~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~-------~~~----l~~~~~~~~~~~~d~~~~g~i~~~ef 148 (158)
T PTZ00183 80 TKKLGERDPREEILKAFRLFDDDKTGKISLKNLKRVAKEL-------GET----ITDEELQEMIDEADRNGDGEISEEEF 148 (158)
T ss_pred HHHhcCCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHh-------CCC----CCHHHHHHHHHHhCCCCCCcCcHHHH
Confidence 8764 445667899999999 5889999999998888753 211 13444555553 2688999999
Q ss_pred HHHHhcC
Q psy4949 160 MDTMMSE 166 (275)
Q Consensus 160 l~~~~~d 166 (275)
+..+..+
T Consensus 149 ~~~~~~~ 155 (158)
T PTZ00183 149 YRIMKKT 155 (158)
T ss_pred HHHHhcc
Confidence 9988665
No 26
>KOG0027|consensus
Probab=98.68 E-value=1.8e-07 Score=78.14 Aligned_cols=120 Identities=23% Similarity=0.314 Sum_probs=85.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcCCCCCeeehHHHHHHHHHhcCCChh-----hH
Q psy4949 23 QSDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSIKVALATMCSGKLM-----DK 97 (275)
Q Consensus 23 ~~~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~-----dK 97 (275)
+..++..+|..+++.+-.. |+ ..+ +.-+++-+|.+++|.|++.+|+..+......... +.
T Consensus 22 ~G~i~~~el~~~lr~lg~~-----~t-----~~e-----l~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~~~~~~~e 86 (151)
T KOG0027|consen 22 DGKISVEELGAVLRSLGQN-----PT-----EEE-----LRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTDEEASSEE 86 (151)
T ss_pred CCcccHHHHHHHHHHcCCC-----CC-----HHH-----HHHHHHHhCCCCCCeEcHHHHHHHHHhhhcccccccccHHH
Confidence 3668888977777665533 32 122 3567889999999999999999999877765443 38
Q ss_pred HHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhh-cCCCcccHHHHHHHHh
Q psy4949 98 LRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIF-SGNGKVTVNDFMDTMM 164 (275)
Q Consensus 98 lr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF-~~d~~Is~~eFl~~~~ 164 (275)
++-+|++| .|++|+||..+|..+|+.+ |+..+....+..++..- .+||.|+.++|+..+.
T Consensus 87 l~eaF~~fD~d~~G~Is~~el~~~l~~l-------g~~~~~~e~~~mi~~~d~d~dg~i~f~ef~~~m~ 148 (151)
T KOG0027|consen 87 LKEAFRVFDKDGDGFISASELKKVLTSL-------GEKLTDEECKEMIREVDVDGDGKVNFEEFVKMMS 148 (151)
T ss_pred HHHHHHHHccCCCCcCcHHHHHHHHHHh-------CCcCCHHHHHHHHHhcCCCCCCeEeHHHHHHHHh
Confidence 99999999 7999999999999888764 55433111122333321 2479999999999764
No 27
>cd02336 ZZ_RSC8 Zinc finger, ZZ type. Zinc finger present in RSC8 and related proteins. RSC8 is a component of the RSC complex, which is closely related to the SWI/SNF complex and is involved in remodeling chromatin structure. The ZZ motif coordinates a zinc ion and most likely participates in ligand binding or molecular scaffolding.
Probab=98.51 E-value=1e-07 Score=64.28 Aligned_cols=42 Identities=24% Similarity=0.633 Sum_probs=37.9
Q ss_pred cccCcCCCCccccceeeeccCCCCccchhhhhCCcccCCCCCC
Q psy4949 191 IACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLE 233 (275)
Q Consensus 191 ~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~g~~~~~H~~~ 233 (275)
..|+.|+. ..+..||+|+++.+||||..||..|+.+.+|...
T Consensus 1 y~C~~Cg~-D~t~vryh~~~~~~~dLC~~CF~~G~f~~~~~s~ 42 (45)
T cd02336 1 YHCFTCGN-DCTRVRYHNLKAKKYDLCPSCYQEGRFPSNFQSS 42 (45)
T ss_pred CcccCCCC-ccCceEEEecCCCccccChHHHhCcCCCCCCccc
Confidence 36999998 7788999999999999999999999999888754
No 28
>KOG0457|consensus
Probab=98.43 E-value=1.2e-07 Score=90.59 Aligned_cols=51 Identities=29% Similarity=0.757 Sum_probs=46.5
Q ss_pred CcccCcCCCCccccce-eeeccCCCCccchhhhhCCcccCCCCCCCceeeecC
Q psy4949 190 PIACDACGRANFVGFR-YRCAKCGNFQMCQECFWWGRVSGGHNLEHEVKENHP 241 (275)
Q Consensus 190 ~~~Cd~C~~~pI~G~R-ykC~~C~~~dLC~~C~~~g~~~~~H~~~H~m~e~~~ 241 (275)
...|++|.. .|.|.. .||..|+|||||..||+.|.+.+.|+.+||+.-..+
T Consensus 14 ky~C~~C~~-dit~~i~ikCaeCp~fdLCl~CFs~GaE~~~H~~~H~Yrim~~ 65 (438)
T KOG0457|consen 14 KYNCDYCSL-DITGLIRIKCAECPDFDLCLQCFSVGAETGKHQNDHPYRIMDT 65 (438)
T ss_pred CCCCccHhH-HhccceEEEeecCCCcchhHHHHhcccccCCCCCCCCceeecC
Confidence 478999998 888885 999999999999999999999999999999876655
No 29
>PTZ00183 centrin; Provisional
Probab=98.19 E-value=2.4e-05 Score=64.31 Aligned_cols=109 Identities=13% Similarity=0.187 Sum_probs=77.7
Q ss_pred cCCCCCccChHHHHHHHHHHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHHHHHHHHH
Q psy4949 45 RLPVSQQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQD 123 (275)
Q Consensus 45 ~~P~~~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~ 123 (275)
+-|....++.++-..+ .-+|..||++++|+|+..+|..+|..+-.....+.+..+|+.+ .|++|.|+..++..++..
T Consensus 4 ~~~~~~~~~~~~~~~~--~~~F~~~D~~~~G~i~~~e~~~~l~~~g~~~~~~~~~~l~~~~d~~~~g~i~~~eF~~~~~~ 81 (158)
T PTZ00183 4 RRSERPGLTEDQKKEI--REAFDLFDTDGSGTIDPKELKVAMRSLGFEPKKEEIKQMIADVDKDGSGKIDFEEFLDIMTK 81 (158)
T ss_pred cccccCCCCHHHHHHH--HHHHHHhCCCCCCcccHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHH
Confidence 3344334554444333 3568999999999999999999999774444556678899988 689999999999876654
Q ss_pred HHhchhhccCCCCCCCchHHHhhhhcC-----CCcccHHHHHHHHhc
Q psy4949 124 VLAIPAAVLESPSFSYTDTLAQEIFSG-----NGKVTVNDFMDTMMS 165 (275)
Q Consensus 124 i~~i~~~~gE~~~f~~~e~~v~~cF~~-----d~~Is~~eFl~~~~~ 165 (275)
.. + . ...+..++.+|.. +|.|+.+||..++..
T Consensus 82 ~~--~----~----~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~ 118 (158)
T PTZ00183 82 KL--G----E----RDPREEILKAFRLFDDDKTGKISLKNLKRVAKE 118 (158)
T ss_pred Hh--c----C----CCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 31 0 0 1134556666664 589999999999864
No 30
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=98.18 E-value=3.7e-06 Score=59.96 Aligned_cols=59 Identities=17% Similarity=0.262 Sum_probs=50.6
Q ss_pred HHHHHHhhcCCCCCeeehHHHHHHHHHhcC----CChhhHHHHhchhh-ccCCCceeHHHHHHH
Q psy4949 62 LNWLLSAYSVESLGRIRVFSIKVALATMCS----GKLMDKLRYIFSQL-CDCNGHLVAWKFNEY 120 (275)
Q Consensus 62 ~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~----G~l~dKlr~~F~ly-~D~nG~i~~~el~~~ 120 (275)
+..+|+.||.+++|.|+..|++.++..+-. ..+.+.++.+|+.+ .|+||.|+..||..+
T Consensus 2 l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~ 65 (66)
T PF13499_consen 2 LKEAFKKFDKDGDGYISKEELRRALKHLGRDMSDEESDEMIDQIFREFDTDGDGRISFDEFLNF 65 (66)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHSTHHHHHHHHHHHHHHHTTTSSSSEEHHHHHHH
T ss_pred HHHHHHHHcCCccCCCCHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcCCCcHHHHhcc
Confidence 357899999999999999999999998874 34556667889999 799999999999764
No 31
>PLN02964 phosphatidylserine decarboxylase
Probab=98.08 E-value=1.2e-05 Score=81.62 Aligned_cols=71 Identities=8% Similarity=0.043 Sum_probs=61.8
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHHHHHHHHH
Q psy4949 53 HVEVLSGLLLNWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQD 123 (275)
Q Consensus 53 ~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~ 123 (275)
++.+....++.-+|+.||.+++|.|++.||+..+..+..+..+++++++|+.+ .|++|.|+.+||..+|+.
T Consensus 172 ~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~lg~~~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 172 DPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAFGNLVAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhccCCCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 33344344578899999999999999999999999887778899999999999 699999999999998887
No 32
>PTZ00184 calmodulin; Provisional
Probab=98.07 E-value=1.8e-05 Score=64.12 Aligned_cols=92 Identities=14% Similarity=0.216 Sum_probs=72.2
Q ss_pred HHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchH
Q psy4949 64 WLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDT 142 (275)
Q Consensus 64 ~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~ 142 (275)
-.|..+|++++|.|+..+|..+|..+......+..+.+|+.+ .|++|.|+.+++..++...+.. ...+.
T Consensus 15 ~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~d~~~~g~i~~~ef~~~l~~~~~~----------~~~~~ 84 (149)
T PTZ00184 15 EAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTLMARKMKD----------TDSEE 84 (149)
T ss_pred HHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHhcCcCCCCcCcHHHHHHHHHHhccC----------CcHHH
Confidence 577899999999999999999999887666677889999998 6889999999998776643211 11244
Q ss_pred HHhhhhcC-----CCcccHHHHHHHHhc
Q psy4949 143 LAQEIFSG-----NGKVTVNDFMDTMMS 165 (275)
Q Consensus 143 ~v~~cF~~-----d~~Is~~eFl~~~~~ 165 (275)
.+..+|.. +|.|+.++|..++..
T Consensus 85 ~~~~~F~~~D~~~~g~i~~~e~~~~l~~ 112 (149)
T PTZ00184 85 EIKEAFKVFDRDGNGFISAAELRHVMTN 112 (149)
T ss_pred HHHHHHHhhCCCCCCeEeHHHHHHHHHH
Confidence 56666654 588999999998854
No 33
>KOG0027|consensus
Probab=98.04 E-value=2.6e-05 Score=65.11 Aligned_cols=98 Identities=13% Similarity=0.218 Sum_probs=77.1
Q ss_pred HHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCch
Q psy4949 63 NWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTD 141 (275)
Q Consensus 63 ~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e 141 (275)
.-+|+.||.+++|+|+..++..++..|.....++.++-+++.+ .|++|.|+..+|..++......... .....
T Consensus 11 ~~~F~~fD~d~~G~i~~~el~~~lr~lg~~~t~~el~~~~~~~D~dg~g~I~~~eF~~l~~~~~~~~~~------~~~~~ 84 (151)
T KOG0027|consen 11 KEAFQLFDKDGDGKISVEELGAVLRSLGQNPTEEELRDLIKEIDLDGDGTIDFEEFLDLMEKLGEEKTD------EEASS 84 (151)
T ss_pred HHHHHHHCCCCCCcccHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCeEcHHHHHHHHHhhhccccc------ccccH
Confidence 4689999999999999999999999999999999999999999 6999999999999888754332210 00123
Q ss_pred HHHhhhhc---C--CCcccHHHHHHHHhcC
Q psy4949 142 TLAQEIFS---G--NGKVTVNDFMDTMMSE 166 (275)
Q Consensus 142 ~~v~~cF~---~--d~~Is~~eFl~~~~~d 166 (275)
..+...|. . +|.||.+|+...++.-
T Consensus 85 ~el~eaF~~fD~d~~G~Is~~el~~~l~~l 114 (151)
T KOG0027|consen 85 EELKEAFRVFDKDGDGFISASELKKVLTSL 114 (151)
T ss_pred HHHHHHHHHHccCCCCcCcHHHHHHHHHHh
Confidence 34444444 3 6899999999987753
No 34
>KOG4666|consensus
Probab=98.04 E-value=1.1e-05 Score=75.08 Aligned_cols=144 Identities=19% Similarity=0.170 Sum_probs=97.8
Q ss_pred HHHHHHHHHhhcCCCCCc----cC--hHHHHHHHHHHHHHhhcCCCCCeeehHHHHHHHHHhcCC-ChhhHHHHhchhh-
Q psy4949 34 LLSSLYHNLNKRLPVSQQ----VH--VEVLSGLLLNWLLSAYSVESLGRIRVFSIKVALATMCSG-KLMDKLRYIFSQL- 105 (275)
Q Consensus 34 ~L~~lY~~~~k~~P~~~~----v~--~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G-~l~dKlr~~F~ly- 105 (275)
+..-.|.+=++..|.-+. ++ ++.+ +.+ .-+|..||.+.+|.+|+++.+++|++||+- ...+=++++|++|
T Consensus 229 ld~y~~var~~kg~~igi~efa~~l~vpvs-d~l-~~~f~LFde~~tg~~D~re~v~~lavlc~p~~t~~iiq~afk~f~ 306 (412)
T KOG4666|consen 229 LDGYVYVAREAKGPDIGIVEFAVNLRVPVS-DKL-APTFMLFDEGTTGNGDYRETVKTLAVLCGPPVTPVIIQYAFKRFS 306 (412)
T ss_pred HhhHHHHHHhccCCCcceeEeeeeeecchh-hhh-hhhhheecCCCCCcccHHHHhhhheeeeCCCCcHHHHHHHHHhcc
Confidence 444566666666665332 22 3333 443 478999999999999999999999999986 6778889999999
Q ss_pred ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcC-CCcccHHHHHHHHhcCCCCcc-cchhhhhhcccc
Q psy4949 106 CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG-NGKVTVNDFMDTMMSEPGPAC-LIWLPLLHRLTA 183 (275)
Q Consensus 106 ~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~-d~~Is~~eFl~~~~~d~~Pq~-lvWL~~~~r~~~ 183 (275)
++-||.+.-.+|..||+.++-++. . +. .-.-.++=++ +++|+.++|...+... |.. +..+.++..
T Consensus 307 v~eDg~~ge~~ls~ilq~~lgv~~----l-~v---~~lf~~i~q~d~~ki~~~~f~~fa~~~--p~~a~~~~~yld~--- 373 (412)
T KOG4666|consen 307 VAEDGISGEHILSLILQVVLGVEV----L-RV---PVLFPSIEQKDDPKIYASNFRKFAATE--PNLALSELGYLDK--- 373 (412)
T ss_pred cccccccchHHHHHHHHHhcCcce----e-ec---cccchhhhcccCcceeHHHHHHHHHhC--chhhhhhhccccc---
Confidence 799999999999999987755531 1 00 0111222333 5899999999988665 653 334444332
Q ss_pred cCCCCcCcccC
Q psy4949 184 VESTSHPIACD 194 (275)
Q Consensus 184 ~~~~~h~~~Cd 194 (275)
.+.|-..|.
T Consensus 374 --~~~H~~s~~ 382 (412)
T KOG4666|consen 374 --RIYHATSNG 382 (412)
T ss_pred --hheeeeecc
Confidence 345545554
No 35
>COG5114 Histone acetyltransferase complex SAGA/ADA, subunit ADA2 [Chromatin structure and dynamics]
Probab=97.94 E-value=4.1e-06 Score=77.42 Aligned_cols=53 Identities=25% Similarity=0.402 Sum_probs=46.2
Q ss_pred CcccCcCCCCccccceeeeccCCCCccchhhhhCCcccCCCCCCCceeeecCC
Q psy4949 190 PIACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEVKENHPV 242 (275)
Q Consensus 190 ~~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~g~~~~~H~~~H~m~e~~~~ 242 (275)
.+.||+|...-..-.+.+|..|++||||..||..|...+.|+..|++.-+.+-
T Consensus 5 k~hCdvC~~d~T~~~~i~C~eC~~~DLC~pCF~~g~~tg~H~pyH~YRiietn 57 (432)
T COG5114 5 KIHCDVCFLDMTDLTFIKCNECPAVDLCLPCFVNGIETGVHSPYHGYRIIETN 57 (432)
T ss_pred eeeehHHHHhhhcceeeeeecccccceehhhhhccccccccCCCCCeeEeecc
Confidence 36799999866666799999999999999999999999999999998766543
No 36
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=97.92 E-value=0.00012 Score=62.28 Aligned_cols=73 Identities=11% Similarity=0.204 Sum_probs=60.4
Q ss_pred CccChHHHHHHH------------HHHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHH
Q psy4949 50 QQVHVEVLSGLL------------LNWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWK 116 (275)
Q Consensus 50 ~~v~~~~~~~l~------------~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~e 116 (275)
+.|+-+++...+ +.|.|++||.|+||+|++.++.-.|..+---..++-..-+++.+ .|++|.|+.++
T Consensus 70 ~~idf~~Fl~~ms~~~~~~~~~Eel~~aF~~fD~d~dG~Is~~eL~~vl~~lge~~~deev~~ll~~~d~d~dG~i~~~e 149 (160)
T COG5126 70 ETVDFPEFLTVMSVKLKRGDKEEELREAFKLFDKDHDGYISIGELRRVLKSLGERLSDEEVEKLLKEYDEDGDGEIDYEE 149 (160)
T ss_pred CccCHHHHHHHHHHHhccCCcHHHHHHHHHHhCCCCCceecHHHHHHHHHhhcccCCHHHHHHHHHhcCCCCCceEeHHH
Confidence 456666655443 34789999999999999999999999777777888889999999 59999999999
Q ss_pred HHHHHH
Q psy4949 117 FNEYLQ 122 (275)
Q Consensus 117 l~~~L~ 122 (275)
|..++.
T Consensus 150 F~~~~~ 155 (160)
T COG5126 150 FKKLIK 155 (160)
T ss_pred HHHHHh
Confidence 977654
No 37
>PF13499 EF-hand_7: EF-hand domain pair; PDB: 1TCF_A 2TN4_A 1TN4_A 1A2X_A 2CT9_B 2OTG_B 2OS8_B 1SNL_A 3O4Y_A 3J04_E ....
Probab=97.86 E-value=1.1e-05 Score=57.57 Aligned_cols=60 Identities=18% Similarity=0.381 Sum_probs=44.5
Q ss_pred HHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcC-----CCcccHHHHHHHH
Q psy4949 97 KLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG-----NGKVTVNDFMDTM 163 (275)
Q Consensus 97 Klr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~-----d~~Is~~eFl~~~ 163 (275)
|++.+|+.| .|++|.|+++||..+++.+..-.. ....++.++.+|.. +|.|+.+||+.++
T Consensus 1 ~l~~~F~~~D~d~~G~i~~~el~~~~~~~~~~~~-------~~~~~~~~~~~~~~~D~d~dG~i~~~Ef~~~~ 66 (66)
T PF13499_consen 1 RLKEAFKKFDKDGDGYISKEELRRALKHLGRDMS-------DEESDEMIDQIFREFDTDGDGRISFDEFLNFM 66 (66)
T ss_dssp HHHHHHHHHSTTSSSEEEHHHHHHHHHHTTSHST-------HHHHHHHHHHHHHHHTTTSSSSEEHHHHHHHH
T ss_pred CHHHHHHHHcCCccCCCCHHHHHHHHHHhccccc-------HHHHHHHHHHHHHHhCCCCcCCCcHHHHhccC
Confidence 789999999 799999999999988886522110 01124566666764 7999999999864
No 38
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=97.79 E-value=9.2e-05 Score=50.02 Aligned_cols=59 Identities=17% Similarity=0.251 Sum_probs=53.0
Q ss_pred HHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHHHHHHH
Q psy4949 63 NWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYL 121 (275)
Q Consensus 63 ~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L 121 (275)
..+|+.||.+++|.|++.+|..++..+......+.++.+|..+ .+++|.|+.+++..++
T Consensus 3 ~~~f~~~d~~~~g~l~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 3 REAFRLFDKDGDGTISADELKAALKSLGEGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred HHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 4679999999999999999999999998888888899999999 6889999999987654
No 39
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=97.75 E-value=4.8e-05 Score=46.47 Aligned_cols=27 Identities=11% Similarity=0.204 Sum_probs=23.9
Q ss_pred HHHHHhhcCCCCCeeehHHHHHHHHHh
Q psy4949 63 NWLLSAYSVESLGRIRVFSIKVALATM 89 (275)
Q Consensus 63 ~~lf~~fD~~~~G~I~~~ef~~aLs~L 89 (275)
..+|+.||+|+||+|++.||+.++.-|
T Consensus 3 ~~~F~~~D~d~dG~I~~~Ef~~~~~~L 29 (29)
T PF00036_consen 3 KEAFREFDKDGDGKIDFEEFKEMMKKL 29 (29)
T ss_dssp HHHHHHHSTTSSSEEEHHHHHHHHHHT
T ss_pred HHHHHHHCCCCCCcCCHHHHHHHHHhC
Confidence 578999999999999999999988754
No 40
>KOG0038|consensus
Probab=97.74 E-value=0.00016 Score=60.51 Aligned_cols=103 Identities=13% Similarity=0.243 Sum_probs=76.2
Q ss_pred HHHHHHHhhcCCCCCeeehHHHHHHHHHhcC-CChhhHHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCC
Q psy4949 61 LLNWLLSAYSVESLGRIRVFSIKVALATMCS-GKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFS 138 (275)
Q Consensus 61 ~~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~-G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~ 138 (275)
+-..+-.+|-.+|.|.++|..|.-++|++|. ...+=|..|+|++| -|+++.|-...|...|+.+ .+ +|... .
T Consensus 72 fk~ri~e~FSeDG~GnlsfddFlDmfSV~sE~APrdlK~~YAFkIYDfd~D~~i~~~DL~~~l~~l---Tr--~eLs~-e 145 (189)
T KOG0038|consen 72 FKRRICEVFSEDGRGNLSFDDFLDMFSVFSEMAPRDLKAKYAFKIYDFDGDEFIGHDDLEKTLTSL---TR--DELSD-E 145 (189)
T ss_pred HHHHHHHHhccCCCCcccHHHHHHHHHHHHhhChHHhhhhheeEEeecCCCCcccHHHHHHHHHHH---hh--ccCCH-H
Confidence 3445779999999999999999999999995 57777999999999 6999999999999888765 21 22100 0
Q ss_pred CchHHHhhhhc-----CCCcccHHHHHHHHhcCCCCcc
Q psy4949 139 YTDTLAQEIFS-----GNGKVTVNDFMDTMMSEPGPAC 171 (275)
Q Consensus 139 ~~e~~v~~cF~-----~d~~Is~~eFl~~~~~d~~Pq~ 171 (275)
-.+...+.+-+ +||+++..||-..+.+- |..
T Consensus 146 Ev~~i~ekvieEAD~DgDgkl~~~eFe~~i~ra--PDF 181 (189)
T KOG0038|consen 146 EVELICEKVIEEADLDGDGKLSFAEFEHVILRA--PDF 181 (189)
T ss_pred HHHHHHHHHHHHhcCCCCCcccHHHHHHHHHhC--cch
Confidence 01122333322 37899999999987654 543
No 41
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=97.71 E-value=0.00015 Score=55.99 Aligned_cols=65 Identities=15% Similarity=0.098 Sum_probs=55.8
Q ss_pred HHHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHHHHHHHHHHHhch
Q psy4949 62 LNWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIP 128 (275)
Q Consensus 62 ~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~ 128 (275)
+.-+|.+||.+++|.|++.+++.++..+ |-..+..+.+|+.+ .|++|.|+.++|..++..+.++-
T Consensus 12 l~~~F~~~D~d~~G~Is~~el~~~l~~~--~~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~~~~~~ 77 (96)
T smart00027 12 YEQIFRSLDKNQDGTVTGAQAKPILLKS--GLPQTLLAKIWNLADIDNDGELDKDEFALAMHLIYRKL 77 (96)
T ss_pred HHHHHHHhCCCCCCeEeHHHHHHHHHHc--CCCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999873 66677789999998 57899999999999998876663
No 42
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.64 E-value=8.2e-05 Score=60.08 Aligned_cols=57 Identities=14% Similarity=0.395 Sum_probs=42.6
Q ss_pred hhhHHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcC-----CCcccHHHHHHHHhc
Q psy4949 94 LMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG-----NGKVTVNDFMDTMMS 165 (275)
Q Consensus 94 l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~-----d~~Is~~eFl~~~~~ 165 (275)
-.++++|+|..+ .|+||.|+++||..+. + +..+..++.+|.. ||.||++||...+.+
T Consensus 46 ~~~~l~w~F~~lD~d~DG~Ls~~EL~~~~-----l----------~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl~~ 108 (116)
T cd00252 46 CKDPVGWMFNQLDGNYDGKLSHHELAPIR-----L----------DPNEHCIKPFFESCDLDKDGSISLDEWCYCFIK 108 (116)
T ss_pred HHHHHHHHHHHHCCCCCCcCCHHHHHHHH-----c----------cchHHHHHHHHHHHCCCCCCCCCHHHHHHHHhC
Confidence 347789999999 6999999999997654 1 1124455555553 799999999998855
No 43
>KOG0037|consensus
Probab=97.63 E-value=0.00079 Score=59.65 Aligned_cols=75 Identities=13% Similarity=0.170 Sum_probs=53.8
Q ss_pred CCCCccChHHHHHHHHH---H--HHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhhccC-CCceeHHHHHHH
Q psy4949 47 PVSQQVHVEVLSGLLLN---W--LLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQLCDC-NGHLVAWKFNEY 120 (275)
Q Consensus 47 P~~~~v~~~~~~~l~~~---~--lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly~D~-nG~i~~~el~~~ 120 (275)
+..+.|+..++..|... | +|+.||+|++|+|+..|+..||..+----..+=+.-+++.|++. +|.|.-.++.+.
T Consensus 106 ~~~G~i~f~EF~~Lw~~i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~Gy~Lspq~~~~lv~kyd~~~~g~i~FD~FI~c 185 (221)
T KOG0037|consen 106 DNSGTIGFKEFKALWKYINQWRNVFRTYDRDRSGTIDSSELRQALTQLGYRLSPQFYNLLVRKYDRFGGGRIDFDDFIQC 185 (221)
T ss_pred CCCCccCHHHHHHHHHHHHHHHHHHHhcccCCCCcccHHHHHHHHHHcCcCCCHHHHHHHHHHhccccCCceeHHHHHHH
Confidence 34567888888887543 4 88888888888888888888888665544555567788888766 787776665443
Q ss_pred H
Q psy4949 121 L 121 (275)
Q Consensus 121 L 121 (275)
+
T Consensus 186 c 186 (221)
T KOG0037|consen 186 C 186 (221)
T ss_pred H
Confidence 3
No 44
>KOG0028|consensus
Probab=97.57 E-value=0.00038 Score=58.96 Aligned_cols=133 Identities=15% Similarity=0.215 Sum_probs=85.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhcCCC-CCccChHHH-HHHH-H---------HHHHHhhcCCCCCeeehHHHHHHHHH
Q psy4949 21 ELQSDVSVARFETLLSSLYHNLNKRLPV-SQQVHVEVL-SGLL-L---------NWLLSAYSVESLGRIRVFSIKVALAT 88 (275)
Q Consensus 21 ~~~~~l~~~~l~~~L~~lY~~~~k~~P~-~~~v~~~~~-~~l~-~---------~~lf~~fD~~~~G~I~~~ef~~aLs~ 88 (275)
++...+...+ =+.|..+|.=-.|. .+.+++++. +.+. + +-|+.=+|++++|.|+|.+|+..++.
