BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4951
(1189 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3S3E|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster
pdb|3S3E|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster
pdb|3S3F|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecule Inhibitor
Vanadate
pdb|3S3F|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecule Inhibitor
Vanadate
pdb|3S3H|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Phosphopeptide Substrate
Gp4
pdb|3S3H|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Phosphopeptide Substrate
Gp4
pdb|3S3K|A Chain A, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecular Inhibitor
Para-Nitrocatechol Sulphate
pdb|3S3K|B Chain B, Crystal Structure Of The Catalytic Domain Of Ptp10d From
Drosophila Melanogaster With A Small Molecular Inhibitor
Para-Nitrocatechol Sulphate
Length = 307
Score = 155 bits (391), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 71/92 (77%), Positives = 76/92 (82%)
Query: 1005 TSRPIRLENFAEHYRIMSAXXXXXXXXXXXXLKHVGREQSCTAADLPCNRPKNRFTNILP 1064
SRPI ++NFAEHYR+MSA LKHVGR+Q CT ADLPCNRPKNRFTNILP
Sbjct: 22 ASRPILIKNFAEHYRLMSADSDFRFSEEFEELKHVGRDQPCTFADLPCNRPKNRFTNILP 81
Query: 1065 YDHSRFKLQPVDDEEGSDYINANYVPGHNSPR 1096
YDHSRFKLQPVDD+EGSDYINANYVPGHNSPR
Sbjct: 82 YDHSRFKLQPVDDDEGSDYINANYVPGHNSPR 113
Score = 112 bits (279), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 53/60 (88%), Positives = 53/60 (88%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
RSGT I LDRILQ IN SD VDIFGIVY MRKERVWMVQTEQQYICIHQCLLAVLEG EN
Sbjct: 248 RSGTFITLDRILQQINTSDYVDIFGIVYAMRKERVWMVQTEQQYICIHQCLLAVLEGKEN 307
>pdb|2PI7|A Chain A, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
pdb|2PI7|B Chain B, Structure Of The Catalytic Domain Of The Chick Retinal
Neurite Inhibitor-Receptor Protein Tyrosine Phosphatase
Cryp-2CPTPRO
Length = 312
Score = 90.9 bits (224), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 61/91 (67%)
Query: 1006 SRPIRLENFAEHYRIMSAXXXXXXXXXXXXLKHVGREQSCTAADLPCNRPKNRFTNILPY 1065
+ P++L++F + + M+ LK +G + AADLP NR KNR+TNILPY
Sbjct: 11 TNPVQLDDFDGYIKDMAKDSDYKFSLQFEELKLIGLDIPHFAADLPMNRCKNRYTNILPY 70
Query: 1066 DHSRFKLQPVDDEEGSDYINANYVPGHNSPR 1096
D SR +L +++EEGSDYINANY+PG+NSP+
Sbjct: 71 DFSRVRLVSMNEEEGSDYINANYIPGYNSPQ 101
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+GT IALD +LQ I + VDI G+V MR R+ MVQTE+QYI IHQC+ + + +
Sbjct: 238 RTGTFIALDWLLQHIRDHEFVDILGLVSDMRSYRMSMVQTEEQYIFIHQCVQLMWQKKKQ 297
Query: 1157 QLPLREI 1163
Q + ++
Sbjct: 298 QFCISDV 304
>pdb|2H02|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H02|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2H04|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I3R|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine Phosphatase
Hptpbeta
pdb|2I3R|B Chain B, Engineered Catalytic Domain Of Protein Tyrosine Phosphatase
Hptpbeta
pdb|2I3U|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4E|B Chain B, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2I4G|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With A Sulfamic Acid (Soaking
Experiment)
pdb|2I4H|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain Co-Crystallized With A Sulfamic Acid
Inhibitor
pdb|2I5X|A Chain A, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
pdb|2I5X|B Chain B, Engineering The Ptpbeta Catalytic Domain With Improved
Crystallization Properties
Length = 313
Score = 90.5 bits (223), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 46/93 (49%), Positives = 57/93 (61%)
Query: 1004 ETSRPIRLENFAEHYRIMSAXXXXXXXXXXXXLKHVGREQSCTAADLPCNRPKNRFTNIL 1063
+TS PI++ F H+ + A LK VGR QSC A LP NR KNR+ NIL
Sbjct: 18 KTSCPIKINQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNIL 77
Query: 1064 PYDHSRFKLQPVDDEEGSDYINANYVPGHNSPR 1096
PYD +R KL VDD+ SDYINA+Y+PG+N R
Sbjct: 78 PYDATRVKLSNVDDDPCSDYINASYIPGNNFRR 110
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 42/59 (71%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNE 1155
R+GT IALDRILQ ++ D VDI+G V+ +R RV MVQTE QY+ +HQC+ VL +
Sbjct: 250 RTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRARK 308
>pdb|2G59|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
pdb|2G59|B Chain B, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase From Homo Sapiens
Length = 297
