RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4949
(275 letters)
>1eg3_A Dystrophin; EF-hand like domain, WW domain, structural protein;
2.00A {Homo sapiens} SCOP: a.39.1.7 a.39.1.7 b.72.1.1
PDB: 1eg4_A
Length = 261
Score = 190 bits (484), Expect = 4e-60
Identities = 50/191 (26%), Positives = 87/191 (45%), Gaps = 11/191 (5%)
Query: 1 HTIDIWNVIEAFRENGLNAIELQSDVSVARFETLLSSLYHNLNKRLPVSQQVHVEVLSGL 60
+ + +A ++ L + + + + L+++Y L + V+V + +
Sbjct: 77 DLLSLSAACDALDQHNLKQND--QPMDILQIINCLTTIYDRLEQEHN--NLVNVPLCVDM 132
Query: 61 LLNWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQLCDCNGHLVAWKFNEY 120
LNWLL+ Y GRIRV S K + ++C L DK RY+F Q+ G +
Sbjct: 133 CLNWLLNVYDTGRTGRIRVLSFKTGIISLCKAHLEDKYRYLFKQVASSTGFCDQRRLGLL 192
Query: 121 LQDVLAIPAAVLESPSFSYTD--TLAQEIF---SGNGKVTVNDFMDTMMSEPGPACLIWL 175
L D + IP + E SF ++ + F + ++ F+D M E P ++WL
Sbjct: 193 LHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMRLE--PQSMVWL 250
Query: 176 PLLHRLTAVES 186
P+LHR+ A E+
Sbjct: 251 PVLHRVAAAET 261
>2e5r_A Dystrobrevin alpha; ZZ domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 63
Score = 74.9 bits (184), Expect = 7e-18
Identities = 24/57 (42%), Positives = 36/57 (63%)
Query: 182 TAVESTSHPIACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEVKE 238
+ HP+ C C + +GFRYRC +C N+Q+CQ+CFW G G H+ +H++KE
Sbjct: 3 SGSSGVFHPVECSYCHSESMMGFRYRCQQCHNYQLCQDCFWRGHAGGSHSNQHQMKE 59
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Length = 82
Score = 63.9 bits (155), Expect = 1e-13
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 182 TAVESTSHP-IACDACGRANFVGFRYRCAKC---GNFQMCQECFWWGRVSGGHNLEHEVK 237
H CD CG G R+ C C + C C + H +H+++
Sbjct: 12 AESGFVQHVGFKCDNCGIEPIQGVRWHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLE 71
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Length = 98
Score = 57.0 bits (137), Expect = 7e-11
Identities = 19/65 (29%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 189 HP-IACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHE----VKENHPVN 243
H I C+ C + G Y+C +C + +CQECF +L H K N
Sbjct: 29 HLGIPCNNCKQFPIEGKCYKCTECIEYHLCQECF-----DSYCHLSHTFTFREKRNQKWR 83
Query: 244 KLVTR 248
L R
Sbjct: 84 SLEKR 88
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR
{Mus musculus} SCOP: g.44.1.6
Length = 52
Score = 42.8 bits (101), Expect = 2e-06
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 193 CDACGRANFVGFRYRCAKCGNFQMCQECF 221
C+ C V R+ C C ++ +C C+
Sbjct: 9 CNECKH--HVETRWHCTVCEDYDLCINCY 35
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.9 bits (103), Expect = 4e-05
Identities = 41/262 (15%), Positives = 68/262 (25%), Gaps = 111/262 (42%)
Query: 4 DIWNVIEAFRENGLNAIEL--------QSDVSVARFE--TLLSSLYHN------------ 41
D W E+F + AI + L SL +N
Sbjct: 287 DSW---ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 42 ------------LNKRLPVSQQVHVE--------VLSGLLLNWLLSAYSVESLGRIRVFS 81
N LP +QV + V+SG +SL +
Sbjct: 344 LTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSG----------PPQSL-----YG 388
Query: 82 IKVALATMCSGKLMDKLRYIFSQ----------------------------LCDCNGHLV 113
+ + L + +D+ R FS+ D + V
Sbjct: 389 LNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 114 AWKFNEYLQDVLAIP------AAVLESPSFSYTDTLAQEIFSGNGKVTVNDFMDTMMSEP 167
++ + + IP + L S S ++ + I + V + T +
Sbjct: 449 SFNAKD-----IQIPVYDTFDGSDLRVLSGSISERIVDCIIR----LPV-KWETTTQFKA 498
Query: 168 ------GPACLIWL-PLLHRLT 182
GP L L HR
Sbjct: 499 THILDFGPGGASGLGVLTHRNK 520
Score = 42.3 bits (99), Expect = 1e-04
Identities = 48/301 (15%), Positives = 85/301 (28%), Gaps = 103/301 (34%)
Query: 21 ELQSDVSVARFET---LLSSLYHNLNKRL--PVSQQVHVEVL--SGL-LLNWL------- 65