T Consensus 22 ~~~~~l~~~q----~q~i~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k~ei~kll~d~dk~~~g~i~fe~f~~~mt~ 97 (172)
T KOG0028|consen 22 SPKSELTEEQ----KQEIKEAFELFDPDMAGKIDVEELKVAMRALGFEPKKEEILKLLADVDKEGSGKITFEDFRRVMTV 97 (172)
T ss_pred CCCccccHHH----HhhHHHHHHhhccCCCCcccHHHHHHHHHHcCCCcchHHHHHHHHhhhhccCceechHHHHHHHHH
Confidence 3455555555 33344433322232 246777765 3332 2 23788999999999999999876443
Q ss_pred -hcCCChhhHHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcC--CCcccHHHHHHHHh
Q psy4949 89 -MCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG--NGKVTVNDFMDTMM 164 (275)
Q Consensus 89 -Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~--d~~Is~~eFl~~~~ 164 (275)
+.-+...+-++.+|++. .|.+|.|+...|..+.+. +||..+-.--++.++. +.. |+.|+++||+..++
T Consensus 98 k~~e~dt~eEi~~afrl~D~D~~Gkis~~~lkrvake-------LgenltD~El~eMIeE-Ad~d~dgevneeEF~~imk 169 (172)
T KOG0028|consen 98 KLGERDTKEEIKKAFRLFDDDKTGKISQRNLKRVAKE-------LGENLTDEELMEMIEE-ADRDGDGEVNEEEFIRIMK 169 (172)
T ss_pred HHhccCcHHHHHHHHHcccccCCCCcCHHHHHHHHHH-------hCccccHHHHHHHHHH-hcccccccccHHHHHHHHh
Confidence 33344778899999999 799999999998665554 4554321111233444 343 68999999999775
Q ss_pred c
Q psy4949 165 S 165 (275)
Q Consensus 165 ~ 165 (275)
+
T Consensus 170 ~ 170 (172)
T KOG0028|consen 170 K 170 (172)
T ss_pred c
Confidence 4
No 45
>KOG0034|consensus
Probab=97.57 E-value=0.0016 Score=56.77 Aligned_cols=115 Identities=18% Similarity=0.235 Sum_probs=80.3
Q ss_pred HHHHHHHHHHcCCCCcCCCCCCCHHHHHHHH--------HHHHHHHhhcCCCCCccChHHHHHHH------------HHH
Q psy4949 5 IWNVIEAFRENGLNAIELQSDVSVARFETLL--------SSLYHNLNKRLPVSQQVHVEVLSGLL------------LNW 64 (275)
Q Consensus 5 ~~~~~e~f~~~~l~~~~~~~~l~~~~l~~~L--------~~lY~~~~k~~P~~~~v~~~~~~~l~------------~~~ 64 (275)
|.-+.+.|..-..+. .+..|+..|+..+. ..|+..|-... ++..|+.++++..+ +.+
T Consensus 32 I~~L~~rF~kl~~~~--~~g~lt~eef~~i~~~~~Np~~~rI~~~f~~~~-~~~~v~F~~Fv~~ls~f~~~~~~~~Kl~f 108 (187)
T KOG0034|consen 32 IERLYERFKKLDRNN--GDGYLTKEEFLSIPELALNPLADRIIDRFDTDG-NGDPVDFEEFVRLLSVFSPKASKREKLRF 108 (187)
T ss_pred HHHHHHHHHHhcccc--ccCccCHHHHHHHHHHhcCcHHHHHHHHHhccC-CCCccCHHHHHHHHhhhcCCccHHHHHHH
Confidence 344455555555553 46778888865543 23444443321 21227777776664 346
Q ss_pred HHHhhcCCCCCeeehHHHHHHHHHhcCCChh-------hHHHHhchhh-ccCCCceeHHHHHHHHH
Q psy4949 65 LLSAYSVESLGRIRVFSIKVALATMCSGKLM-------DKLRYIFSQL-CDCNGHLVAWKFNEYLQ 122 (275)
Q Consensus 65 lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~-------dKlr~~F~ly-~D~nG~i~~~el~~~L~ 122 (275)
.|++||.+++|.|+..+++..+..+.++... +....+|.-+ .|++|.|+.+|+..++.
T Consensus 109 aF~vYD~~~~G~I~reel~~iv~~~~~~~~~~~~e~~~~i~d~t~~e~D~d~DG~IsfeEf~~~v~ 174 (187)
T KOG0034|consen 109 AFRVYDLDGDGFISREELKQILRMMVGENDDMSDEQLEDIVDKTFEEADTDGDGKISFEEFCKVVE 174 (187)
T ss_pred HHHHhcCCCCCcCcHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 9999999999999999999999999985333 4456788888 69999999999987664
No 46
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=97.55 E-value=0.00027 Score=49.91 Aligned_cols=59 Identities=17% Similarity=0.126 Sum_probs=49.7
Q ss_pred HHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHHHHHHHHHH
Q psy4949 64 WLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDV 124 (275)
Q Consensus 64 ~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i 124 (275)
-+|..||++++|.|+..+++.++.-+ |-..+..+.+|+.+ .|++|.|+.+++..++..+
T Consensus 3 ~~F~~~D~~~~G~i~~~el~~~l~~~--g~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~~~ 62 (67)
T cd00052 3 QIFRSLDPDGDGLISGDEARPFLGKS--GLPRSVLAQIWDLADTDKDGKLDKEEFAIAMHLI 62 (67)
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHc--CCCHHHHHHHHHHhcCCCCCcCCHHHHHHHHHHH
Confidence 47899999999999999999998765 55667788899988 5789999999998777654
No 47
>KOG0037|consensus
Probab=97.50 E-value=0.00077 Score=59.73 Aligned_cols=84 Identities=15% Similarity=0.318 Sum_probs=63.7
Q ss_pred HHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCc-
Q psy4949 63 NWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYT- 140 (275)
Q Consensus 63 ~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~- 140 (275)
..|.++||++.+|+|.|.||+.--.. ..+.|-+|..| .|++|.|+..||..-|..+ | |.-+
T Consensus 97 rlmI~mfd~~~~G~i~f~EF~~Lw~~------i~~Wr~vF~~~D~D~SG~I~~sEL~~Al~~~-------G----y~Lsp 159 (221)
T KOG0037|consen 97 RLMISMFDRDNSGTIGFKEFKALWKY------INQWRNVFRTYDRDRSGTIDSSELRQALTQL-------G----YRLSP 159 (221)
T ss_pred HHHHHHhcCCCCCccCHHHHHHHHHH------HHHHHHHHHhcccCCCCcccHHHHHHHHHHc-------C----cCCCH
Confidence 57789999999999999999876553 35678899999 6999999999998766642 1 2222
Q ss_pred ---hHHHhhhhcC-CCcccHHHHHHHH
Q psy4949 141 ---DTLAQEIFSG-NGKVTVNDFMDTM 163 (275)
Q Consensus 141 ---e~~v~~cF~~-d~~Is~~eFl~~~ 163 (275)
+..|++.=.. .+.|..++|++.|
T Consensus 160 q~~~~lv~kyd~~~~g~i~FD~FI~cc 186 (221)
T KOG0037|consen 160 QFYNLLVRKYDRFGGGRIDFDDFIQCC 186 (221)
T ss_pred HHHHHHHHHhccccCCceeHHHHHHHH
Confidence 3455553223 6899999999966
No 48
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=97.44 E-value=0.00052 Score=52.96 Aligned_cols=71 Identities=17% Similarity=0.116 Sum_probs=54.7
Q ss_pred ChHHHHHHHHHHHHHhhc-CCCCC-eeehHHHHHHHHHhc-----CCChhhHHHHhchhh-ccCCCceeHHHHHHHHHHH
Q psy4949 53 HVEVLSGLLLNWLLSAYS-VESLG-RIRVFSIKVALATMC-----SGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDV 124 (275)
Q Consensus 53 ~~~~~~~l~~~~lf~~fD-~~~~G-~I~~~ef~~aLs~Lc-----~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i 124 (275)
..+.|+.-+. -+|..|| .+++| +|+..|++.+|.-.. .-.-.+.+.-+++.+ .|+||.|+-.||..++..+
T Consensus 4 ~le~a~~~~~-~~F~~~dd~dgdg~~Is~~EL~~ll~~~~~~~~~~~~~~~~v~~i~~elD~n~dG~Idf~EF~~l~~~l 82 (93)
T cd05026 4 QLEGAMDTLI-RIFHNYSGKEGDRYKLSKGELKELLQRELTDFLSSQKDPMLVDKIMNDLDSNKDNEVDFNEFVVLVAAL 82 (93)
T ss_pred HHHHHHHHHH-HHHHHHHccCCCCCEECHHHHHHHHHHHhHHhcccccCHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHH
Confidence 3455655544 6799999 78998 699999999996532 222445678899988 6999999999998888765
No 49
>cd00252 SPARC_EC SPARC_EC; extracellular Ca2+ binding domain (containing 2 EF-hand motifs) of SPARC and related proteins (QR1, SC1/hevin, testican and tsc-36/FRP). SPARC (BM-40) is a multifunctional glycoprotein, a matricellular protein, that functions to regulate cell-matrix interactions; binds to such proteins as collagen and vitronectin and binds to endothelial cells thus inhibiting cellular proliferation. The EC domain interacts with a follistatin-like (FS) domain which appears to stabilize Ca2+ binding. The two EF-hands interact canonically but their conserved disulfide bonds confer a tight association between the EF-hand pair and an acid/amphiphilic N-terminal helix. Proposed active form involves a Ca2+ dependent symmetric homodimerization of EC-FS modules.
Probab=97.41 E-value=0.00033 Score=56.54 Aligned_cols=58 Identities=9% Similarity=0.122 Sum_probs=49.0
Q ss_pred HHHHHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHHHHHHH
Q psy4949 60 LLLNWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYL 121 (275)
Q Consensus 60 l~~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L 121 (275)
.-+.|.|..+|.|+||.|+..|+.... -+..+....-.|..+ .|++|.||..|+...+
T Consensus 48 ~~l~w~F~~lD~d~DG~Ls~~EL~~~~----l~~~e~~~~~f~~~~D~n~Dg~IS~~Ef~~cl 106 (116)
T cd00252 48 DPVGWMFNQLDGNYDGKLSHHELAPIR----LDPNEHCIKPFFESCDLDKDGSISLDEWCYCF 106 (116)
T ss_pred HHHHHHHHHHCCCCCCcCCHHHHHHHH----ccchHHHHHHHHHHHCCCCCCCCCHHHHHHHH
Confidence 346799999999999999999999755 455567778888888 7999999999997766
No 50
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=97.34 E-value=0.00089 Score=50.54 Aligned_cols=69 Identities=14% Similarity=0.081 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHhhcC--CCCCeeehHHHHHHHHHhcCCC-----hhhHHHHhchhh-ccCCCceeHHHHHHHHHHH
Q psy4949 55 EVLSGLLLNWLLSAYSV--ESLGRIRVFSIKVALATMCSGK-----LMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDV 124 (275)
Q Consensus 55 ~~~~~l~~~~lf~~fD~--~~~G~I~~~ef~~aLs~Lc~G~-----l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i 124 (275)
++..+- +.-+|..||+ +++|.|+..+++.++....+.. ..+.++.+|+.+ .|++|.|+-++|..++..+
T Consensus 4 ~~~~~~-l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~~~ 80 (88)
T cd00213 4 EKAIET-IIDVFHKYSGKEGDKDTLSKKELKELLETELPNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIGKL 80 (88)
T ss_pred HHHHHH-HHHHHHHHhhccCCCCcCcHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHHHH
Confidence 444444 3368999999 8999999999999987544333 367788899988 6888999999998888765
No 51
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=97.32 E-value=0.0012 Score=50.90 Aligned_cols=69 Identities=16% Similarity=0.100 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHhhcC-CCCCeeehHHHHHHHHHhcCCChh--hHHHHhchhh-ccCCCceeHHHHHHHHHHH
Q psy4949 55 EVLSGLLLNWLLSAYSV-ESLGRIRVFSIKVALATMCSGKLM--DKLRYIFSQL-CDCNGHLVAWKFNEYLQDV 124 (275)
Q Consensus 55 ~~~~~l~~~~lf~~fD~-~~~G~I~~~ef~~aLs~Lc~G~l~--dKlr~~F~ly-~D~nG~i~~~el~~~L~~i 124 (275)
+.++.-+. -+|++||+ +++|+|+..|++..|..-.+..+. +-++.+++.+ .|+||.|+-+||..++..+
T Consensus 4 E~ai~~l~-~~F~~fd~~~~~g~i~~~ELk~ll~~elg~~ls~~~~v~~mi~~~D~d~DG~I~F~EF~~l~~~l 76 (89)
T cd05022 4 EKAIETLV-SNFHKASVKGGKESLTASEFQELLTQQLPHLLKDVEGLEEKMKNLDVNQDSKLSFEEFWELIGEL 76 (89)
T ss_pred HHHHHHHH-HHHHHHhCCCCCCeECHHHHHHHHHHHhhhhccCHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHH
Confidence 34444444 68999999 999999999999999873333343 3578899888 6999999999998777654
No 52
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=97.25 E-value=0.00094 Score=64.53 Aligned_cols=56 Identities=14% Similarity=0.141 Sum_probs=48.6
Q ss_pred HHHHHHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHHHHHHHHHHHhc
Q psy4949 59 GLLLNWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAI 127 (275)
Q Consensus 59 ~l~~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i 127 (275)
.-.+..+|++||.++||.|+..||.. ...+|..+ .|+||.|+.+||..++.+.+++
T Consensus 333 ~~~l~~aF~~~D~dgdG~Is~~E~~~-------------~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~~ 389 (391)
T PRK12309 333 THAAQEIFRLYDLDGDGFITREEWLG-------------SDAVFDALDLNHDGKITPEEMRAGLGAALRL 389 (391)
T ss_pred hHHHHHHHHHhCCCCCCcCcHHHHHH-------------HHHHHHHhCCCCCCCCcHHHHHHHHHHHHHh
Confidence 34467899999999999999999942 46789999 6999999999999999988776
No 53
>KOG4347|consensus
Probab=97.24 E-value=0.0011 Score=66.63 Aligned_cols=60 Identities=15% Similarity=0.226 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhhc-cCCCceeHHHH
Q psy4949 57 LSGLLLNWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQLC-DCNGHLVAWKF 117 (275)
Q Consensus 57 ~~~l~~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly~-D~nG~i~~~el 117 (275)
-+..++..+|+.+|.+.+|-|+|.+++.||+.||.|.+.+|++.+|+||. +++ ..++++.
T Consensus 552 ~s~~~~~rlF~l~D~s~~g~Ltf~~lv~gL~~l~~~~~~ek~~l~y~lh~~p~~-~~d~e~~ 612 (671)
T KOG4347|consen 552 VSLIFLERLFRLLDDSMTGLLTFKDLVSGLSILKAGDALEKLKLLYKLHDPPAD-ELDREEV 612 (671)
T ss_pred HHHHHHHHHHHhcccCCcceeEHHHHHHHHHHHHhhhHHHHHHHHHhhccCCcc-ccccccc
Confidence 34556778999999999999999999999999999999999999999993 555 6777665
No 54
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=97.20 E-value=0.002 Score=49.43 Aligned_cols=61 Identities=13% Similarity=0.088 Sum_probs=48.7
Q ss_pred HHHHHhhcC-CC-CCeeehHHHHHHHHHhcC-----CChhhHHHHhchhh-ccCCCceeHHHHHHHHHH
Q psy4949 63 NWLLSAYSV-ES-LGRIRVFSIKVALATMCS-----GKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQD 123 (275)
Q Consensus 63 ~~lf~~fD~-~~-~G~I~~~ef~~aLs~Lc~-----G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~ 123 (275)
..+|.+||. ++ +|+|+..+++.+|....+ ...++-++.+|+.+ .|++|.|+..+|..++..
T Consensus 11 ~~~F~~~D~~dg~dG~Is~~El~~~l~~~~g~~lg~~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~~ 79 (94)
T cd05031 11 ILTFHRYAGKDGDKNTLSRKELKKLMEKELSEFLKNQKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVAG 79 (94)
T ss_pred HHHHHHHhccCCCCCeECHHHHHHHHHHHhHHHhhccccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHH
Confidence 468999997 97 799999999999975332 23445578889888 688999999999877764
No 55
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=97.16 E-value=0.0025 Score=48.67 Aligned_cols=69 Identities=20% Similarity=0.170 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHhhc-CCCCC-eeehHHHHHHHHH-h----cCCChhhHHHHhchhh-ccCCCceeHHHHHHHHHHH
Q psy4949 55 EVLSGLLLNWLLSAYS-VESLG-RIRVFSIKVALAT-M----CSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDV 124 (275)
Q Consensus 55 ~~~~~l~~~~lf~~fD-~~~~G-~I~~~ef~~aLs~-L----c~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i 124 (275)
+.+.+-+. -+|.+|| .+++| +|+..+++.+|.. + ......+..+.+|+.+ .|++|.|+-++|..++..+
T Consensus 5 e~~~~~l~-~~F~~fDd~dg~G~~Is~~El~~~l~~~lg~~~~~~~s~~~v~~i~~~~D~d~~G~I~f~eF~~l~~~~ 81 (92)
T cd05025 5 ETAMETLI-NVFHAHSGKEGDKYKLSKKELKDLLQTELSDFLDAQKDADAVDKIMKELDENGDGEVDFQEFVVLVAAL 81 (92)
T ss_pred HHHHHHHH-HHHHHHhcccCCCCeECHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHH
Confidence 44444443 6899997 99999 5999999999964 3 1123456789999998 6889999999998887754
No 56
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=97.10 E-value=0.002 Score=44.03 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=42.6
Q ss_pred CCCeeehHHHHHHHHHhcCC-ChhhHHHHhchhh-ccCCCceeHHHHHHHHHH
Q psy4949 73 SLGRIRVFSIKVALATMCSG-KLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQD 123 (275)
Q Consensus 73 ~~G~I~~~ef~~aLs~Lc~G-~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~ 123 (275)
.+|.|+..+|+.+|..+--. --++.++.+|+.+ .|++|.|+..||..+++.
T Consensus 1 ~~G~i~~~~~~~~l~~~g~~~~s~~e~~~l~~~~D~~~~G~I~~~EF~~~~~~ 53 (54)
T PF13833_consen 1 KDGKITREEFRRALSKLGIKDLSEEEVDRLFREFDTDGDGYISFDEFISMMQR 53 (54)
T ss_dssp SSSEEEHHHHHHHHHHTTSSSSCHHHHHHHHHHHTTSSSSSEEHHHHHHHHHH
T ss_pred CcCEECHHHHHHHHHHhCCCCCCHHHHHHHHHhcccCCCCCCCHHHHHHHHHh
Confidence 47999999999999777545 5566689999999 799999999999887764
No 57
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=97.08 E-value=0.0035 Score=47.97 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=50.7
Q ss_pred HHHHHhhc-CCCCC-eeehHHHHHHHHH----hcCCChh-hHHHHhchhh-ccCCCceeHHHHHHHHHHH
Q psy4949 63 NWLLSAYS-VESLG-RIRVFSIKVALAT----MCSGKLM-DKLRYIFSQL-CDCNGHLVAWKFNEYLQDV 124 (275)
Q Consensus 63 ~~lf~~fD-~~~~G-~I~~~ef~~aLs~----Lc~G~l~-dKlr~~F~ly-~D~nG~i~~~el~~~L~~i 124 (275)
.-+|++|| ++++| .|+..+++..|.. +.+..+. +.+.-+++.+ .|++|.|+-++|..++..+
T Consensus 11 ~~aF~~fD~~dgdG~~I~~~eL~~ll~~~~~~~lg~~~~~~~v~~~i~~~D~n~dG~v~f~eF~~li~~~ 80 (88)
T cd05027 11 IDVFHQYSGREGDKHKLKKSELKELINNELSHFLEEIKEQEVVDKVMETLDSDGDGECDFQEFMAFVAMV 80 (88)
T ss_pred HHHHHHhcccCCCcCEECHHHHHHHHHHHhHHHhcCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHH
Confidence 46899998 89999 6999999999997 3444444 4489999988 6889999999998777654
No 58
>cd00213 S-100 S-100: S-100 domain, which represents the largest family within the superfamily of proteins carrying the Ca-binding EF-hand motif. Note that this S-100 hierarchy contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. Intracellularly, S100 proteins act as Ca-signaling or Ca-buffering proteins. The most unusual characteristic of certain S100 proteins is their occurrence in extracellular space, where they act in a cytokine-like manner through RAGE, the receptor for advanced glycation products. Structural data suggest that many S100 members exist within cells as homo- or heterodimers and even oligomers; oligomerization contributes to their functional diversification. Upon binding calcium, most S100 proteins change conformation to a more open structure exposing a hydrophobic cleft. This hydrophobic surface represents th
Probab=96.80 E-value=0.003 Score=47.58 Aligned_cols=63 Identities=16% Similarity=0.213 Sum_probs=45.5
Q ss_pred hHHHHhchhh-c--cCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcC-----CCcccHHHHHHHHh
Q psy4949 96 DKLRYIFSQL-C--DCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG-----NGKVTVNDFMDTMM 164 (275)
Q Consensus 96 dKlr~~F~ly-~--D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~-----d~~Is~~eFl~~~~ 164 (275)
+.++-+|..| . |++|.|+..++..+++..+ |+..+...+++.++.+|.. +|.|+.++|+.++.
T Consensus 8 ~~l~~~F~~~D~~~~~~G~Is~~el~~~l~~~~------g~~~~~~~~~~ei~~i~~~~d~~~~g~I~f~eF~~~~~ 78 (88)
T cd00213 8 ETIIDVFHKYSGKEGDKDTLSKKELKELLETEL------PNFLKNQKDPEAVDKIMKDLDVNKDGKVDFQEFLVLIG 78 (88)
T ss_pred HHHHHHHHHHhhccCCCCcCcHHHHHHHHHHHh------hhhccCCCCHHHHHHHHHHhccCCCCcCcHHHHHHHHH
Confidence 4578899999 6 6999999999998887521 2222223355666666643 68999999999875
No 59
>KOG0036|consensus
Probab=96.79 E-value=0.01 Score=57.14 Aligned_cols=93 Identities=17% Similarity=0.208 Sum_probs=68.8
Q ss_pred HHHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCc
Q psy4949 62 LNWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYT 140 (275)
Q Consensus 62 ~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~ 140 (275)
+.-+|++-|.|++|++|+.||+--+. .-+.++.-+|+-+ .++||.|+-.|+-..|+++ |-..++...
T Consensus 53 ~~~l~~~~d~~~dg~vDy~eF~~Y~~-----~~E~~l~~~F~~iD~~hdG~i~~~Ei~~~l~~~-------gi~l~de~~ 120 (463)
T KOG0036|consen 53 AKMLFSAMDANRDGRVDYSEFKRYLD-----NKELELYRIFQSIDLEHDGKIDPNEIWRYLKDL-------GIQLSDEKA 120 (463)
T ss_pred HHHHHHhcccCcCCcccHHHHHHHHH-----HhHHHHHHHHhhhccccCCccCHHHHHHHHHHh-------CCccCHHHH
Confidence 45688999999999999999998887 4577888899988 6999999999999888875 111111111
Q ss_pred hHHHhhhhcC-CCcccHHHHHHHHhcC
Q psy4949 141 DTLAQEIFSG-NGKVTVNDFMDTMMSE 166 (275)
Q Consensus 141 e~~v~~cF~~-d~~Is~~eFl~~~~~d 166 (275)
+..++..|+. .+.|.++||-+.++--
T Consensus 121 ~k~~e~~d~~g~~~I~~~e~rd~~ll~ 147 (463)
T KOG0036|consen 121 AKFFEHMDKDGKATIDLEEWRDHLLLY 147 (463)
T ss_pred HHHHHHhccCCCeeeccHHHHhhhhcC
Confidence 2234444443 4789999999988654
No 60
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.78 E-value=0.012 Score=45.48 Aligned_cols=74 Identities=12% Similarity=0.160 Sum_probs=51.8
Q ss_pred HHHHHHHHHHcCCCCcCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcCCCCCeeehHHHHH
Q psy4949 5 IWNVIEAFRENGLNAIELQSDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSIKV 84 (275)
Q Consensus 5 ~~~~~e~f~~~~l~~~~~~~~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~~ 84 (275)
|.++|++|...- .+ ...|+..|+..+|+.=+-.+.+. +-|++ + +.-++...|.|+||.|+|.||..
T Consensus 7 i~~lI~~FhkYa---G~-~~tLsk~Elk~Ll~~Elp~~l~~-----~~d~~-~----vd~im~~LD~n~Dg~vdF~EF~~ 72 (91)
T cd05024 7 MEKMMLTFHKFA---GE-KNYLNRDDLQKLMEKEFSEFLKN-----QNDPM-A----VDKIMKDLDDCRDGKVGFQSFFS 72 (91)
T ss_pred HHHHHHHHHHHc---CC-CCcCCHHHHHHHHHHHhHHHHcC-----CCCHH-H----HHHHHHHhCCCCCCcCcHHHHHH
Confidence 567888997765 22 34899999888887766666543 22333 3 45667788999999999999965
Q ss_pred H---HHHhcCC
Q psy4949 85 A---LATMCSG 92 (275)
Q Consensus 85 a---Ls~Lc~G 92 (275)
- |++.|..
T Consensus 73 Lv~~l~~ac~~ 83 (91)
T cd05024 73 LIAGLLIACND 83 (91)
T ss_pred HHHHHHHHHHH
Confidence 4 4444443
No 61
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=96.78 E-value=0.0095 Score=45.58 Aligned_cols=70 Identities=14% Similarity=0.226 Sum_probs=53.3
Q ss_pred hHHHHHHHHHHHHHhhcC-CC-CCeeehHHHHHHHHH-hcCC--ChhhHHHHhchhh-ccCCCceeHHHHHHHHHHH
Q psy4949 54 VEVLSGLLLNWLLSAYSV-ES-LGRIRVFSIKVALAT-MCSG--KLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDV 124 (275)
Q Consensus 54 ~~~~~~l~~~~lf~~fD~-~~-~G~I~~~ef~~aLs~-Lc~G--~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i 124 (275)
.+.+..-+. -+|..||. ++ +|+|+..||+.+|.- ++-| ...+-+..+|+.+ .|++|.|+.++|..++..+
T Consensus 5 ~e~~~~~~i-~~F~~y~~~~~~~g~Is~~EL~~~l~~~~~lg~k~t~~ev~~m~~~~D~d~dG~Idf~EFv~lm~~l 80 (88)
T cd05029 5 LDQAIGLLV-AIFHKYSGREGDKNTLSKKELKELIQKELTIGSKLQDAEIAKLMEDLDRNKDQEVNFQEYVTFLGAL 80 (88)
T ss_pred HHHHHHHHH-HHHHHHHccCCCCCEECHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcCCCCCCCcHHHHHHHHHHH
Confidence 455555544 57999997 77 999999999999963 2223 2455678889888 6899999999998887765
No 62
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.77 E-value=0.0024 Score=39.02 Aligned_cols=25 Identities=12% Similarity=0.147 Sum_probs=19.8
Q ss_pred HHHHHhhcCCCCCeeehHHHHHHHH
Q psy4949 63 NWLLSAYSVESLGRIRVFSIKVALA 87 (275)
Q Consensus 63 ~~lf~~fD~~~~G~I~~~ef~~aLs 87 (275)
.-+|+.||.+++|+|++.||..+|.
T Consensus 3 ~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 3 REAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 4578888888888888888888887
No 63
>PLN02964 phosphatidylserine decarboxylase
Probab=96.77 E-value=0.008 Score=61.49 Aligned_cols=87 Identities=14% Similarity=0.248 Sum_probs=60.9
Q ss_pred HHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhH----HHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCC
Q psy4949 64 WLLSAYSVESLGRIRVFSIKVALATMCSGKLMDK----LRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFS 138 (275)
Q Consensus 64 ~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dK----lr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~ 138 (275)
-.|..||+|++|+| +..++-.+-...+.+. ++.+|+.+ .|++|.|+.+||..++..+ ++.
T Consensus 147 eaF~lfD~dgdG~i----Lg~ilrslG~~~pte~e~~fi~~mf~~~D~DgdG~IdfdEFl~lL~~l-------g~~---- 211 (644)
T PLN02964 147 ESFDLLDPSSSNKV----VGSIFVSCSIEDPVETERSFARRILAIVDYDEDGQLSFSEFSDLIKAF-------GNL---- 211 (644)
T ss_pred HHHHHHCCCCCCcC----HHHHHHHhCCCCCCHHHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHh-------ccC----
Confidence 46899999999997 4444443331123333 68899999 5899999999998887642 221
Q ss_pred CchHHHhhhhcC-----CCcccHHHHHHHHhc
Q psy4949 139 YTDTLAQEIFSG-----NGKVTVNDFMDTMMS 165 (275)
Q Consensus 139 ~~e~~v~~cF~~-----d~~Is~~eFl~~~~~ 165 (275)
.+++.++..|.. +|.|+.+||.+.+..
T Consensus 212 ~seEEL~eaFk~fDkDgdG~Is~dEL~~vL~~ 243 (644)
T PLN02964 212 VAANKKEELFKAADLNGDGVVTIDELAALLAL 243 (644)
T ss_pred CCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHh
Confidence 245556666653 689999999997754
No 64
>cd05022 S-100A13 S-100A13: S-100A13 domain found in proteins similar to S100A13. S100A13 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A13 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100A13 is involved in the cellular export of interleukin-1 (IL-1) and of fibroblast growth factor-1 (FGF-1), which plays an important role in angiogenesis and tissue regeneration. Export is based on the CuII-dependent formation of multiprotein complexes containing the S100A13 protein. Assembly of these complexes occurs near the inner surface of the plasma membrane. Binding of two Ca(II) ions per monomer triggers key conformational changes leading to the creation of two identical and symmetrical Cu(II)-binding sites on the surface of the protein, close to the interface between the two monomers. These Cu
Probab=96.68 E-value=0.0052 Score=47.28 Aligned_cols=71 Identities=11% Similarity=0.169 Sum_probs=50.3
Q ss_pred HHHHHHHHHHcCCCCcCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcCCCCCeeehHHHHH
Q psy4949 5 IWNVIEAFRENGLNAIELQSDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSIKV 84 (275)
Q Consensus 5 ~~~~~e~f~~~~l~~~~~~~~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~~ 84 (275)
|.+++++|+...-. +.+..|+.++|..+|++-. |. .++... -+.-+++..|.|+||+|+|.||..
T Consensus 7 i~~l~~~F~~fd~~--~~~g~i~~~ELk~ll~~el-------g~--~ls~~~----~v~~mi~~~D~d~DG~I~F~EF~~ 71 (89)
T cd05022 7 IETLVSNFHKASVK--GGKESLTASEFQELLTQQL-------PH--LLKDVE----GLEEKMKNLDVNQDSKLSFEEFWE 71 (89)
T ss_pred HHHHHHHHHHHhCC--CCCCeECHHHHHHHHHHHh-------hh--hccCHH----HHHHHHHHhCCCCCCCCcHHHHHH
Confidence 56788899888753 4567899999777776522 21 122111 246778999999999999999977
Q ss_pred HHHHhc
Q psy4949 85 ALATMC 90 (275)
Q Consensus 85 aLs~Lc 90 (275)
.+.-|+
T Consensus 72 l~~~l~ 77 (89)
T cd05022 72 LIGELA 77 (89)
T ss_pred HHHHHH
Confidence 766554
No 65
>PF00036 EF-hand_1: EF hand; InterPro: IPR018248 Many calcium-binding proteins belong to the same evolutionary family and share a type of calcium-binding domain known as the EF-hand. This type of domain consists of a twelve residue loop flanked on both sides by a twelve residue alpha-helical domain. In an EF-hand loop the calcium ion is coordinated in a pentagonal bipyramidal configuration. The six residues involved in the binding are in positions 1, 3, 5, 7, 9 and 12; these residues are denoted by X, Y, Z, -Y, -X and -Z. The invariant Glu or Asp at position 12 provides two oxygens for liganding Ca (bidentate ligand).; PDB: 1BJF_A 1XFW_R 1XFV_O 2K0J_A 2F3Z_A 3BYA_A 1XFU_Q 2R28_B 1ZOT_B 3G43_D ....