Score = 90.1 bits (222), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 61/91 (67%)
Query: 1006 SRPIRLENFAEHYRIMSAXXXXXXXXXXXXLKHVGREQSCTAADLPCNRPKNRFTNILPY 1065
+ P++L++F + + M+ LK +G + AADLP NR KNR+TNILPY
Sbjct: 4 TNPVQLDDFDAYIKDMAKDSDYKFSLQFEELKLIGLDIPHFAADLPLNRCKNRYTNILPY 63
Query: 1066 DHSRFKLQPVDDEEGSDYINANYVPGHNSPR 1096
D SR +L +++EEG+DYINANY+PG+NSP+
Sbjct: 64 DFSRVRLVSMNEEEGADYINANYIPGYNSPQ 94
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 38/51 (74%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCL 1147
R+GT IALDR+LQ I + VDI G+V MR R+ MVQTE+QYI IHQC+
Sbjct: 231 RTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCV 281
>pdb|2GJT|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptpro
pdb|2GJT|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptpro
Length = 295
Score = 90.1 bits (222), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 42/89 (47%), Positives = 60/89 (67%)
Query: 1008 PIRLENFAEHYRIMSAXXXXXXXXXXXXLKHVGREQSCTAADLPCNRPKNRFTNILPYDH 1067
P++L++F + + M+ LK +G + AADLP NR KNR+TNILPYD
Sbjct: 4 PVQLDDFDAYIKDMAKDSDYKFSLQFEELKLIGLDIPHFAADLPLNRCKNRYTNILPYDF 63
Query: 1068 SRFKLQPVDDEEGSDYINANYVPGHNSPR 1096
SR +L +++EEG+DYINANY+PG+NSP+
Sbjct: 64 SRVRLVSMNEEEGADYINANYIPGYNSPQ 92
Score = 67.8 bits (164), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/67 (47%), Positives = 44/67 (65%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+GT IALDR+LQ I + VDI G+V MR R+ MVQTE+QYI IHQC+ + +
Sbjct: 229 RTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQLMWMKKKQ 288
Query: 1157 QLPLREI 1163
Q + ++
Sbjct: 289 QFCISDV 295
>pdb|2AHS|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Tyrosine
Receptor Phosphatase Beta
pdb|2AHS|B Chain B, Crystal Structure Of The Catalytic Domain Of Human Tyrosine
Receptor Phosphatase Beta
Length = 295
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/83 (50%), Positives = 50/83 (60%)
Query: 1014 FAEHYRIMSAXXXXXXXXXXXXLKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQ 1073
F H+ + A LK VGR QSC A LP NR KNR+ NILPYD +R KL
Sbjct: 12 FEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNILPYDATRVKLS 71
Query: 1074 PVDDEEGSDYINANYVPGHNSPR 1096
VDD+ SDYINA+Y+PG+N R
Sbjct: 72 NVDDDPCSDYINASYIPGNNFRR 94
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 42/59 (71%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNE 1155
R+GT IALDRILQ ++ D VDI+G V+ +R RV MVQTE QY+ +HQC+ VL +
Sbjct: 234 RTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRARK 292
>pdb|2H03|A Chain A, Structural Studies Of Protein Tyrosine Phosphatase Beta
Catalytic Domain In Complex With Inhibitors
pdb|2HC1|A Chain A, Engineered Catalytic Domain Of Protein Tyrosine Phosphatase
Hptpbeta.
pdb|2HC2|A Chain A, Engineered Protein Tyrosine Phosphatase Beta Catalytic
Domain
Length = 291
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 44/93 (47%), Positives = 54/93 (58%), Gaps = 5/93 (5%)
Query: 1004 ETSRPIRLENFAEHYRIMSAXXXXXXXXXXXXLKHVGREQSCTAADLPCNRPKNRFTNIL 1063
+TS PI++ F H+ + A LK VGR QSC A LP NR KNR+ NIL
Sbjct: 4 KTSCPIKINQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYNNIL 63
Query: 1064 PYDHSRFKLQPVDDEEGSDYINANYVPGHNSPR 1096
PYD +R KL GSDYINA+Y+PG+N R
Sbjct: 64 PYDATRVKLSG-----GSDYINASYIPGNNFRR 91
Score = 68.9 bits (167), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 42/59 (71%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNE 1155
R+GT IALDRILQ ++ D VDI+G V+ +R RV MVQTE QY+ +HQC+ VL +
Sbjct: 231 RTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRARK 289
>pdb|2NZ6|A Chain A, Crystal Structure Of The Ptprj Inactivating Mutant C1239s
Length = 316
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 995 NMSLQDSIVETSRPIRLENFAEHYRIMSAXXXXXXXXXXXXLKHVGREQSCTAADLPCNR 1054
++ ++ ++ + IR+ENF +++ A LK VG Q AA+L NR
Sbjct: 12 DLGTENLYFQSMKLIRVENFEAYFKKQQADSNCGFAEEYEDLKLVGISQPKYAAELAENR 71
Query: 1055 PKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPR 1096
KNR+ N+LPYD SR KL V DYINANY+PG++S +
Sbjct: 72 GKNRYNNVLPYDISRVKLS-VQTHSTDDYINANYMPGYHSKK 112
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 43/60 (71%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+GT IA+DR++ I + + VD++GIVY +R R MVQTE QY+ ++QC+L ++ ++
Sbjct: 250 RTGTFIAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLNQCVLDIVRSQKD 309
>pdb|2CFV|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Receptor Type J