EL+ ++T L+ L + L + + E + GL +L WL
Sbjct: 172 ELRD-----LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 66 ----LSAYSVESLGRIRVFSIKVALATMC--SGKLMDKLRYIFSQLCDCNGHLVA----- 114
L + + S I V + G +LR + LV
Sbjct: 227 DKDYLLSIPI-SCPLIGVIQL-AHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIA 284
Query: 115 ----WK-FNEYLQDVLA----IPAAVLES-PSFSYTDTLAQE-IFSGNGKVTVNDFMDTM 163
W+ F ++ + I E+ P+ S ++ ++ + + G
Sbjct: 285 ETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG----------- 333
Query: 164 MSEPGP-ACLIWLPLLHRLTAVESTSHPIACDA-------CGRANFVGFRYRCAKCGNFQ 215
P P + L V T+ + G N V
Sbjct: 334 --VPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV------------- 378
Query: 216 MCQECFWWGRVSG------GHNLE-HEVKENHPVNKLVTRYANHFAVFRKKLKPTIYHGF 268
VSG G NL + K +++ +R F ++ K + F
Sbjct: 379 ----------VSGPPQSLYGLNLTLRKAKAPSGLDQ--SR-----IPFSER-KLKFSNRF 420
Query: 269 L 269
L
Sbjct: 421 L 421
Score = 36.2 bits (83), Expect = 0.011
Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 57/181 (31%)
Query: 19 AIELQSDVSVARFETLLS-------------SL--YHNLNKRLPVSQQVHV-EVLS---- 58
A+ L + A FE L S SL Y L + +V+S
Sbjct: 1735 ALTL---MEKAAFEDLKSKGLIPADATFAGHSLGEYAAL---------ASLADVMSIESL 1782
Query: 59 -------GLLLNWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQLCDCNGH 111
G+ + A + LGR I + + + + L+Y+ ++ G
Sbjct: 1783 VEVVFYRGMTMQ---VAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW 1839
Query: 112 LV--AWKFN-EYLQDVLA-IPAAVLESPSFSYTDTLAQEI-FSGNGKVTVNDFMDTMMSE 166
LV +N E Q V A A+ DT+ + F K+ + + ++ E
Sbjct: 1840 LVEIV-NYNVENQQYVAAGDLRAL---------DTVTNVLNFIKLQKIDIIELQKSLSLE 1889
Query: 167 P 167
Sbjct: 1890 E 1890
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal
binding protein; NMR {Saccharomyces cerevisiae} SCOP:
a.39.1.5 PDB: 2ju0_A
Length = 190
Score = 37.9 bits (88), Expect = 0.001
Identities = 21/111 (18%), Positives = 48/111 (43%), Gaps = 9/111 (8%)
Query: 65 LLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQLCDC--NGHLVAWKFNEYLQ 122
L + + ++ G I L+T G L +KL + F +L D +G++ + +
Sbjct: 68 LFTVFDKDNNGFIHFEEFITVLSTTSRGTLEEKLSWAF-ELYDLNHDGYITFDEMLTIVA 126
Query: 123 DVLAIPAA-VLESPSFSYTDTLAQEIFS-----GNGKVTVNDFMDTMMSEP 167
V + + V + + + ++IF +G +T+++F + +P
Sbjct: 127 SVYKMMGSMVTLNEDEATPEMRVKKIFKLMDKNEDGYITLDEFREGSKVDP 177
>2l2e_A Calcium-binding protein NCS-1; NCS1P, myristoylated, metal binding
protein; HET: MYR; NMR {Schizosaccharomyces pombe}
Length = 190
Score = 37.9 bits (88), Expect = 0.001
Identities = 22/111 (19%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 65 LLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQLCDCN--GHLVAWKFNEYLQ 122
+ + + + G I AL+ G+L DKL + F QL D + G + + +
Sbjct: 68 VFNVFDADKNGYIDFKEFICALSVTSRGELNDKLIWAF-QLYDLDNNGLISYDEMLRIVD 126
Query: 123 DVLAIPAAVLESPSFSYT-DTLAQEIFS-----GNGKVTVNDFMDTMMSEP 167
+ + ++++ P T + +IF+ +G++T+ +F + +P
Sbjct: 127 AIYKMVGSMVKLPEDEDTPEKRVNKIFNMMDKNKDGQLTLEEFCEGSKRDP 177
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding
domain, PDI-like protein, structural genomics; NMR
{Arabidopsis thaliana} SCOP: g.49.1.3
Length = 89
Score = 36.0 bits (83), Expect = 0.002
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 4/42 (9%)
Query: 179 HRLTAVESTSHPIACDACGRANFVGFRYRCAKCGNFQMCQEC 220
H L CD C + Y C +C +F + +C
Sbjct: 38 HELELT--RVQVYTCDKCEEE-GTIWSYHCDEC-DFDLHAKC 75
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 36.6 bits (84), Expect = 0.005
Identities = 13/92 (14%), Positives = 36/92 (39%), Gaps = 7/92 (7%)
Query: 84 VALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLA-IPAAVLESPSFSYTD 141
V L+ + G + +KL++ F+ + +G + + ++ + +