Probab=96.67 E-value=0.0019 Score=39.37 Aligned_cols=26 Identities=23% Similarity=0.431 Sum_probs=23.3
Q ss_pred HHHhchhh-ccCCCceeHHHHHHHHHH
Q psy4949 98 LRYIFSQL-CDCNGHLVAWKFNEYLQD 123 (275)
Q Consensus 98 lr~~F~ly-~D~nG~i~~~el~~~L~~ 123 (275)
++++|+.| .|+||.|+.+||..+++.
T Consensus 2 ~~~~F~~~D~d~dG~I~~~Ef~~~~~~ 28 (29)
T PF00036_consen 2 LKEAFREFDKDGDGKIDFEEFKEMMKK 28 (29)
T ss_dssp HHHHHHHHSTTSSSEEEHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCcCCHHHHHHHHHh
Confidence 57899999 799999999999988875
No 66
>cd05026 S-100Z S-100Z: S-100Z domain found in proteins similar to S100Z. S100Z is a member of the S100 domain family within the EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100Z group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately.S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control. S100Z is normally expressed in various tissues, with its highest level of expression being in spleen and leukocytes. The function of S100Z remains unclear. Preliminary structural data suggests that S100Z is homodimer, however a heterodimer with S100P has been reported. S100Z is capable of binding calcium ions. When calcium binds to S110Z, the protein experiences a conformational change, which exposes hydrophobic surfac
Probab=96.62 E-value=0.014 Score=44.98 Aligned_cols=74 Identities=12% Similarity=0.141 Sum_probs=48.2
Q ss_pred HHHHHHHHHHcCCCCcCCCC-CCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcCCCCCeeehHHHH
Q psy4949 5 IWNVIEAFRENGLNAIELQS-DVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSIK 83 (275)
Q Consensus 5 ~~~~~e~f~~~~l~~~~~~~-~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~ 83 (275)
|..++++|+..--.- .+. .|+..+|..++......... ...+.+ . ++-+++.+|.|++|.|++.||.
T Consensus 9 ~~~~~~~F~~~dd~d--gdg~~Is~~EL~~ll~~~~~~~~~-----~~~~~~-~----v~~i~~elD~n~dG~Idf~EF~ 76 (93)
T cd05026 9 MDTLIRIFHNYSGKE--GDRYKLSKGELKELLQRELTDFLS-----SQKDPM-L----VDKIMNDLDSNKDNEVDFNEFV 76 (93)
T ss_pred HHHHHHHHHHHHccC--CCCCEECHHHHHHHHHHHhHHhcc-----cccCHH-H----HHHHHHHhCCCCCCCCCHHHHH
Confidence 556778887766321 244 49999977777663322111 122222 2 4567788999999999999998
Q ss_pred HHHHHhc
Q psy4949 84 VALATMC 90 (275)
Q Consensus 84 ~aLs~Lc 90 (275)
..+..|+
T Consensus 77 ~l~~~l~ 83 (93)
T cd05026 77 VLVAALT 83 (93)
T ss_pred HHHHHHH
Confidence 8776654
No 67
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=96.58 E-value=0.016 Score=44.46 Aligned_cols=73 Identities=16% Similarity=0.276 Sum_probs=49.2
Q ss_pred HHHHHHHHHH-cCCCCcCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcCCCCCeeehHHHH
Q psy4949 5 IWNVIEAFRE-NGLNAIELQSDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSIK 83 (275)
Q Consensus 5 ~~~~~e~f~~-~~l~~~~~~~~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~ 83 (275)
|.+++.+|+. .+-.. ....|+..|+..++..-+..+.+. .++..+. .-+++.+|.|++|.|+|.||.
T Consensus 8 i~~l~~~F~~y~~~dg--~~~~Ls~~Elk~ll~~e~~~~~~~-----~~~~~~~-----~~ll~~~D~d~DG~I~f~EF~ 75 (89)
T cd05023 8 IESLIAVFQKYAGKDG--DSYQLSKTEFLSFMNTELASFTKN-----QKDPGVL-----DRMMKKLDLNSDGQLDFQEFL 75 (89)
T ss_pred HHHHHHHHHHHhccCC--CcCeECHHHHHHHHHHhhhHhhcC-----CCCHHHH-----HHHHHHcCCCCCCcCcHHHHH
Confidence 5567888887 54332 123799999887777766555431 2333333 447789999999999999997
Q ss_pred HHHHHh
Q psy4949 84 VALATM 89 (275)
Q Consensus 84 ~aLs~L 89 (275)
..+.-|
T Consensus 76 ~l~~~l 81 (89)
T cd05023 76 NLIGGL 81 (89)
T ss_pred HHHHHH
Confidence 655443
No 68
>PF13405 EF-hand_6: EF-hand domain; PDB: 2AMI_A 3QRX_A 1W7J_B 1OE9_B 1W7I_B 1KFU_S 1KFX_S 2BL0_B 1Y1X_B 3MSE_B ....
Probab=96.56 E-value=0.0026 Score=38.90 Aligned_cols=26 Identities=23% Similarity=0.337 Sum_probs=23.9
Q ss_pred HHHHhchhh-ccCCCceeHHHHHHHHH
Q psy4949 97 KLRYIFSQL-CDCNGHLVAWKFNEYLQ 122 (275)
Q Consensus 97 Klr~~F~ly-~D~nG~i~~~el~~~L~ 122 (275)
+++.+|+.| .|+||.|+.+||..+|+
T Consensus 1 ~l~~~F~~~D~d~dG~I~~~el~~~l~ 27 (31)
T PF13405_consen 1 RLREAFKMFDKDGDGFIDFEELRAILR 27 (31)
T ss_dssp HHHHHHHHH-TTSSSEEEHHHHHHHHH
T ss_pred CHHHHHHHHCCCCCCcCcHHHHHHHHH
Confidence 578999999 79999999999999887
No 69
>cd00052 EH Eps15 homology domain; found in proteins implicated in endocytosis, vesicle transport, and signal transduction. The alignment contains a pair of EF-hand motifs, typically one of them is canonical and binds to Ca2+, while the other may not bind to Ca2+. A hydrophobic binding pocket is formed by residues from both EF-hand motifs. The EH domain binds to proteins containing NPF (class I), [WF]W or SWG (class II), or H[TS]F (class III) sequence motifs.
Probab=96.52 E-value=0.005 Score=43.22 Aligned_cols=54 Identities=20% Similarity=0.294 Sum_probs=40.0
Q ss_pred HHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcC-----CCcccHHHHHHHHh
Q psy4949 98 LRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG-----NGKVTVNDFMDTMM 164 (275)
Q Consensus 98 lr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~-----d~~Is~~eFl~~~~ 164 (275)
|+.+|+.+ .|++|.|+..++..+++.. | .+++.++.+|.. +|.|+.+||+.++.
T Consensus 1 ~~~~F~~~D~~~~G~i~~~el~~~l~~~-------g------~~~~~~~~i~~~~d~~~~g~i~~~ef~~~~~ 60 (67)
T cd00052 1 YDQIFRSLDPDGDGLISGDEARPFLGKS-------G------LPRSVLAQIWDLADTDKDGKLDKEEFAIAMH 60 (67)
T ss_pred ChHHHHHhCCCCCCcCcHHHHHHHHHHc-------C------CCHHHHHHHHHHhcCCCCCcCCHHHHHHHHH
Confidence 46789998 6889999999998887642 1 134445555543 68999999999774
No 70
>PF14658 EF-hand_9: EF-hand domain
Probab=96.52 E-value=0.0099 Score=43.30 Aligned_cols=59 Identities=17% Similarity=0.267 Sum_probs=51.4
Q ss_pred HHHhhcCCCCCeeehHHHHHHHHHhcC-CChhhHHHHhchhhc-cCC-CceeHHHHHHHHHH
Q psy4949 65 LLSAYSVESLGRIRVFSIKVALATMCS-GKLMDKLRYIFSQLC-DCN-GHLVAWKFNEYLQD 123 (275)
Q Consensus 65 lf~~fD~~~~G~I~~~ef~~aLs~Lc~-G~l~dKlr~~F~ly~-D~n-G~i~~~el~~~L~~ 123 (275)
.|.+||++++|+|.+..++.-|-.+-. +..+..|.-+-+.+. ++. |.|+.+.|..+++.
T Consensus 3 ~F~~fD~~~tG~V~v~~l~~~Lra~~~~~p~e~~Lq~l~~elDP~g~~~~v~~d~F~~iM~~ 64 (66)
T PF14658_consen 3 AFDAFDTQKTGRVPVSDLITYLRAVTGRSPEESELQDLINELDPEGRDGSVNFDTFLAIMRD 64 (66)
T ss_pred chhhcCCcCCceEeHHHHHHHHHHHcCCCCcHHHHHHHHHHhCCCCCCceEeHHHHHHHHHH
Confidence 589999999999999999999998887 899999999999883 444 88999999877764
No 71
>KOG0044|consensus
Probab=96.52 E-value=0.011 Score=51.77 Aligned_cols=62 Identities=23% Similarity=0.338 Sum_probs=47.6
Q ss_pred HHHHHHHhhcCCCCCeeehHHHHH---HHHHhcCC--------ChhhHHHHhchhh-ccCCCceeHHHHHHHHH
Q psy4949 61 LLNWLLSAYSVESLGRIRVFSIKV---ALATMCSG--------KLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQ 122 (275)
Q Consensus 61 ~~~~lf~~fD~~~~G~I~~~ef~~---aLs~Lc~G--------~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~ 122 (275)
-++|.|+.||.|++|.|+-.|+.- ++..+.+. ++++.-..+|+.. .|++|.+|.++|....+
T Consensus 101 kl~w~F~lyD~dgdG~It~~Eml~iv~~i~~m~~~~~~~~~~~~~~~~v~~if~k~D~n~Dg~lT~eef~~~~~ 174 (193)
T KOG0044|consen 101 KLKWAFRLYDLDGDGYITKEEMLKIVQAIYQMTGSKALPEDEETPEERVDKIFSKMDKNKDGKLTLEEFIEGCK 174 (193)
T ss_pred HhhhhheeecCCCCceEcHHHHHHHHHHHHHHcccccCCcccccHHHHHHHHHHHcCCCCCCcccHHHHHHHhh
Confidence 467999999999999999887643 33334332 3666668899999 79999999999865443
No 72
>cd05031 S-100A10_like S-100A10_like: S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1_like group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=96.43 E-value=0.0058 Score=46.89 Aligned_cols=64 Identities=16% Similarity=0.320 Sum_probs=45.5
Q ss_pred hhHHHHhchhhc--cC-CCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcC-----CCcccHHHHHHHHh
Q psy4949 95 MDKLRYIFSQLC--DC-NGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG-----NGKVTVNDFMDTMM 164 (275)
Q Consensus 95 ~dKlr~~F~ly~--D~-nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~-----d~~Is~~eFl~~~~ 164 (275)
.+.++.+|+.|+ |+ +|.|+..+|..+|+.. ++..+|. ..+++.++.+|.. +|.|+.+||+..+.
T Consensus 7 ~~~l~~~F~~~D~~dg~dG~Is~~El~~~l~~~--~g~~lg~----~~s~~ei~~~~~~~D~~~dg~I~f~eF~~l~~ 78 (94)
T cd05031 7 MESLILTFHRYAGKDGDKNTLSRKELKKLMEKE--LSEFLKN----QKDPMAVDKIMKDLDQNRDGKVNFEEFVSLVA 78 (94)
T ss_pred HHHHHHHHHHHhccCCCCCeECHHHHHHHHHHH--hHHHhhc----cccHHHHHHHHHHhCCCCCCcCcHHHHHHHHH
Confidence 456889999994 66 6999999999988752 1322332 2245566666643 68999999998764
No 73
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.41 E-value=0.029 Score=42.70 Aligned_cols=75 Identities=11% Similarity=0.162 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCCCcCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcCCCCCeeehHHHHH
Q psy4949 5 IWNVIEAFRENGLNAIELQSDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSIKV 84 (275)
Q Consensus 5 ~~~~~e~f~~~~l~~~~~~~~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~~ 84 (275)
|.++++.|++.--+-. ....|+..+|..++...+-... + ...+ +. -++-+|+.+|.+++|.|++.+|..
T Consensus 7 i~~~~~~f~~y~~~~~-~~~~Is~~El~~ll~~~~g~~~----t-~~~~-~~----~v~~i~~~~D~d~dG~I~f~eF~~ 75 (88)
T cd05030 7 IETIINVFHQYSVRKG-HPDTLYKKEFKQLVEKELPNFL----K-KEKN-QK----AIDKIFEDLDTNQDGQLSFEEFLV 75 (88)
T ss_pred HHHHHHHHHHHhccCC-CcccCCHHHHHHHHHHHhhHhh----c-cCCC-HH----HHHHHHHHcCCCCCCcCcHHHHHH
Confidence 5667888877664432 3567999997777765432211 1 1112 22 246788999999999999999998
Q ss_pred HHHHhc
Q psy4949 85 ALATMC 90 (275)
Q Consensus 85 aLs~Lc 90 (275)
.+..+.
T Consensus 76 ~~~~~~ 81 (88)
T cd05030 76 LVIKVG 81 (88)
T ss_pred HHHHHH
Confidence 877553
No 74
>cd00051 EFh EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to the activation or inactivation of target proteins. EF-hands tend to occur in pairs or higher copy numbers.
Probab=96.35 E-value=0.0076 Score=40.30 Aligned_cols=56 Identities=21% Similarity=0.385 Sum_probs=40.1
Q ss_pred HHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcC-----CCcccHHHHHHHH
Q psy4949 97 KLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG-----NGKVTVNDFMDTM 163 (275)
Q Consensus 97 Klr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~-----d~~Is~~eFl~~~ 163 (275)
+++.+|+.| .|++|.|+.+++..+++.. + ...+++.+...|.. ++.|+.++|+.++
T Consensus 1 ~~~~~f~~~d~~~~g~l~~~e~~~~l~~~-------~----~~~~~~~~~~~~~~~~~~~~~~l~~~ef~~~~ 62 (63)
T cd00051 1 ELREAFRLFDKDGDGTISADELKAALKSL-------G----EGLSEEEIDEMIREVDKDGDGKIDFEEFLELM 62 (63)
T ss_pred CHHHHHHHhCCCCCCcCcHHHHHHHHHHh-------C----CCCCHHHHHHHHHHhCCCCCCeEeHHHHHHHh
Confidence 367889999 6889999999998888753 1 11234444444443 5799999999865
No 75
>cd05030 calgranulins Calgranulins: S-100 domain found in proteins belonging to the Calgranulin subgroup of the S100 family of EF-hand calcium-modulated proteins, including S100A8, S100A9, and S100A12 . Note that the S-100 hierarchy, to which this Calgranulin group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. These proteins are expressed mainly in granulocytes, and are involved in inflammation, allergy, and neuritogenesis, as well as in host-parasite response. Calgranulins are modulated not only by calcium, but also by other metals such as zinc and copper. Structural data suggested that calgranulins may exist in multiple structural forms, homodimers, as well as hetero-oligomers. For example, the S100A8/S100A9 complex called calprotectin plays important roles in the regulation of inflammatory processes, wound repair, and regulating zinc-dependent enzymes as well as microbial growth.
Probab=96.12 E-value=0.024 Score=43.18 Aligned_cols=69 Identities=19% Similarity=0.184 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHhhcCC--CCCeeehHHHHHHHHHhcC-----CChhhHHHHhchhh-ccCCCceeHHHHHHHHHHH
Q psy4949 55 EVLSGLLLNWLLSAYSVE--SLGRIRVFSIKVALATMCS-----GKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDV 124 (275)
Q Consensus 55 ~~~~~l~~~~lf~~fD~~--~~G~I~~~ef~~aLs~Lc~-----G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i 124 (275)
+.++.-+. .+|+-|+.. .+|.|+..|++..|...-+ +..++.+..+|+.+ .|++|.|+-++|..++..+
T Consensus 4 e~~i~~~~-~~f~~y~~~~~~~~~Is~~El~~ll~~~~g~~~t~~~~~~~v~~i~~~~D~d~dG~I~f~eF~~~~~~~ 80 (88)
T cd05030 4 EKAIETII-NVFHQYSVRKGHPDTLYKKEFKQLVEKELPNFLKKEKNQKAIDKIFEDLDTNQDGQLSFEEFLVLVIKV 80 (88)
T ss_pred HHHHHHHH-HHHHHHhccCCCcccCCHHHHHHHHHHHhhHhhccCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 44544444 788999966 4899999999999963322 23367789999999 6889999999998887765
No 76
>cd05027 S-100B S-100B: S-100B domain found in proteins similar to S100B. S100B is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100B group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100B is most abundant in glial cells of the central nervous system, predominately in astrocytes. S100B is involved in signal transduction via the inhibition of protein phoshorylation, regulation of enzyme activity and by affecting the calcium homeostasis. Upon calcium binding the S100B homodimer changes conformation to expose a hydrophobic cleft, which represents the interaction site of S100B with its more than 20 known target proteins. These target proteins include several cellular architecture proteins such as tubulin and GFAP; S100B can inhibit polymerization of these oligomeric molecules. Furthermore, S100B i
Probab=96.05 E-value=0.052 Score=41.49 Aligned_cols=72 Identities=10% Similarity=0.201 Sum_probs=47.6
Q ss_pred HHHHHHHHHHcC-CCCcCCCC-CCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcCCCCCeeehHHH
Q psy4949 5 IWNVIEAFRENG-LNAIELQS-DVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSI 82 (275)
Q Consensus 5 ~~~~~e~f~~~~-l~~~~~~~-~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef 82 (275)
|.+++++|+... -+ .+. .|+..+|..+|+.=+..+....| +.++ ++-+++..|.|++|+|+|.+|
T Consensus 7 ~~~l~~aF~~fD~~d---gdG~~I~~~eL~~ll~~~~~~~lg~~~-----~~~~-----v~~~i~~~D~n~dG~v~f~eF 73 (88)
T cd05027 7 MVALIDVFHQYSGRE---GDKHKLKKSELKELINNELSHFLEEIK-----EQEV-----VDKVMETLDSDGDGECDFQEF 73 (88)
T ss_pred HHHHHHHHHHhcccC---CCcCEECHHHHHHHHHHHhHHHhcCCC-----CHHH-----HHHHHHHhCCCCCCcCcHHHH
Confidence 456777887764 23 245 59999988888764444433222 2222 345567789999999999999
Q ss_pred HHHHHHh
Q psy4949 83 KVALATM 89 (275)
Q Consensus 83 ~~aLs~L 89 (275)
...+.-+
T Consensus 74 ~~li~~~ 80 (88)
T cd05027 74 MAFVAMV 80 (88)
T ss_pred HHHHHHH
Confidence 7666544
No 77
>KOG0036|consensus
Probab=96.03 E-value=0.031 Score=53.99 Aligned_cols=62 Identities=16% Similarity=0.321 Sum_probs=54.6
Q ss_pred HHHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHH-HHhchhh-ccCCCceeHHHHHHHHHH
Q psy4949 62 LNWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKL-RYIFSQL-CDCNGHLVAWKFNEYLQD 123 (275)
Q Consensus 62 ~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKl-r~~F~ly-~D~nG~i~~~el~~~L~~ 123 (275)
..-+|.-||.+++|.|++.++.-||..|...++..++ +-+|+-. +|.+|.++-++|..++.+
T Consensus 16 ~~~lf~~lD~~~~g~~d~~~l~k~~~~l~~~~~~~~~~~~l~~~~d~~~dg~vDy~eF~~Y~~~ 79 (463)
T KOG0036|consen 16 IRCLFKELDSKNDGQVDLDQLEKGLEKLDHPKPNYEAAKMLFSAMDANRDGRVDYSEFKRYLDN 79 (463)
T ss_pred HHHHHHHhccCCCCceeHHHHHHHHHhcCCCCCchHHHHHHHHhcccCcCCcccHHHHHHHHHH
Confidence 3468999999999999999999999999999777777 5678877 799999999999998864
No 78
>cd05025 S-100A1 S-100A1: S-100A1 domain found in proteins similar to S100A1. S100A1 is a calcium-binding protein belonging to a large S100 vertebrate-specific protein family within the EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A1 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. As is the case with many other members of S100 protein family, S100A1 is implicated in intracellular and extracellular regulatory activities, including interaction with myosin-associated twitchin kinase, actin-capping protein CapZ, sinapsin I, and tubulin. Structural data suggests that S100A1 proteins exist within cells as antiparallel homodimers, while heterodimers with S100A4 and S100B also has been reported. Upon binding calcium S100A1 changes conformation to expose a hydrophobic cleft which is the interaction site of S100A1 with its more that 20 known target proteins.
Probab=95.91 E-value=0.062 Score=40.89 Aligned_cols=72 Identities=11% Similarity=0.190 Sum_probs=43.7
Q ss_pred HHHHHHHHHcC-CCCcCCCC-CCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcCCCCCeeehHHHH
Q psy4949 6 WNVIEAFRENG-LNAIELQS-DVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSIK 83 (275)
Q Consensus 6 ~~~~e~f~~~~-l~~~~~~~-~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~ 83 (275)
.+++++|.... -+ .+. .|+..++..+|+.-.-......| +.++ ++-+++.+|.+++|.|++.+|+
T Consensus 9 ~~l~~~F~~fDd~d---g~G~~Is~~El~~~l~~~lg~~~~~~~-----s~~~-----v~~i~~~~D~d~~G~I~f~eF~ 75 (92)
T cd05025 9 ETLINVFHAHSGKE---GDKYKLSKKELKDLLQTELSDFLDAQK-----DADA-----VDKIMKELDENGDGEVDFQEFV 75 (92)
T ss_pred HHHHHHHHHHhccc---CCCCeECHHHHHHHHHHHHHHHccCCC-----CHHH-----HHHHHHHHCCCCCCcCcHHHHH
Confidence 45566776653 33 244 49999977776542211111112 2222 4567788999999999999997
Q ss_pred HHHHHhc
Q psy4949 84 VALATMC 90 (275)
Q Consensus 84 ~aLs~Lc 90 (275)
..+..++
T Consensus 76 ~l~~~~~ 82 (92)
T cd05025 76 VLVAALT 82 (92)
T ss_pred HHHHHHH
Confidence 7665543
No 79
>cd05029 S-100A6 S-100A6: S-100A6 domain found in proteins similar to S100A6. S100A6 is a member of the S100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A6 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100A6 is normally expressed in the G1 phase of the cell cycle in neuronal cells. The function of S100A6 remains unclear, but evidence suggests that it is involved in cell cycle regulation and exocytosis. S100A6 may also be involved in tumorigenesis; the protein is overexpressed in several tumors. Ca2+ binding to S100A6 leads to a conformational change in the protein, which exposes a hydrophobic surface for interact
Probab=95.90 E-value=0.056 Score=41.30 Aligned_cols=69 Identities=9% Similarity=0.061 Sum_probs=45.3
Q ss_pred HHHHHHHHHHcCCCCcCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcCCCCCeeehHHHHH
Q psy4949 5 IWNVIEAFRENGLNAIELQSDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSIKV 84 (275)
Q Consensus 5 ~~~~~e~f~~~~l~~~~~~~~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~~ 84 (275)
|.++|++|+..--+.. +...|+.++|..+++..+. + +..++.++. .-+++..|.|++|+|++.+|..
T Consensus 9 ~~~~i~~F~~y~~~~~-~~g~Is~~EL~~~l~~~~~-l------g~k~t~~ev-----~~m~~~~D~d~dG~Idf~EFv~ 75 (88)
T cd05029 9 IGLLVAIFHKYSGREG-DKNTLSKKELKELIQKELT-I------GSKLQDAEI-----AKLMEDLDRNKDQEVNFQEYVT 75 (88)
T ss_pred HHHHHHHHHHHHccCC-CCCEECHHHHHHHHHHHHh-c------CCCCCHHHH-----HHHHHHhcCCCCCCCcHHHHHH
Confidence 5667888876655322 4568999997777765221 1 112333333 4567888999999999999954
Q ss_pred HH
Q psy4949 85 AL 86 (275)
Q Consensus 85 aL 86 (275)
-+
T Consensus 76 lm 77 (88)
T cd05029 76 FL 77 (88)
T ss_pred HH
Confidence 43
No 80
>smart00027 EH Eps15 homology domain. Pair of EF hand motifs that recognise proteins containing Asn-Pro-Phe (NPF) sequences.
Probab=95.88 E-value=0.024 Score=43.57 Aligned_cols=58 Identities=21% Similarity=0.293 Sum_probs=43.7
Q ss_pred hhHHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcC-----CCcccHHHHHHHHhc
Q psy4949 95 MDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG-----NGKVTVNDFMDTMMS 165 (275)
Q Consensus 95 ~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~-----d~~Is~~eFl~~~~~ 165 (275)
.++++-+|..+ .|++|.|+.+++..+++.. . .+++.++.+|.. ++.|+.+||+..+..
T Consensus 9 ~~~l~~~F~~~D~d~~G~Is~~el~~~l~~~-~------------~~~~ev~~i~~~~d~~~~g~I~~~eF~~~~~~ 72 (96)
T smart00027 9 KAKYEQIFRSLDKNQDGTVTGAQAKPILLKS-G------------LPQTLLAKIWNLADIDNDGELDKDEFALAMHL 72 (96)
T ss_pred HHHHHHHHHHhCCCCCCeEeHHHHHHHHHHc-C------------CCHHHHHHHHHHhcCCCCCCcCHHHHHHHHHH
Confidence 45789999999 5899999999999888751 1 134455555543 689999999987743
No 81
>cd05023 S-100A11 S-100A11: S-100A11 domain found in proteins similar to S100A11. S100A11 is a member of the S-100 domain family within EF-hand Ca2+-binding proteins superfamily. Note that the S-100 hierarchy, to which this S-100A11 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins exhibit unique patterns of tissue- and cell type-specific expression and have been implicated in the Ca2+-dependent regulation of diverse physiological processes, including cell cycle regulation, differentiation, growth, and metabolic control . S100 proteins have also been associated with a variety of pathological events, including neoplastic transformation and neurodegenerative diseases such as Alzheimer's, usually via over expression of the protein. S100A11 is expressed in smooth muscle and other tissues and involves in calcium-dependent membrane aggregation, which is important for cell vesiculation . As is the case for many other S100 proteins, S
Probab=95.85 E-value=0.071 Score=40.84 Aligned_cols=70 Identities=11% Similarity=0.097 Sum_probs=51.9
Q ss_pred hHHHHHHHHHHHHHh-hcCCCCC-eeehHHHHHHHHHhc----CCCh-hhHHHHhchhh-ccCCCceeHHHHHHHHHHH
Q psy4949 54 VEVLSGLLLNWLLSA-YSVESLG-RIRVFSIKVALATMC----SGKL-MDKLRYIFSQL-CDCNGHLVAWKFNEYLQDV 124 (275)
Q Consensus 54 ~~~~~~l~~~~lf~~-fD~~~~G-~I~~~ef~~aLs~Lc----~G~l-~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i 124 (275)
.+.++..+. -+|.. +|.+++| +|+..||+..+.--. +... ..-+.-+++.+ .|+||.|+-+||..++..+
T Consensus 4 le~~i~~l~-~~F~~y~~~dg~~~~Ls~~Elk~ll~~e~~~~~~~~~~~~~~~~ll~~~D~d~DG~I~f~EF~~l~~~l 81 (89)
T cd05023 4 TERCIESLI-AVFQKYAGKDGDSYQLSKTEFLSFMNTELASFTKNQKDPGVLDRMMKKLDLNSDGQLDFQEFLNLIGGL 81 (89)
T ss_pred HHHHHHHHH-HHHHHHhccCCCcCeECHHHHHHHHHHhhhHhhcCCCCHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHH
Confidence 455555554 46666 7788876 999999999998764 2222 34567788888 7999999999998887765
No 82
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=95.83 E-value=0.016 Score=33.94 Aligned_cols=21 Identities=10% Similarity=0.166 Sum_probs=16.8
Q ss_pred HHHHhhcCCCCCeeehHHHHH
Q psy4949 64 WLLSAYSVESLGRIRVFSIKV 84 (275)
Q Consensus 64 ~lf~~fD~~~~G~I~~~ef~~ 84 (275)
-+|+.+|.|+||+|++.||..
T Consensus 3 ~~F~~~D~d~DG~is~~E~~~ 23 (25)
T PF13202_consen 3 DAFQQFDTDGDGKISFEEFQR 23 (25)
T ss_dssp HHHHHHTTTSSSEEEHHHHHH
T ss_pred HHHHHHcCCCCCcCCHHHHHH
Confidence 367888888888888888876
No 83
>KOG2562|consensus
Probab=95.56 E-value=0.039 Score=53.98 Aligned_cols=88 Identities=19% Similarity=0.207 Sum_probs=69.5
Q ss_pred CCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhcc-CCCCCCCchHHHhhhh
Q psy4949 71 VESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVL-ESPSFSYTDTLAQEIF 148 (275)
Q Consensus 71 ~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~g-E~~~f~~~e~~v~~cF 148 (275)
...+|+|++.+|+-.+..+-.-+-..-+.|.|+.+ .|++|.++..+|..+-.++++-...++ |...| |....++|
T Consensus 326 ~~~eGrmdykdFv~FilA~e~k~t~~SleYwFrclDld~~G~Lt~~el~~fyeeq~~rm~~~~~e~l~f---ed~l~qi~ 402 (493)
T KOG2562|consen 326 VKVEGRMDYKDFVDFILAEEDKDTPASLEYWFRCLDLDGDGILTLNELRYFYEEQLQRMECMGQEALPF---EDALCQIR 402 (493)
T ss_pred eeecCcccHHHHHHHHHHhccCCCccchhhheeeeeccCCCcccHHHHHHHHHHHHHHHHhcCCCcccH---HHHHHHHH
Confidence 45799999999999888888888888899999999 799999999999999998887654333 33333 55666666
Q ss_pred cC-----CCcccHHHHHH
Q psy4949 149 SG-----NGKVTVNDFMD 161 (275)
Q Consensus 149 ~~-----d~~Is~~eFl~ 161 (275)
.- .++||+.+|+.