Length = 316
Score = 71.2 bits (173), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 39/102 (38%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 995 NMSLQDSIVETSRPIRLENFAEHYRIMSAXXXXXXXXXXXXLKHVGREQSCTAADLPCNR 1054
++ ++ ++ + IR+ENF +++ A LK VG Q AA+L NR
Sbjct: 12 DLGTENLYFQSMKLIRVENFEAYFKKQQADSNCGFAEEYEDLKLVGISQPKYAAELAENR 71
Query: 1055 PKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPR 1096
KNR+ N+LPYD SR KL V DYINANY+PG++S +
Sbjct: 72 GKNRYNNVLPYDISRVKLS-VQTHSTDDYINANYMPGYHSKK 112
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 43/60 (71%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+GT IA+DR++ I + + VD++GIVY +R R MVQTE QY+ ++QC+L ++ ++
Sbjct: 250 RTGTFIAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLNQCVLDIVRSQKD 309
>pdb|3I36|A Chain A, Crystal Structure Of Rat Protein Tyrosine Phosphatase Eta
Catalytic Domain
Length = 342
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 40/112 (35%), Positives = 58/112 (51%), Gaps = 1/112 (0%)
Query: 985 RKTTESRNADNMSLQDSIVETSRPIRLENFAEHYRIMSAXXXXXXXXXXXXLKHVGREQS 1044
RK + + +S + S+ IR+ENF +++ A LK +G
Sbjct: 2 RKKRKDAKNNEVSFSQIKPKKSKLIRVENFEAYFKKQQADSNCGFAEEYEDLKLIGISLP 61
Query: 1045 CTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPR 1096
AA++ NR KNR+ N+LPYD SR KL V DYINANY+PG++S +
Sbjct: 62 KYAAEIAENRGKNRYNNVLPYDISRVKLS-VQTHSTDDYINANYMPGYHSKK 112
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 43/60 (71%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+GT IA+DR++ I + + VD++GIVY +R R MVQTE QY+ ++QC+L ++ ++
Sbjct: 250 RTGTFIAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLNQCVLDIIRAQKD 309
>pdb|2FH7|A Chain A, Crystal Structure Of The Phosphatase Domains Of Human Ptp
Sigma
Length = 595
Score = 67.4 bits (163), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 40/108 (37%), Positives = 59/108 (54%), Gaps = 6/108 (5%)
Query: 996 MSLQDSIVETSRPIRLENFAEHYRIMSAXXXXXXXXXXXXLKHVGREQSCTAADLPCNRP 1055
MSL+ + + PI + + AEH + A + G++ + ++L N+P
Sbjct: 1 MSLESML--SHPPIPIADMAEHTERLKANDSLKLSQEYESID-PGQQFTWEHSNLEVNKP 57
Query: 1056 KNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRRSGTLIA 1103
KNR+ N++ YDHSR LQP++ GSDYINANYV G+ RR IA
Sbjct: 58 KNRYANVIAYDHSRVILQPIEGIMGSDYINANYVDGY---RRQNAYIA 102
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 1047 AADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPR 1096
+A+LPCN+ KNR NI+PY+ +R LQP+ EGSDYINA+++ G+ +
Sbjct: 338 SANLPCNKFKNRLVNIMPYESTRVCLQPIRGVEGSDYINASFIDGYRQQK 387
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+G I +D +L+ I VD++G V MR +R +MVQTE QY IH+ LL +
Sbjct: 234 RTGCFIVIDAMLERIKPEKTVDVYGHVTLMRSQRNYMVQTEDQYSFIHEALLEAVGCGNT 293
Query: 1157 QLPLREIH 1164
++P R ++
Sbjct: 294 EVPARSLY 301
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVL 1151
R+G I L +L+ + + VVDIF V +R +R MVQTE +Y +Q L L
Sbjct: 525 RTGVFITLSIVLERMRYEGVVDIFQTVKMLRTQRPAMVQTEDEYQFCYQAALEYL 579
>pdb|3SR9|A Chain A, Crystal Structure Of Mouse Ptpsigma
Length = 583
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/96 (38%), Positives = 53/96 (55%), Gaps = 4/96 (4%)
Query: 1008 PIRLENFAEHYRIMSAXXXXXXXXXXXXLKHVGREQSCTAADLPCNRPKNRFTNILPYDH 1067
PI + + AEH + A + G++ + ++L N+PKNR+ N++ YDH
Sbjct: 13 PIPITDMAEHMERLKANDSLKLSQEYESID-PGQQFTWEHSNLEANKPKNRYANVIAYDH 71
Query: 1068 SRFKLQPVDDEEGSDYINANYVPGHNSPRRSGTLIA 1103
SR LQP++ GSDYINANYV G+ RR IA
Sbjct: 72 SRVILQPLEGIMGSDYINANYVDGY---RRQNAYIA 104
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 1048 ADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPR 1096
A LPCN+ KNR NILPY+ SR LQP+ EGSDYINA+++ G+ +
Sbjct: 341 ASLPCNKFKNRLVNILPYESSRVCLQPIRGVEGSDYINASFIDGYRQQK 389
Score = 56.6 bits (135), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+G I +D +L+ I VD++G V MR +R +MVQTE QY IH+ LL +
Sbjct: 236 RTGCFIVIDAMLERIKTEKTVDVYGHVTLMRSQRNYMVQTEDQYGFIHEALLEAVGCGNT 295
Query: 1157 QLPLREIH 1164
++P R ++
Sbjct: 296 EVPARSLY 303
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLE 1152
R+G I L +L+ + + VVDIF V +R +R MVQTE +Y C A LE
Sbjct: 527 RTGVFITLSIVLERMRYEGVVDIFQTVKVLRTQRPAMVQTEDEY---QFCFQAALE 579
>pdb|1FNF|A Chain A, Fragment Of Human Fibronectin Encompassing Type-Iii
Repeats 7 Through 10
Length = 368
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 146/344 (42%), Gaps = 39/344 (11%)
Query: 140 GSKISYVEIETLNGDSNQMFV--DKTEYVLESLLPGRKYSINVQAVSNGMES-------- 189