Sbjct: 153 VGLSILLRGTVHEKLKWAFNLYDINKDGCITKEEMLAIMKSIYDMMGRHTYPILREDAPL 212
Query: 142 TLAQEIFS-----GNGKVTVNDFMDTMMSEPG 168
+ F +G VT+++F++T +
Sbjct: 213 EHVERFFQKMDRNQDGVVTIDEFLETCQKDEN 244
>1g8i_A Frequenin, neuronal calcium sensor 1; calcium binding-protein,
EF-hand, calcium ION, metal binding protein; HET: 1PE
P6G; 1.90A {Homo sapiens} SCOP: a.39.1.5 PDB: 2lcp_A
Length = 190
Score = 36.4 bits (84), Expect = 0.005
Identities = 24/112 (21%), Positives = 49/112 (43%), Gaps = 9/112 (8%)
Query: 65 LLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQLCDCN--GHLVAWKFNEYLQ 122
+ + + GRI AL+ G L +KLR+ F +L D + G++ + + +
Sbjct: 68 VFNVFDENKDGRIEFSEFIQALSVTSRGTLDEKLRWAF-KLYDLDNDGYITRNEMLDIVD 126
Query: 123 DVLAIPAAVLESPSFSYT-DTLAQEIFS-----GNGKVTVNDFMDTMMSEPG 168
+ + +E P T + IF+ +GK+T+ +F + ++P
Sbjct: 127 AIYQMVGNTVELPEEENTPEKRVDRIFAMMDKNADGKLTLQEFQEGSKADPS 178
>2d8n_A Recoverin; structural genomics, NPPSFA, national project on protein
STR and functional analyses, riken structural
genomics/proteomi initiative; 2.20A {Homo sapiens} PDB:
2i94_A 1iku_A* 1jsa_A* 1omr_A 1rec_A 1la3_A* 1omv_A
2het_A
Length = 207
Score = 36.1 bits (83), Expect = 0.006
Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 9/113 (7%)
Query: 65 LLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQD 123
+ ++ G + +AL +GK KL + FS D NG + + E +
Sbjct: 76 VFRSFDSNLDGTLDFKEYVIALHMTTAGKTNQKLEWAFSLYDVDGNGTISKNEVLEIVMA 135
Query: 124 VLAIPAAVLESPSFSYTDT---LAQEIFS-----GNGKVTVNDFMDTMMSEPG 168
+ + +T A++I+ + K+T +F++ ++
Sbjct: 136 IFKMITPEDVKLLPDDENTPEKRAEKIWKYFGKNDDDKLTEKEFIEGTLANKE 188
>2r2i_A Guanylyl cyclase-activating protein 1; EF hand, GCAP, guanylate
cyclase activating protein, GCAP1, GCAP-1, calcium,
lipoprotein, myristate; HET: MYR; 2.00A {Gallus gallus}
Length = 198
Score = 35.9 bits (83), Expect = 0.006
Identities = 21/94 (22%), Positives = 42/94 (44%), Gaps = 18/94 (19%)
Query: 84 VALATMCSGKLMDKLRYIFSQLCDCNGHLVAWKFNEYL--QDVLAIPAAVLESPSFSYTD 141
AL+ + GK+ KLR+ F +L D +G N + ++L I A+ +
Sbjct: 76 AALSLVLKGKVDQKLRWYF-KLYDVDG-------NGCIDRGELLNIIKAIRAINRCNEAM 127
Query: 142 T---LAQEIFS-----GNGKVTVNDFMDTMMSEP 167
T +F G+G++++ +FM+ + +
Sbjct: 128 TAEEFTNMVFDKIDINGDGELSLEEFMEGVQKDE 161
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.0 bits (82), Expect = 0.014
Identities = 48/349 (13%), Positives = 93/349 (26%), Gaps = 123/349 (35%)
Query: 4 DIWN--VIEAFRENGLNAIELQSDVSVARFETLLSSLYHNLNKRLPVSQQVHV------- 54
++ N AF ++S + LL++ + + L + H+
Sbjct: 252 NVQNAKAWNAF------------NLSC---KILLTTRFKQVTDFLSAATTTHISLDHHSM 296
Query: 55 -----EVLSGLLLNWLLSAYSVESLGR----IRVFSIKVALATMCSGKLM---------- 95
EV S LLL +L + L R + + +A L
Sbjct: 297 TLTPDEVKS-LLLKYLDC--RPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNWKHVNC 352
Query: 96 DKLRYIFSQLCDCNGHLVAWKFNEYLQDVLA-------IPAAVLE----SPSFSYTDTLA 144
DKL I L ++ + L+ IP +L S +
Sbjct: 353 DKLTTIIES---SLNVLEPAEYRKMFDR-LSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 145 QEIFS--------GNGKVTVND-FMDTMMSEPGPACLIWLPLLHRLTAVESTS------- 188
++ +++ +++ + LHR + V+ +
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLEN------EYALHR-SIVDHYNIPKTFDS 461
Query: 189 ------------------HPIACDACGRAN-----FVGFRYRCAKCGNFQMCQECFWWGR 225
H + R F+ FR+ K + + W
Sbjct: 462 DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK-----IRHDSTAWNA 516
Query: 226 VSGGHNLEHEVK-------ENHPVNKLVTRYANHFAVFRKKLKPTIYHG 267
N ++K +N P R N F K++ +
Sbjct: 517 SGSILNTLQQLKFYKPYICDNDPKY---ERLVNAILDFLPKIEENLICS 562
Score = 27.1 bits (59), Expect = 7.3
Identities = 14/93 (15%), Positives = 27/93 (29%), Gaps = 12/93 (12%)