T Consensus 403 DMvkP~~~~kItLqDlk~ 420 (493)
T KOG2562|consen 403 DMVKPEDENKITLQDLKG 420 (493)
T ss_pred HHhCccCCCceeHHHHhh
Confidence 53 46888888776
No 84
>PF07649 C1_3: C1-like domain; InterPro: IPR011424 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in IPR002219 from INTERPRO. C1 domains are protein kinase C-like zinc finger structures. Diacylglycerol (DAG) kinases (DGKs) have a two or three commonly conserved cysteine-rich C1 domains []. DGKs modulate the balance between the two signaling lipids, DAG and phosphatidic acid (PA), by phosphorylating DAG to yield PA []. The PKD (protein kinase D) family are novel DAG receptors. They have twin C1 domains, designated C1a and C1b, which bind DAG or phorbol esters. Individual C1 domains differ in ligand-binding activity and selectivity []. ; GO: 0047134 protein-disulfide reductase activity, 0055114 oxidation-reduction process; PDB: 1V5N_A.
Probab=95.38 E-value=0.009 Score=36.48 Aligned_cols=27 Identities=48% Similarity=1.346 Sum_probs=12.9
Q ss_pred ccCcCCCCcccc-ceeeeccCCCCccchhh
Q psy4949 192 ACDACGRANFVG-FRYRCAKCGNFQMCQEC 220 (275)
Q Consensus 192 ~Cd~C~~~pI~G-~RykC~~C~~~dLC~~C 220 (275)
.|+.|+. ++.| .-|.|..| ||+|...|
T Consensus 2 ~C~~C~~-~~~~~~~Y~C~~C-df~lH~~C 29 (30)
T PF07649_consen 2 RCDACGK-PIDGGWFYRCSEC-DFDLHEEC 29 (30)
T ss_dssp --TTTS-----S--EEE-TTT------HHH
T ss_pred cCCcCCC-cCCCCceEECccC-CCccChhc
Confidence 6999997 8887 99999998 89998887
No 85
>KOG2643|consensus
Probab=95.28 E-value=0.038 Score=53.70 Aligned_cols=52 Identities=21% Similarity=0.253 Sum_probs=44.3
Q ss_pred hcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHHHHHHHH
Q psy4949 69 YSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQ 122 (275)
Q Consensus 69 fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~ 122 (275)
||-+.+|-|++.+|+--+.+|+. ++.-.+-+|+++ .|+||.|+++||...-+
T Consensus 208 ~~lg~~GLIsfSdYiFLlTlLS~--p~~~F~IAFKMFD~dgnG~IdkeEF~~v~~ 260 (489)
T KOG2643|consen 208 YKLGESGLISFSDYIFLLTLLSI--PERNFRIAFKMFDLDGNGEIDKEEFETVQQ 260 (489)
T ss_pred EEcCCCCeeeHHHHHHHHHHHcc--CcccceeeeeeeecCCCCcccHHHHHHHHH
Confidence 66778999999999999988874 556688999999 79999999999976544
No 86
>PF13833 EF-hand_8: EF-hand domain pair; PDB: 3KF9_A 1TTX_A 1WLZ_A 1ALV_A 1NX3_A 1ALW_A 1NX2_A 1NX1_A 1NX0_A 1DF0_A ....
Probab=95.21 E-value=0.026 Score=38.34 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=23.7
Q ss_pred HHHHHHhhcCCCCCeeehHHHHHHHH
Q psy4949 62 LNWLLSAYSVESLGRIRVFSIKVALA 87 (275)
Q Consensus 62 ~~~lf~~fD~~~~G~I~~~ef~~aLs 87 (275)
++.||+.||.+++|.|++.||+..+.
T Consensus 27 ~~~l~~~~D~~~~G~I~~~EF~~~~~ 52 (54)
T PF13833_consen 27 VDRLFREFDTDGDGYISFDEFISMMQ 52 (54)
T ss_dssp HHHHHHHHTTSSSSSEEHHHHHHHHH
T ss_pred HHHHHHhcccCCCCCCCHHHHHHHHH
Confidence 47899999999999999999998875
No 87
>KOG0031|consensus
Probab=95.11 E-value=1 Score=38.25 Aligned_cols=113 Identities=13% Similarity=0.186 Sum_probs=82.4
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcCCCCCeeehHHHHHHHHH-hcCCChhhHHHH
Q psy4949 22 LQSDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSIKVALAT-MCSGKLMDKLRY 100 (275)
Q Consensus 22 ~~~~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~~aLs~-Lc~G~l~dKlr~ 100 (275)
.+.-|+..+ |+++|-.+.|. ++ ++..+-+. ....|.|.|-.|...+.- |++-.+++=..-
T Consensus 45 rDG~IdkeD----L~d~~aSlGk~-~~------d~elDaM~--------~Ea~gPINft~FLTmfGekL~gtdpe~~I~~ 105 (171)
T KOG0031|consen 45 RDGFIDKED----LRDMLASLGKI-AS------DEELDAMM--------KEAPGPINFTVFLTMFGEKLNGTDPEEVILN 105 (171)
T ss_pred CCCcccHHH----HHHHHHHcCCC-CC------HHHHHHHH--------HhCCCCeeHHHHHHHHHHHhcCCCHHHHHHH
Confidence 477899999 77777776654 22 33322222 357999999999998865 556689999999
Q ss_pred hchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcC-----CCcccHHHHHHHHh
Q psy4949 101 IFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG-----NGKVTVNDFMDTMM 164 (275)
Q Consensus 101 ~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~-----d~~Is~~eFl~~~~ 164 (275)
+|+.+ .++.|.|..+.|..+|... |+ ..+++.|+..|.. .|.+....|...+.
T Consensus 106 AF~~FD~~~~G~I~~d~lre~Ltt~-------gD----r~~~eEV~~m~r~~p~d~~G~~dy~~~~~~it 164 (171)
T KOG0031|consen 106 AFKTFDDEGSGKIDEDYLRELLTTM-------GD----RFTDEEVDEMYREAPIDKKGNFDYKAFTYIIT 164 (171)
T ss_pred HHHhcCccCCCccCHHHHHHHHHHh-------cc----cCCHHHHHHHHHhCCcccCCceeHHHHHHHHH
Confidence 99999 4667999999999888752 32 1246677777765 47888888888665
No 88
>KOG0028|consensus
Probab=94.87 E-value=0.21 Score=42.54 Aligned_cols=93 Identities=18% Similarity=0.231 Sum_probs=60.6
Q ss_pred HHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhh----ccCCCceeHHHHHHHHHHHHhchhhccCCCCCC
Q psy4949 63 NWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL----CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFS 138 (275)
Q Consensus 63 ~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly----~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~ 138 (275)
.=-|..||++++|+|++.|+++|+-.+-=..-. .-+-+++ .++.|.|+-.+|...++.. ++|..
T Consensus 36 ~e~f~lfd~~~~g~iD~~EL~vAmralGFE~~k---~ei~kll~d~dk~~~g~i~fe~f~~~mt~k------~~e~d--- 103 (172)
T KOG0028|consen 36 KEAFELFDPDMAGKIDVEELKVAMRALGFEPKK---EEILKLLADVDKEGSGKITFEDFRRVMTVK------LGERD--- 103 (172)
T ss_pred HHHHHhhccCCCCcccHHHHHHHHHHcCCCcch---HHHHHHHHhhhhccCceechHHHHHHHHHH------HhccC---
Confidence 356788999999999999999987655422112 2223344 3567999999987766643 34432
Q ss_pred CchHHHhhhhc---C--CCcccHHHHHHHHhcCCCC
Q psy4949 139 YTDTLAQEIFS---G--NGKVTVNDFMDTMMSEPGP 169 (275)
Q Consensus 139 ~~e~~v~~cF~---~--d~~Is~~eFl~~~~~d~~P 169 (275)
+...+..-|. . +|+||..+|..-+. +..|
T Consensus 104 -t~eEi~~afrl~D~D~~Gkis~~~lkrvak-eLge 137 (172)
T KOG0028|consen 104 -TKEEIKKAFRLFDDDKTGKISQRNLKRVAK-ELGE 137 (172)
T ss_pred -cHHHHHHHHHcccccCCCCcCHHHHHHHHH-HhCc
Confidence 3334444455 2 58999999888554 4455
No 89
>KOG4223|consensus
Probab=94.79 E-value=0.17 Score=47.41 Aligned_cols=92 Identities=20% Similarity=0.280 Sum_probs=63.7
Q ss_pred HHHhhcCCCCCeeehHHHHHHHHHhc----------CCChhhHH----HHhchhh-ccCCCceeHHHHHHHHHHHHhchh
Q psy4949 65 LLSAYSVESLGRIRVFSIKVALATMC----------SGKLMDKL----RYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPA 129 (275)
Q Consensus 65 lf~~fD~~~~G~I~~~ef~~aLs~Lc----------~G~l~dKl----r~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~ 129 (275)
-+..||.|.+|.|++.++.....-.- .+.-..|+ +.-|+.- .|+||.+|++||..+|+ |.
T Consensus 118 ~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~~d~e~~~~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLH-----PE 192 (325)
T KOG4223|consen 118 RWDEYDKNKDGFITWEEYLPQTYGRVDLPDEFPDEEDNEEYKKMIARDEERFKAADQDGDGSLTLEEFTAFLH-----PE 192 (325)
T ss_pred HHHHhccCccceeeHHHhhhhhhhcccCccccccchhcHHHHHHHHHHHHHHhhcccCCCCcccHHHHHhccC-----hh
Confidence 46789999999999999999887421 11112222 4578877 69999999999999987 32
Q ss_pred hccCCCCCCCc-----hHHHhhhhc-CCCcccHHHHHHHHhcCC
Q psy4949 130 AVLESPSFSYT-----DTLAQEIFS-GNGKVTVNDFMDTMMSEP 167 (275)
Q Consensus 130 ~~gE~~~f~~~-----e~~v~~cF~-~d~~Is~~eFl~~~~~d~ 167 (275)
| ++.. .+.++.+=. +||.|+++||+--+.+..
T Consensus 193 ---e---~p~M~~iVi~Etl~d~Dkn~DG~I~~eEfigd~~~~~ 230 (325)
T KOG4223|consen 193 ---E---HPHMKDIVIAETLEDIDKNGDGKISLEEFIGDLYSHE 230 (325)
T ss_pred ---h---cchHHHHHHHHHHhhcccCCCCceeHHHHHhHHhhcc
Confidence 1 2221 233333322 379999999999887654
No 90
>PF13202 EF-hand_5: EF hand; PDB: 3DD4_A 2Q4U_A 2BE4_A 1UHJ_B 1UHI_A 1UHH_B 1EJ3_B 1UHK_A 2ZFD_A 1UHN_A ....
Probab=94.74 E-value=0.037 Score=32.37 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=20.2
Q ss_pred HHHhchhh-ccCCCceeHHHHHHHH
Q psy4949 98 LRYIFSQL-CDCNGHLVAWKFNEYL 121 (275)
Q Consensus 98 lr~~F~ly-~D~nG~i~~~el~~~L 121 (275)
++.+|+.+ .|+||.|+..||..++
T Consensus 1 l~~~F~~~D~d~DG~is~~E~~~~~ 25 (25)
T PF13202_consen 1 LKDAFQQFDTDGDGKISFEEFQRLV 25 (25)
T ss_dssp HHHHHHHHTTTSSSEEEHHHHHHHH
T ss_pred CHHHHHHHcCCCCCcCCHHHHHHHC
Confidence 45689999 7999999999998754
No 91
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=94.62 E-value=0.071 Score=39.70 Aligned_cols=61 Identities=23% Similarity=0.415 Sum_probs=44.5
Q ss_pred HHHhchhhccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcC---------CCcccHHHHHHHHhcCC
Q psy4949 98 LRYIFSQLCDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG---------NGKVTVNDFMDTMMSEP 167 (275)
Q Consensus 98 lr~~F~ly~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~---------d~~Is~~eFl~~~~~d~ 167 (275)
++.+|+-|+++.+.||.++|..+|++...-+.. +...+..++.+ .+.+|++.|..+++++.
T Consensus 2 i~~if~~ys~~~~~mt~~~f~~FL~~eQ~~~~~---------~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S~~ 71 (83)
T PF09279_consen 2 IEEIFRKYSSDKEYMTAEEFRRFLREEQGEPRL---------TDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFSDE 71 (83)
T ss_dssp HHHHHHHHCTTSSSEEHHHHHHHHHHTSS-TTS---------SHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHSTT
T ss_pred HHHHHHHHhCCCCcCCHHHHHHHHHHHhccccC---------cHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCCCc
Confidence 457899998788999999999999975433321 34444444433 58999999999999853
No 92
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=94.49 E-value=0.064 Score=29.96 Aligned_cols=26 Identities=15% Similarity=0.164 Sum_probs=20.9
Q ss_pred HHHHHhhcCCCCCeeehHHHHHHHHH
Q psy4949 63 NWLLSAYSVESLGRIRVFSIKVALAT 88 (275)
Q Consensus 63 ~~lf~~fD~~~~G~I~~~ef~~aLs~ 88 (275)
..+|..+|.+++|.|++.+|..++..
T Consensus 3 ~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 3 KEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 45788889988899999888887753
No 93
>KOG0377|consensus
Probab=94.24 E-value=0.11 Score=50.80 Aligned_cols=63 Identities=16% Similarity=0.357 Sum_probs=39.7
Q ss_pred HHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhhccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHH
Q psy4949 64 WLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQLCDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTL 143 (275)
Q Consensus 64 ~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~ 143 (275)
-+||+.|.|.+|.|++.||..|.-+++ +--||.|+..++.++-
T Consensus 551 tiF~~iD~D~SG~isldEF~~a~~l~~---------------sh~~~~i~~~~i~~la---------------------- 593 (631)
T KOG0377|consen 551 TIFNIIDADNSGEISLDEFRTAWKLLS---------------SHMNGAISDDEILELA---------------------- 593 (631)
T ss_pred HHHHHhccCCCCceeHHHHHHHHHHHH---------------hhcCCCcCHHHHHHHH----------------------
Confidence 466667777777777766666554322 1225556666543222
Q ss_pred Hhhh-hcCCCcccHHHHHHHHh
Q psy4949 144 AQEI-FSGNGKVTVNDFMDTMM 164 (275)
Q Consensus 144 v~~c-F~~d~~Is~~eFl~~~~ 164 (275)
+++ |.+||.|.++||++.+.
T Consensus 594 -~~mD~NkDG~IDlNEfLeAFr 614 (631)
T KOG0377|consen 594 -RSMDLNKDGKIDLNEFLEAFR 614 (631)
T ss_pred -HhhccCCCCcccHHHHHHHHh
Confidence 222 78899999999999885
No 94
>KOG0041|consensus
Probab=94.12 E-value=0.15 Score=45.02 Aligned_cols=63 Identities=14% Similarity=0.238 Sum_probs=47.6
Q ss_pred HHHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHHHHHHHHHH
Q psy4949 62 LNWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDV 124 (275)
Q Consensus 62 ~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i 124 (275)
+.-+|+.||.++||.||+.|+|-.+--|-...-.=-++-+-+-. -|.+|.||..++..|.+-+
T Consensus 101 ~~~~Fk~yDe~rDgfIdl~ELK~mmEKLgapQTHL~lK~mikeVded~dgklSfreflLIfrka 164 (244)
T KOG0041|consen 101 AESMFKQYDEDRDGFIDLMELKRMMEKLGAPQTHLGLKNMIKEVDEDFDGKLSFREFLLIFRKA 164 (244)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHhCCchhhHHHHHHHHHhhcccccchhHHHHHHHHHHH
Confidence 34589999999999999999999877664443333334454444 3889999999999888765
No 95
>KOG0751|consensus
Probab=93.95 E-value=0.58 Score=46.49 Aligned_cols=59 Identities=14% Similarity=0.114 Sum_probs=51.5
Q ss_pred HHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHHHHHHHHH
Q psy4949 63 NWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQD 123 (275)
Q Consensus 63 ~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~ 123 (275)
.++-++=|..+||-|++.||.+-=++||.- +-++.-+|+++ ..++|.+|-+++..+...
T Consensus 77 ~Lla~iaD~tKDglisf~eF~afe~~lC~p--Dal~~~aFqlFDr~~~~~vs~~~~~~if~~ 136 (694)
T KOG0751|consen 77 RLLASIADQTKDGLISFQEFRAFESVLCAP--DALFEVAFQLFDRLGNGEVSFEDVADIFGQ 136 (694)
T ss_pred HHHHhhhhhcccccccHHHHHHHHhhccCc--hHHHHHHHHHhcccCCCceehHHHHHHHhc
Confidence 346678899999999999999999999975 77899999999 477999999999887764
No 96
>cd05024 S-100A10 S-100A10: A subgroup of the S-100A10 domain found in proteins similar to S100A10. S100A10 is a member of the S100 family of EF-hand superfamily of calcium-binding proteins. Note that the S-100 hierarchy, to which this S-100A10 group belongs, contains only S-100 EF-hand domains, other EF-hands have been modeled separately. S100 proteins are expressed exclusively in vertebrates, and are implicated in intracellular and extracellular regulatory activities. A unique feature of S100A10 is that it contains mutation in both of the calcium binding sites, making it calcium insensitive. S100A10 has been detected in brain, heart, gastrointestinal tract, kidney, liver, lung, spleen, testes, epidermis, aorta, and thymus. Structural data supports the homo- and hetero-dimeric as well as hetero-tetrameric nature of the protein. S100A10 has multiple binding partners in its calcium free state and is therefore involved in many diverse biological functions.
Probab=93.72 E-value=0.14 Score=39.58 Aligned_cols=59 Identities=12% Similarity=0.227 Sum_probs=45.2
Q ss_pred HHhchhhccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcC-----CCcccHHHHHHHH
Q psy4949 99 RYIFSQLCDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG-----NGKVTVNDFMDTM 163 (275)
Q Consensus 99 r~~F~ly~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~-----d~~Is~~eFl~~~ 163 (275)
--+|.-|+..+|.++|.||..+|+. .+|..+.. ...+..++.+|.. |++|+..||+.-+
T Consensus 11 I~~FhkYaG~~~tLsk~Elk~Ll~~--Elp~~l~~----~~d~~~vd~im~~LD~n~Dg~vdF~EF~~Lv 74 (91)
T cd05024 11 MLTFHKFAGEKNYLNRDDLQKLMEK--EFSEFLKN----QNDPMAVDKIMKDLDDCRDGKVGFQSFFSLI 74 (91)
T ss_pred HHHHHHHcCCCCcCCHHHHHHHHHH--HhHHHHcC----CCCHHHHHHHHHHhCCCCCCcCcHHHHHHHH
Confidence 3478889866789999999999974 56655553 1246788888875 7999999998854
No 97
>KOG0030|consensus
Probab=92.99 E-value=0.68 Score=38.69 Aligned_cols=102 Identities=23% Similarity=0.247 Sum_probs=65.4
Q ss_pred hHHHHHHHHHHcCCCCcCC----------CCCCCHHHHH-HHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcCC
Q psy4949 4 DIWNVIEAFRENGLNAIEL----------QSDVSVARFE-TLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVE 72 (275)
Q Consensus 4 d~~~~~e~f~~~~l~~~~~----------~~~l~~~~l~-~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~~ 72 (275)
+..-+=+.+|..|+|+-+. ...++++++. ...--||+++.|.- .+...+.++ --+++||++
T Consensus 29 ~~~q~gdvlRalG~nPT~aeV~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk---~q~t~edfv-----egLrvFDke 100 (152)
T KOG0030|consen 29 SGSQVGDVLRALGQNPTNAEVLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNK---DQGTYEDFV-----EGLRVFDKE 100 (152)
T ss_pred cHHHHHHHHHHhcCCCcHHHHHHHHcCcccchhhhhhhhHHHHHHHHHHHHhcc---ccCcHHHHH-----HHHHhhccc
Confidence 4455566778888876531 1233444431 12335777776651 244555443 246999999
Q ss_pred CCCeeehHHHHHHHHHhcCCChhhHH--HHhchhhc---cCCCceeHHHHH
Q psy4949 73 SLGRIRVFSIKVALATMCSGKLMDKL--RYIFSQLC---DCNGHLVAWKFN 118 (275)
Q Consensus 73 ~~G~I~~~ef~~aLs~Lc~G~l~dKl--r~~F~ly~---D~nG~i~~~el~ 118 (275)
++|.|.--++.-.|..| .+|+ .-+-.|++ |+||+|.-+.|-
T Consensus 101 g~G~i~~aeLRhvLttl-----Gekl~eeEVe~Llag~eD~nG~i~YE~fV 146 (152)
T KOG0030|consen 101 GNGTIMGAELRHVLTTL-----GEKLTEEEVEELLAGQEDSNGCINYEAFV 146 (152)
T ss_pred CCcceeHHHHHHHHHHH-----HhhccHHHHHHHHccccccCCcCcHHHHH
Confidence 99999999999999854 4555 23555653 999999988763
No 98
>KOG0031|consensus
Probab=92.62 E-value=0.49 Score=40.22 Aligned_cols=89 Identities=12% Similarity=0.102 Sum_probs=63.4
Q ss_pred HHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhhccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHH
Q psy4949 64 WLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQLCDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTL 143 (275)
Q Consensus 64 ~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~ 143 (275)
-.|+..|.|+||.|+=..++..|+.|-+--.++-+..+++ -.+|.|.---|. + +.||...-..+|+.
T Consensus 36 EAF~~mDqnrDG~IdkeDL~d~~aSlGk~~~d~elDaM~~---Ea~gPINft~FL---T-------mfGekL~gtdpe~~ 102 (171)
T KOG0031|consen 36 EAFNLMDQNRDGFIDKEDLRDMLASLGKIASDEELDAMMK---EAPGPINFTVFL---T-------MFGEKLNGTDPEEV 102 (171)
T ss_pred HHHHHHhccCCCcccHHHHHHHHHHcCCCCCHHHHHHHHH---hCCCCeeHHHHH---H-------HHHHHhcCCCHHHH
Confidence 4689999999999999999999998877755665565555 457777755443 2 34554433445665
Q ss_pred Hh---hhhcC--CCcccHHHHHHHHhc
Q psy4949 144 AQ---EIFSG--NGKVTVNDFMDTMMS 165 (275)
Q Consensus 144 v~---~cF~~--d~~Is~~eFl~~~~~ 165 (275)
+. +||.. .|.|..+.+.+|++.
T Consensus 103 I~~AF~~FD~~~~G~I~~d~lre~Ltt 129 (171)
T KOG0031|consen 103 ILNAFKTFDDEGSGKIDEDYLRELLTT 129 (171)
T ss_pred HHHHHHhcCccCCCccCHHHHHHHHHH
Confidence 54 45665 489999999999986
No 99
>PF03107 C1_2: C1 domain; InterPro: IPR004146 This short domain is rich in cysteines and histidines. The pattern of conservation is similar to that found in DAG_PE-bind (IPR002219 from INTERPRO), therefore we have termed this domain DC1 for divergent C1 domain. This domain probably also binds to two zinc ions. The function of proteins with this domain is uncertain, however this domain may bind to molecules such as diacylglycerol. This family are found in plant proteins.
Probab=92.58 E-value=0.086 Score=32.18 Aligned_cols=27 Identities=41% Similarity=1.083 Sum_probs=23.3
Q ss_pred ccCcCCCCccccc-eeeeccCCCCccchhh
Q psy4949 192 ACDACGRANFVGF-RYRCAKCGNFQMCQEC 220 (275)
Q Consensus 192 ~Cd~C~~~pI~G~-RykC~~C~~~dLC~~C 220 (275)
.|++|.. .+.|. .|+|..|. |++-..|
T Consensus 2 ~C~~C~~-~~~~~~~Y~C~~c~-f~lh~~C 29 (30)
T PF03107_consen 2 WCDVCRR-KIDGFYFYHCSECC-FTLHVRC 29 (30)
T ss_pred CCCCCCC-CcCCCEeEEeCCCC-CeEcCcc
Confidence 6999987 89999 99999987 8877666
No 100
>KOG0038|consensus
Probab=92.08 E-value=0.69 Score=39.08 Aligned_cols=62 Identities=16% Similarity=0.217 Sum_probs=48.6
Q ss_pred HHHHHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHH-HH-hchhh----ccCCCceeHHHHHHHH
Q psy4949 60 LLLNWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKL-RY-IFSQL----CDCNGHLVAWKFNEYL 121 (275)
Q Consensus 60 l~~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKl-r~-~F~ly----~D~nG~i~~~el~~~L 121 (275)
+=+++.|++||-|+++.|---.+...|..|.++.|.+-- .. .=+.+ .||+|.++-.+++.++
T Consensus 108 lK~~YAFkIYDfd~D~~i~~~DL~~~l~~lTr~eLs~eEv~~i~ekvieEAD~DgDgkl~~~eFe~~i 175 (189)
T KOG0038|consen 108 LKAKYAFKIYDFDGDEFIGHDDLEKTLTSLTRDELSDEEVELICEKVIEEADLDGDGKLSFAEFEHVI 175 (189)
T ss_pred hhhhheeEEeecCCCCcccHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHhcCCCCCcccHHHHHHHH
Confidence 346788999999999999999999999999999776543 22 22233 3889999999987654
No 101
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=91.98 E-value=0.23 Score=39.80 Aligned_cols=57 Identities=11% Similarity=0.125 Sum_probs=39.8
Q ss_pred HHHHHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHHHH
Q psy4949 60 LLLNWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFN 118 (275)
Q Consensus 60 l~~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~ 118 (275)
-.+.|.|.-.|.|+||.++-.|++.....| -+++.=.+..|+-. .|+||.||..|..
T Consensus 54 ~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~~e~C~~~F~~~CD~n~d~~Is~~EW~ 111 (113)
T PF10591_consen 54 RVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MPPEHCARPFFRSCDVNKDGKISLDEWC 111 (113)
T ss_dssp HHHHHHHHHH--T-SSEE-TTTTGGGGSTT--STTGGGHHHHHHHH-TT-SSSEEHHHHH
T ss_pred hhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hhhHHHHHHHHHHcCCCCCCCCCHHHHc
Confidence 357899999999999999999998877766 34444456666655 5889999999863
No 102
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=91.20 E-value=0.6 Score=36.91 Aligned_cols=59 Identities=20% Similarity=0.154 Sum_probs=43.3
Q ss_pred HHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHHHHHHHHHHH
Q psy4949 64 WLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVL 125 (275)
Q Consensus 64 ~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~ 125 (275)
-+|+..|+ ++|.|+-...+-.| .-.|=..+-|.-++.+- .|++|.+++.||.-.++-|.
T Consensus 14 ~~F~~l~~-~~g~isg~~a~~~f--~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li~ 73 (104)
T PF12763_consen 14 QIFQSLDP-QDGKISGDQAREFF--MKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLIN 73 (104)
T ss_dssp HHHHCTSS-STTEEEHHHHHHHH--HHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHHH
T ss_pred HHHHhcCC-CCCeEeHHHHHHHH--HHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHHH
Confidence 46677775 57888888877533 34566668889999888 58889999999877666443
No 103
>PRK12309 transaldolase/EF-hand domain-containing protein; Provisional
Probab=91.05 E-value=0.53 Score=45.70 Aligned_cols=41 Identities=15% Similarity=0.177 Sum_probs=34.2
Q ss_pred CCccChHHHHHHHHHHHHHhhcCCCCCeeehHHHHHHHHHhcC
Q psy4949 49 SQQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSIKVALATMCS 91 (275)
Q Consensus 49 ~~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~ 91 (275)
.|.|+.++... .+.+|..+|.|+||+|++.||+.++....+
T Consensus 348 dG~Is~~E~~~--~~~~F~~~D~d~DG~Is~eEf~~~~~~~~~ 388 (391)
T PRK12309 348 DGFITREEWLG--SDAVFDALDLNHDGKITPEEMRAGLGAALR 388 (391)
T ss_pred CCcCcHHHHHH--HHHHHHHhCCCCCCCCcHHHHHHHHHHHHH
Confidence 36788877643 578999999999999999999999987643
No 104
>KOG2643|consensus
Probab=90.96 E-value=0.52 Score=46.07 Aligned_cols=58 Identities=16% Similarity=0.279 Sum_probs=42.7
Q ss_pred HHHhhcCCCCCeeehHHHHHHHHHhc-CCChhhH-------------------HHHhchhhccCCCceeHHHHHHHHHHH
Q psy4949 65 LLSAYSVESLGRIRVFSIKVALATMC-SGKLMDK-------------------LRYIFSQLCDCNGHLVAWKFNEYLQDV 124 (275)
Q Consensus 65 lf~~fD~~~~G~I~~~ef~~aLs~Lc-~G~l~dK-------------------lr~~F~ly~D~nG~i~~~el~~~L~~i 124 (275)
.|..||.|+||-|+-.||.....++. .+++... .-|.|. .|+||.++-+||..+.+.+
T Consensus 238 AFKMFD~dgnG~IdkeEF~~v~~li~sQ~~~g~~hrd~~tt~~s~~~~~nsaL~~yFFG--~rg~~kLs~deF~~F~e~L 315 (489)
T KOG2643|consen 238 AFKMFDLDGNGEIDKEEFETVQQLIRSQTSVGVRHRDHFTTGNSFKVEVNSALLTYFFG--KRGNGKLSIDEFLKFQENL 315 (489)
T ss_pred eeeeeecCCCCcccHHHHHHHHHHHHhccccceecccCccccceehhhhhhhHHHHhhc--cCCCccccHHHHHHHHHHH
Confidence 58899999999999999998886554 3333331 123333 4899999999998888754
No 105
>KOG0030|consensus
Probab=90.26 E-value=5.1 Score=33.59 Aligned_cols=116 Identities=16% Similarity=0.232 Sum_probs=74.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcCC--CCCeeehHHHHHHHHHhcCC----Chhh
Q psy4949 23 QSDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVE--SLGRIRVFSIKVALATMCSG----KLMD 96 (275)
Q Consensus 23 ~~~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~~--~~G~I~~~ef~~aLs~Lc~G----~l~d 96 (275)
+.-|+..++-.+|+.+=. -|+ +.- +.-.+.-++++ ..-+|+|..|+-.+..+..- +.+|
T Consensus 25 D~ki~~~q~gdvlRalG~-----nPT------~ae----V~k~l~~~~~~~~~~~rl~FE~fLpm~q~vaknk~q~t~ed 89 (152)
T KOG0030|consen 25 DGKISGSQVGDVLRALGQ-----NPT------NAE----VLKVLGQPKRREMNVKRLDFEEFLPMYQQVAKNKDQGTYED 89 (152)
T ss_pred cccccHHHHHHHHHHhcC-----CCc------HHH----HHHHHcCcccchhhhhhhhHHHHHHHHHHHHhccccCcHHH
Confidence 455777776555554421 143 111 12344556655 44799999999999999864 3333
Q ss_pred HHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcC----CCcccHHHHHHHHhc
Q psy4949 97 KLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG----NGKVTVNDFMDTMMS 165 (275)
Q Consensus 97 Klr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~----d~~Is~~eFl~~~~~ 165 (275)
=++ -.+.+ .++||.|.-.||+.+|.. +||-. +++.|+..-.+ +|.|..++|+..+++
T Consensus 90 fve-gLrvFDkeg~G~i~~aeLRhvLtt-------lGekl----~eeEVe~Llag~eD~nG~i~YE~fVk~i~~ 151 (152)
T KOG0030|consen 90 FVE-GLRVFDKEGNGTIMGAELRHVLTT-------LGEKL----TEEEVEELLAGQEDSNGCINYEAFVKHIMS 151 (152)
T ss_pred HHH-HHHhhcccCCcceeHHHHHHHHHH-------HHhhc----cHHHHHHHHccccccCCcCcHHHHHHHHhc
Confidence 222 23334 588999999999988874 46643 35666666665 589999999988764
No 106
>smart00054 EFh EF-hand, calcium binding motif. EF-hands are calcium-binding motifs that occur at least in pairs. Links between disease states and genes encoding EF-hands, particularly the S100 subclass, are emerging. Each motif consists of a 12 residue loop flanked on either side by a 12 residue alpha-helix. EF-hands undergo a conformational change unpon binding calcium ions.