G +I+ G+S + V D++ ++L PG +Y+++V V + ES
Sbjct: 33 GYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTII 92
Query: 190 PSFPIIEDLRPIEFG---LNISWKSDVNSRQDNFEVIYN--RNDTITEDPITVVTTDSKL 244
P+ P DLR G + ++W + NF V Y+ +N+ + +++ +D+ +
Sbjct: 93 PAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAE-LSISPSDNAV 151
Query: 245 LLENLYPGAGYSIQVFAISHGLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPVG 304
+L NL PG Y + V ++ S P Q PT + ++N+ V W P
Sbjct: 152 VLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPRA 211
Query: 305 SIFTEYSIRY-------RTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQVNSVSYSVE 357
+I T Y IR+ R ED R+P+ S+ +T++ PG + ++ + +++ E
Sbjct: 212 TI-TGYRIRHHPEHFSGRPRED----RVPHSRNSI--TLTNLTPGTEYVVSIVALNGREE 264
Query: 358 SAHPLQINHTISPNPATYVAALVDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFT 417
S + T+S P +++ + + P + YY +T+ G + E
Sbjct: 265 SPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTV 324
Query: 418 KNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGVTS 461
P K I L PGV Y T+ V+ +S +S
Sbjct: 325 ------PGSKSTAT---ISGLKPGVDYTITVYAVTGRGDSPASS 359
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 96/209 (45%), Gaps = 12/209 (5%)
Query: 436 DQLTPGVKYQFTIRTVSYNLESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQNS 495
D L+PG++Y ++ TV + ES +S +P + + D++ + + P S
Sbjct: 63 DNLSPGLEYNVSVYTVKDDKES--VPISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPPPS 120
Query: 496 ----NHFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTPI 551
N Y +E D V E + + +D V NL PG Y +V +V + STP+
Sbjct: 121 IDLTNFLVRYSPVKNEED--VAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPL 178
Query: 552 QRHDRLYPEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYL--NTEGFLIQNLTLHT- 608
+ + + T I+ ++IT S ++ W +PR + +++ + G ++ H+
Sbjct: 179 RGRQKTGLDSPTGIDFSDITANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSR 238
Query: 609 -SIVIGDLKPHRNYTFTVIVRSGTESSVL 636
SI + +L P Y +++ +G E S L
Sbjct: 239 NSITLTNLTPGTEYVVSIVALNGREESPL 267
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 79/191 (41%), Gaps = 29/191 (15%)
Query: 513 IEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTPIQRHDRLYPE--PITRINATEI 570
+E+ + TF+NL+PG YN +V+TV D S PI D + P P T + T I
Sbjct: 49 LEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPIS--DTIIPAVPPPTDLRFTNI 106
Query: 571 TDTSVSLTWDSPRGEYNAFEVQYLNTEGFLIQNLTLHTSIVIGDL--KPHRNYTFTVIVR 628
++ +TW P ++ FL++ + + +L P N +
Sbjct: 107 GPDTMRVTWAPPPS---------IDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLL 157
Query: 629 SGTESSVLRRSLPVSAIFQTHESLPGK-MDRTIVDTWHFVRFFQAEKFHPIDVQPGDITF 687
GTE V VS++++ HES P + +T +D+ + F D+ T
Sbjct: 158 PGTEYVVS-----VSSVYEQHESTPLRGRQKTGLDSPTGIDFS--------DITANSFTV 204
Query: 688 EWSLPGSEQNG 698
W P + G
Sbjct: 205 HWIAPRATITG 215
Score = 41.6 bits (96), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 92/390 (23%), Positives = 155/390 (39%), Gaps = 45/390 (11%)
Query: 280 KPPTNLTLEKTSSNAVL-VKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVT- 337
PPTNL LE VL V W+ T Y I + L V + ++ T
Sbjct: 3 SPPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTF 62
Query: 338 -DMVPGEKCMIQVNSVSYSVESAHPLQINHTISPN--PAT---YVAALVDASNVTLEFPR 391
++ PG + + V +V ES + I+ TI P P T + D VT P
Sbjct: 63 DNLSPGLEYNVSVYTVKDDKES---VPISDTIIPAVPPPTDLRFTNIGPDTMRVTWA-PP 118
Query: 392 PEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTV 451
P + +LV + + E EL P D +++ L PG +Y ++ +V
Sbjct: 119 PSIDLTNFLVRYSPVKNEEDVAELSIS-----PSDN----AVVLTNLLPGTEYVVSVSSV 169
Query: 452 SYNLESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQNS--------NHFDFYRF 503
ES T L R ++S + + + +S T+ + + +H + +
Sbjct: 170 YEQHES--TPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPRATITGYRIRHHPEHFSG 227
Query: 504 TLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTPIQRHDRLYPEPIT 563
E +P + +T NLTPG Y ++ + +G +P+ + +
Sbjct: 228 RPREDRVP-------HSRNSITLTNLTPGTEYVVSIVAL-NGREESPLLIGQQSTVSDVP 279
Query: 564 R-INATEITDTSVSLTWDSPRGEYNAFEVQYLNTEG-FLIQNLTL---HTSIVIGDLKPH 618
R + T TS+ ++WD+P + + Y T G +Q T+ ++ I LKP
Sbjct: 280 RDLEVVAATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPG 339
Query: 619 RNYTFTVIVRSGTESSVLRRSLPVSAIFQT 648
+YT TV +G S S P+S ++T
Sbjct: 340 VDYTITVYAVTGRGDSPA-SSKPISINYRT 368