Query: 31 FETLLSSLYHNLNKRLPVSQQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSIKVALATMC 90
FET + L V + V+ V+ + + + S + +
Sbjct: 9 FET--GEHQYQYKDILSVFEDAFVDNFD---------CKDVQDMPK-SILSKEEIDHIIM 56
Query: 91 SGKLMDKLRYIFSQLCDCNGHLVAWKFNEYLQD 123
S + +F L +V E L+
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand,
transport protein; 2.00A {Rattus norvegicus} SCOP:
a.39.1.5 PDB: 2nz0_A 2i2r_E
Length = 183
Score = 34.8 bits (80), Expect = 0.015
Identities = 16/111 (14%), Positives = 44/111 (39%), Gaps = 7/111 (6%)
Query: 65 LLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQD 123
L +A+ G ++ AL+ + G + +KLR+ F+ + +G++ + + ++
Sbjct: 61 LFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKA 120
Query: 124 VLAI-PAAVLESPSFSYTDTLAQEIFS-----GNGKVTVNDFMDTMMSEPG 168
+ + F +G VT+++F+++ +
Sbjct: 121 IYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESXQEDDN 171
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens} SCOP:
a.39.1.5
Length = 224
Score = 35.0 bits (80), Expect = 0.016
Identities = 16/110 (14%), Positives = 44/110 (40%), Gaps = 7/110 (6%)
Query: 65 LLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQD 123
L +A+ G ++ AL+ + G + +KLR+ F+ + +G++ + + ++
Sbjct: 94 LFNAFDTTQTGSVKFEDFVTALSILLRGTVHEKLRWTFNLYDINKDGYINKEEMMDIVKA 153
Query: 124 VLAI-PAAVLESPSFSYTDTLAQEIFS-----GNGKVTVNDFMDTMMSEP 167
+ + F +G VT+++F+++ +
Sbjct: 154 IYDMMGKYTYPVLKEDTPRQHVDVFFQKMDKNKDGIVTLDEFLESCQEDD 203
>1bjf_A Neurocalcin delta; calcium-binding, myristoylation, neuronal
specific guanylate cyclase activator; 2.40A {Bos taurus}
SCOP: a.39.1.5
Length = 193
Score = 34.4 bits (79), Expect = 0.021
Identities = 22/93 (23%), Positives = 48/93 (51%), Gaps = 9/93 (9%)
Query: 84 VALATMCSGKLMDKLRYIFSQLCDCN--GHLVAWKFNEYLQDVLAIPAAVLESPSFSYT- 140
+AL+ GKL KL++ F + D + G++ + E +Q + + ++V++ P T
Sbjct: 87 IALSVTSRGKLEQKLKWAF-SMYDLDGNGYISKAEMLEIVQAIYKMVSSVMKMPEDESTP 145
Query: 141 DTLAQEIFS-----GNGKVTVNDFMDTMMSEPG 168
+ ++IF +GK+++ +F+ S+P
Sbjct: 146 EKRTEKIFRQMDTNRDGKLSLEEFIRGAKSDPS 178
>1jba_A GCAP-2, protein (guanylate cyclase activating protein 2); EF-hand,
calcium-binding protein, guanylyl cyclase regulation,
lyase; NMR {Bos taurus} SCOP: a.39.1.5
Length = 204
Score = 34.4 bits (79), Expect = 0.023
Identities = 16/96 (16%), Positives = 38/96 (39%), Gaps = 12/96 (12%)
Query: 84 VALATMCSGKLMDKLRYIFSQL-CDCNGHLVAWKFNEYLQDVLAI------PAAVLESPS 136
AL + G L KL++ F D NG + + + ++ + + +
Sbjct: 83 AALNLVLRGTLEHKLKWTFKIYDKDRNGCIDRQELLDIVESIYKLKKACSVEVEAEQQGK 142
Query: 137 FSYTDTLAQEIFS-----GNGKVTVNDFMDTMMSEP 167
+ + IF G+G++++N+F++ +
Sbjct: 143 LLTPEEVVDRIFLLVDENGDGQLSLNEFVEGARRDK 178
>3dd4_A KV channel-interacting protein 4; EF-hands protein, ION transport,
ionic channel, membrane, PO potassium channel, potassium
transport, transport; 3.00A {Mus musculus} PDB: 2e6w_A
Length = 229
Score = 34.5 bits (79), Expect = 0.023
Identities = 18/93 (19%), Positives = 36/93 (38%), Gaps = 11/93 (11%)
Query: 84 VALATMCSGKLMDKLRYIFSQLCDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTD-- 141
L+ + G + +KL + F L D N K E L + AI + + +
Sbjct: 126 KGLSILLRGTVQEKLNWAF-NLYDINKDGYITK-EEMLDIMKAIYDMMGKCTYPVLKEDA 183
Query: 142 --TLAQEIFS-----GNGKVTVNDFMDTMMSEP 167
+ F +G VT+++F+++ +
Sbjct: 184 PRQHVETFFQKMDKNKDGVVTIDEFIESCQKDE 216
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol
protease, UBL conjugation pathway, metal-binding,
zinc-finger,structural genomics; 2.80A {Homo sapiens}
Length = 854
Score = 34.9 bits (79), Expect = 0.026
Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 5/65 (7%)
Query: 193 CDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEVKENHPV-NKLVTRYAN 251
