RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4949
(275 letters)
>gnl|CDD|149945 pfam09068, efhand_1, EF hand. Members of this family adopt a
helix-loop-helix motif, as per other EF hand domains.
However, since they do not contain the canonical pattern
of calcium binding residues found in many EF hand
domains, they do not bind calcium ions. The main
function of this domain is the provision of specificity
in beta-dystroglycan recognition, though in dystrophin
it serves an additional role: stabilisation of the WW
domain (pfam00397), enhancing dystroglycan binding.
Length = 125
Score = 113 bits (285), Expect = 1e-31
Identities = 42/90 (46%), Positives = 57/90 (63%)
Query: 1 HTIDIWNVIEAFRENGLNAIELQSDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGL 60
+D+WNVIE FR +GLN ++ + +SVA+ TLL++LY L KRLP V E+ L
Sbjct: 36 DLVDLWNVIEIFRRHGLNQLDSTASLSVAQLITLLTTLYDFLEKRLPTLVNVPAELAVDL 95
Query: 61 LLNWLLSAYSVESLGRIRVFSIKVALATMC 90
LLNWLL+ Y G+IRV S K+ L +C
Sbjct: 96 LLNWLLNVYDPGRTGKIRVLSFKIGLILLC 125
>gnl|CDD|149946 pfam09069, efhand_2, EF-hand. Members of this family adopt a
helix-loop-helix motif, as per other EF hand domains.
However, since they do not contain the canonical pattern
of calcium binding residues found in many EF hand
domains, they do not bind calcium ions. The main
function of this domain is the provision of specificity
in beta-dystroglycan recognition, though in dystrophin
it serves an additional role: stabilisation of the WW
domain (pfam00397), enhancing dystroglycan binding.
Length = 89
Score = 109 bits (275), Expect = 1e-30
Identities = 36/91 (39%), Positives = 49/91 (53%), Gaps = 4/91 (4%)
Query: 94 LMDKLRYIFSQLCDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSGNGK 153
L DK RY+FSQ+ D NG + K L + L +P V E SF + + F GK
Sbjct: 1 LEDKYRYLFSQISDSNGLMDQRKLGLLLHEALQLPRQVGEGASFGGIEPSVRSCFPQVGK 60
Query: 154 --VTVNDFMDTMMSEPGPACLIWLPLLHRLT 182
+ +N F+D +M E P L+WLP+LHRL
Sbjct: 61 PKIELNHFLDWLMLE--PQSLVWLPVLHRLA 89
>gnl|CDD|239074 cd02334, ZZ_dystrophin, Zinc finger, ZZ type. Zinc finger present
in dystrophin and dystrobrevin. The ZZ motif coordinates
two zinc ions and most likely participates in ligand
binding or molecular scaffolding. Dystrophin attaches
actin filaments to an integral membrane glycoprotein
complex in muscle cells. The ZZ domain in dystrophin has
been shown to be essential for binding to the membrane
protein beta-dystroglycan.
Length = 49
Score = 78.9 bits (195), Expect = 2e-19
Identities = 22/46 (47%), Positives = 27/46 (58%)
Query: 193 CDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEVKE 238
C+ C GFRYRC KC N+ +CQ CF+ GR S H H +KE
Sbjct: 3 CNICKEFPITGFRYRCLKCFNYDLCQSCFFSGRTSKSHKNSHPMKE 48
>gnl|CDD|197633 smart00291, ZnF_ZZ, Zinc-binding domain, present in Dystrophin,
CREB-binding protein. Putative zinc-binding domain
present in dystrophin-like proteins, and CREB-binding
protein/p300 homologues. The ZZ in dystrophin appears to
bind calmodulin. A missense mutation of one of the
conserved cysteines in dystrophin results in a patient
with Duchenne muscular dystrophy.
Length = 44
Score = 54.4 bits (131), Expect = 2e-10
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 188 SHPIACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHN 231
H +CD CG VG RY C C ++ +CQ CF G G H+
Sbjct: 2 HHSYSCDTCG-KPIVGVRYHCLVCPDYDLCQSCFAKGSAGGEHS 44
>gnl|CDD|144236 pfam00569, ZZ, Zinc finger, ZZ type. Zinc finger present in
dystrophin, CBP/p300. ZZ in dystrophin binds calmodulin.