>pdb|2C7S|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Kappa At 1.95a Resolution
Length = 313
Score = 65.1 bits (157), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 37/56 (66%)
Query: 1040 GREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
G+ S A NR KNR+ NI+ YDHSR LQPV+D+ SDYINANY+ G+ P
Sbjct: 56 GQSASWDVAKKDQNRAKNRYGNIIAYDHSRVILQPVEDDPSSDYINANYIDGYQRP 111
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 36/67 (53%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+G I +D +L VVDI+ V +R R+ MVQTE+QYI IH +L E
Sbjct: 247 RTGCYIVIDIMLDMAEREGVVDIYNCVKALRSRRINMVQTEEQYIFIHDAILEACLCGET 306
Query: 1157 QLPLREI 1163
+P+ E
Sbjct: 307 AIPVCEF 313
>pdb|2NLK|A Chain A, Crystal Structure Of D1 And D2 Catalytic Domains Of Human
Protein Tyrosine Phosphatase Gamma (D1+d2 Ptprg)
Length = 627
Score = 63.2 bits (152), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+GT I +D +LQ I V++ G + H+R +R ++VQTE+QYI IH LL + G E
Sbjct: 241 RTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKET 300
Query: 1157 QLPLREIH 1164
++ ++H
Sbjct: 301 EVSSNQLH 308
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 10/64 (15%)
Query: 1043 QSCTA--------ADLPCNRPKNRFTNILPYDHSRFKLQPV--DDEEGSDYINANYVPGH 1092
Q CTA ++ P N+ KNR+ NIL YDHSR KL+P+ D + SDYINANYV G+
Sbjct: 31 QRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGY 90
Query: 1093 NSPR 1096
N +
Sbjct: 91 NKAK 94
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 33/48 (68%)
Query: 1045 CTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGH 1092
C +A CN+ KNR ++++P + +R L P+ +G+DYINA+Y+ G+
Sbjct: 342 CFSAQKECNKEKNRNSSVVPSERARVGLAPLPGMKGTDYINASYIMGY 389
Score = 30.4 bits (67), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 39/89 (43%)
Query: 1068 SRFKLQPVDDEEGSDYINANYVPGHNSPRRSGTLIALDRILQSINHSDVVDIFGIVYHMR 1127
S F+L V EE V +G L AL + Q + + + VD+F + +
Sbjct: 503 STFELINVIKEEALTRDGPTIVHDEYGAVSAGMLCALTTLSQQLENENAVDVFQVAKMIN 562
Query: 1128 KERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R + +QY I++ +L+++ EN
Sbjct: 563 LMRPGVFTDIEQYQFIYKAMLSLVSTKEN 591
>pdb|1LAR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of Rptp
Lar
pdb|1LAR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of Rptp
Lar
Length = 575
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 8/96 (8%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+G I +D +L+ + H VDI+G V MR +R +MVQTE QY+ IH+ LL
Sbjct: 222 RTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALLEAATCGHT 281
Query: 1157 QLPLREIH-HNQ-------GYEGLSQPMQFRPLASA 1184
++P R ++ H Q G + ++F+ LAS+
Sbjct: 282 EVPARNLYAHIQKLGQVPPGESVTAMELEFKLLASS 317
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 1047 AADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPR 1096
+A+LPCN+ KNR NI+PY+ +R LQP+ EGSDYINA+++ G+ +
Sbjct: 326 SANLPCNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINASFLDGYRQQK 375
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 28/64 (43%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 1040 GREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRRSG 1099
G++ + ++L N+PKNR+ N++ YDHSR L +D GSDYINANY+ G+ R+
Sbjct: 30 GQQFTWENSNLEVNKPKNRYANVIAYDHSRVILTSIDGVPGSDYINANYIDGY---RKQN 86
Query: 1100 TLIA 1103
IA
Sbjct: 87 AYIA 90
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 31/56 (55%), Gaps = 3/56 (5%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLE 1152
R+G I L +L+ + + VVD+F V +R +R MVQTE QY C A LE
Sbjct: 513 RTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQY---QLCYRAALE 565
>pdb|2H4V|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphatase
Gamma
pdb|2H4V|B Chain B, Crystal Structure Of The Human Tyrosine Receptor Phosphatase
Gamma
Length = 320
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 10/64 (15%)
Query: 1043 QSCTA--------ADLPCNRPKNRFTNILPYDHSRFKLQPV--DDEEGSDYINANYVPGH 1092
Q CTA ++ P N+ KNR+ NIL YDHSR KL+P+ D + SDYINANYV G+
Sbjct: 49 QRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGY 108
Query: 1093 NSPR 1096
N +
Sbjct: 109 NKAK 112
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+GT I +D +LQ I V++ G + H+R +R ++VQTE+QYI IH LL + G E
Sbjct: 259 RTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKET 318
Query: 1157 QL 1158
++
Sbjct: 319 EV 320
>pdb|3QCM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain 1,
In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