Probab=89.37 E-value=0.41 Score=26.43 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=21.8
Q ss_pred HHHhchhh-ccCCCceeHHHHHHHHHH
Q psy4949 98 LRYIFSQL-CDCNGHLVAWKFNEYLQD 123 (275)
Q Consensus 98 lr~~F~ly-~D~nG~i~~~el~~~L~~ 123 (275)
++.+|+.+ .|++|.|+..++..+++.
T Consensus 2 ~~~~f~~~d~~~~g~i~~~e~~~~~~~ 28 (29)
T smart00054 2 LKEAFRLFDKDGDGKIDFEEFKDLLKA 28 (29)
T ss_pred HHHHHHHHCCCCCCcEeHHHHHHHHHh
Confidence 56789998 688899999999888764
No 107
>KOG2562|consensus
Probab=87.36 E-value=5.6 Score=39.31 Aligned_cols=138 Identities=23% Similarity=0.365 Sum_probs=85.8
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHHH----HHHHhhcCCCCCeeehHHHHH-----HHHHhcCC-
Q psy4949 23 QSDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLN----WLLSAYSVESLGRIRVFSIKV-----ALATMCSG- 92 (275)
Q Consensus 23 ~~~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~----~lf~~fD~~~~G~I~~~ef~~-----aLs~Lc~G- 92 (275)
...+...+.+..|+++-. .+|-+.....+++.++|+. -+|-.-|+.++|+|.+.+++. +|.-++-.
T Consensus 188 ~~yl~q~df~~~Lqeli~----Thpl~~l~~~pEf~~~Y~~tvi~rIFy~~nrs~tG~iti~el~~snll~~l~~l~eEe 263 (493)
T KOG2562|consen 188 CSYLRQDDFKPYLQELIA----THPLEFLDEEPEFQERYAETVIQRIFYYLNRSRTGRITIQELLRSNLLDALLELDEEE 263 (493)
T ss_pred ccceeccccHHHHHHHHh----cCCchhhccChhHHHHHHHHHhhhhheeeCCccCCceeHHHHHHhHHHHHHHHHHHHh
Confidence 445666666666666553 3442233456666666554 467788999999999988755 45555544
Q ss_pred ChhhHHHH--------h---chhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcC---------C
Q psy4949 93 KLMDKLRY--------I---FSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG---------N 151 (275)
Q Consensus 93 ~l~dKlr~--------~---F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~---------d 151 (275)
.+.++.+| + |--+ .|+||.|++++|..+=.. ..++..|+++|+. +
T Consensus 264 d~nq~~~~FS~e~f~viy~kFweLD~Dhd~lidk~~L~ry~d~--------------tlt~~ivdRIFs~v~r~~~~~~e 329 (493)
T KOG2562|consen 264 DINQVTRYFSYEHFYVIYCKFWELDTDHDGLIDKEDLKRYGDH--------------TLTERIVDRIFSQVPRGFTVKVE 329 (493)
T ss_pred hhhhhhhheeHHHHHHHHHHHhhhccccccccCHHHHHHHhcc--------------chhhHHHHHHHhhccccceeeec
Confidence 34444454 1 1111 388999999998532221 1136789999992 6
Q ss_pred CcccHHHHHHHHhcCC---CCccc-chhhhh
Q psy4949 152 GKVTVNDFMDTMMSEP---GPACL-IWLPLL 178 (275)
Q Consensus 152 ~~Is~~eFl~~~~~d~---~Pq~l-vWL~~~ 178 (275)
|.++.++|+..+.+.. +|+++ =|.-++
T Consensus 330 GrmdykdFv~FilA~e~k~t~~SleYwFrcl 360 (493)
T KOG2562|consen 330 GRMDYKDFVDFILAEEDKDTPASLEYWFRCL 360 (493)
T ss_pred CcccHHHHHHHHHHhccCCCccchhhheeee
Confidence 8999999888776532 45554 354443
No 108
>PF12763 EF-hand_4: Cytoskeletal-regulatory complex EF hand; PDB: 2QPT_A 2KSP_A 2KFG_A 2JQ6_A 2KFH_A 2KFF_A 1IQ3_A 3FIA_A 2KHN_A 2KGR_A ....
Probab=84.43 E-value=4.1 Score=32.12 Aligned_cols=51 Identities=8% Similarity=0.266 Sum_probs=38.5
Q ss_pred HHHHHHHhhcCCCCCccChHHHHHHHH---------HHHHHhhcCCCCCeeehHHHHHHHHHh
Q psy4949 36 SSLYHNLNKRLPVSQQVHVEVLSGLLL---------NWLLSAYSVESLGRIRVFSIKVALATM 89 (275)
Q Consensus 36 ~~lY~~~~k~~P~~~~v~~~~~~~l~~---------~~lf~~fD~~~~G~I~~~ef~~aLs~L 89 (275)
..+|..+ .|.++.++.+.+..++. .-+++.=|.+++|++++.||.+|+-++
T Consensus 13 ~~~F~~l---~~~~g~isg~~a~~~f~~S~L~~~~L~~IW~LaD~~~dG~L~~~EF~iAm~Li 72 (104)
T PF12763_consen 13 DQIFQSL---DPQDGKISGDQAREFFMKSGLPRDVLAQIWNLADIDNDGKLDFEEFAIAMHLI 72 (104)
T ss_dssp HHHHHCT---SSSTTEEEHHHHHHHHHHTTSSHHHHHHHHHHH-SSSSSEEEHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCCeEeHHHHHHHHHHcCCCHHHHHHHHhhhcCCCCCcCCHHHHHHHHHHH
Confidence 3445443 35567888888877754 358999999999999999999999865
No 109
>PF10591 SPARC_Ca_bdg: Secreted protein acidic and rich in cysteine Ca binding region; InterPro: IPR019577 This entry represents the calcium-binding domain found in SPARC (Secreted Protein Acidic and Rich in Cysteine) and Testican (also known as SPOCK; or SParc/Osteonectin, Cwcv and Kazal-like domains) proteins. SPARC proteins are down-regulated in various tumours and may have a tumour-suppressor function [, ]. Testican-3 appears to be a novel regulator that reduces the activity of matrix metalloproteinase (MMP) in adult T-cell leukemia (ATL) []. This cysteine-rich domain is responsible for the anti-spreading activity of human urothelial cells. This extracellular calcium-binding domain is rich in alpha-helices and contains two EF-hands that each coordinates one Ca2+ ion, forming a helix-loop-helix structure that not only drives the conformation of the protein but is also necessary for biological activity. The anti-spreading activity was dependent on the coordination of Ca2+ by a Glu residue at the Z position of EF-hand 2 []. ; GO: 0005509 calcium ion binding, 0007165 signal transduction, 0005578 proteinaceous extracellular matrix; PDB: 1BMO_A 1SRA_A 2V53_A 1NUB_B.
Probab=83.32 E-value=0.23 Score=39.71 Aligned_cols=60 Identities=13% Similarity=0.267 Sum_probs=34.6
Q ss_pred ChhhHHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhc-CCCcccHHHHHH
Q psy4949 93 KLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFS-GNGKVTVNDFMD 161 (275)
Q Consensus 93 ~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~-~d~~Is~~eFl~ 161 (275)
.-..=+.|.|..+ .|+||.+++.|+..|.+.+ +| .-....+..+.|=. +|+.||+.|+..
T Consensus 51 ~~~~~~~W~F~~LD~n~d~~L~~~El~~l~~~l--~~-------~e~C~~~F~~~CD~n~d~~Is~~EW~~ 112 (113)
T PF10591_consen 51 ECKRVVHWKFCQLDRNKDGVLDRSELKPLRRPL--MP-------PEHCARPFFRSCDVNKDGKISLDEWCN 112 (113)
T ss_dssp GGHHHHHHHHHHH--T-SSEE-TTTTGGGGSTT--ST-------TGGGHHHHHHHH-TT-SSSEEHHHHHH
T ss_pred hhhhhhhhhHhhhcCCCCCccCHHHHHHHHHHH--hh-------hHHHHHHHHHHcCCCCCCCCCHHHHcc
Confidence 3444459999999 6999999999986544321 11 00111334445522 379999999764
No 110
>KOG4223|consensus
Probab=81.58 E-value=3.8 Score=38.62 Aligned_cols=113 Identities=12% Similarity=0.127 Sum_probs=71.8
Q ss_pred HHHHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCC
Q psy4949 61 LLNWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSY 139 (275)
Q Consensus 61 ~~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~ 139 (275)
=+..++-..|.+++|.|+..|++.=+.-...-.+.+.-.--|..| .|.+|.|+.+++..-.-.....|... .....+.
T Consensus 78 rl~~l~~~iD~~~Dgfv~~~El~~wi~~s~k~~v~~~~~~~~~~~d~~~Dg~i~~eey~~~~~~~~~~~~~~-~d~e~~~ 156 (325)
T KOG4223|consen 78 RLGKLVPKIDSDSDGFVTESELKAWIMQSQKKYVVEEAARRWDEYDKNKDGFITWEEYLPQTYGRVDLPDEF-PDEEDNE 156 (325)
T ss_pred HHHHHHhhhcCCCCCceeHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeHHHhhhhhhhcccCcccc-ccchhcH
Confidence 345789999999999999999999998777777777777777778 68899999999753332211111100 0000010
Q ss_pred ch----HHHhhhhcC-----CCcccHHHHHHHHhcCCCCcccch
Q psy4949 140 TD----TLAQEIFSG-----NGKVTVNDFMDTMMSEPGPACLIW 174 (275)
Q Consensus 140 ~e----~~v~~cF~~-----d~~Is~~eFl~~~~~d~~Pq~lvW 174 (275)
.. ..=+.-|.. ||.+|++||...+==+..|+..-|
T Consensus 157 ~~~km~~rDe~rFk~AD~d~dg~lt~EEF~aFLHPEe~p~M~~i 200 (325)
T KOG4223|consen 157 EYKKMIARDEERFKAADQDGDGSLTLEEFTAFLHPEEHPHMKDI 200 (325)
T ss_pred HHHHHHHHHHHHHhhcccCCCCcccHHHHHhccChhhcchHHHH
Confidence 10 122334553 789999999997722224444444
No 111
>KOG0377|consensus
Probab=81.10 E-value=4.2 Score=40.16 Aligned_cols=29 Identities=14% Similarity=0.061 Sum_probs=24.4
Q ss_pred HHHHHhhcCCCCCeeehHHHHHHHHHhcC
Q psy4949 63 NWLLSAYSVESLGRIRVFSIKVALATMCS 91 (275)
Q Consensus 63 ~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~ 91 (275)
+-+-+..|-|+||.||+.||.-|+-+.=+
T Consensus 590 ~~la~~mD~NkDG~IDlNEfLeAFrlvdr 618 (631)
T KOG0377|consen 590 LELARSMDLNKDGKIDLNEFLEAFRLVDR 618 (631)
T ss_pred HHHHHhhccCCCCcccHHHHHHHHhhhcc
Confidence 35678999999999999999999876544
No 112
>PLN02952 phosphoinositide phospholipase C
Probab=77.05 E-value=10 Score=38.97 Aligned_cols=89 Identities=11% Similarity=0.185 Sum_probs=59.0
Q ss_pred CCCeeehHHHHHHHHHhcC--CChhhHHHHhchhhccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcC
Q psy4949 73 SLGRIRVFSIKVALATMCS--GKLMDKLRYIFSQLCDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG 150 (275)
Q Consensus 73 ~~G~I~~~ef~~aLs~Lc~--G~l~dKlr~~F~ly~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~ 150 (275)
..|+++|.+|....-.+-. ...-+=++.+|..|+.+++.|+.++|..+|++...... .+....+..++.++..
T Consensus 13 ~~g~l~f~~f~~f~~~~k~~~~~~r~ei~~lf~~~~~~~~~mt~~~l~~FL~~~Q~e~~-----~~~~~~~~i~~~~~~~ 87 (599)
T PLN02952 13 DSGSYNYKMFNLFNRKFKITEAEPPDDVKDVFCKFSVGGGHMGADQLRRFLVLHQDELD-----CTLAEAQRIVEEVINR 87 (599)
T ss_pred cCCCcCHHHHHHHHHHhccccCCChHHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCcC-----CCHHHHHHHHHHHHhh
Confidence 4689999999876665532 23455678999999877789999999999998643321 0000012223322221
Q ss_pred --------CCcccHHHHHHHHhcC
Q psy4949 151 --------NGKVTVNDFMDTMMSE 166 (275)
Q Consensus 151 --------d~~Is~~eFl~~~~~d 166 (275)
...++++.|..+++++
T Consensus 88 ~~~~~~~~~~~l~~~~F~~~l~s~ 111 (599)
T PLN02952 88 RHHVTRYTRHGLNLDDFFHFLLYD 111 (599)
T ss_pred ccccccccccCcCHHHHHHHHcCc
Confidence 2468999999999864
No 113
>KOG0169|consensus
Probab=76.07 E-value=32 Score=36.04 Aligned_cols=127 Identities=12% Similarity=0.196 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCCccChHHHH-----------HHHHHHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHH
Q psy4949 30 RFETLLSSLYHNLNKRLPVSQQVHVEVLS-----------GLLLNWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKL 98 (275)
Q Consensus 30 ~l~~~L~~lY~~~~k~~P~~~~v~~~~~~-----------~l~~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKl 98 (275)
+.+.=++++|+.+.+.-- +.++.++.. +.++-.+|+--|..++|++-..++.-..-.++.-. -.
T Consensus 133 ~~~~wi~~~~~~ad~~~~--~~~~~~~~~~~~~~~n~~l~~~~~~~~f~e~~~~~~~k~~~~~~~~~~~~~~~rp---ev 207 (746)
T KOG0169|consen 133 RREHWIHSIFQEADKNKN--GHMSFDEVLDLLKQLNVQLSESKARRLFKESDNSQTGKLEEEEFVKFRKELTKRP---EV 207 (746)
T ss_pred hHHHHHHHHHHHHccccc--cccchhhHHHHHHHHHHhhhHHHHHHHHHHHHhhccceehHHHHHHHHHhhccCc---hH
Confidence 445566777777655421 222222222 22333455555778888888888877776666544 56
Q ss_pred HHhchhhccCCCceeHHHHHHHHHHHHhchhhccCC-CCCCCchHHHhh-----hhcCCCcccHHHHHHHHhcCC
Q psy4949 99 RYIFSQLCDCNGHLVAWKFNEYLQDVLAIPAAVLES-PSFSYTDTLAQE-----IFSGNGKVTVNDFMDTMMSEP 167 (275)
Q Consensus 99 r~~F~ly~D~nG~i~~~el~~~L~~i~~i~~~~gE~-~~f~~~e~~v~~-----cF~~d~~Is~~eFl~~~~~d~ 167 (275)
+.+|..|+++.+.++-.+|..+|++.- +|. .+....++.++. .|...+.++++.|..++.+..
T Consensus 208 ~~~f~~~s~~~~~ls~~~L~~Fl~~~q------~e~~~~~~~ae~ii~~~e~~k~~~~~~~l~ldgF~~yL~S~~ 276 (746)
T KOG0169|consen 208 YFLFVQYSHGKEYLSTDDLLRFLEEEQ------GEDGATLDEAEEIIERYEPSKEFRRHGLLSLDGFTRYLFSPD 276 (746)
T ss_pred HHHHHHHhCCCCccCHHHHHHHHHHhc------ccccccHHHHHHHHHHhhhhhhccccceecHHHHHHHhcCcc
Confidence 778888988899999999999998761 111 111111333322 244467899999999998754
No 114
>COG1379 PHP family phosphoesterase with a Zn ribbon [General function prediction only]
Probab=75.23 E-value=3.3 Score=39.27 Aligned_cols=93 Identities=19% Similarity=0.432 Sum_probs=54.8
Q ss_pred HHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcC--CCcccHHHHHHHHhcCCCCcccchhhhhhcccccCCCCcCccc
Q psy4949 116 KFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG--NGKVTVNDFMDTMMSEPGPACLIWLPLLHRLTAVESTSHPIAC 193 (275)
Q Consensus 116 el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~--d~~Is~~eFl~~~~~d~~Pq~lvWL~~~~r~~~~~~~~h~~~C 193 (275)
+|...+.++-.+|=.....+.-.++....+. |.+ ...+|.++|...+... +.+-+-+ =+.+.....-.|.+.|
T Consensus 175 dmAD~I~el~~~pFLtNSDAHSp~phrLgRE-fn~f~v~~~sF~~~r~Ai~~~--~g~~iva--NyGLdP~LGKY~~TAC 249 (403)
T COG1379 175 DMADMIEELHRLPFLTNSDAHSPYPHRLGRE-FNQFEVEEISFEELRKAIKGK--DGCKIVA--NYGLDPRLGKYHLTAC 249 (403)
T ss_pred hHHHHHHHhccCCcccccccCCCchhhhhhh-hheeecccCCHHHHHHHHhcC--CCceEEE--ecCcCccccchhHHHH
Confidence 4556666555554211111111122334444 554 4788999999988654 3332111 1222233356789999
Q ss_pred CcCCC----CccccceeeeccCCC
Q psy4949 194 DACGR----ANFVGFRYRCAKCGN 213 (275)
Q Consensus 194 d~C~~----~pI~G~RykC~~C~~ 213 (275)
.-|.. .+..+.||+|.+|-.
T Consensus 250 ~rC~t~y~le~A~~~~wrCpkCGg 273 (403)
T COG1379 250 SRCYTRYSLEEAKSLRWRCPKCGG 273 (403)
T ss_pred HHhhhccCcchhhhhcccCccccc
Confidence 99993 488889999999976
No 115
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=73.37 E-value=14 Score=25.46 Aligned_cols=26 Identities=12% Similarity=0.063 Sum_probs=13.2
Q ss_pred HHHHHHHhhcCCCCCeeehHHHHHHH
Q psy4949 61 LLNWLLSAYSVESLGRIRVFSIKVAL 86 (275)
Q Consensus 61 ~~~~lf~~fD~~~~G~I~~~ef~~aL 86 (275)
++..||.--|++++|++.-.||.-..
T Consensus 22 yA~~LFq~~D~s~~g~Le~~Ef~~Fy 47 (51)
T PF14788_consen 22 YARQLFQECDKSQSGRLEGEEFEEFY 47 (51)
T ss_dssp HHHHHHHHH-SSSSSEBEHHHHHHHH
T ss_pred HHHHHHHHhcccCCCCccHHHHHHHH
Confidence 34445555555555555555554433
No 116
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=72.25 E-value=2.6 Score=29.15 Aligned_cols=28 Identities=43% Similarity=1.038 Sum_probs=17.0
Q ss_pred ccCcCCCCcccc--------ceeeeccCCCCccchhhh
Q psy4949 192 ACDACGRANFVG--------FRYRCAKCGNFQMCQECF 221 (275)
Q Consensus 192 ~Cd~C~~~pI~G--------~RykC~~C~~~dLC~~C~ 221 (275)
.|-+|.. ++.. .||+|.+|.+. .|.+|-
T Consensus 1 ~CfgC~~-~~~~~~~~~~~~~~y~C~~C~~~-FC~dCD 36 (51)
T PF07975_consen 1 YCFGCQK-PFPDGPEKKADSSRYRCPKCKNH-FCIDCD 36 (51)
T ss_dssp EETTTTE-E-TTS-------EEE--TTTT---B-HHHH
T ss_pred CCccCCC-CCCCcccccccCCeEECCCCCCc-cccCcC
Confidence 3667776 4443 69999999985 899997
No 117
>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....
Probab=71.94 E-value=5.7 Score=25.41 Aligned_cols=38 Identities=24% Similarity=0.581 Sum_probs=26.8
Q ss_pred CcccCcCCCCccccceeeeccCCCCccchhhhhCCcccCCCCCCCcee
Q psy4949 190 PIACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEVK 237 (275)
Q Consensus 190 ~~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~g~~~~~H~~~H~m~ 237 (275)
+..|+.|...+ .+|-|..|.. -+|..|...+ |+. |.+.
T Consensus 3 ~~~C~~H~~~~---~~~~C~~C~~-~~C~~C~~~~-----H~~-H~~~ 40 (42)
T PF00643_consen 3 EPKCPEHPEEP---LSLFCEDCNE-PLCSECTVSG-----HKG-HKIV 40 (42)
T ss_dssp SSB-SSTTTSB---EEEEETTTTE-EEEHHHHHTS-----TTT-SEEE
T ss_pred CccCccCCccc---eEEEecCCCC-ccCccCCCCC-----CCC-CEEe
Confidence 35688887643 6799999988 5999999654 443 6654
No 118
>PF02207 zf-UBR: Putative zinc finger in N-recognin (UBR box); InterPro: IPR003126 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The N-end rule-based degradation signal, which targets a protein for ubiquitin-dependent proteolysis, comprises a destabilising amino-terminal residue and a specific internal lysine residue. This entry describes a putative zinc finger in N-recognin, a recognition component of the N-end rule pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0004842 ubiquitin-protein ligase activity, 0008270 zinc ion binding; PDB: 3NY1_B 3NIS_F 3NIM_A 3NIK_A 3NII_A 3NIH_A 3NIL_D 3NIN_B 3NIJ_A 3NIT_A ....
Probab=71.55 E-value=2.6 Score=30.73 Aligned_cols=34 Identities=32% Similarity=0.637 Sum_probs=22.1
Q ss_pred ceeeeccCCC---CccchhhhhCCcccCCCCCCCceeeecCC
Q psy4949 204 FRYRCAKCGN---FQMCQECFWWGRVSGGHNLEHEVKENHPV 242 (275)
Q Consensus 204 ~RykC~~C~~---~dLC~~C~~~g~~~~~H~~~H~m~e~~~~ 242 (275)
.=|+|..|.. .-+|.+||..+ .|. +|.+..+.+.
T Consensus 12 ~~y~C~tC~~~~~~~iC~~CF~~~----~H~-gH~~~~~~~~ 48 (71)
T PF02207_consen 12 IFYRCLTCSLDESSGICEECFANS----CHE-GHRVVYYRSS 48 (71)
T ss_dssp EEEEETTTBSSTT-BBEHHHHCTS----GGG-GSSEEEEE--
T ss_pred EEEECccCCCCCCEEEchhhCCCC----CcC-CCcEEEEEeC
Confidence 3489999975 77899999543 444 6776666544
No 119
>KOG3555|consensus
Probab=71.31 E-value=4.6 Score=38.61 Aligned_cols=95 Identities=18% Similarity=0.375 Sum_probs=55.5
Q ss_pred hHHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcC-----CCcccHHHHHHHHhcCCCC
Q psy4949 96 DKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG-----NGKVTVNDFMDTMMSEPGP 169 (275)
Q Consensus 96 dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~-----d~~Is~~eFl~~~~~d~~P 169 (275)
+-+.|+|+-+ .+.+|.+++.||..|-.+ ..|.-++.+|.. ||.||.+|+-..+++.. |
T Consensus 250 ds~gWMFnklD~N~Dl~Ld~sEl~~I~ld---------------knE~CikpFfnsCD~~kDg~iS~~EWC~CF~k~~-~ 313 (434)
T KOG3555|consen 250 DSLGWMFNKLDTNYDLLLDQSELRAIELD---------------KNEACIKPFFNSCDTYKDGSISTNEWCYCFQKSD-P 313 (434)
T ss_pred hhhhhhhhccccccccccCHHHhhhhhcc---------------CchhHHHHHHhhhcccccCccccchhhhhhccCC-C
Confidence 4578999999 577899999998643321 224444444443 89999999888777644 4
Q ss_pred cccchhhhhhcccccCCCCc--CcccCcCCCCccccceeeeccCCC
Q psy4949 170 ACLIWLPLLHRLTAVESTSH--PIACDACGRANFVGFRYRCAKCGN 213 (275)
Q Consensus 170 q~lvWL~~~~r~~~~~~~~h--~~~Cd~C~~~pI~G~RykC~~C~~ 213 (275)
.+..-+. |++-.+..++ |+.=--|. +-|+ ||=.+|.+
T Consensus 314 pc~~e~~---riqk~~~~k~llG~fiP~CD---eeGy-YkptQCH~ 352 (434)
T KOG3555|consen 314 PCQAELC---RIQKHDVDKKLLGAFIPRCD---EEGY-YKPTQCHG 352 (434)
T ss_pred ccccHHH---HHHhhhccchhcccccCCCc---cccc-ccchhccC
Confidence 4544333 3333333333 33322232 2344 55555554
No 120
>KOG1029|consensus
Probab=70.05 E-value=9.8 Score=40.05 Aligned_cols=93 Identities=20% Similarity=0.175 Sum_probs=63.8
Q ss_pred hHHHHHHHHHHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhcc
Q psy4949 54 VEVLSGLLLNWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVL 132 (275)
Q Consensus 54 ~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~g 132 (275)
|+....+=...+||+.|+.++|.++=..-..+| +-+|-+.--|--++.|- +|+||.++-+||..-+. ++.+ .+-|
T Consensus 189 Vp~~~klKY~QlFNa~DktrsG~Lsg~qaR~aL--~qS~Lpq~~LA~IW~LsDvd~DGkL~~dEfilam~-liem-a~sG 264 (1118)
T KOG1029|consen 189 VPQHNKLKYRQLFNALDKTRSGYLSGQQARSAL--GQSGLPQNQLAHIWTLSDVDGDGKLSADEFILAMH-LIEM-AKSG 264 (1118)
T ss_pred ccchhhhHHHHHhhhcccccccccccHHHHHHH--HhcCCchhhHhhheeeeccCCCCcccHHHHHHHHH-HHHH-HhcC
Confidence 455556656679999999999999876655544 45777888899999998 79999999999854333 2222 1234
Q ss_pred CCCCCCCchHHHhhhhcC
Q psy4949 133 ESPSFSYTDTLAQEIFSG 150 (275)
Q Consensus 133 E~~~f~~~e~~v~~cF~~ 150 (275)
+.....-+.+.|.-||..
T Consensus 265 q~lP~tlP~E~Vpp~~r~ 282 (1118)
T KOG1029|consen 265 QPLPKTLPPELVPPSFRS 282 (1118)
T ss_pred CCCCCCCChhhcCccccc
Confidence 433233345677777765
No 121
>KOG0041|consensus
Probab=69.16 E-value=6.8 Score=34.86 Aligned_cols=80 Identities=13% Similarity=0.285 Sum_probs=46.3
Q ss_pred eehHHHHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhc-CCCcc
Q psy4949 77 IRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFS-GNGKV 154 (275)
Q Consensus 77 I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~-~d~~I 154 (275)
.++.+.-+-++-.++-.+ +-+.-+|++| .|.||+|+-.||..++.-+ |+.-+--+.-+.+..+=. .||+|
T Consensus 81 ~kv~n~yteF~eFsrkqI-k~~~~~Fk~yDe~rDgfIdl~ELK~mmEKL-------gapQTHL~lK~mikeVded~dgkl 152 (244)
T KOG0041|consen 81 LKVFNVYTEFSEFSRKQI-KDAESMFKQYDEDRDGFIDLMELKRMMEKL-------GAPQTHLGLKNMIKEVDEDFDGKL 152 (244)
T ss_pred ccccchhhhhhHHHHHHH-HHHHHHHHHhcccccccccHHHHHHHHHHh-------CCchhhHHHHHHHHHhhcccccch
Confidence 444444444553443322 3356699999 6999999999998777642 322111112222333222 37899
Q ss_pred cHHHHHHHHh
Q psy4949 155 TVNDFMDTMM 164 (275)
Q Consensus 155 s~~eFl~~~~ 164 (275)
|.-||+=...