Putative zinc finger; binding not yet shown. Four to six
cysteine residues in its sequence are responsible for
coordinating zinc ions, to reinforce the structure.
Length = 46
Score = 51.7 bits (124), Expect = 2e-09
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 187 TSHPIACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGH 230
H C+ C +GFRY C +C ++ +CQ CF+ GR +GGH
Sbjct: 1 IHHVYTCNICKECPIIGFRYHCLRCFDYDLCQSCFFTGRKAGGH 44
>gnl|CDD|239078 cd02338, ZZ_PCMF_like, Zinc finger, ZZ type. Zinc finger present in
potassium channel modulatory factor (PCMF) 1 and
related proteins. The ZZ motif coordinates two zinc ions
and most likely participates in ligand binding or
molecular scaffolding. Human potassium channel
modulatory factor 1 or FIGC has been shown to possess
intrinsic E3 ubiquitin ligase activity and to promote
ubiquitination.
Length = 49
Score = 51.2 bits (123), Expect = 3e-09
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 191 IACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEH 234
++CD CG++NF G RY+C C ++ +C +C+ G + H +H
Sbjct: 1 VSCDGCGKSNFTGRRYKCLICYDYDLCADCYDSGVTTERHLFDH 44
>gnl|CDD|239069 cd02249, ZZ, Zinc finger, ZZ type. Zinc finger present in
dystrophin, CBP/p300 and many other proteins. The ZZ
motif coordinates one or two zinc ions and most likely
participates in ligand binding or molecular scaffolding.
Many proteins containing ZZ motifs have other
zinc-binding motifs as well, and the majority serve as
scaffolds in pathways involving acetyltransferase,
protein kinase, or ubiqitin-related activity. ZZ
proteins can be grouped into the following functional
classes: chromatin modifying, cytoskeletal scaffolding,
ubiquitin binding or conjugating, and membrane receptor
or ion-channel modifying proteins.
Length = 46
Score = 46.7 bits (111), Expect = 2e-07
Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 191 IACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEVKE 238
+CD C VG RY C C +F +C C+ + GH +H E
Sbjct: 1 YSCDGCL-KPIVGVRYHCLVCEDFDLCSSCY--AKGKKGHPPDHSFTE 45
>gnl|CDD|239079 cd02339, ZZ_Mind_bomb, Zinc finger, ZZ type. Zinc finger present in
Drosophila Mind bomb (D-mib) and related proteins. The
ZZ motif coordinates two zinc ions and most likely
participates in ligand binding or molecular scaffolding.
Mind bomb is an E3 ubiqitin ligase that has been shown
to regulate signaling by the Notch ligand Delta in
Drosophila melanogaster.
Length = 45
Score = 44.0 bits (104), Expect = 1e-06
Identities = 16/45 (35%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 191 IACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHE 235
I CD C + +G R++CA+C N+ +C C+ H+LEH
Sbjct: 1 IICDTCRKQGIIGIRWKCAECPNYDLCTTCY----HGDKHDLEHR 41
>gnl|CDD|239085 cd02345, ZZ_dah, Zinc finger, ZZ type. Zinc finger present in
Drosophila dah and related proteins. The ZZ motif
coordinates two zinc ions and most likely participates
in ligand binding or molecular scaffolding. Dah
(discontinuous actin hexagon) is a membrane associated
protein essential for cortical furrow formation in
Drosophila. .
Length = 49
Score = 42.6 bits (100), Expect = 4e-06
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 191 IACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEH 234
++C AC + + G R+ C C ++ +C C+ GR + HN H
Sbjct: 1 LSCSACRKQDISGIRFPCQVCRDYSLCLGCYTKGRETKRHNSLH 44
>gnl|CDD|239083 cd02343, ZZ_EF, Zinc finger, ZZ type. Zinc finger present in
proteins with an EF_hand motif. The ZZ motif coordinates
two zinc ions and most likely participates in ligand
binding or molecular scaffolding.