pdb|3QCM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain 1,
In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-{[3-({n-[2-
(Methylamino)ethyl]glycyl}amino)phenyl]ethynyl}benzoic
Acid
Length = 310
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 10/64 (15%)
Query: 1043 QSCTA--------ADLPCNRPKNRFTNILPYDHSRFKLQPV--DDEEGSDYINANYVPGH 1092
Q CTA ++ P N+ KNR+ NIL YDHSR KL+P+ D + SDYINANYV G+
Sbjct: 38 QRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGY 97
Query: 1093 NSPR 1096
N +
Sbjct: 98 NKAK 101
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+GT I +D +LQ I V++ G + H+R +R ++VQTE+QYI IH LL + G E
Sbjct: 248 RTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKET 307
Query: 1157 QL 1158
++
Sbjct: 308 EV 309
>pdb|3QCB|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain 1,
Apo
pdb|3QCB|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain 1,
Apo
pdb|3QCC|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain 1,
In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCC|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain 1,
In Complex With Vanadate, Orthorhombic Crystal Form
pdb|3QCD|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain 1,
In Complex With Vanadate, Trigonal Crystal Form
pdb|3QCE|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain 1,
In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCE|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain 1,
In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Soaking
pdb|3QCF|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain 1,
In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCF|B Chain B, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain 1,
In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]thiophene-2-Carboxylic
Acid Via Co-Crystallization
pdb|3QCG|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain 1,
In Complex With
3-[(3-Bromo-4-Chlorobenzyl)sulfanyl]thiophene-2-
Carboxylic Acid
pdb|3QCH|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain 1,
In Complex With
3-[(3,4-Dichlorobenzyl)sulfanyl]-N-(Methylsulfonyl)
Thiophene-2-Carboxamide
pdb|3QCI|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain 1,
In Complex With
N-[(3-Aminophenyl)sulfonyl]-3-[(3,4-Dichlorobenzyl)
Sulfanyl]thiophene-2-Carboxamide
pdb|3QCJ|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain 1,
In Complex With
5-[({3-[(3,4-Dichlorobenzyl)sulfanyl]thiophen-2-
Yl}carbonyl)sulfamoyl]-2-Methoxybenzoic Acid
pdb|3QCK|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain 1,
In Complex With 2-[(3,4-Dichlorobenzyl)sulfanyl]benzoic
Acid
Length = 310
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 10/64 (15%)
Query: 1043 QSCTA--------ADLPCNRPKNRFTNILPYDHSRFKLQPV--DDEEGSDYINANYVPGH 1092
Q CTA ++ P N+ KNR+ NIL YDHSR KL+P+ D + SDYINANYV G+
Sbjct: 38 QRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGY 97
Query: 1093 NSPR 1096
N +
Sbjct: 98 NKAK 101
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+GT I +D +LQ I V++ G + H+R +R ++VQTE+QYI IH LL + G E
Sbjct: 248 RTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKET 307
Query: 1157 QL 1158
++
Sbjct: 308 EV 309
>pdb|2PBN|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma
Length = 313
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 10/64 (15%)
Query: 1043 QSCTA--------ADLPCNRPKNRFTNILPYDHSRFKLQPV--DDEEGSDYINANYVPGH 1092
Q CTA ++ P N+ KNR+ NIL YDHSR KL+P+ D + SDYINANYV G+
Sbjct: 39 QRCTADMNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGY 98
Query: 1093 NSPR 1096
N +
Sbjct: 99 NKAK 102
Score = 60.5 bits (145), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+GT I +D +LQ I V++ G + H+R +R ++VQTE+QYI IH LL + G E
Sbjct: 249 RTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKET 308
Query: 1157 QL 1158
++
Sbjct: 309 EV 310
>pdb|2HY3|A Chain A, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma In Complex With Vanadate
pdb|2HY3|B Chain B, Crystal Structure Of The Human Tyrosine Receptor Phosphate
Gamma In Complex With Vanadate
Length = 313
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 41/64 (64%), Gaps = 10/64 (15%)
Query: 1043 QSCTA--------ADLPCNRPKNRFTNILPYDHSRFKLQPV--DDEEGSDYINANYVPGH 1092
Q CTA ++ P N+ KNR+ NIL YDHSR KL+P+ D + SDYINANYV G+
Sbjct: 39 QRCTADXNITAEHSNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGY 98
Query: 1093 NSPR 1096
N +