T Consensus 153 SfreflLIfr 162 (244)
T KOG0041|consen 153 SFREFLLIFR 162 (244)
T ss_pred hHHHHHHHHH
Confidence 9999876543
No 122
>PF12767 SAGA-Tad1: Transcriptional regulator of RNA polII, SAGA, subunit; InterPro: IPR024738 The yeast Spt-Ada-Gcn5-Acetyl (SAGA) transferase complex is a multifunctional coactivator involved in multiple cellular processes [], including regulation of transcription by RNA polymerase II [, ]. It is formed of five major modular subunits and shows a high degree of structural conservation to human TFTC and STAGA []. This entry represents Ada1 (known as Tada1 in higher eukaryotes), one of the subunits that constitute the SAGA core. It also functions as a component of the SALSA and SLIK complexes. ; GO: 0070461 SAGA-type complex
Probab=68.94 E-value=6.8 Score=35.49 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=44.4
Q ss_pred CCCeeehHHHHHHHHHhcCCChhhHHHHhchhhccCCCceeHHHHHHHHHHHH
Q psy4949 73 SLGRIRVFSIKVALATMCSGKLMDKLRYIFSQLCDCNGHLVAWKFNEYLQDVL 125 (275)
Q Consensus 73 ~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly~D~nG~i~~~el~~~L~~i~ 125 (275)
..++|++.+.|..|.-..+-.-.++|..+++.|. .|.++|.||..++..++
T Consensus 5 ~~~Ridl~~lk~~l~~~LG~~~~~~Y~~~l~~fl--~~klsk~Efd~~~~~~L 55 (252)
T PF12767_consen 5 QNSRIDLEELKSQLQKRLGPDRWKKYFQSLKRFL--SGKLSKEEFDKECRRIL 55 (252)
T ss_pred cccccCHHHHHHHHHHHHChHHHHHHHHHHHHHH--HhccCHHHHHHHHHHHh
Confidence 5789999999999999998788999999999996 58999999988776554
No 123
>COG5259 RSC8 RSC chromatin remodeling complex subunit RSC8 [Chromatin structure and dynamics / Transcription]
Probab=67.57 E-value=2.9 Score=41.29 Aligned_cols=41 Identities=32% Similarity=0.814 Sum_probs=33.9
Q ss_pred CcCcccCcCCCCccccceeeeccCCCCccchhhhhCCcccCC
Q psy4949 188 SHPIACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGG 229 (275)
Q Consensus 188 ~h~~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~g~~~~~ 229 (275)
.|...|+-|+...+. .||.-++=..|++|..||..|+.+..
T Consensus 222 ~~~~~C~~cG~~~~~-t~y~nlra~~~n~C~~C~~qg~f~s~ 262 (531)
T COG5259 222 KHPSSCSCCGNKSFN-TRYHNLRAEKYNSCSECYDQGRFPSE 262 (531)
T ss_pred cCCceeeccCccccc-hhhhhhhhhhcccchHHHhcCcCCCc
Confidence 457899999985544 58999999999999999999986553
No 124
>KOG0039|consensus
Probab=65.64 E-value=6.3 Score=40.76 Aligned_cols=50 Identities=20% Similarity=0.251 Sum_probs=45.0
Q ss_pred CCeeehHHHHHHHHHhcCCChhhHHHHhchhhccCCCceeHHHHHHHHHHHHhchh
Q psy4949 74 LGRIRVFSIKVALATMCSGKLMDKLRYIFSQLCDCNGHLVAWKFNEYLQDVLAIPA 129 (275)
Q Consensus 74 ~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly~D~nG~i~~~el~~~L~~i~~i~~ 129 (275)
+| |++.+++ ...++.++|++-.|.++...+|.++.++...++..++.+-.
T Consensus 2 ~~-~~~~~~~-----~~~~~~d~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~ 51 (646)
T KOG0039|consen 2 EG-ISFQELK-----ITDCSYDDKLQTFFDMYDKGDGKLTEEEVRELIMSSISANW 51 (646)
T ss_pred CC-cchhhhc-----ccCCChhHHHHHHHHHHhhhcCCccHHHHHHHHHHHHHhhh
Confidence 57 8999999 78999999999999999889999999999999988877754
No 125
>KOG1778|consensus
Probab=64.49 E-value=3.4 Score=39.12 Aligned_cols=35 Identities=17% Similarity=0.486 Sum_probs=29.7
Q ss_pred CcCcccCcCCCCccccceeeeccCCCCccchhhhhCC
Q psy4949 188 SHPIACDACGRANFVGFRYRCAKCGNFQMCQECFWWG 224 (275)
Q Consensus 188 ~h~~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~g 224 (275)
+-...|..|.. +. ..+|.|..|++||.|..|+...
T Consensus 167 ~~~~~c~~c~~-~~-~~~~~c~~~~d~d~~~~~~~k~ 201 (319)
T KOG1778|consen 167 WFAYTCPICKL-EV-LTAWHCEVCPDYDRCRACEEKP 201 (319)
T ss_pred ceeeecCcccc-cc-ccccccccCCchhhhhcccCCC
Confidence 34689999998 54 7889999999999999999654
No 126
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=64.40 E-value=22 Score=29.88 Aligned_cols=71 Identities=17% Similarity=0.220 Sum_probs=43.8
Q ss_pred HHHHHHHHHHcCCCCcCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcCCCCCeeehHHHHH
Q psy4949 5 IWNVIEAFRENGLNAIELQSDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSIKV 84 (275)
Q Consensus 5 ~~~~~e~f~~~~l~~~~~~~~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~~ 84 (275)
|..+.++|-.+| .. ...+|+... |.++-++| +.++-. ...--+..+|+-+-..+..+|+|.+|..
T Consensus 1 L~~~F~~f~~fG-~~--~~~~m~~~~--------F~Kl~kD~---~i~d~k-~t~tdvDiiF~Kvk~k~~~~I~f~~F~~ 65 (154)
T PF05517_consen 1 LEAVFKAFASFG-KK--NGTEMDSKN--------FAKLCKDC---GIIDKK-LTSTDVDIIFSKVKAKGARKITFEQFLE 65 (154)
T ss_dssp HHHHHHHHHCSS-TS--TSSEEEHHH--------HHHHHHHT---SS--SS-S-HHHHHHHHHHHT-SS-SEEEHHHHHH
T ss_pred CHHHHHHHHHhc-CC--ccccccHHH--------HHHHHHHc---CCCCCC-CchHHHHHHHHHhhcCCCcccCHHHHHH
Confidence 345677788888 32 456788888 33344554 344433 2333346777777667777899999999
Q ss_pred HHHHhc
Q psy4949 85 ALATMC 90 (275)
Q Consensus 85 aLs~Lc 90 (275)
||..++
T Consensus 66 aL~~lA 71 (154)
T PF05517_consen 66 ALAELA 71 (154)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999765
No 127
>PF14788 EF-hand_10: EF hand; PDB: 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B 1DJZ_B 1DJY_B 1DJX_B 1QAT_A 1DJH_A ....
Probab=63.82 E-value=20 Score=24.82 Aligned_cols=48 Identities=21% Similarity=0.360 Sum_probs=33.8
Q ss_pred eeehHHHHHHHHHhcCCChhhHH-HHhchhh-ccCCCceeHHHHHHHHHHH
Q psy4949 76 RIRVFSIKVALATMCSGKLMDKL-RYIFSQL-CDCNGHLVAWKFNEYLQDV 124 (275)
Q Consensus 76 ~I~~~ef~~aLs~Lc~G~l~dKl-r~~F~ly-~D~nG~i~~~el~~~L~~i 124 (275)
+++|.|.+.-|-.+ +=.+.+.| +.+|+-. .+++|.+..+|+..+.+.+
T Consensus 1 kmsf~Evk~lLk~~-NI~~~~~yA~~LFq~~D~s~~g~Le~~Ef~~Fy~~L 50 (51)
T PF14788_consen 1 KMSFKEVKKLLKMM-NIEMDDEYARQLFQECDKSQSGRLEGEEFEEFYKRL 50 (51)
T ss_dssp EBEHHHHHHHHHHT-T----HHHHHHHHHHH-SSSSSEBEHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH-ccCcCHHHHHHHHHHhcccCCCCccHHHHHHHHHHh
Confidence 46788888888755 44455555 6788877 4678999999999988754
No 128
>PF00427 PBS_linker_poly: Phycobilisome Linker polypeptide; InterPro: IPR001297 Phycobilisomes (PBSs) are the major light-harvesting systems in cyanobacteria and red algae. PBS is a supercomplex that is composed of a core complex and multiple peripheral rod complexes. Typically, the core consists of two or five cylinders lying on the membrane with, in most cases, multiple rods radiating from the core to form a hemidiscoidal structure. The building units of the core cylinders and the peripheral rods are trimeric and hexameric discs, in which a monomer consists of a pair of related phycobiliproteins (PBPs), such as phycorerythrins, phycoerythrocyanins, phycocyanins, and allophycocyanins. The discs are connected to each other via specific linker polypeptides to form peripheral rods or core cylinders. Linker polypeptides share a conserved domain of ~180 residues, which can be present in one or multiple copies [, , , , ].; GO: 0015979 photosynthesis, 0030089 phycobilisome; PDB: 2L8V_A 2KY4_A 3OSJ_D 2L06_A 3NPH_B 2L3W_A 3PRU_C 3OHW_A.
Probab=61.45 E-value=22 Score=29.34 Aligned_cols=52 Identities=25% Similarity=0.290 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhhc-CCCCCccChHHHHHHHHHHHHHhhcCCCCCeeehHHHHHHHH
Q psy4949 24 SDVSVARFETLLSSLYHNLNKR-LPVSQQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSIKVALA 87 (275)
Q Consensus 24 ~~l~~~~l~~~L~~lY~~~~k~-~P~~~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~~aLs 87 (275)
...+.++++.++...|++.-.+ .|. ..+...++=..+ ++|.|+|++|+-+|+
T Consensus 3 ~~~s~~~~~~vI~AaYrQVf~~~~~~----~~er~~~lESql--------rng~IsVreFVr~La 55 (131)
T PF00427_consen 3 PNSSEEELEAVIRAAYRQVFGNDHPM----ESERLISLESQL--------RNGQISVREFVRALA 55 (131)
T ss_dssp TTS-HHHHHHHHHHHHHHHHSSSSSH----CSHHTHHHHHHH--------HTTSS-HHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCccch----hhhccchHHHHH--------HcCCCcHHHHHHHHH
Confidence 3478899999999999997643 232 222221111111 699999999999998
No 129
>PF13842 Tnp_zf-ribbon_2: DDE_Tnp_1-like zinc-ribbon
Probab=60.59 E-value=6 Score=24.51 Aligned_cols=27 Identities=33% Similarity=0.920 Sum_probs=19.5
Q ss_pred ccCcCCCCcccc-ceeeeccCCCCccchh
Q psy4949 192 ACDACGRANFVG-FRYRCAKCGNFQMCQE 219 (275)
Q Consensus 192 ~Cd~C~~~pI~G-~RykC~~C~~~dLC~~ 219 (275)
.|..|....+.- .+|.|..| +-.||.+
T Consensus 2 rC~vC~~~k~rk~T~~~C~~C-~v~lC~~ 29 (32)
T PF13842_consen 2 RCKVCSKKKRRKDTRYMCSKC-DVPLCVE 29 (32)
T ss_pred CCeECCcCCccceeEEEccCC-CCcccCC
Confidence 467777754444 79999999 5778865
No 130
>PF04876 Tenui_NCP: Tenuivirus major non-capsid protein; InterPro: IPR006960 This entry contains the tenuivirus major non-capsid protein. Proteins accumulate in large amounts in tenuivirus infected cells. They are found in the inclusion bodies that are formed after infection [].
Probab=58.97 E-value=28 Score=29.46 Aligned_cols=70 Identities=11% Similarity=0.142 Sum_probs=56.2
Q ss_pred ChHHHHHHHHHHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhhccCCCceeHHHHHHHHHHHHhchh
Q psy4949 53 HVEVLSGLLLNWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQLCDCNGHLVAWKFNEYLQDVLAIPA 129 (275)
Q Consensus 53 ~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly~D~nG~i~~~el~~~L~~i~~i~~ 129 (275)
+.++...-++..|+..=|.+.+|.|+...|...|---|++ |+=.=|.-++..||++++..++..|+.+..
T Consensus 76 hmP~~~~s~Lehllg~~~~~~n~~i~~~~ff~~lQ~~lGd-------WIT~~~Lkh~n~MSk~Qik~L~~~Ii~~ak 145 (175)
T PF04876_consen 76 HMPEFCHSFLEHLLGGEDDSTNGLIDIGKFFDILQPKLGD-------WITKNFLKHPNRMSKDQIKTLCEQIIEMAK 145 (175)
T ss_pred HhhHHHHHHHHHHhcCCcCCcccceeHHHHHHHHHHHhhh-------HHHHHHHhccchhhHHHHHHHHHHHHHHHh
Confidence 4566777788899999888889999999999887655554 555556678889999999999999888865
No 131
>PF14658 EF-hand_9: EF-hand domain
Probab=57.40 E-value=54 Score=23.82 Aligned_cols=51 Identities=22% Similarity=0.242 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcCCCC-CeeehHHHHHHHH
Q psy4949 23 QSDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVESL-GRIRVFSIKVALA 87 (275)
Q Consensus 23 ~~~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~~~~-G~I~~~ef~~aLs 87 (275)
...+.+.+|.++|+.+= .+.|. +.. +.-|-+.+|+++. |.|+|..|...+.
T Consensus 12 tG~V~v~~l~~~Lra~~----~~~p~------e~~----Lq~l~~elDP~g~~~~v~~d~F~~iM~ 63 (66)
T PF14658_consen 12 TGRVPVSDLITYLRAVT----GRSPE------ESE----LQDLINELDPEGRDGSVNFDTFLAIMR 63 (66)
T ss_pred CceEeHHHHHHHHHHHc----CCCCc------HHH----HHHHHHHhCCCCCCceEeHHHHHHHHH
Confidence 45688888666666542 22232 333 3456688999988 9999999998875
No 132
>KOG0040|consensus
Probab=56.87 E-value=44 Score=38.11 Aligned_cols=92 Identities=16% Similarity=0.313 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCC--CccChHHHHHHHHHHHHHhhcCCCCCeeehHHHHHHHHHhcC-------CChhhHHH
Q psy4949 29 ARFETLLSSLYHNLNKRLPVS--QQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSIKVALATMCS-------GKLMDKLR 99 (275)
Q Consensus 29 ~~l~~~L~~lY~~~~k~~P~~--~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~-------G~l~dKlr 99 (275)
.++-.+...|-+++++---.. .-|+.+.-.+ .+.+|.-||.+++|+++-..|+..|-.+-. |.++-+++
T Consensus 2222 dQl~qL~~rMqhnlEQqIqarn~~GVtEe~L~E--Fs~~fkhFDkek~G~Ldhq~F~sCLrslgY~lpmvEe~~~~p~fe 2299 (2399)
T KOG0040|consen 2222 DQLDQLMMRMQHNLEQQIQARNHNGVTEEQLKE--FSMMFKHFDKEKNGRLDHQHFKSCLRSLGYDLPMVEEGEPEPEFE 2299 (2399)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCCCCHHHHHH--HHHHHHHhchhhccCCcHHHHHHHHHhcCCCCcccccCCCChhHH
Confidence 345556666666665421110 0133222222 257899999999999999999998876543 55566999
Q ss_pred Hhchhhc-cCCCceeHHHHHHHHH
Q psy4949 100 YIFSQLC-DCNGHLVAWKFNEYLQ 122 (275)
Q Consensus 100 ~~F~ly~-D~nG~i~~~el~~~L~ 122 (275)
-+-.+.. +.+|+|+..+.-.++-
T Consensus 2300 ~~ld~vDP~r~G~Vsl~dY~afmi 2323 (2399)
T KOG0040|consen 2300 EILDLVDPNRDGYVSLQDYMAFMI 2323 (2399)
T ss_pred HHHHhcCCCCcCcccHHHHHHHHH
Confidence 9988772 4479999999866653
No 133
>KOG4403|consensus
Probab=55.03 E-value=9.8 Score=37.41 Aligned_cols=56 Identities=25% Similarity=0.271 Sum_probs=43.0
Q ss_pred CCCCeeehHHHHHHHHHhcCCChhhHH-----HHhchhh-ccCCCceeHHHHHHHHHHHHhch
Q psy4949 72 ESLGRIRVFSIKVALATMCSGKLMDKL-----RYIFSQL-CDCNGHLVAWKFNEYLQDVLAIP 128 (275)
Q Consensus 72 ~~~G~I~~~ef~~aLs~Lc~G~l~dKl-----r~~F~ly-~D~nG~i~~~el~~~L~~i~~i~ 128 (275)
.++.+..-.+|..+.+..|... +||+ |-+-++. .|.||.|+.+|=..||++=++.-
T Consensus 40 agds~at~nefc~~~~~~c~s~-~dklg~EAir~iHrqmDDD~nG~Id~~ESdeFlrEdmky~ 101 (575)
T KOG4403|consen 40 AGDSRATRNEFCEVDAPECKSE-QDKLGYEAIRDIHRQMDDDHNGSIDVEESDEFLREDMKYR 101 (575)
T ss_pred cCCchhhhccchhcCCchhhcc-cchhhHHHHHHHHHhcccccCCCcccccchHHHHHHhhcc
Confidence 4555666677778888888655 6777 4577777 68999999999999999866663
No 134
>KOG4251|consensus
Probab=54.62 E-value=16 Score=33.58 Aligned_cols=57 Identities=11% Similarity=0.199 Sum_probs=40.7
Q ss_pred HHHHHHHhhcCCCCCeeehHHHHHHHHHhcCCChh-------------hHHHHhchhh-ccCCCceeHHHHHHHH
Q psy4949 61 LLNWLLSAYSVESLGRIRVFSIKVALATMCSGKLM-------------DKLRYIFSQL-CDCNGHLVAWKFNEYL 121 (275)
Q Consensus 61 ~~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~-------------dKlr~~F~ly-~D~nG~i~~~el~~~L 121 (275)
+.+-+.+.||.|++-.+++.+|+.+. -|+++ +++|-.=.++ ++++|.+|-+|+..+.
T Consensus 237 mVkeivrdlDqdgDkqlSvpeFislp----vGTVenqqgqdiddnwvkdRkkEFeElIDsNhDGivTaeELe~y~ 307 (362)
T KOG4251|consen 237 MVKEIVRDLDQDGDKQLSVPEFISLP----VGTVENQQGQDIDDNWVKDRKKEFEELIDSNHDGIVTAEELEDYV 307 (362)
T ss_pred HHHHHHHHhccCCCeeecchhhhcCC----CcchhhhhccchHHHHHHHHHHHHHHHhhcCCccceeHHHHHhhc
Confidence 45568899999999999999997543 34433 2333333445 5778999999997664
No 135
>KOG4065|consensus
Probab=54.10 E-value=72 Score=26.07 Aligned_cols=63 Identities=11% Similarity=0.029 Sum_probs=39.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHhhcC-CCCCccChHHHHHHHHHHHHHhhcCCCCCeeehHHHHHH
Q psy4949 21 ELQSDVSVARFETLLSSLYHNLNKRL-PVSQQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSIKVA 85 (275)
Q Consensus 21 ~~~~~l~~~~l~~~L~~lY~~~~k~~-P~~~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~~a 85 (275)
+.+.-|+=-+|.+.|+-.-.+-+... |. .+..+.-..-+..-+++--|.|+||.|+..||.-+
T Consensus 79 dknn~lDGiEl~kAiTH~H~~h~~ghep~--Pl~sE~Ele~~iD~vL~DdDfN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 79 DKNNFLDGIELLKAITHTHDAHDSGHEPV--PLSSEAELERLIDAVLDDDDFNGDGVIDYGEFLKR 142 (144)
T ss_pred CcCCcchHHHHHHHHHHHhhhhhcCCCCC--CCCCHHHHHHHHHHHhcccccCCCceeeHHHHHhh
Confidence 34566777777777766655432221 11 22222233445667888889999999999999754
No 136
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=50.52 E-value=18 Score=23.98 Aligned_cols=25 Identities=16% Similarity=0.280 Sum_probs=19.9
Q ss_pred HHhchhhc--cC-CCceeHHHHHHHHHH
Q psy4949 99 RYIFSQLC--DC-NGHLVAWKFNEYLQD 123 (275)
Q Consensus 99 r~~F~ly~--D~-nG~i~~~el~~~L~~ 123 (275)
--+|..|+ || ...+++.||..+|+.
T Consensus 9 I~vFhkYa~~~Gd~~~Lsk~Elk~Ll~~ 36 (44)
T PF01023_consen 9 IDVFHKYAGKEGDKDTLSKKELKELLEK 36 (44)
T ss_dssp HHHHHHHHTSSSSTTSEEHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCCeEcHHHHHHHHHH
Confidence 45899997 44 469999999999974
No 137
>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger. Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....
Probab=47.78 E-value=14 Score=24.74 Aligned_cols=24 Identities=42% Similarity=0.959 Sum_probs=16.6
Q ss_pred cCcccCcCCCCcc---ccceeeeccCCC
Q psy4949 189 HPIACDACGRANF---VGFRYRCAKCGN 213 (275)
Q Consensus 189 h~~~Cd~C~~~pI---~G~RykC~~C~~ 213 (275)
-+..|+.|+. .| .+.-|+|..|.-
T Consensus 10 ~~~~C~~C~~-~i~g~~~~g~~C~~C~~ 36 (53)
T PF00130_consen 10 KPTYCDVCGK-FIWGLGKQGYRCSWCGL 36 (53)
T ss_dssp STEB-TTSSS-BECSSSSCEEEETTTT-
T ss_pred CCCCCcccCc-ccCCCCCCeEEECCCCC
Confidence 4789999997 77 445678877753
No 138
>PF14445 Prok-RING_2: Prokaryotic RING finger family 2
Probab=45.82 E-value=3.5 Score=28.50 Aligned_cols=32 Identities=25% Similarity=0.812 Sum_probs=22.3
Q ss_pred CcccCcCCC-Cccccc-------eeeeccCC--CCccchhhh
Q psy4949 190 PIACDACGR-ANFVGF-------RYRCAKCG--NFQMCQECF 221 (275)
Q Consensus 190 ~~~Cd~C~~-~pI~G~-------RykC~~C~--~~dLC~~C~ 221 (275)
+..||.|.. .|+.|. ||-|..|- .|-+|..|-
T Consensus 7 ry~CDLCn~~~p~~~LRQCvlCGRWaC~sCW~deYY~CksC~ 48 (57)
T PF14445_consen 7 RYSCDLCNSSHPISELRQCVLCGRWACNSCWQDEYYTCKSCN 48 (57)
T ss_pred hHhHHhhcccCcHHHHHHHhhhchhhhhhhhhhhHhHHHhhh
Confidence 567888875 355554 78888884 477788874
No 139
>KOG1356|consensus
Probab=45.66 E-value=12 Score=39.50 Aligned_cols=97 Identities=16% Similarity=0.318 Sum_probs=58.9
Q ss_pred HHHHHHHhcCCCCcccchhhhhhcccccCCCCc-CcccCcCCCCccccceeeeccCCCCccchhhhhCCc----------
Q psy4949 157 NDFMDTMMSEPGPACLIWLPLLHRLTAVESTSH-PIACDACGRANFVGFRYRCAKCGNFQMCQECFWWGR---------- 225 (275)
Q Consensus 157 ~eFl~~~~~d~~Pq~lvWL~~~~r~~~~~~~~h-~~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~~g~---------- 225 (275)
++|..-++++.++ +.|..-....+-...+.- ...|+.|.. ...-+-|+|.+|.-- +|-.|+-.-+
T Consensus 197 d~~c~~~~se~eA--l~~~~~~~~~a~k~a~~g~~~mC~~C~~-tlfn~hw~C~~C~~~-~Cl~C~r~~~p~~~~~e~a~ 272 (889)
T KOG1356|consen 197 DQFCQLVRSEKEA--LSMQRPDQKVAWKRAVKGIREMCDRCET-TLFNIHWRCPRCGFG-VCLDCYRKWYPRLSKEEVAE 272 (889)
T ss_pred chhhhhhhccchh--hcccCcccccchhhcccCcchhhhhhcc-cccceeEEccccCCe-eeecchhhccccchHhHhhh
Confidence 4677766665433 334444444444445555 689999998 666678999999765 9999986432
Q ss_pred ----------ccCCCCCCCceeeecCCCChhhhhhhhHHHHH
Q psy4949 226 ----------VSGGHNLEHEVKENHPVNKLVTRYANHFAVFR 257 (275)
Q Consensus 226 ----------~~~~H~~~H~m~e~~~~~~~~~~~~~~~~~~~ 257 (275)
-+..|...+-|.--..+.+..-++-+.+-.+|
T Consensus 273 k~~~~~~~C~~~q~h~~~~Lm~Tq~i~~~al~~~~~~~h~~r 314 (889)
T KOG1356|consen 273 KCEFSWLKCNKGQCHALSELMPTQIIPGSALLDLSDRVHAVR 314 (889)
T ss_pred hhhHHHHhcCCccccchhhcccccccchhhhhhHHHHHHHHH
Confidence 13456666666544444444444444444333
No 140
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=43.81 E-value=17 Score=23.21 Aligned_cols=23 Identities=35% Similarity=0.956 Sum_probs=15.0
Q ss_pred CcccCcCCCCc-c-------cc-ceeeeccCC
Q psy4949 190 PIACDACGRAN-F-------VG-FRYRCAKCG 212 (275)
Q Consensus 190 ~~~Cd~C~~~p-I-------~G-~RykC~~C~ 212 (275)
.+.|-.|.... + .| -||+|..|.
T Consensus 5 ~v~CP~C~s~~~v~k~G~~~~G~qryrC~~C~ 36 (36)
T PF03811_consen 5 DVHCPRCQSTEGVKKNGKSPSGHQRYRCKDCR 36 (36)
T ss_pred eeeCCCCCCCCcceeCCCCCCCCEeEecCcCC
Confidence 46677777644 2 22 499999883
No 141
>PLN02222 phosphoinositide phospholipase C 2
Probab=43.58 E-value=45 Score=34.22 Aligned_cols=61 Identities=20% Similarity=0.367 Sum_probs=43.2
Q ss_pred HHHHhchhhccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcC------CCcccHHHHHHHHhcCC
Q psy4949 97 KLRYIFSQLCDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG------NGKVTVNDFMDTMMSEP 167 (275)
Q Consensus 97 Klr~~F~ly~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~------d~~Is~~eFl~~~~~d~ 167 (275)
=++.+|..|++ ++.|+.++|..+|++....+. .+++.+..+|.+ .+.++++.|..+++++.
T Consensus 26 ei~~if~~~~~-~~~mt~~~l~~FL~~~Q~~~~---------~~~~~~~~ii~~~~~~~~~~~~~~~gF~~yL~s~~ 92 (581)
T PLN02222 26 EIKTIFEKYSE-NGVMTVDHLHRFLIDVQKQDK---------ATREDAQSIINSASSLLHRNGLHLDAFFKYLFGDN 92 (581)
T ss_pred HHHHHHHHhcC-CCCcCHHHHHHHHHHhcCCcc---------CCHHHHHHHHHhhhhhhhccCcCHHHHHHHhcCCC
Confidence 46778988975 689999999999998644321 123333343332 46799999999999853
No 142
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.51 E-value=20 Score=28.86 Aligned_cols=29 Identities=38% Similarity=0.864 Sum_probs=22.5
Q ss_pred cccCcCCCCccc------------cceeeeccCCCCccchhhh
Q psy4949 191 IACDACGRANFV------------GFRYRCAKCGNFQMCQECF 221 (275)
Q Consensus 191 ~~Cd~C~~~pI~------------G~RykC~~C~~~dLC~~C~ 221 (275)
..|-+|.. ++. ..||+|.+|.+. .|.+|-
T Consensus 56 ~~C~~C~~-~f~~~~~~~~~~~~~~~~y~C~~C~~~-FC~dCD 96 (112)
T TIGR00622 56 RFCFGCQG-PFPKPPVSPFDELKDSHRYVCAVCKNV-FCVDCD 96 (112)
T ss_pred CcccCcCC-CCCCcccccccccccccceeCCCCCCc-cccccc
Confidence 46999987 433 249999999984 899986
No 143
>PF14206 Cys_rich_CPCC: Cysteine-rich CPCC
Probab=42.72 E-value=11 Score=28.41 Aligned_cols=27 Identities=30% Similarity=0.931 Sum_probs=17.6
Q ss_pred cccCcCCCCccccceeeeccCCC--CccchhhhhCC
Q psy4949 191 IACDACGRANFVGFRYRCAKCGN--FQMCQECFWWG 224 (275)
Q Consensus 191 ~~Cd~C~~~pI~G~RykC~~C~~--~dLC~~C~~~g 224 (275)
+.|--|+...+... .+ |++|..|||..