Length = 48
Score = 40.4 bits (94), Expect = 3e-05
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Query: 191 IACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEV 236
I+CD C RYRC +C + +C+ CF G GH +HE+
Sbjct: 1 ISCDGCDEIA-PWHRYRCLQCTDMDLCKTCFLGGVKPEGHEDDHEM 45
>gnl|CDD|239081 cd02341, ZZ_ZZZ3, Zinc finger, ZZ type. Zinc finger present in ZZZ3
(ZZ finger containing 3) and related proteins. The ZZ
motif coordinates two zinc ions and most likely
participates in ligand binding or molecular scaffolding.
Length = 48
Score = 37.4 bits (87), Expect = 3e-04
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 191 IACDACGRANFVGFRYRCAKC--GNFQMCQECF 221
CD+CG G RY C++C G+F +CQ+C
Sbjct: 1 FKCDSCGIEPIPGTRYHCSECDDGDFDLCQDCV 33
>gnl|CDD|239075 cd02335, ZZ_ADA2, Zinc finger, ZZ type. Zinc finger present in
ADA2, a putative transcriptional adaptor, and related
proteins. The ZZ motif coordinates two zinc ions and
most likely participates in ligand binding or molecular
scaffolding.
Length = 49
Score = 36.9 bits (86), Expect = 4e-04
Identities = 16/42 (38%), Positives = 22/42 (52%)
Query: 193 CDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEH 234
CD C + R +CA+C +F +C ECF G G H +H
Sbjct: 3 CDYCSKDITGTIRIKCAECPDFDLCLECFSAGAEIGKHRNDH 44
>gnl|CDD|239080 cd02340, ZZ_NBR1_like, Zinc finger, ZZ type. Zinc finger present in
Drosophila ref(2)P, NBR1, Human sequestosome 1 and
related proteins. The ZZ motif coordinates two zinc ions
and most likely participates in ligand binding or
molecular scaffolding. Drosophila ref(2)P appears to
control the multiplication of sigma rhabdovirus. NBR1
(Next to BRCA1 gene 1 protein) interacts with
fasciculation and elongation protein zeta-1 (FEZ1) and
calcium and integrin binding protein (CIB), and may
function in cell signalling pathways. Sequestosome 1 is
a phosphotyrosine independent ligand for the Lck SH2
domain and binds noncovalently to ubiquitin via its UBA
domain.
Length = 43
Score = 36.5 bits (85), Expect = 7e-04
Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 191 IACDACGRANFVGFRYRCAKCGNFQMCQEC 220
+ CD C VG RY+C C ++ +C+ C
Sbjct: 1 VICDGCQGPI-VGVRYKCLVCPDYDLCESC 29
>gnl|CDD|239084 cd02344, ZZ_HERC2, Zinc finger, ZZ type. Zinc finger present in
HERC2 and related proteins. HERC2 is a potential E3
ubiquitin protein ligase and/or guanine nucleotide
exchange factor. The ZZ motif coordinates two zinc ions
and most likely participates in ligand binding or
molecular scaffolding.
Length = 45
Score = 34.1 bits (78), Expect = 0.004
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 191 IACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEH 234
+ CD C G R++C C +F C+ CF + HN H
Sbjct: 1 VTCDGCQMFPINGPRFKCRNCDDFDFCENCFK----TRKHNTRH 40
>gnl|CDD|219497 pfam07649, C1_3, C1-like domain. This short domain is rich in
cysteines and histidines. The pattern of conservation is
similar to that found in pfam00130.
Length = 30
Score = 30.4 bits (69), Expect = 0.074
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 193 CDACGRANFVGFRYRCAKCGNFQMCQEC 220
C+ACG Y C++C +F + ++C
Sbjct: 3 CNACGLPIDGDPFYSCSEC-DFVLHEDC 29
>gnl|CDD|239076 cd02336, ZZ_RSC8, Zinc finger, ZZ type. Zinc finger present in RSC8
and related proteins. RSC8 is a component of the RSC
complex, which is closely related to the SWI/SNF complex
and is involved in remodeling chromatin structure. The
ZZ motif coordinates a zinc ion and most likely
participates in ligand binding or molecular scaffolding.
Length = 45
Score = 30.4 bits (69), Expect = 0.093
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 193 CDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHN 231
C CG + RY K + +C C+ GR
Sbjct: 3 CFTCG-NDCTRVRYHNLKAKKYDLCPSCYQEGRFPSNFQ 40
>gnl|CDD|239082 cd02342, ZZ_UBA_plant, Zinc finger, ZZ type. Zinc finger present in
plant ubiquitin-associated (UBA) proteins. The ZZ motif
coordinates a zinc ion and most likely participates in
ligand binding or molecular scaffolding.