Sbjct: 99 NKAK 102
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 39/62 (62%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+GT I +D LQ I V++ G + H+R +R ++VQTE+QYI IH LL + G E
Sbjct: 249 RTGTYIVIDSXLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKET 308
Query: 1157 QL 1158
++
Sbjct: 309 EV 310
>pdb|3QCL|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain 1,
In Complex With
2-[(3,4-Dichlorobenzyl)sulfanyl]-4-(4-Hydroxybut-1-Yn-1-
Yl)benzoic Acid
pdb|3QCN|A Chain A, Human Receptor Protein Tyrosine Phosphatase Gamma, Domain 1,
Trigonal Crystal Form
Length = 310
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 40/62 (64%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+GT I +D +LQ I V++ G + H+R +R ++VQTE+QYI IH LL + G E
Sbjct: 248 RTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKET 307
Query: 1157 QL 1158
++
Sbjct: 308 EV 309
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 28/51 (54%), Positives = 37/51 (72%), Gaps = 2/51 (3%)
Query: 1048 ADLPCNRPKNRFTNILPYDHSRFKLQPV--DDEEGSDYINANYVPGHNSPR 1096
++ P N+ KNR+ NIL YDHSR KL+P+ D + SDYINANYV G+N +
Sbjct: 51 SNHPENKHKNRYINILAYDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAK 101
>pdb|2NV5|A Chain A, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|B Chain B, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
pdb|2NV5|C Chain C, Crystal Structure Of A C-Terminal Phosphatase Domain Of
Rattus Norvegicus Ortholog Of Human Protein Tyrosine
Phosphatase, Receptor Type, D (Ptprd)
Length = 299
Score = 59.7 bits (143), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLL-AVLEGN 1154
R+G I +D +L+ I H VDI+G V MR +R +MVQTE QYI IH LL AV GN
Sbjct: 231 RTGCFIVIDAMLERIKHEKTVDIYGHVTLMRAQRNYMVQTEDQYIFIHDALLEAVTCGN 289
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/64 (40%), Positives = 41/64 (64%), Gaps = 3/64 (4%)
Query: 1040 GREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRRSG 1099
G++ + ++L N+PKNR+ N++ YDHSR L ++ GSDY+NANY+ G+ R+
Sbjct: 39 GQQFTWEHSNLEVNKPKNRYANVIAYDHSRVLLSAIEGIPGSDYVNANYIDGY---RKQN 95
Query: 1100 TLIA 1103
IA
Sbjct: 96 AYIA 99
>pdb|2OOQ|A Chain A, Crystal Structure Of The Human Receptor Phosphatase Ptprt
pdb|2OOQ|B Chain B, Crystal Structure Of The Human Receptor Phosphatase Ptprt
Length = 286
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/57 (49%), Positives = 37/57 (64%)
Query: 1040 GREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPR 1096
G+ S A NR KNR+ NI+ YDHSR +L +D + SDYINANY+ G++ PR
Sbjct: 34 GQTASWDTAKEDENRNKNRYGNIISYDHSRVRLLVLDGDPHSDYINANYIDGYHRPR 90
Score = 53.5 bits (127), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLL-AVLEGN 1154
R+G IA+D +L + VVDIF V +R +RV +VQTE+QY+ +H +L A L GN
Sbjct: 225 RTGCFIAIDTMLDMAENEGVVDIFNCVRELRAQRVNLVQTEEQYVFVHDAILEACLCGN 283
>pdb|1RPM|A Chain A, Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
pdb|1RPM|B Chain B, Human Receptor Protein Tyrosine Phosphatase Mu, Domain 1
Length = 278
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 46/82 (56%), Gaps = 7/82 (8%)
Query: 1053 NRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRRSGTLIALDRILQSIN 1112
NR KNR+ NI+ YDHSR +LQ ++ + SDYIN NY+ G++ P IA +Q
Sbjct: 45 NRMKNRYGNIIAYDHSRVRLQTIEGDTNSDYINGNYIDGYHRPNH---YIATQGPMQET- 100
Query: 1113 HSDVVDIFGIVYHMRKERVWMV 1134
+ D + +V+H + MV
Sbjct: 101 ---IYDFWRMVWHENTASIIMV 119
Score = 48.1 bits (113), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 31/52 (59%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLL 1148
R+G I +D +L VVDI+ V +R RV MVQTE+QY+ IH +L
Sbjct: 223 RTGCFIVIDIMLDMAEREGVVDIYNCVRELRSRRVNMVQTEEQYVFIHDAIL 274
>pdb|1YFO|A Chain A, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
pdb|1YFO|B Chain B, Receptor Protein Tyrosine Phosphatase Alpha, Domain 1 From
Mouse
Length = 302
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 1042 EQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRR 1097
+ +C AA N+ KNR+ NILPYDHSR L PV+ SDYINA+++ G+ +
Sbjct: 44 QATCEAASKEENKEKNRYVNILPYDHSRVHLTPVEGVPDSDYINASFINGYQEKNK 99
Score = 50.1 bits (118), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 34/52 (65%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLL 1148
R+GT + +D +L ++ VD++G V +R +R MVQT+ QY+ I+Q LL
Sbjct: 238 RTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALL 289