C C + + G+ +C ++ G H +EH + +P+ KL T +
Sbjct: 218 CSKCDMRENL---WLNLTDGSI-LCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPD 273
Query: 252 HFAVF 256
V+
Sbjct: 274 GADVY 278
>2ggz_A Guanylyl cyclase-activating protein 3; EF hand, guanylate cyclase
activating protein, GCAP, GCAP3, GCAP-3, lyase
activator; 3.00A {Homo sapiens}
Length = 211
Score = 32.8 bits (75), Expect = 0.076
Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 21/96 (21%)
Query: 84 VALATMCSGKLMDKLRYIFSQLCDCNGHLVAWKFNEY-----LQDVL-AIPAAVLESPSF 137
A+ + K+ KL++ F +L D +G N L D+ A+ A +
Sbjct: 81 AAVNLIMQEKMEQKLKWYF-KLYDADG-------NGSIDKNELLDMFMAVQALNGQQTLS 132
Query: 138 SYTDTLAQEIFS-----GNGKVTVNDFMDTMMSEPG 168
+ +F +G++T+ +F++ M +
Sbjct: 133 P--EEFINLVFHKIDINNDGELTLEEFINGMAKDQD 166
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic
transcription factor, zinc binding protein, ring finger;
NMR {Homo sapiens} SCOP: g.49.1.2
Length = 59
Score = 28.3 bits (63), Expect = 0.46
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 184 VESTSHPIACDACGRANFVGFRYRCAKCGNFQMCQEC 220
+E + C C Y CA C N C +C
Sbjct: 9 LEEYNGERFCYGCQGELKDQHVYVCAVCQNV-FCVDC 44
>2zfd_A Calcineurin B-like protein 2; calcium binding protein,
protein-protein complex, ATP-bindin kinase,
nucleotide-binding; 1.20A {Arabidopsis thaliana} SCOP:
a.39.1.5 PDB: 1uhn_A
Length = 226
Score = 30.2 bits (68), Expect = 0.53
Identities = 21/108 (19%), Positives = 41/108 (37%), Gaps = 12/108 (11%)
Query: 85 ALATMCS-GKLMDKLRYIFSQLCDCN--GHLVAWKFNEYLQDVLAIPAAVLESPSFSYTD 141
AL+ + DK+ + F QL D G + + E Q V+A A + + +
Sbjct: 110 ALSVFHPNAPIDDKIHFSF-QLYDLKQQGFI---ERQEVKQMVVATLAESGMNLKDTVIE 165
Query: 142 TLAQEIFS-----GNGKVTVNDFMDTMMSEPGPACLIWLPLLHRLTAV 184
+ + F +GK+ ++ ++ P + L L +T
Sbjct: 166 DIIDKTFEEADTKHDGKIDKEEWRSLVLRHPSLLKNMTLQYLKDITTT 213
>2g45_A Ubiquitin carboxyl-terminal hydrolase 5; zinc finger, hydrolase;
1.99A {Homo sapiens} SCOP: g.44.1.5 PDB: 2g43_A 2l80_A
Length = 129
Score = 29.2 bits (65), Expect = 0.63
Identities = 13/65 (20%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 193 CDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEVKENHPVN-KLVTRYAN 251
C C + + G +C ++ G H +EH + +P+ KL T +
Sbjct: 37 CSKCDMRENL---WLNLTDG-SILCGRRYFDGSGGNNHAVEHYRETGYPLAVKLGTITPD 92
Query: 252 HFAVF 256
V+
Sbjct: 93 GADVY 97
>1gjy_A Sorcin, CP-22, V19; calcium binding, calcium-binding,
phosphorylation; 2.2A {Chinese hamster} SCOP: a.39.1.8
Length = 167
Score = 29.7 bits (67), Expect = 0.65
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 95 MDKLRYIFSQLCDCNGHLVAWKFNEYLQDVLAIPAAVLESPSFSYTDTLAQEIF----SG 150
MD L F+ + +G + A +E LQ L F+ +T +
Sbjct: 1 MDPLYGYFASVAGQDGQIDA---DE-LQRCLTQSGIAGGYKPFN-LETCRLMVSMLDRDM 55
Query: 151 NGKVTVNDFMDTMMSE 166
+G + N+F +
Sbjct: 56 SGTMGFNEFKELWAVL 71
>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A
{Rhodobacter capsulatus}
Length = 155
Score = 29.4 bits (66), Expect = 0.82
Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 179 HRLTAVESTSHPIACDACGRANFV-----GFRYRCAKCGN 213
H + A + S + C ACG+AN V +C CG
Sbjct: 3 HMMGAKMAESLRLTCLACGQANKVPSDRLAAGPKCGICGA 42
>2r7r_A RNA-dependent RNA polymerase; viral protein, RNA-dependent RNA
polymerase, single subunit polymerase fold, fingers,
PALM, thumb; 2.60A {Simian rotavirus} PDB: 2r7q_A 2r7s_A
2r7t_A 2r7u_A 2r7v_A 2r7w_A* 2r7x_A* 2r7o_A
Length = 1095
Score = 30.2 bits (67), Expect = 0.84
Identities = 18/103 (17%), Positives = 37/103 (35%), Gaps = 1/103 (0%)
Query: 61 LLNWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQLCDCNGHLVAWKFNEY 120
+L ++ SV G +R+F + L T + K+ D +I + + F