Length = 43
Score = 30.2 bits (68), Expect = 0.12
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 191 IACDACGRANFVGFRYRCAKCGNFQMCQECF 221
I CD CG G RY+ ++ +C CF
Sbjct: 1 IQCDGCGVLPITGPRYKSKVKEDYDLCTICF 31
>gnl|CDD|212582 cd11687, PpPFK_gamma, Pichia pastoris 6-phosphofructokinase, gamma
subunit. Pichia pastoris 6-phosphofructokinase (PpPfk)
is the most complex and probably largest (1 MDa)
eukaryotic Pfk. It forms a dodecamer of four
alpha-beta-gamma trimers. The gamma unit is unique, in
contrast to other eukaryotic ATP-dependent
6-phosphofructokinases, and participates in
oligomerization of the alpha and beta chains. It is not
essential for enzymatic activity, but it modulates the
allosteric behavior of the enzyme.
Length = 346
Score = 31.5 bits (71), Expect = 0.46
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 6/31 (19%)
Query: 231 NLEHEVKE------NHPVNKLVTRYANHFAV 255
NL HE +E N PV+KL+T Y N++ V
Sbjct: 45 NLAHETQEFSRKNDNAPVDKLLTNYYNNYEV 75
>gnl|CDD|227445 COG5114, COG5114, Histone acetyltransferase complex SAGA/ADA,
subunit ADA2 [Chromatin structure and dynamics].
Length = 432
Score = 31.2 bits (70), Expect = 0.66
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 191 IACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEH 234
I CD C +C +C +C CF G +G H+ H
Sbjct: 6 IHCDVCFLDMTDLTFIKCNECPAVDLCLPCFVNGIETGVHSPYH 49
>gnl|CDD|236983 PRK11788, PRK11788, tetratricopeptide repeat protein; Provisional.
Length = 389
Score = 30.5 bits (70), Expect = 0.84
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 9/39 (23%)
Query: 204 FRYRCAKCGNFQMCQECFW-------WGRVSGGHNLEHE 235
RYRC CG F + +W W + L+ E
Sbjct: 353 PRYRCRNCG-FT-ARTLYWHCPSCKAWETIKPIRGLDGE 389
>gnl|CDD|221766 pfam12773, DZR, Double zinc ribbon. This family consists of a pair
of zinc ribbon domains.
Length = 45
Score = 27.4 bits (61), Expect = 1.0
Identities = 8/23 (34%), Positives = 10/23 (43%), Gaps = 1/23 (4%)
Query: 190 PIACDACGRANFVGFRYRCAKCG 212
P C +CG R+ C CG
Sbjct: 24 PRECPSCGAPVDPNARF-CPNCG 45
>gnl|CDD|206209 pfam14039, YusW, YusW-like protein. The YusW-like protein family
includes the B. subtilis YusW protein, which is
functionally uncharacterized. This family of proteins
is found in bacteria, and is approximately 90 amino
acids in length.
Length = 92
Score = 28.3 bits (64), Expect = 1.1
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Query: 6 WNVIEAFRENGLNAIELQSDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLN 63
+ EA E+GLN EL+ D ++ E LLS L +++ +V +VLS L+
Sbjct: 24 NDKEEAKIEDGLNGEELEGDEALEELEMLLSEL--SVDSSTS-EDEVIDQVLSAFNLD 78
>gnl|CDD|227345 COG5012, COG5012, Predicted cobalamin binding protein [General
function prediction only].
Length = 227
Score = 29.2 bits (66), Expect = 1.8
Identities = 10/31 (32%), Positives = 11/31 (35%)
Query: 1 HTIDIWNVIEAFRENGLNAIELQSDVSVARF 31
H I V G I+L DV V F
Sbjct: 117 HDIGKNIVATMLEAAGFEVIDLGRDVPVEEF 147
>gnl|CDD|197632 smart00290, ZnF_UBP, Ubiquitin Carboxyl-terminal Hydrolase-like
zinc finger.