T Consensus 2 ~~CPCCg~~Tl~~~-------~~~~ydIC~VC~WEd 30 (78)
T PF14206_consen 2 YPCPCCGYYTLEER-------GEGTYDICPVCFWED 30 (78)
T ss_pred ccCCCCCcEEeccC-------CCcCceECCCCCccc
Confidence 35666776333222 33 99999999974
No 144
>PLN02223 phosphoinositide phospholipase C
Probab=41.96 E-value=36 Score=34.56 Aligned_cols=70 Identities=9% Similarity=0.078 Sum_probs=46.9
Q ss_pred hhhHHHHhchhhccCCCceeHHHHHHHHHHHHhchhhccCCC-CCCCchHHHhhhhcCC---------CcccHHHHHHHH
Q psy4949 94 LMDKLRYIFSQLCDCNGHLVAWKFNEYLQDVLAIPAAVLESP-SFSYTDTLAQEIFSGN---------GKVTVNDFMDTM 163 (275)
Q Consensus 94 l~dKlr~~F~ly~D~nG~i~~~el~~~L~~i~~i~~~~gE~~-~f~~~e~~v~~cF~~d---------~~Is~~eFl~~~ 163 (275)
.-+-.+-+|..|++++|.|+.+.+..+|.=+.. .-||.. +....+..++++++.. +.++++.|..++
T Consensus 14 ~p~~v~~~f~~~~~~~~~m~~~~l~~fl~~l~~---~q~e~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~l~~~~f~~~L 90 (537)
T PLN02223 14 QPDLILNFFGNEFHGYDDDMPELLPRFIELLDT---EKDEDGAGLNAAEKIAAELKRRKCDILAFRNLRCLELDHLNEFL 90 (537)
T ss_pred CcHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHH---hcccccCCHHHHHHHHHHHHhhcccchhhhhccccCHHHHHHHh
Confidence 345568899999999999999999888832211 123321 1112245566666642 569999999999
Q ss_pred hcC
Q psy4949 164 MSE 166 (275)
Q Consensus 164 ~~d 166 (275)
.++
T Consensus 91 ~s~ 93 (537)
T PLN02223 91 FST 93 (537)
T ss_pred cCc
Confidence 984
No 145
>KOG2807|consensus
Probab=41.93 E-value=11 Score=35.65 Aligned_cols=30 Identities=37% Similarity=0.796 Sum_probs=24.7
Q ss_pred cccCcCCCCccccceeeeccCCCCccchhhh
Q psy4949 191 IACDACGRANFVGFRYRCAKCGNFQMCQECF 221 (275)
Q Consensus 191 ~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~ 221 (275)
..|-+|....-.+.||+|-.|.++ .|..|-
T Consensus 331 ~~Cf~C~~~~~~~~~y~C~~Ck~~-FCldCD 360 (378)
T KOG2807|consen 331 RFCFACQGELLSSGRYRCESCKNV-FCLDCD 360 (378)
T ss_pred cceeeeccccCCCCcEEchhccce-eeccch
Confidence 348888666778889999999996 898885
No 146
>KOG2557|consensus
Probab=41.41 E-value=93 Score=30.23 Aligned_cols=55 Identities=20% Similarity=0.225 Sum_probs=49.3
Q ss_pred CCeeehHHHHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHHHHHHHHHHHhch
Q psy4949 74 LGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIP 128 (275)
Q Consensus 74 ~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~ 128 (275)
+-.+.+..+..+-++.-.|+..++-+-+.... .++||..++.++.+++..+++..
T Consensus 72 ~~~~~l~k~~~~~~~~~~gt~dq~a~mL~~~~~~sgn~~~~~~q~eQ~~~~vlks~ 127 (427)
T KOG2557|consen 72 DDKMTLEKLVIAKATYEKGTDDQIAEMLYQTLDVNGNGVLSRSQLEQFLVVVLKSV 127 (427)
T ss_pred CccchHHHHhhHHhhhccCcccHHHHHHHHHHhhccccccchhHHHHHHHHHhhhe
Confidence 34788889999999999999999999999887 79999999999999999998774
No 147
>PF05042 Caleosin: Caleosin related protein; InterPro: IPR007736 This family contains plant proteins related to caleosin. Caleosins contain calcium-binding domains and have an oleosin-like association with lipid bodies. Caleosins are present at relatively low levels and are mainly bound to microsomal membrane fractions at the early stages of seed development. As the seeds mature, overall levels of caleosins increased dramatically and they were associated almost exclusively with storage lipid bodies []. The calcium binding domain is probably related to the calcium-binding EF-hands motif IPR002048 from INTERPRO.
Probab=40.51 E-value=75 Score=27.51 Aligned_cols=57 Identities=12% Similarity=0.129 Sum_probs=43.8
Q ss_pred HHHHHHhhcCCCCCeeehHHHHHHHHHhc-----CCChhhHHHH--hchhhccCCCceeHHHHH
Q psy4949 62 LNWLLSAYSVESLGRIRVFSIKVALATMC-----SGKLMDKLRY--IFSQLCDCNGHLVAWKFN 118 (275)
Q Consensus 62 ~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc-----~G~l~dKlr~--~F~ly~D~nG~i~~~el~ 118 (275)
.+-+|+-|+..+.+.++..|+...+.-=. -|.+..++.| +|.|..|.+|.+.|+.++
T Consensus 98 Fe~iF~kya~~~~d~LT~~E~~~m~~~nr~~~D~~GW~a~~~EW~~~y~L~~d~dG~l~Ke~iR 161 (174)
T PF05042_consen 98 FEEIFSKYAKTGPDALTLRELWRMLKGNRNANDPFGWFAAFFEWGALYILAKDKDGFLSKEDIR 161 (174)
T ss_pred HHHHHHHhCCCCCCCcCHHHHHHHHHhccccCCcchhhhhhhHHHHHHHHHcCcCCcEeHHHHh
Confidence 45688999998889999999987776422 2566777777 566667999999999864
No 148
>KOG4064|consensus
Probab=39.59 E-value=45 Score=28.43 Aligned_cols=97 Identities=16% Similarity=0.205 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhch
Q psy4949 24 SDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFS 103 (275)
Q Consensus 24 ~~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ 103 (275)
..++.++|...|+.+|++ ..||+++...+++. |.+|. +.-+-|. .-|.|+|.=.
T Consensus 10 ~~~sl~dLv~~lh~~F~~--------~~vnveeV~~lM~s-----YkSnp---~EWr~yA----------kFD~y~YTRN 63 (196)
T KOG4064|consen 10 RMISLVDLVVQLHEIFQQ--------KLVNVEEVMKLMAS-----YKSNP---NEWRRYA----------KFDMYKYTRN 63 (196)
T ss_pred hhhhHHHHHHHHHHHHHh--------cccCHHHHHHHHHH-----hhcCH---HHHHHHH----------hhhHHHHhhh
Confidence 457889999999999966 46899998666553 43332 1111111 1255667767
Q ss_pred hhccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHH-hhhhcC--CCcccHHHH
Q psy4949 104 QLCDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLA-QEIFSG--NGKVTVNDF 159 (275)
Q Consensus 104 ly~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v-~~cF~~--d~~Is~~eF 159 (275)
|..-|||.-. -|.-..||+-.-+ ...++ ..||-+ +|.+++.-|
T Consensus 64 LVD~GNGKfN------------LmILCWGeGhgSS-vHDHtdsHCF~KmL~G~L~Et~y 109 (196)
T KOG4064|consen 64 LVDVGNGKFN------------LMILCWGEGHGSS-VHDHTDSHCFVKMLDGELTETKY 109 (196)
T ss_pred hhhcCCCeEe------------EEEEEecCCCCcc-ccccccchhHHHHhcCcchhhcc
Confidence 7766777421 1123456652211 12333 347776 666665543
No 149
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=39.21 E-value=26 Score=21.55 Aligned_cols=24 Identities=25% Similarity=0.552 Sum_probs=17.3
Q ss_pred CcccCcCCC---CccccceeeeccCCC
Q psy4949 190 PIACDACGR---ANFVGFRYRCAKCGN 213 (275)
Q Consensus 190 ~~~Cd~C~~---~pI~G~RykC~~C~~ 213 (275)
++.|.+|+. .|..-..+||..|.-
T Consensus 1 q~~C~~C~t~L~yP~gA~~vrCs~C~~ 27 (31)
T TIGR01053 1 QVVCGGCRTLLMYPRGASSVRCALCQT 27 (31)
T ss_pred CcCcCCCCcEeecCCCCCeEECCCCCe
Confidence 367888876 566666788888864
No 150
>PF01756 ACOX: Acyl-CoA oxidase; InterPro: IPR002655 Acyl-CoA oxidase (ACO) acts on CoA derivatives of fatty acids with chain lengths from 8 to 18. It catalyses the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids []. Acyl-CoA oxidase is a homodimer and the polypeptide chain of the subunit is folded into the N-terminal alpha-domain, beta-domain, and C-terminal alpha-domain []. Functional differences between the peroxisomal acyl-CoA oxidases and the mitochondrial acyl-CoA dehydrogenases are attributed to structural differences in the FAD environments []. Experimental data indicate that, in the pumpkin, the expression pattern of ACOX is very similar to that of the glyoxysomal enzyme 3-ketoacyl-CoA thiolase []. In humans, defects in ACOX1 are the cause of pseudoneonatal adrenoleukodystrophy, also known as peroxisomal acyl-CoA oxidase deficiency. Pseudo-NALD is a peroxisomal single-enzyme disorder. Clinical features include mental retardation, leukodystrophy, seizures, mild hepatomegaly and hearing deficit. Pseudo-NALD is characterised by increased plasma levels of very-long chain fatty acids due to a decrease in, or absence of, peroxisome acyl-CoA oxidase activity, despite the peroxisomes being intact and functioning. This entry represents the Acyl-CoA oxidase C-terminal.; GO: 0003997 acyl-CoA oxidase activity, 0006635 fatty acid beta-oxidation, 0055114 oxidation-reduction process, 0005777 peroxisome; PDB: 2FON_A 1IS2_B 2DDH_A 1W07_B.
Probab=39.19 E-value=31 Score=29.47 Aligned_cols=60 Identities=15% Similarity=0.213 Sum_probs=35.5
Q ss_pred CCceeHHHHHHHHHHHHhch-----hhccCCCCCCCchHHHhhhhcC-CCcccHHHHHHHHhcCCCC
Q psy4949 109 NGHLVAWKFNEYLQDVLAIP-----AAVLESPSFSYTDTLAQEIFSG-NGKVTVNDFMDTMMSEPGP 169 (275)
Q Consensus 109 nG~i~~~el~~~L~~i~~i~-----~~~gE~~~f~~~e~~v~~cF~~-d~~Is~~eFl~~~~~d~~P 169 (275)
.|.|+.+++..+-..+.++. .+++=..+|+.++....+.... ||.+ .+...+|+++.|.+
T Consensus 103 ~g~ls~~~~~~l~~~i~~l~~~lrp~av~LVDAF~~~D~~L~S~iG~~DG~v-Ye~l~~~a~~~~~n 168 (187)
T PF01756_consen 103 HGYLSPEQIKALRKAIEELCAELRPNAVALVDAFDFPDFFLNSPIGRYDGDV-YEALFEWAKKSPLN 168 (187)
T ss_dssp TTSS-HHHHHHHHHHHHHHHHHHGGGHHHHHHTT---HHHHT-STT-TT--H-HHHHHHHHHHSGGG
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHhHHHHHHHhcCCCHHHHcChhccccchH-HHHHHHHHHHCCCC
Confidence 68899888876666555553 3444345677777777776665 7777 78899999987543
No 151
>KOG0046|consensus
Probab=37.79 E-value=96 Score=31.55 Aligned_cols=73 Identities=16% Similarity=0.200 Sum_probs=49.1
Q ss_pred chHHHHHHHHHHcCCCCcCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcCCCCCeeehHHH
Q psy4949 3 IDIWNVIEAFRENGLNAIELQSDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSI 82 (275)
Q Consensus 3 vd~~~~~e~f~~~~l~~~~~~~~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef 82 (275)
+++-++.|.|.... + ...-+++.+ |.+.|.+... |+ +....++.. -++...++|.+|+|+|.+|
T Consensus 16 ~El~~l~~kF~~~d-~---~~G~v~~~~----l~~~f~k~~~--~~-g~~~~eei~-----~~l~~~~~~~~g~v~fe~f 79 (627)
T KOG0046|consen 16 EELRELKEKFNKLD-D---QKGYVTVYE----LPDAFKKAKL--PL-GYFVREEIK-----EILGEVGVDADGRVEFEEF 79 (627)
T ss_pred HHHHHHHHHHHhhc-C---CCCeeehHH----hHHHHHHhcc--cc-cchhHHHHH-----HHHhccCCCcCCccCHHHH
Confidence 45667788887766 3 356688888 6667766543 44 344444443 3456789999999999999
Q ss_pred HH-HHHHhcC
Q psy4949 83 KV-ALATMCS 91 (275)
Q Consensus 83 ~~-aLs~Lc~ 91 (275)
.. .+.+.++
T Consensus 80 ~~~~~~l~s~ 89 (627)
T KOG0046|consen 80 VGIFLNLKSK 89 (627)
T ss_pred HHHHHhhhhh
Confidence 76 5555554
No 152
>KOG1265|consensus
Probab=37.74 E-value=1.4e+02 Score=32.41 Aligned_cols=111 Identities=16% Similarity=0.221 Sum_probs=61.8
Q ss_pred HHHHHHHhcCCChhhHHHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCC-chHHHhhh---------hcC
Q psy4949 82 IKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSY-TDTLAQEI---------FSG 150 (275)
Q Consensus 82 f~~aLs~Lc~G~l~dKlr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~-~e~~v~~c---------F~~ 150 (275)
|..-|.-||.- -.+..+|.-+ .|..-++|+.+|..+|..-..=|+ +.|.. |.. ....+..+ +..
T Consensus 210 f~~~l~klcpR---~eie~iF~ki~~~~kpylT~~ql~dfln~~QrDpR-LNeil-fp~~~~~r~~~liekyEp~~~~a~ 284 (1189)
T KOG1265|consen 210 FYRLLNKLCPR---PEIEEIFRKISGKKKPYLTKEQLVDFLNKKQRDPR-LNEIL-FPPADPRRIQSLIEKYEPNSDNAE 284 (1189)
T ss_pred HHHHHHhcCCc---hhHHHHHHHhccCCCccccHHHHHHHHhhhccCcc-hhhhh-cCCCCHHHHHHHHHHcCCchhhhh
Confidence 34444444431 2234578878 466679999999999975433332 33321 222 12233222 223
Q ss_pred CCcccHHHHHHHHhcCCCCcc-cchhhhhhcccccC-----CCCcCcccCcCC
Q psy4949 151 NGKVTVNDFMDTMMSEPGPAC-LIWLPLLHRLTAVE-----STSHPIACDACG 197 (275)
Q Consensus 151 d~~Is~~eFl~~~~~d~~Pq~-lvWL~~~~r~~~~~-----~~~h~~~Cd~C~ 197 (275)
.|++|.+-|+.+++.|+.|-. +-=|.+.+-|...= |..|.+.|.+=+
T Consensus 285 ~gqms~dgf~ryl~gdEn~i~a~~~l~l~~dM~qPl~hYFINSSHNTYlTg~Q 337 (1189)
T KOG1265|consen 285 KGQMSTDGFVRYLMGDENAIVALDKLDLVTDMDQPLSHYFINSSHNTYLTGGQ 337 (1189)
T ss_pred ccccchhhhHHHhhCCccccccHHHHHhhhhhccchhhhhccccccceeeccc
Confidence 689999999999998765532 33444444333211 456777776533
No 153
>PF05517 p25-alpha: p25-alpha ; InterPro: IPR008907 This family encodes a 25 kDa protein that is phosphorylated by a Ser/Thr-Pro kinase []. It has been described as a brain specific protein, but it is found in Tetrahymena thermophila.; PDB: 1WLM_A 1PUL_A 2JRF_A.
Probab=37.09 E-value=70 Score=26.77 Aligned_cols=59 Identities=22% Similarity=0.316 Sum_probs=41.6
Q ss_pred HHHhchhh----ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcC-----CCcccHHHHHHHHh
Q psy4949 98 LRYIFSQL----CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG-----NGKVTVNDFMDTMM 164 (275)
Q Consensus 98 lr~~F~ly----~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~-----d~~Is~~eFl~~~~ 164 (275)
|+-+|.-| ..+...|+-..+..+++++ .|.. -.-+...++-+|.+ ...|+.++|++.+.
T Consensus 1 L~~~F~~f~~fG~~~~~~m~~~~F~Kl~kD~-~i~d-------~k~t~tdvDiiF~Kvk~k~~~~I~f~~F~~aL~ 68 (154)
T PF05517_consen 1 LEAVFKAFASFGKKNGTEMDSKNFAKLCKDC-GIID-------KKLTSTDVDIIFSKVKAKGARKITFEQFLEALA 68 (154)
T ss_dssp HHHHHHHHHCSSTSTSSEEEHHHHHHHHHHT-SS---------SSS-HHHHHHHHHHHT-SS-SEEEHHHHHHHHH
T ss_pred CHHHHHHHHHhcCCccccccHHHHHHHHHHc-CCCC-------CCCchHHHHHHHHHhhcCCCcccCHHHHHHHHH
Confidence 45667777 3556799999999999996 4421 11246788888887 23699999999774
No 154
>smart00396 ZnF_UBR1 Putative zinc finger in N-recognin, a recognition component of the N-end rule pathway. Domain is involved in recognition of N-end rule substrates in yeast Ubr1p
Probab=36.93 E-value=39 Score=24.61 Aligned_cols=30 Identities=33% Similarity=0.824 Sum_probs=19.6
Q ss_pred eeeccCCC---CccchhhhhCCcccCCCCCCCceeeec
Q psy4949 206 YRCAKCGN---FQMCQECFWWGRVSGGHNLEHEVKENH 240 (275)
Q Consensus 206 ykC~~C~~---~dLC~~C~~~g~~~~~H~~~H~m~e~~ 240 (275)
|+|..|.- .-+|..||.. ..| .+|.+.-+.
T Consensus 14 y~C~tC~~~~~~~iC~~Cf~~----~~H-~gH~~~~~~ 46 (71)
T smart00396 14 YRCKTCGLDPTCVLCSDCFRS----NCH-KGHDYSLKT 46 (71)
T ss_pred EECcCCCCCCCEeEChHHCCC----CCC-CCCCEEEEE
Confidence 89999863 4589999953 344 355554443
No 155
>PTZ00463 histone H2B; Provisional
Probab=35.14 E-value=77 Score=25.67 Aligned_cols=62 Identities=11% Similarity=0.202 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcC-----------CCCCeeehHHHHHHHHHhcCCChh
Q psy4949 32 ETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSV-----------ESLGRIRVFSIKVALATMCSGKLM 95 (275)
Q Consensus 32 ~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~-----------~~~G~I~~~ef~~aLs~Lc~G~l~ 95 (275)
|.--.-||+-+++-.|.++. . ..+..++.+++-.+|++ +...+|+-+|+..|.-+++.|.|.
T Consensus 28 esy~~YI~KVLKqVhPd~gI-S-~kaM~ImnSfvnDifErIA~EAs~La~~nkr~TltsrEIQtAvrLlLpGELa 100 (117)
T PTZ00463 28 DSYGLYIFKVLKQVHPDTGI-S-RKSMNIMNSFLVDTFEKIATEASRLCKYTRRDTLSSREIQTAIRLVLPGELA 100 (117)
T ss_pred chHHHHHHHHHHhhCCCCCc-c-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHhhcccHHHH
Confidence 33344577777777787543 2 23444555554444432 466677777777777777777654
No 156
>PLN00158 histone H2B; Provisional
Probab=34.94 E-value=76 Score=25.67 Aligned_cols=60 Identities=12% Similarity=0.180 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhc-----------CCCCCeeehHHHHHHHHHhcCCChh
Q psy4949 34 LLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYS-----------VESLGRIRVFSIKVALATMCSGKLM 95 (275)
Q Consensus 34 ~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD-----------~~~~G~I~~~ef~~aLs~Lc~G~l~ 95 (275)
--.-||+-+++-+|.++. . ..+..++.+++-.+|+ -++..+|+.+|+..|.-++..|.|.
T Consensus 29 y~~YI~kVLKQVhPd~gI-S-~kaM~ImnSfvnDiferIA~EAs~La~~nkr~TltsrEIqtAvrLvLpgELa 99 (116)
T PLN00158 29 YKIYIYKVLKQVHPDTGI-S-SKAMSIMNSFINDIFEKIATEAGKLARYNKKPTVTSREIQTAVRLILPGELA 99 (116)
T ss_pred HHHHHHHHHHHhCCCCCc-c-HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCHHHHHHHHHHhccHHHH
Confidence 334577777777787543 2 2233444444444333 2566778888888888877777653
No 157
>KOG4578|consensus
Probab=33.94 E-value=31 Score=32.93 Aligned_cols=59 Identities=15% Similarity=0.349 Sum_probs=38.9
Q ss_pred HHHhchhh-ccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhc-----CCCcccHHHHHHHHhcC
Q psy4949 98 LRYIFSQL-CDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFS-----GNGKVTVNDFMDTMMSE 166 (275)
Q Consensus 98 lr~~F~ly-~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~-----~d~~Is~~eFl~~~~~d 166 (275)
.+|.|.++ .++|+.|.|.|+..|=+-+.+- .....-++..|. +|.+||++|++..+...
T Consensus 335 v~w~F~qLdkN~nn~i~rrEwKpFK~~l~k~----------s~~rkC~rk~~~yCDlNkDKkISl~Ew~~CL~~~ 399 (421)
T KOG4578|consen 335 VHWYFNQLDKNSNNDIERREWKPFKRVLLKK----------SKPRKCSRKFFKYCDLNKDKKISLDEWRGCLGVE 399 (421)
T ss_pred eeeeeeeecccccCccchhhcchHHHHHHhh----------ccHHHHhhhcchhcccCCCceecHHHHhhhhccc
Confidence 48999999 6899999999986554432111 112233344343 37899999998876543
No 158
>PF08726 EFhand_Ca_insen: Ca2+ insensitive EF hand; InterPro: IPR014837 EF hands are helix-loop-helix binding motifs involved in the regulation of many cellular processes. EF hands usually bind to Ca2+ ions, which cause a major conformational change that allows the protein to interact with its designated targets. This protein corresponds to an EF hand which has partially or entirely lost its calcium-binding properties. The calcium insensitive EF hand is still able to mediate protein-protein recognition []. ; PDB: 1H8B_A 1SJJ_B.
Probab=33.53 E-value=38 Score=24.78 Aligned_cols=27 Identities=11% Similarity=0.140 Sum_probs=23.5
Q ss_pred hhHHHHhchhhccCCCceeHHHHHHHH
Q psy4949 95 MDKLRYIFSQLCDCNGHLVAWKFNEYL 121 (275)
Q Consensus 95 ~dKlr~~F~ly~D~nG~i~~~el~~~L 121 (275)
.|....+|+.++++.++||..+|..-|
T Consensus 5 ~eqv~~aFr~lA~~KpyVT~~dLr~~l 31 (69)
T PF08726_consen 5 AEQVEEAFRALAGGKPYVTEEDLRRSL 31 (69)
T ss_dssp CHHHHHHHHHHCTSSSCEEHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHc
Confidence 578889999999999999999997654
No 159
>cd00029 C1 Protein kinase C conserved region 1 (C1) . Cysteine-rich zinc binding domain. Some members of this domain family bind phorbol esters and diacylglycerol, some are reported to bind RasGTP. May occur in tandem arrangement. Diacylglycerol (DAG) is a second messenger, released by activation of Phospholipase D. Phorbol Esters (PE) can act as analogues of DAG and mimic its downstream effects in, for example, tumor promotion. Protein Kinases C are activated by DAG/PE, this activation is mediated by their N-terminal conserved region (C1). DAG/PE binding may be phospholipid dependent. C1 domains may also mediate DAG/PE signals in chimaerins (a family of Rac GTPase activating proteins), RasGRPs (exchange factors for Ras/Rap1), and Munc13 isoforms (scaffolding proteins involved in exocytosis).
Probab=32.43 E-value=23 Score=22.98 Aligned_cols=22 Identities=36% Similarity=0.919 Sum_probs=16.7
Q ss_pred CcccCcCCCCcccc---ceeeeccCC
Q psy4949 190 PIACDACGRANFVG---FRYRCAKCG 212 (275)
Q Consensus 190 ~~~Cd~C~~~pI~G---~RykC~~C~ 212 (275)
+..|+.|.. .|.| .-|+|..|.
T Consensus 11 ~~~C~~C~~-~i~~~~~~~~~C~~C~ 35 (50)
T cd00029 11 PTFCDVCRK-SIWGLFKQGLRCSWCK 35 (50)
T ss_pred CCChhhcch-hhhccccceeEcCCCC
Confidence 678999997 7777 567777763
No 160
>smart00427 H2B Histone H2B.
Probab=31.44 E-value=89 Score=24.10 Aligned_cols=24 Identities=17% Similarity=0.252 Sum_probs=19.2
Q ss_pred CCCCeeehHHHHHHHHHhcCCChh
Q psy4949 72 ESLGRIRVFSIKVALATMCSGKLM 95 (275)
Q Consensus 72 ~~~G~I~~~ef~~aLs~Lc~G~l~ 95 (275)
++..+|+-+|...|.-++..|.|.
T Consensus 50 nkr~TltsreIqtAvrl~LpgeLa 73 (89)
T smart00427 50 NKKSTLSSREIQTAVRLILPGELA 73 (89)
T ss_pred cCCCcCCHHHHHHHHHHHccHHHH
Confidence 567788888888888888887764
No 161
>PF12872 OST-HTH: OST-HTH/LOTUS domain; PDB: 2KPM_A 3S93_B 3RCO_A 2KZV_A.
Probab=30.01 E-value=1.3e+02 Score=21.10 Aligned_cols=36 Identities=11% Similarity=0.050 Sum_probs=25.4
Q ss_pred CccChHHHHHHHHHHHHHhhcCCCCCeeehHHHHHHH
Q psy4949 50 QQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSIKVAL 86 (275)
Q Consensus 50 ~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~~aL 86 (275)
+-++.......+.+.. ..||...-|.-++.+|+.++
T Consensus 22 g~v~ls~l~~~~~~~~-~~f~~~~yG~~~l~~ll~~~ 57 (74)
T PF12872_consen 22 GWVSLSQLGQEYKKKY-PDFDPRDYGFSSLSELLESL 57 (74)
T ss_dssp SSEEHHHHHHHHHHHH-TT--TCCTTSSSHHHHHHT-
T ss_pred ceEEHHHHHHHHHHHC-CCCCccccCCCcHHHHHHhC
Confidence 4577777767776666 88999999999999988643
No 162
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=29.26 E-value=75 Score=19.26 Aligned_cols=29 Identities=14% Similarity=0.208 Sum_probs=20.9
Q ss_pred hhHHHHhchhhccCCCceeHHHHHHHHHHHH
Q psy4949 95 MDKLRYIFSQLCDCNGHLVAWKFNEYLQDVL 125 (275)
Q Consensus 95 ~dKlr~~F~ly~D~nG~i~~~el~~~L~~i~ 125 (275)
.++++-+=.+|. +|.||.+|+...-+.++
T Consensus 2 ~~~L~~L~~l~~--~G~IseeEy~~~k~~ll 30 (31)
T PF09851_consen 2 EDRLEKLKELYD--KGEISEEEYEQKKARLL 30 (31)
T ss_pred hHHHHHHHHHHH--cCCCCHHHHHHHHHHHh
Confidence 456666666774 78899999987766553
No 163
>PLN02230 phosphoinositide phospholipase C 4
Probab=29.24 E-value=71 Score=32.91 Aligned_cols=69 Identities=14% Similarity=0.294 Sum_probs=44.2
Q ss_pred hhhHHHHhchhhccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhhcC--------CCcccHHHHHHHHhc
Q psy4949 94 LMDKLRYIFSQLCDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG--------NGKVTVNDFMDTMMS 165 (275)
Q Consensus 94 l~dKlr~~F~ly~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF~~--------d~~Is~~eFl~~~~~ 165 (275)
+-.=.+.+|.-|+++++.||.++|..+|++....+... +....+..++.++.. .+.++++.|..++++
T Consensus 27 p~~ei~~lf~~~s~~~~~mt~~~l~~FL~~~Q~~~~~~----~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~~yL~s 102 (598)
T PLN02230 27 PVADVRDLFEKYADGDAHMSPEQLQKLMAEEGGGEGET----SLEEAERIVDEVLRRKHHIAKFTRRNLTLDDFNYYLFS 102 (598)
T ss_pred CcHHHHHHHHHHhCCCCccCHHHHHHHHHHhCCCcccC----CHHHHHHHHHHHHhhccccccccccccCHHHHHHHHcC
Confidence 33456889999987779999999999999863232100 000112233333222 246999999999987
Q ss_pred C
Q psy4949 166 E 166 (275)
Q Consensus 166 d 166 (275)
.
T Consensus 103 ~ 103 (598)
T PLN02230 103 T 103 (598)
T ss_pred c
Confidence 3
No 164
>KOG1029|consensus
Probab=29.21 E-value=1.6e+02 Score=31.60 Aligned_cols=51 Identities=10% Similarity=0.152 Sum_probs=37.4
Q ss_pred HHHHHhhcCCCCCccChHHHHHHH---------HHHHHHhhcCCCCCeeehHHHHHHHHH
Q psy4949 38 LYHNLNKRLPVSQQVHVEVLSGLL---------LNWLLSAYSVESLGRIRVFSIKVALAT 88 (275)
Q Consensus 38 lY~~~~k~~P~~~~v~~~~~~~l~---------~~~lf~~fD~~~~G~I~~~ef~~aLs~ 88 (275)
-+.+|-.--|..+.|+-+.+-.++ +.-+++.=|.|.||++|..||-+|+-+
T Consensus 18 ~~~qF~~Lkp~~gfitg~qArnfflqS~LP~~VLaqIWALsDldkDGrmdi~EfSIAmkL 77 (1118)
T KOG1029|consen 18 HDAQFGQLKPGQGFITGDQARNFFLQSGLPTPVLAQIWALSDLDKDGRMDIREFSIAMKL 77 (1118)
T ss_pred HHHHHhccCCCCCccchHhhhhhHHhcCCChHHHHHHHHhhhcCccccchHHHHHHHHHH
Confidence 334444445777777777766553 446889999999999999999888654
No 165
>PF04699 P16-Arc: ARP2/3 complex 16 kDa subunit (p16-Arc); InterPro: IPR006789 The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. The precise function of p16-Arc is currently unknown. Its structure consists of a single domain containing a bundle of seven alpha helices [, ].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_G 1TYQ_G 1U2V_G 2P9U_G 2P9L_G 1K8K_G 3DXM_G 2P9N_G 3DXK_G 2P9I_G ....