Sbjct: 732 ILTKIMQMTSVAITGSLRLFPSERVLTTNSTFKVFDSEDFIIEYGTTVDEVYIQRAFMSL 791
Query: 121 LQDVLAIPAAVLESPSF-SYTDTLAQEIFSGNGKVTVNDFMDT 162
I + S +F +Y L++++ + T
Sbjct: 792 SSQKSGIADEIAASSTFKNYVTRLSEQLLFSKNNIVSRGIALT 834
>3c5k_A HD6, histone deacetylase 6; HDAC6, zinc finger, actin-binding,
chromatin regulator, cytoplasm, hydrolase,
metal-binding, nucleus, phosphoprotein; 1.55A {Homo
sapiens} PDB: 3gv4_A 3phd_A
Length = 109
Score = 28.5 bits (63), Expect = 0.87
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 207 RCAKCGNFQMCQECFWW--GRVSGGHNLEHEVKENHPV 242
C +C C+ GR GH L+H HP+
Sbjct: 29 DCGTIQENWVCLSCYQVYCGRYINGHMLQHHGNSGHPL 66
>3opy_I 6-phosphofructo-1-kinase gamma-subunit; ATP binding,
fructose-6-phosphate bindi magnesium binding, citrate
binding, ADP binding; HET: ATP; 3.05A {Pichia pastoris}
Length = 351
Score = 29.3 bits (65), Expect = 1.3
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 6/31 (19%)
Query: 231 NLEHEVKE------NHPVNKLVTRYANHFAV 255
NL HE +E N PV+KL+T Y N++ V
Sbjct: 50 NLAHETQEFSRKNDNAPVDKLLTNYYNNYEV 80
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled
coil, cytoplasm, cytoskeleton, disease mutation, ligase,
metal-binding; NMR {Homo sapiens}
Length = 101
Score = 28.0 bits (62), Expect = 1.4
Identities = 9/49 (18%), Positives = 13/49 (26%), Gaps = 1/49 (2%)
Query: 190 PIACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGGHNLEHEVKE 238
+ C C + C C C EC + H + E
Sbjct: 3 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKATHPNKKPFTGHRLIE 50
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal
subunit, ribosomal protein/RNA complex; 8.70A {Canis
familiaris} SCOP: i.1.1.1
Length = 97
Score = 26.9 bits (59), Expect = 2.5
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 191 IACDACGRANFVGFRYRCAKCGNFQMCQECFWWGR 225
C CG + + C KCG + + W
Sbjct: 17 TLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSA 51
>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics,
niaid, national institute of allergy AN infectious
diseases; 1.75A {Burkholderia thailandensis}
Length = 432
Score = 28.2 bits (63), Expect = 3.3
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 125 LAIPAAVLESPSFSYTDTLAQEIFSGNGKVTVNDFMDTMMSEPG 168
L +P + S + +L EI S G + + +M+ ++ PG
Sbjct: 47 LPVPGPDALAQSEALAASLRAEIASAGGWIPFSRYMERVLYAPG 90
>2ehb_A Calcineurin B-like protein 4; protein complex, Ca(II) IONS bound to
SOS3 (EF-hands 1 and 4 FISL motif; 2.10A {Arabidopsis
thaliana} PDB: 1v1g_A 1v1f_A
Length = 207
Score = 27.8 bits (62), Expect = 3.4
Identities = 15/112 (13%), Positives = 42/112 (37%), Gaps = 20/112 (17%)
Query: 85 ALATMCS-GKLMDKLRYIFSQLCDCNGHLVAWKFNEYL--QDVLAIPAAVLESPSFSYTD 141
+L + +K+++ F +L D ++ +++ + A+L ++
Sbjct: 99 SLGVFHPSAPVHEKVKFAF-KLYDLRQ-------TGFIEREELKEMVVALLHESELVLSE 150
Query: 142 ----TLAQEIFS-----GNGKVTVNDFMDTMMSEPGPACLIWLPLLHRLTAV 184
+ + F +GK+ ++++ D + P + LP L +
Sbjct: 151 DMIEVMVDKAFVQADRKNDGKIDIDEWKDFVSLNPSLIKNMTLPYLKDINRT 202
>1qgi_A Protein (chitosanase); hydrolase, chitosan degradation; HET: GCS
NAG; 1.60A {Bacillus circulans} SCOP: d.2.1.7 PDB:
2d05_A
Length = 259
Score = 27.8 bits (61), Expect = 3.9
Identities = 11/74 (14%), Positives = 18/74 (24%), Gaps = 3/74 (4%)
Query: 149 SGNGKVTVNDFMDTMMS---EPGPACLIWLPLLHRLTAVESTSHPIACDACGRANFVGFR 205
+G + T D D + G + L RL I F G
Sbjct: 68 TGGSRDTHPDGPDLFKAYDAAKGASNPSADGALKRLGINGKMKGSILEIKDSEKVFCGKI 127
Query: 206 YRCAKCGNFQMCQE 219
+ ++
Sbjct: 128 KKLQNDAAWRKAMW 141
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A;
EF-hand like, unknown function; 1.60A {Homo sapiens}
SCOP: a.39.1.7
Length = 105
Score = 26.7 bits (59), Expect = 4.0