Length = 50
Score = 26.6 bits (59), Expect = 2.1
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 5/41 (12%)
Query: 207 RCAKCGNFQ---MCQECFWW--GRVSGGHNLEHEVKENHPV 242
RC+ CG + +C C GR GH LEH + HP+
Sbjct: 1 RCSVCGTIENLWLCLTCGQVGCGRYQNGHALEHFEETGHPL 41
>gnl|CDD|236927 PRK11551, PRK11551, putative 3-hydroxyphenylpropionic transporter
MhpT; Provisional.
Length = 406
Score = 29.2 bits (66), Expect = 2.6
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 6/46 (13%)
Query: 60 LLLNWLLSAYSVESLGRIRV------FSIKVALATMCSGKLMDKLR 99
LLNWL S + L R + F+I AL ++ G LMD+LR
Sbjct: 238 FLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLLIGALMDRLR 283
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14
and similar proteins. Human HSPA14 (also known as
70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene
encoding HSPA14 maps to 10p13), is ribosome-associated
and belongs to the heat shock protein 70 (HSP70) family
of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). HSPA14
interacts with the J-protein MPP11 to form the mammalian
ribosome-associated complex (mRAC). HSPA14 participates
in a pathway along with Nijmegen breakage syndrome 1
(NBS1, also known as p85 or nibrin), heat shock
transcription factor 4b (HSF4b), and HSPA4 (belonging to
a different subfamily), that induces tumor migration,
invasion, and transformation. HSPA14 is a potent T
helper cell (Th1) polarizing adjuvant that contributes
to antitumor immune responses.
Length = 375
Score = 29.3 bits (66), Expect = 2.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Query: 1 HTIDIWNVIEAFRENGLNAIELQSDVSVARFETLLSSLY 39
+ F E+ I+ Q VS ARFE+L SSL+
Sbjct: 269 QILSTLPSANCFVESLYEGIDFQCSVSRARFESLCSSLF 307
>gnl|CDD|239077 cd02337, ZZ_CBP, Zinc finger, ZZ type. Zinc finger present in
CBP/p300 and related proteins. The ZZ motif coordinates
two zinc ions and most likely participates in ligand
binding or molecular scaffolding. CREB-binding protein
(CBP) is a large multidomain protein that provides
binding sites for transcriptional coactivators, the role
of the ZZ domain in CBP/p300 is unclear.
Length = 41
Score = 26.4 bits (58), Expect = 2.7
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
Query: 193 CDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLE 233
C+ C V R+ C C ++ +C C+ + H +E
Sbjct: 3 CNECKHH--VETRWHCTVCEDYDLCITCY--NTKNHPHKME 39
>gnl|CDD|178104 PLN02486, PLN02486, aminoacyl-tRNA ligase.
Length = 383
Score = 28.9 bits (65), Expect = 2.8
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 110 GHLVAWKFNEYLQDVLAIP 128
GHL+ + F +YLQD +P
Sbjct: 90 GHLIPFMFTKYLQDAFKVP 108
>gnl|CDD|227584 COG5259, RSC8, RSC chromatin remodeling complex subunit RSC8
[Chromatin structure and dynamics / Transcription].
Length = 531
Score = 28.7 bits (64), Expect = 3.3
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 185 ESTSHPIACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHN 231
S HP +C CG +F RY + + C EC+ GR
Sbjct: 219 HSEKHPSSCSCCGNKSFNT-RYHNLRAEKYNSCSECYDQGRFPSEFT 264
>gnl|CDD|181091 PRK07720, fliJ, flagellar biosynthesis chaperone; Validated.
Length = 146
Score = 27.7 bits (62), Expect = 4.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 27 SVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGL 60
+V+RFE + LY L ++ + Q ++ SGL
Sbjct: 28 AVSRFEQVAEKLYELLKQKEDLEQAKEEKLQSGL 61
>gnl|CDD|184884 PRK14890, PRK14890, putative Zn-ribbon RNA-binding protein;
Provisional.