Probab=29.09 E-value=43 Score=28.31 Aligned_cols=47 Identities=21% Similarity=0.489 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcCCCCCee
Q psy4949 24 SDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVESLGRI 77 (275)
Q Consensus 24 ~~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~~~~G~I 77 (275)
..|+..++-.++.-||++|.. |+. ..+...+++|--.+++..|.|.|
T Consensus 96 ~~L~~~~~D~LMKYiYkg~~~--~~~-----~s~~~~LL~WheK~~~~~G~G~I 142 (152)
T PF04699_consen 96 KSLDSDQQDILMKYIYKGMES--PSE-----NSSGGVLLSWHEKLVEVAGVGSI 142 (152)
T ss_dssp CCS-HHHHHHHHHHHHHHTTS----T-----THH-CHHHHHHHHHHHCCHCHHH
T ss_pred HhCCHHHHhHHHHHHHHhccC--ccC-----ccHHHHHHHHHHHHHHHcCCCcE
Confidence 567888999999999999874 441 11236788899999988888865
No 166
>smart00109 C1 Protein kinase C conserved region 1 (C1) domains (Cysteine-rich domains). Some bind phorbol esters and diacylglycerol. Some bind RasGTP. Zinc-binding domains.
Probab=28.84 E-value=28 Score=22.32 Aligned_cols=21 Identities=33% Similarity=0.882 Sum_probs=15.7
Q ss_pred CcccCcCCCCccccc--eeeeccC
Q psy4949 190 PIACDACGRANFVGF--RYRCAKC 211 (275)
Q Consensus 190 ~~~Cd~C~~~pI~G~--RykC~~C 211 (275)
...|+.|+. +|.|. -|+|..|
T Consensus 11 ~~~C~~C~~-~i~~~~~~~~C~~C 33 (49)
T smart00109 11 PTKCCVCRK-SIWGSFQGLRCSWC 33 (49)
T ss_pred CCCcccccc-ccCcCCCCcCCCCC
Confidence 678999997 77774 4666665
No 167
>PF00404 Dockerin_1: Dockerin type I repeat; InterPro: IPR018242 Gram-positive, thermophilic anaerobes such as Clostridium thermocellum or Clostridium cellulolyticum secretes a highly active and thermostable cellulase complex (cellulosome) responsible for the degradation of crystalline cellulose [, ]. The cellulosome contains at least 30 polypeptides, the majority of the enzymes are endoglucanases (3.2.1.4 from EC), but there are also some xylanases (3.2.1.8 from EC), beta-glucosidases (3.2.1.21 from EC) and endo-beta-1,3-1,4-glucanases (3.2.1.73 from EC). Complete sequence data for many of these enzymes has been obtained. A majority of these proteins contain a highly conserved type I dockerin domain of about 65 to 70 residues, which is generally (but not always) located in the C terminus. The dockerin domain is the binding partner of the cohesin domain (see IPR002102 from INTERPRO). The cohesin-dockerin interaction is the crucial interaction for complex formation in the cellulosome []. The dockerin domain contains a tandem repeat of two calcium-binding loop-helix motifs (distinct from EF-hand Ca-binding motifs). These motifs are about 24 amino acids in length. This entry represents these repeated Ca-binding motifs.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3P0D_J 1OHZ_B 2CCL_B 1DAV_A 1DAQ_A 2VN5_B 2VN6_B.
Probab=28.77 E-value=35 Score=19.14 Aligned_cols=15 Identities=13% Similarity=0.439 Sum_probs=9.5
Q ss_pred cCCCCCeeehHHHHH
Q psy4949 70 SVESLGRIRVFSIKV 84 (275)
Q Consensus 70 D~~~~G~I~~~ef~~ 84 (275)
|-|+||+|+...+..
T Consensus 1 DvN~DG~vna~D~~~ 15 (21)
T PF00404_consen 1 DVNGDGKVNAIDLAL 15 (21)
T ss_dssp -TTSSSSSSHHHHHH
T ss_pred CCCCCCcCCHHHHHH
Confidence 567777777766643
No 168
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=28.38 E-value=23 Score=23.77 Aligned_cols=37 Identities=19% Similarity=0.442 Sum_probs=25.4
Q ss_pred ccCCCCc--CcccCcCCCCccccceeeeccCCCCccchhhhh
Q psy4949 183 AVESTSH--PIACDACGRANFVGFRYRCAKCGNFQMCQECFW 222 (275)
Q Consensus 183 ~~~~~~h--~~~Cd~C~~~pI~G~RykC~~C~~~dLC~~C~~ 222 (275)
+....+| =.+|..|+. ++.+.. ...=.+--+|..||.
T Consensus 17 ~~~~~~H~~Cf~C~~C~~-~l~~~~--~~~~~~~~~C~~c~~ 55 (58)
T PF00412_consen 17 AMGKFWHPECFKCSKCGK-PLNDGD--FYEKDGKPYCKDCYQ 55 (58)
T ss_dssp ETTEEEETTTSBETTTTC-BTTTSS--EEEETTEEEEHHHHH
T ss_pred eCCcEEEccccccCCCCC-ccCCCe--eEeECCEEECHHHHh
Confidence 4456788 399999997 777765 333334556999885
No 169
>PF12760 Zn_Tnp_IS1595: Transposase zinc-ribbon domain; InterPro: IPR024442 This zinc binding domain is found in a range of transposase proteins such as ISSPO8, ISSOD11, ISRSSP2 etc. It may be a zinc-binding beta ribbon domain that could bind DNA.
Probab=27.70 E-value=42 Score=22.13 Aligned_cols=23 Identities=35% Similarity=0.839 Sum_probs=17.3
Q ss_pred CcccCcCCC---Ccccc-ceeeeccCC
Q psy4949 190 PIACDACGR---ANFVG-FRYRCAKCG 212 (275)
Q Consensus 190 ~~~Cd~C~~---~pI~G-~RykC~~C~ 212 (275)
++.|.-|+. ..|.+ .+|+|..|.
T Consensus 18 g~~CP~Cg~~~~~~~~~~~~~~C~~C~ 44 (46)
T PF12760_consen 18 GFVCPHCGSTKHYRLKTRGRYRCKACR 44 (46)
T ss_pred CCCCCCCCCeeeEEeCCCCeEECCCCC
Confidence 577888886 35555 789999885
No 170
>KOG0046|consensus
Probab=27.63 E-value=1.5e+02 Score=30.20 Aligned_cols=59 Identities=10% Similarity=0.116 Sum_probs=41.2
Q ss_pred HHHHHhhcCCCCCeeehHHHHHHHHHhcCCC--h-hhHH-HHhchhhccCCCceeHHHHHHHHH
Q psy4949 63 NWLLSAYSVESLGRIRVFSIKVALATMCSGK--L-MDKL-RYIFSQLCDCNGHLVAWKFNEYLQ 122 (275)
Q Consensus 63 ~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~--l-~dKl-r~~F~ly~D~nG~i~~~el~~~L~ 122 (275)
+--|+..| +++|+|++.++.-++.-..... . .|-. ..+=..+.|.+|.++-++|..+..
T Consensus 22 ~~kF~~~d-~~~G~v~~~~l~~~f~k~~~~~g~~~~eei~~~l~~~~~~~~g~v~fe~f~~~~~ 84 (627)
T KOG0046|consen 22 KEKFNKLD-DQKGYVTVYELPDAFKKAKLPLGYFVREEIKEILGEVGVDADGRVEFEEFVGIFL 84 (627)
T ss_pred HHHHHhhc-CCCCeeehHHhHHHHHHhcccccchhHHHHHHHHhccCCCcCCccCHHHHHHHHH
Confidence 34577888 9999999999998888776554 1 2222 233444578899998888866443
No 171
>KOG4065|consensus
Probab=27.46 E-value=2.3e+02 Score=23.20 Aligned_cols=15 Identities=27% Similarity=0.818 Sum_probs=11.8
Q ss_pred hcCCCcccHHHHHHH
Q psy4949 148 FSGNGKVTVNDFMDT 162 (275)
Q Consensus 148 F~~d~~Is~~eFl~~ 162 (275)
|.+||.|...||+..
T Consensus 128 fN~DG~IDYgEflK~ 142 (144)
T KOG4065|consen 128 FNGDGVIDYGEFLKR 142 (144)
T ss_pred cCCCceeeHHHHHhh
Confidence 555899999999863
No 172
>KOG4251|consensus
Probab=27.24 E-value=68 Score=29.60 Aligned_cols=56 Identities=13% Similarity=0.189 Sum_probs=36.4
Q ss_pred HHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHH---HHhchhh-ccCCCceeHHHHH
Q psy4949 63 NWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKL---RYIFSQL-CDCNGHLVAWKFN 118 (275)
Q Consensus 63 ~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKl---r~~F~ly-~D~nG~i~~~el~ 118 (275)
--+|.--|.|.+|+|+..|.+.-+--=....+++-. +-.|... -|++|.|+.+|+.
T Consensus 104 mviFsKvDVNtDrkisAkEmqrwImektaEHfqeameeSkthFraVDpdgDGhvsWdEyk 163 (362)
T KOG4251|consen 104 MVIFSKVDVNTDRKISAKEMQRWIMEKTAEHFQEAMEESKTHFRAVDPDGDGHVSWDEYK 163 (362)
T ss_pred HHHHhhcccCccccccHHHHHHHHHHHHHHHHHHHHhhhhhheeeeCCCCCCceehhhhh
Confidence 367888888888888888887765432222222222 3466666 4778888888874
No 173
>PF09279 EF-hand_like: Phosphoinositide-specific phospholipase C, efhand-like; InterPro: IPR015359 This domain is predominantly found in the enzyme phosphoinositol-specific phospholipase C. It adopts a structure consisting of a core of four alpha helices, in an EF like fold, and is required for functioning of the enzyme []. ; PDB: 3OHM_B 3QR0_A 2ZKM_X 2FJU_B 3QR1_D 1DJW_B 1DJI_B 1DJG_B 1QAS_B 2ISD_B ....
Probab=27.08 E-value=2.4e+02 Score=20.34 Aligned_cols=59 Identities=15% Similarity=0.184 Sum_probs=42.8
Q ss_pred HHHHhhcCCCCCeeehHHHHHHHHHhcCCC-h-hhHHHHhchhh-cc----CCCceeHHHHHHHHHH
Q psy4949 64 WLLSAYSVESLGRIRVFSIKVALATMCSGK-L-MDKLRYIFSQL-CD----CNGHLVAWKFNEYLQD 123 (275)
Q Consensus 64 ~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~-l-~dKlr~~F~ly-~D----~nG~i~~~el~~~L~~ 123 (275)
-+|+.|-. +.+.|++.+|.--|.---+.. + .+..+.++..| .+ ..+.||..+|..+|.+
T Consensus 4 ~if~~ys~-~~~~mt~~~f~~FL~~eQ~~~~~~~~~~~~li~~~~~~~~~~~~~~lt~~gF~~fL~S 69 (83)
T PF09279_consen 4 EIFRKYSS-DKEYMTAEEFRRFLREEQGEPRLTDEQAKELIEKFEPDERNRQKGQLTLEGFTRFLFS 69 (83)
T ss_dssp HHHHHHCT-TSSSEEHHHHHHHHHHTSS-TTSSHHHHHHHHHHHHHHHHHHCTTEEEHHHHHHHHHS
T ss_pred HHHHHHhC-CCCcCCHHHHHHHHHHHhccccCcHHHHHHHHHHHccchhhcccCCcCHHHHHHHHCC
Confidence 46777744 788888888888887666552 3 55667777777 22 4799999999988864
No 174
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=26.19 E-value=90 Score=29.39 Aligned_cols=77 Identities=22% Similarity=0.567 Sum_probs=45.0
Q ss_pred hHHHhhhhcCC-Cc--ccHHHHHHHHhcCCCCcccchhhhhhccccc---CCCCcCcccCcCCCCcc----------ccc
Q psy4949 141 DTLAQEIFSGN-GK--VTVNDFMDTMMSEPGPACLIWLPLLHRLTAV---ESTSHPIACDACGRANF----------VGF 204 (275)
Q Consensus 141 e~~v~~cF~~d-~~--Is~~eFl~~~~~d~~Pq~lvWL~~~~r~~~~---~~~~h~~~Cd~C~~~pI----------~G~ 204 (275)
+..++..+.++ .. ....-|+..+++ +.|-.+..++... +.-++.-.|-+|+..|. .|.
T Consensus 135 e~~a~alL~~~~~~~~~a~apfi~AALq------~~~~~~a~~l~~~~~~~~~~~~~~CPvCGs~P~~s~~~~~~~~~G~ 208 (305)
T TIGR01562 135 KAMAIALLAGDFDLLSAALVPFLGAALQ------VAWAHWALGLEGGAVVETRESRTLCPACGSPPVASMVRQGGKETGL 208 (305)
T ss_pred HHHHHHHhcCCccccchhhhHHHHHHHH------HHHHHHHHhCCccccCcccCCCCcCCCCCChhhhhhhcccCCCCCc
Confidence 45667777774 23 334447766643 3454444443322 22345679999999773 344
Q ss_pred ee-eeccCCC-Cc----cchhhhhC
Q psy4949 205 RY-RCAKCGN-FQ----MCQECFWW 223 (275)
Q Consensus 205 Ry-kC~~C~~-~d----LC~~C~~~ 223 (275)
|| .|..|.- +. -|..|-..
T Consensus 209 RyL~CslC~teW~~~R~~C~~Cg~~ 233 (305)
T TIGR01562 209 RYLSCSLCATEWHYVRVKCSHCEES 233 (305)
T ss_pred eEEEcCCCCCcccccCccCCCCCCC
Confidence 55 7888863 33 38888754
No 175
>PLN02228 Phosphoinositide phospholipase C
Probab=25.40 E-value=1.3e+02 Score=30.94 Aligned_cols=64 Identities=17% Similarity=0.265 Sum_probs=43.5
Q ss_pred ChhhHHHHhchhhccCCCceeHHHHHHHHHHHHhchhhccCCCCCCCchHHHhhhh---------cCCCcccHHHHHHHH
Q psy4949 93 KLMDKLRYIFSQLCDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIF---------SGNGKVTVNDFMDTM 163 (275)
Q Consensus 93 ~l~dKlr~~F~ly~D~nG~i~~~el~~~L~~i~~i~~~~gE~~~f~~~e~~v~~cF---------~~d~~Is~~eFl~~~ 163 (275)
.+-+=++.+|..|+++ +.|+.++|..+|++...... .+.+.+..+| ...+.++++.|..++
T Consensus 21 ~~~~ei~~if~~~s~~-~~~t~~~~~~FL~~~Q~~~~---------~~~~~~~~i~~~~~~~~~~~~~~~~~~~gF~~yl 90 (567)
T PLN02228 21 EPPVSIKRLFEAYSRN-GKMSFDELLRFVSEVQGERH---------AGLDYVQDIFHSVKHHNVFHHHGLVHLNAFYRYL 90 (567)
T ss_pred CCcHHHHHHHHHhcCC-CccCHHHHHHHHHHhcCCcc---------CCHHHHHHHHHHhccchhhcccCccCHHHHHHHh
Confidence 3555678899999753 68999999999987643321 1222233333 234679999999999
Q ss_pred hcC
Q psy4949 164 MSE 166 (275)
Q Consensus 164 ~~d 166 (275)
+++
T Consensus 91 ~s~ 93 (567)
T PLN02228 91 FSD 93 (567)
T ss_pred cCc
Confidence 875
No 176
>KOG3380|consensus
Probab=25.14 E-value=76 Score=26.80 Aligned_cols=61 Identities=18% Similarity=0.387 Sum_probs=37.1
Q ss_pred HHHHHHHcCCCCcCCCCCCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcCCCCCee
Q psy4949 8 VIEAFRENGLNAIELQSDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVESLGRI 77 (275)
Q Consensus 8 ~~e~f~~~~l~~~~~~~~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~~~~G~I 77 (275)
|+.+|+.....+. =..+|..+.--++.-||++++. |+ +-..|.. +++|.-.+.-..|-|.|
T Consensus 82 vL~~ik~adI~~~--v~~Ls~e~~DiLmKYiYkGm~~--p~----d~~s~~~-LL~WHEk~~~~~GvG~I 142 (152)
T KOG3380|consen 82 VLTSIKQADIEAA--VKKLSTEEIDILMKYIYKGMEI--PS----DNSSCVS-LLQWHEKLVAKSGVGCI 142 (152)
T ss_pred HHHHHHHHhHHHH--HHHhhHHHHHHHHHHHHHHhcC--cc----ccchHHH-HHHHHHHHHHhcCCceE
Confidence 4445554443221 1346666777778889988774 44 2233333 56698888888887776
No 177
>PRK04351 hypothetical protein; Provisional
Probab=24.52 E-value=79 Score=26.50 Aligned_cols=50 Identities=28% Similarity=0.622 Sum_probs=26.6
Q ss_pred HHHHHHHhcCCCCcccchhhhhhcccccCCCCcCcccCcCCC-----CccccceeeeccCCC
Q psy4949 157 NDFMDTMMSEPGPACLIWLPLLHRLTAVESTSHPIACDACGR-----ANFVGFRYRCAKCGN 213 (275)
Q Consensus 157 ~eFl~~~~~d~~Pq~lvWL~~~~r~~~~~~~~h~~~Cd~C~~-----~pI~G~RykC~~C~~ 213 (275)
.+|..|+.+--.| +..+++.. ....+...|..|+. ..+.=.||+|-.|..
T Consensus 86 ~~fk~~~~~v~~~------r~~~~~~~-~~~~y~Y~C~~Cg~~~~r~Rr~n~~~yrCg~C~g 140 (149)
T PRK04351 86 RDFKELLKQVGGP------RYCPPLPS-QKKNYLYECQSCGQQYLRKRRINTKRYRCGKCRG 140 (149)
T ss_pred HHHHHHHHHhCCC------cccCCCCC-CCceEEEECCCCCCEeeeeeecCCCcEEeCCCCc
Confidence 4688887653222 22333333 22335789988986 122224677777653
No 178
>cd07313 terB_like_2 tellurium resistance terB-like protein, subgroup 2. This family includes several uncharacterized bacterial proteins. Protein sequence homology analysis shows they are similar to tellurium resistance protein terB, but the function of this family is unknown.
Probab=24.18 E-value=3.1e+02 Score=20.50 Aligned_cols=56 Identities=9% Similarity=0.068 Sum_probs=37.0
Q ss_pred HHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhchhh--ccCCCceeHHHHHHHH
Q psy4949 64 WLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL--CDCNGHLVAWKFNEYL 121 (275)
Q Consensus 64 ~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F~ly--~D~nG~i~~~el~~~L 121 (275)
.+.+.|........++.+|.-.+.-.+ +.++|...+--++ +-.||.++..|-..+-
T Consensus 41 ~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~r~~~l~~L~~vA~ADG~~~~~E~~~l~ 98 (104)
T cd07313 41 ELLAEAEALEEEAPDLYEFTSLIKEHF--DYEERLELVEALWEVAYADGELDEYEEHLIR 98 (104)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 444555555566678888888887666 6666765555554 3567888988865443
No 179
>KOG3555|consensus
Probab=23.91 E-value=70 Score=30.85 Aligned_cols=84 Identities=11% Similarity=0.179 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCC---CCccC----------hHHHHHHHHHHHHHhhcCCCCCeeehHHHHHHHHHhcCCCh
Q psy4949 28 VARFETLLSSLYHNLNKRLPV---SQQVH----------VEVLSGLLLNWLLSAYSVESLGRIRVFSIKVALATMCSGKL 94 (275)
Q Consensus 28 ~~~l~~~L~~lY~~~~k~~P~---~~~v~----------~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l 94 (275)
..+|-.=|.+||..+...-.. +-.++ .+.| .--+.||||-.|.|.||.++-.|+.. +-.++-
T Consensus 206 L~~lg~RL~dWF~~lhe~s~~~~~~ss~~~~~~~~d~s~~p~C-Kds~gWMFnklD~N~Dl~Ld~sEl~~----I~ldkn 280 (434)
T KOG3555|consen 206 LRRLGNRLRDWFKALHEDSSQNDKTSSLHSAASGFDTSILPIC-KDSLGWMFNKLDTNYDLLLDQSELRA----IELDKN 280 (434)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCcchhhcccccccccccCcch-hhhhhhhhhccccccccccCHHHhhh----hhccCc
Confidence 345555689999998553110 00111 1223 33468999999999999999888643 334555
Q ss_pred hhHHHHhchhh-ccCCCceeHHH
Q psy4949 95 MDKLRYIFSQL-CDCNGHLVAWK 116 (275)
Q Consensus 95 ~dKlr~~F~ly-~D~nG~i~~~e 116 (275)
+.=.+-.|... ...+|.|+-.|
T Consensus 281 E~CikpFfnsCD~~kDg~iS~~E 303 (434)
T KOG3555|consen 281 EACIKPFFNSCDTYKDGSISTNE 303 (434)
T ss_pred hhHHHHHHhhhcccccCccccch
Confidence 55556666665 34566655544
No 180
>PRK11426 hypothetical protein; Provisional
Probab=23.87 E-value=4.2e+02 Score=21.90 Aligned_cols=71 Identities=24% Similarity=0.319 Sum_probs=54.5
Q ss_pred HHHHHHHHHHcCCCC--------cCCCCCCCHHHHHHHHH-HHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhc-CCCC
Q psy4949 5 IWNVIEAFRENGLNA--------IELQSDVSVARFETLLS-SLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYS-VESL 74 (275)
Q Consensus 5 ~~~~~e~f~~~~l~~--------~~~~~~l~~~~l~~~L~-~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD-~~~~ 74 (275)
|..+++-|++.||.. .+++..|+..++..+|- +-...+.... -++.+++.+.++..|=.+.| -..+
T Consensus 32 L~gll~kf~q~GLgd~v~SWvg~g~~N~pIs~~ql~~~lG~d~i~~lA~q~----Gl~~~~~~~~LA~~LP~~VDklTP~ 107 (132)
T PRK11426 32 IQVLLEKLQSGGLGAILSTWLSNQQGNQSVSGEQLESALGTNAVSDLGQKL----GVDTSTASSLLAEQLPKIIDALSPQ 107 (132)
T ss_pred HHHHHHHHHhCCchhHHHHhhcCCCCCCCCCHHHHHHHhChHHHHHHHHHH----CcCHHHHHHHHHHHhHHHHhccCCC
Confidence 567889999999862 23478999999988876 5666665541 36889999999999999999 4578
Q ss_pred Ceeeh
Q psy4949 75 GRIRV 79 (275)
Q Consensus 75 G~I~~ 79 (275)
|++.-
T Consensus 108 G~lp~ 112 (132)
T PRK11426 108 GEVSP 112 (132)
T ss_pred CCCCc
Confidence 88865
No 181
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=22.69 E-value=36 Score=28.27 Aligned_cols=47 Identities=15% Similarity=0.313 Sum_probs=32.8
Q ss_pred CcccCcCCCCcccccee-eeccCCCCccchhhhhCCcccCCCCCCCceeeec
Q psy4949 190 PIACDACGRANFVGFRY-RCAKCGNFQMCQECFWWGRVSGGHNLEHEVKENH 240 (275)
Q Consensus 190 ~~~Cd~C~~~pI~G~Ry-kC~~C~~~dLC~~C~~~g~~~~~H~~~H~m~e~~ 240 (275)
-..|+.|+... ...|| |=..|-.|.+|..||..= =.|...||.-..|
T Consensus 80 lYeCnIC~etS-~ee~FLKPneCCgY~iCn~Cya~L---WK~~~~ypvCPvC 127 (140)
T PF05290_consen 80 LYECNICKETS-AEERFLKPNECCGYSICNACYANL---WKFCNLYPVCPVC 127 (140)
T ss_pred ceeccCccccc-chhhcCCcccccchHHHHHHHHHH---HHHcccCCCCCcc
Confidence 47899999744 44454 667899999999999531 1455677765443
No 182
>CHL00091 apcE phycobillisome linker protein
Probab=22.03 E-value=2.1e+02 Score=30.84 Aligned_cols=64 Identities=17% Similarity=0.106 Sum_probs=39.5
Q ss_pred CCCCHHHHHHHHHHHHHHHhhcCCCCCccChHHHHHHHHHHHHHhhcCCCCCeeehHHHHHHHHHhcCCChhhHHHHhc
Q psy4949 24 SDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIF 102 (275)
Q Consensus 24 ~~l~~~~l~~~L~~lY~~~~k~~P~~~~v~~~~~~~l~~~~lf~~fD~~~~G~I~~~ef~~aLs~Lc~G~l~dKlr~~F 102 (275)
...+.+++++++...|++.-.+-.....++- +... ++-.| ++|.|+|++|+-+|+ ..+-||-.|
T Consensus 710 ~~~s~~~~~~vI~AaYrQVfg~~~~~~~~~~-r~~~--lESqL------rnG~ItVReFVR~La------~Se~Yr~~F 773 (877)
T CHL00091 710 SHSDKENLEQVLRAAYRQIFERDLNSFIIGG-EFLD--IESAF------LNGQISVRELVEKLG------SSSLYGKEF 773 (877)
T ss_pred CCCCHHHHHHHHHHHHHHHhcccchhhhhhh-hhhh--HHHHH------hcCCccHHHHHHHHH------hhHHHHHHh
Confidence 4568999999999999996532110012221 1111 11111 699999999999998 356665544
No 183
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=21.43 E-value=57 Score=26.24 Aligned_cols=29 Identities=31% Similarity=0.753 Sum_probs=22.7
Q ss_pred cCcCCCCccccceeeeccCC-----CCccchhhhh
Q psy4949 193 CDACGRANFVGFRYRCAKCG-----NFQMCQECFW 222 (275)
Q Consensus 193 Cd~C~~~pI~G~RykC~~C~-----~~dLC~~C~~ 222 (275)
|-.|+. +..=.|++|..|. +|.+|.-++.
T Consensus 1 CPvCg~-~l~vt~l~C~~C~t~i~G~F~l~~~~~L 34 (113)
T PF09862_consen 1 CPVCGG-ELVVTRLKCPSCGTEIEGEFELPWFARL 34 (113)
T ss_pred CCCCCC-ceEEEEEEcCCCCCEEEeeeccchhhcC
Confidence 778886 7777899999987 4888877664
No 184
>PRK04860 hypothetical protein; Provisional
Probab=21.27 E-value=96 Score=26.35 Aligned_cols=51 Identities=25% Similarity=0.542 Sum_probs=27.6
Q ss_pred HHHHHHHHhc--CCCCcccchhhhhh--cccccCCCCcCcccCcCCCCc---------ccc-ceeeeccCCC
Q psy4949 156 VNDFMDTMMS--EPGPACLIWLPLLH--RLTAVESTSHPIACDACGRAN---------FVG-FRYRCAKCGN 213 (275)
Q Consensus 156 ~~eFl~~~~~--d~~Pq~lvWL~~~~--r~~~~~~~~h~~~Cd~C~~~p---------I~G-~RykC~~C~~ 213 (275)
-.||..|+.+ ..+| .+.| .+.......|...|. |.... ..| .+|+|..|..
T Consensus 87 g~ewk~lm~~v~g~~~------r~~h~~~~~~~~~~~~~Y~C~-C~~~~~~~rrH~ri~~g~~~YrC~~C~~ 151 (160)
T PRK04860 87 GKEWQWMMESVLGVPA------RRTHQFEVQSVRGKTFPYRCK-CQEHQLTVRRHNRVVRGEAVYRCRRCGE 151 (160)
T ss_pred CHHHHHHHHHhcCCCC------cccCCCcCCccccCEEEEEcC-CCCeeCHHHHHHHHhcCCccEECCCCCc
Confidence 4578887754 2212 2334 223323334678887 85422 223 4599988864
No 185
>PF07754 DUF1610: Domain of unknown function (DUF1610); InterPro: IPR011668 This domain is found in archaeal species. It is likely to bind zinc via its four well-conserved cysteine residues.
Probab=21.11 E-value=71 Score=18.59 Aligned_cols=10 Identities=30% Similarity=1.152 Sum_probs=7.5
Q ss_pred cceeeeccCC
Q psy4949 203 GFRYRCAKCG 212 (275)
Q Consensus 203 G~RykC~~C~ 212 (275)
|.+|.|-+|-
T Consensus 14 ~v~f~CPnCG 23 (24)
T PF07754_consen 14 AVPFPCPNCG 23 (24)
T ss_pred CceEeCCCCC
Confidence 5678888873
No 186
>PF14513 DAG_kinase_N: Diacylglycerol kinase N-terminus; PDB: 1TUZ_A.
Probab=20.47 E-value=2.1e+02 Score=23.76 Aligned_cols=27 Identities=19% Similarity=0.438 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcC-CCCcCCCCCCCHHHH
Q psy4949 5 IWNVIEAFRENG-LNAIELQSDVSVARF 31 (275)
Q Consensus 5 ~~~~~e~f~~~~-l~~~~~~~~l~~~~l 31 (275)
|..|++-|.+.| |..-.++..|+...-
T Consensus 27 lkdvl~eF~~~g~~~~~~~~~~Id~egF 54 (138)
T PF14513_consen 27 LKDVLKEFHGDGSLAKYNPEEPIDYEGF 54 (138)
T ss_dssp HHHHHHHH-HTSGGGGGEETTEE-HHHH
T ss_pred HHHHHHHHhcCCcccccCCCCCcCHHHH
Confidence 567888888777 444456677777764
No 187
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=20.24 E-value=37 Score=21.25 Aligned_cols=16 Identities=31% Similarity=0.835 Sum_probs=12.5
Q ss_pred CcccCcCCCCcccccee
Q psy4949 190 PIACDACGRANFVGFRY 206 (275)
Q Consensus 190 ~~~Cd~C~~~pI~G~Ry 206 (275)
-+.|..|+. +|...||
T Consensus 4 ~~~C~nC~R-~v~a~Rf 19 (33)
T PF08209_consen 4 YVECPNCGR-PVAASRF 19 (33)
T ss_dssp EEE-TTTSS-EEEGGGH
T ss_pred eEECCCCcC-Ccchhhh
Confidence 368999997 9998887
Done!