Identities = 8/46 (17%), Positives = 15/46 (32%), Gaps = 5/46 (10%)
Query: 130 AVLESPSFSYTDTLAQEIFS-----GNGKVTVNDFMDTMMSEPGPA 170
A+ TD +++ G++ DF+ SE
Sbjct: 48 AICNRRVQILTDEQFDRLWNEMPVNAKGRLKYPDFLSRFSSETAAT 93
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo
sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Length = 183
Score = 27.4 bits (61), Expect = 4.0
Identities = 12/94 (12%), Positives = 27/94 (28%), Gaps = 20/94 (21%)
Query: 87 ATMCSGKLMDKLRYIFSQLCDCNGHLVAWKFNEYL--QDVLAI-PAAVLESPSFSYTD-- 141
+ K Y F ++ D + + L +D+ + E +
Sbjct: 89 VFSDTATPDIKSHYAF-RIFDFDD-------DGTLNREDLSRLVNCLTGEGEDTRLSASE 140
Query: 142 --TLAQEIFS-----GNGKVTVNDFMDTMMSEPG 168
L I +G + +++F + P
Sbjct: 141 MKQLIDNILEESDIDRDGTINLSEFQHVISRSPD 174
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex,
hydrolase-transcription regulator-Pro binding complex,
acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae}
PDB: 3mhh_A 3m99_A
Length = 476
Score = 28.0 bits (62), Expect = 4.0
Identities = 15/75 (20%), Positives = 23/75 (30%), Gaps = 10/75 (13%)
Query: 170 ACLIWLPLLHRLTAVESTSHPIACDACGRANFVGFRYRCAKCGNFQMCQECFWWGRVSGG 229
C +L+ E + + C C N G + C +CG G +
Sbjct: 28 TCNAARYILNHSVPKEKFLNTMKCGTCHEINS-GATFMCLQCGFC---------GCWNHS 77
Query: 230 HNLEHEVKENHPVNK 244
H L H + H
Sbjct: 78 HFLSHSKQIGHIFGI 92
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural
genomics consortium, DH domain, SGC, L binding protein;
2.80A {Homo sapiens}
Length = 434
Score = 28.0 bits (62), Expect = 4.0
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 2/78 (2%)
Query: 145 QEIFSGNGKVTVNDFMDTMMSEPGPACLIWLPLLHRLTAVESTSHPIACDACGRA-NFVG 203
+ + + + + L R + +H + C CG +
Sbjct: 330 GCLSRALPEDYKAQALAAFHHSVEIRERLGVSLGERPPTLVPVTHVMMCMNCGCDFSLTL 389
Query: 204 FRYRCAKCGNFQMCQECF 221
R+ C CG +C+ C
Sbjct: 390 RRHHCHACG-KIVCRNCS 406
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 27.9 bits (62), Expect = 4.4
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 5/39 (12%)
Query: 186 STSHPIACDACGRANFVGF---RYRCAKCGNFQMCQECF 221
S +C AC G YRC +C +EC
Sbjct: 353 SFEETTSCKACQML-LRGTFYQGYRCYRCR-APAHKECL 389
>1fm2_B Glutaryl 7-aminocephalosporanic acid acylase; cephalosporin
acylase, antibiotics, penicillin acylase, N- terminal
hydrolase; 2.00A {Brevundimonas diminuta} SCOP:
d.153.1.2 PDB: 1jvz_B* 1jw0_B 3jtq_B 1ghd_B 1gk0_B
1gk1_B 2ae4_B 3jtr_B 2ae5_B 2ae3_B 1or0_B 2adv_C 2adv_B
Length = 520
Score = 27.5 bits (61), Expect = 5.6
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 144 AQEIFSGNGKVTVNDFMDTMMSEPGPACLIWLPLLHRLTAVESTSHPIACDAC 196
+ + S N +T+ FM S LP L + A P A
Sbjct: 278 SVRLMSENDDLTLERFMALQFSHRAVMADRTLPDL--IPAALIDPDPEVQAAA 328
>1ne5_A Ergtoxin, cnerg1, ERGTX; alpha-helix, triple-stranded beta-sheet;
NMR {Synthetic} SCOP: g.3.7.2 PDB: 1px9_A
Length = 42
Score = 24.7 bits (53), Expect = 6.1
Identities = 9/16 (56%), Positives = 12/16 (75%)
Query: 205 RYRCAKCGNFQMCQEC 220
+ RCAK G +Q CQ+C
Sbjct: 8 KSRCAKYGYYQECQDC 23
>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA
modification enzyme, guanine 26, N(2),N(2)-dimethyltran
structural genomics; 1.90A {Pyrococcus horikoshii} SCOP:
c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*
Length = 378
Score = 27.1 bits (59), Expect = 6.2
Identities = 6/27 (22%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 203 GFRYRCAKCGNFQM-CQECFWWGRVSG 228
G+ Y K G F++ G
Sbjct: 248 GYIYFDDKTGKFELEQGFLPTRPNAYG 274
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10;
zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Length = 70
Score = 25.4 bits (55), Expect = 7.2