Length = 59
Score = 26.1 bits (58), Expect = 5.0
Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 17/58 (29%)
Query: 184 VESTSHPIACDACG-----RANFVGFR---------YRCAKC---GNFQMCQECFWWG 224
+ P C +CG R V F YRC KC N C +C + G
Sbjct: 1 ISEMMEPPKCTSCGIEIAPREKAVKFLCPNCGEVIIYRCEKCRKQSNPYTCPKCGFEG 58
>gnl|CDD|235202 PRK04023, PRK04023, DNA polymerase II large subunit; Validated.
Length = 1121
Score = 28.3 bits (64), Expect = 5.1
Identities = 10/34 (29%), Positives = 12/34 (35%), Gaps = 7/34 (20%)
Query: 193 CDACGRANFVGFRYRCAKCGNFQM----CQECFW 222
C +CG+ F RC CG C C
Sbjct: 629 CPSCGK---ETFYRRCPFCGTHTEPVYRCPRCGI 659
>gnl|CDD|221453 pfam12172, DUF35_N, Rubredoxin-like zinc ribbon domain (DUF35_N).
This domain has no known function and is found in
conserved hypothetical archaeal and bacterial proteins.
The domain is duplicated in Rv3521. The structure of a
DUF35 representative reveals two long N-terminal helices
followed by a rubredoxin-like zinc ribbon domain
represented in this family and a C-terminal OB fold
domain. Zinc is chelated by the four conserved cysteines
in the alignment.
Length = 37
Score = 25.0 bits (55), Expect = 5.6
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 193 CDACGRANFVGFRYRCAKCGNFQM 216
C CGR +F R C CG+ ++
Sbjct: 14 CRDCGRVHFP-PRPVCPHCGSDEL 36
>gnl|CDD|116691 pfam08086, Toxin_17, Ergtoxin family. This family consists of
ergtoxin peptides which are toxins secreted by the
scorpions. The ergtoxins are capable of blocking the
function of K+ channels. More than 100 ergtoxins have
been found from scorpion venoms and they have been
classified into three subfamilies according to their
primary structures.
Length = 41
Score = 25.2 bits (55), Expect = 5.8
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 207 RCAKCGNFQMCQEC 220
RCAK G + CQ+C
Sbjct: 10 RCAKYGYYGQCQDC 23
>gnl|CDD|198310 cd03201, GST_C_DHAR, C-terminal, alpha helical domain of
Dehydroascorbate Reductase. Glutathione S-transferase
(GST) C-terminal domain family, Dehydroascorbate
Reductase (DHAR) subfamily; composed of plant-specific
DHARs, which are monomeric enzymes catalyzing the
reduction of DHA into ascorbic acid (AsA) using
glutathione as the reductant. DHAR allows plants to
recycle oxidized AsA before it is lost. AsA serves as a
cofactor of violaxanthin de-epoxidase in the xanthophyll
cycle and as an antioxidant in the detoxification of
reactive oxygen species. Because AsA is the major
reductant in plants, DHAR serves to regulate their redox
state. It has been suggested that a significant portion
of DHAR activity is plastidic, acting to reduce the
large amounts of ascorbate oxidized during hydrogen
peroxide scavenging by ascorbate peroxidase. DHAR
contains a conserved cysteine in its active site and in
addition to its reductase activity, shows thiol
transferase activity similar to glutaredoxins.
Length = 121
Score = 26.6 bits (59), Expect = 7.4
Identities = 11/41 (26%), Positives = 14/41 (34%)
Query: 110 GHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIFSG 150
GH W E L V + SF T + I +G
Sbjct: 77 GHYKGWSVPESLTAVHKYMELLFSRESFKKTKAPDEMIIAG 117
>gnl|CDD|236303 PRK08579, PRK08579, anaerobic ribonucleoside triphosphate
reductase; Provisional.
Length = 625
Score = 27.8 bits (62), Expect = 8.2
Identities = 9/20 (45%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
Query: 193 CDACGRANFVGFRYRCAKCG 212
C+ CGR+ G RC +CG
Sbjct: 571 CNKCGRS-TTGLYTRCPRCG 589
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.137 0.434
Gapped
Lambda K H
0.267 0.0667 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 13,797,904
Number of extensions: 1259569
Number of successful extensions: 1446
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1442
Number of HSP's successfully gapped: 42
Length of query: 275
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 179
Effective length of database: 6,679,618
Effective search space: 1195651622
Effective search space used: 1195651622
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.2 bits)