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 193 CDACGRANFVGFRYRCAKCGNFQMC-QEC 220
C C RC++C N C +EC
Sbjct: 18 CAYCSAEA----SKRCSRCQNEWYCCREC 42
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.6 bits (58), Expect = 7.7
Identities = 11/62 (17%), Positives = 15/62 (24%), Gaps = 25/62 (40%)
Query: 163 MMSEPGPACLIWLPLLHRLTAVESTSHP-----IACDACGR--ANFVGFRYR-----CAK 210
MM+ + P + C C V R+ CA
Sbjct: 1 MMTRE------------SIDKRAGRRGPNLNIVLTCPECKVYPPKIV-ERFSEGDVVCAL 47
Query: 211 CG 212
CG
Sbjct: 48 CG 49
>3va9_A Sensor histidine kinase; four-alpha-helix bundle, histidine kinase
family 9, phosphotransfer, transferase two-component
system; 2.30A {Rhodopseudomonas palustris}
Length = 164
Score = 26.2 bits (57), Expect = 8.5
Identities = 12/57 (21%), Positives = 20/57 (35%)
Query: 49 SQQVHVEVLSGLLLNWLLSAYSVESLGRIRVFSIKVALATMCSGKLMDKLRYIFSQL 105
Q H++ L L + V LG R+ L +L +++ S L
Sbjct: 76 EQIAHIDELRLLTDMRMAQLGRVVELGPERMREALDILEQARVDRLTERIETSLSVL 132
>2ida_A Hypothetical protein; zinc binding protein, structural genomics,
PSI-2, protein structure initiative; NMR
{Rhodopseudomonas palustris} SCOP: g.44.1.5
Length = 102
Score = 25.7 bits (56), Expect = 8.9
Identities = 13/66 (19%), Positives = 19/66 (28%), Gaps = 9/66 (13%)
Query: 179 HRLTAVESTSHPIACDACGRA-NFVGFRYRCAKCGNFQMCQECFWWGRVSGG-HNLEHEV 236
H T + C+ C + + C CG+ C S H H
Sbjct: 7 HVAGIRTVTPSALGCEECLKIGSPWVHLRICRTCGH-VGC------CDDSPHKHATRHFH 59
Query: 237 KENHPV 242
HP+
Sbjct: 60 ATGHPI 65
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal
transduction, apoptosis, cysteine rich domain, metal
binding protein; NMR {Mus musculus}
Length = 59
Score = 24.4 bits (53), Expect = 9.3
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 179 HRLTAVESTSHPIACDACGRANFVGFRYRCAKCG 212
HR + P CD CGR + RCA C
Sbjct: 11 HRFVELALRGGPGWCDLCGR-EVLRQALRCANCK 43
>1keh_A Precursor of cephalosporin acylase; glutaryl-7-ACA, hydrolase;
2.50A {Brevundimonas diminuta} SCOP: d.153.1.2 PDB:
3s8r_A 1oqz_A
Length = 689
Score = 26.9 bits (59), Expect = 9.7
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 144 AQEIFSGNGKVTVNDFMDTMMSEPGPACLIWLPLLHRLTAVESTSHPIACDAC 196
+ + S N +T+ FM S LP L + A P A
Sbjct: 447 SVRLMSENDDLTLERFMALQFSHRAVMADRTLPDL--IPAALIDPDPEVQAAA 497
>2yfo_A Alpha-galactosidase-sucrose kinase agask; hydrolase; HET: GLA GAL;
1.35A {Ruminococcus gnavus E1} PDB: 2yfn_A*
Length = 720
Score = 27.0 bits (59), Expect = 9.7
Identities = 9/67 (13%), Positives = 15/67 (22%), Gaps = 4/67 (5%)
Query: 211 CGNFQMCQECFWWG--RVSGGHNLEHEVKENHPVNKLVTRYANHFAVFRKKLKPTIYHGF 268
GNF E + R+ G N E + + + +
Sbjct: 254 SGNFSCEAEKDQFNQTRLLLGLNEELFSYPLASGETFTVPEV--ILSYSAEGLSALSQQY 311
Query: 269 LRSQRKR 275
R
Sbjct: 312 HNCIRNH 318
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis,
cysteine rich domain; NMR {Mus musculus}
Length = 72
Score = 24.9 bits (54), Expect = 9.8
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 179 HRLTAVESTSHPIACDACGRANFVGFRYRCAKCG 212
HR + P CD CGR + RCA C
Sbjct: 24 HRFVELALRGGPGWCDLCGR-EVLRQALRCANCK 56
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.137 0.434
Gapped
Lambda K H
0.267 0.0635 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,211,221
Number of extensions: 238352
Number of successful extensions: 854
Number of sequences better than 10.0: 1
Number of HSP's gapped: 839
Number of HSP's successfully gapped: 60
Length of query: 275
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 183
Effective length of database: 4,133,061
Effective search space: 756350163
Effective search space used: 756350163
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (25.5 bits)