>pdb|1YGR|A Chain A, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGR|B Chain B, Crystal Structure Of The Tandem Phosphatase Domain Of Rptp
Cd45
pdb|1YGU|A Chain A, Crystal Structure Of The Tandem Phosphatase Domains Of Rptp
Cd45 With A Ptyr Peptide
pdb|1YGU|B Chain B, Crystal Structure Of The Tandem Phosphatase Domains Of Rptp
Cd45 With A Ptyr Peptide
Length = 610
Score = 58.2 bits (139), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+GT I +D L+ + + VD++G V +R++R VQ E QYI IHQ L+ + E
Sbjct: 236 RTGTYIGIDAXLEGLEAENKVDVYGYVVKLRRQRCLXVQVEAQYILIHQALVEYNQFGET 295
Query: 1157 QLPLREIH 1164
++ L E+H
Sbjct: 296 EVNLSELH 303
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 23/50 (46%), Positives = 36/50 (72%)
Query: 1048 ADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRR 1097
A P N+ KNR+ +ILPYD++R +L ++ + GS+YINA+Y+ G PR+
Sbjct: 49 ARKPFNQNKNRYVDILPYDYNRVELSEINGDAGSNYINASYIDGFKEPRK 98
Score = 37.0 bits (84), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 33/57 (57%)
Query: 1093 NSPRRSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLA 1149
+ +++G AL +L+S +VVDIF +V +RK R+ V T +QY ++ + +
Sbjct: 548 DGSQQTGIFCALLNLLESAETEEVVDIFQVVKALRKARLGXVSTFEQYQFLYDVIAS 604
>pdb|3T1W|A Chain A, Structure Of The Four-Domain Fragment Fn7b89 Of Oncofetal
Fibronectin
Length = 375
Score = 56.6 bits (135), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 86/368 (23%), Positives = 151/368 (41%), Gaps = 23/368 (6%)
Query: 280 KPPTNLTLEKTSSNAVL-VKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVT- 337
PPTNL LE VL V W+ T Y I + L V + ++ T
Sbjct: 4 SPPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTF 63
Query: 338 -DMVPGEKCMIQVNSVSYSVESAHPLQINHTISPN-PATYVAALVDASNVTLEF---PRP 392
++ PG + + V +V ES + I+ TI P P + VD ++ ++ P
Sbjct: 64 DNLSPGLEYNVSVYTVKDDKES---VPISDTIIPEVPQLTDLSFVDITDSSIGLRWTPLN 120
Query: 393 EGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVS 452
I Y +T G E F + + + L PG+ Y ++ T+
Sbjct: 121 SSTIIGYRITVVAAGEGIPIFEDFVDSSVG---------YYTVTGLEPGIDYDISVITLI 171
Query: 453 YNLESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQNSNHFDFYRFTLSEPDIPV 512
ES T+L+ +T +++ N T VT P R++ + + V
Sbjct: 172 NGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDV 231
Query: 513 IEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTPIQRHDRLYPEPITRINATEITD 572
E + + +D V NL PG Y +V +V + STP++ + + T I+ ++IT
Sbjct: 232 AELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITA 291
Query: 573 TSVSLTWDSPRGEYNAFEVQYL--NTEGFLIQNLTLHT--SIVIGDLKPHRNYTFTVIVR 628
S ++ W +PR + +++ + G ++ H+ SI + +L P Y +++
Sbjct: 292 NSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVAL 351
Query: 629 SGTESSVL 636
+G E S L
Sbjct: 352 NGREESPL 359
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 82/343 (23%), Positives = 142/343 (41%), Gaps = 44/343 (12%)
Query: 140 GSKISYVEIETLNGDSNQMFV--DKTEYVLESLLPGRKYSINVQAVSNGMES-------- 189
G +I+ G+S + V D++ ++L PG +Y+++V V + ES
Sbjct: 34 GYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTII 93
Query: 190 PSFPIIEDLRPIEF---GLNISWKSDVNSRQDNFEV-IYNRNDTITEDPITVVTTDSKL- 244
P P + DL ++ + + W +S + + + + I PI DS +
Sbjct: 94 PEVPQLTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEGI---PIFEDFVDSSVG 150
Query: 245 --LLENLYPGAGYSIQVFAISHGLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEP 302
+ L PG Y I V + +G S P Q PPT+L + + V W P
Sbjct: 151 YYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPP 210
Query: 303 VGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEV-TDMVPGEKCMIQVNSVSYSVESAHP 361
T + +RY +++ V ++ S A V T+++PG + ++ V+SV Y + P
Sbjct: 211 PSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSV-YEQHESTP 269
Query: 362 LQINHTISPNPATYVAALVDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTK--- 418
L+ + T +D S++T + V W I P AT T +
Sbjct: 270 LRGRQKTGLDSPTG----IDFSDITA---------NSFTVHW--IAPRATITGYRIRHHP 314
Query: 419 -NVTNDP-EDKDKHVH--ILIDQLTPGVKYQFTIRTVSYNLES 457
+ + P ED+ H I + LTPG +Y +I ++ ES
Sbjct: 315 EHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREES 357
>pdb|3OLR|A Chain A, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide 1
pdb|3OLR|B Chain B, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide 1
pdb|3OLR|C Chain C, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide 1
pdb|3OLR|D Chain D, Ptpn22 In Complex With Consensus Phospho-Tyrosine Peptide 1
pdb|3OMH|A Chain A, Crystal Structure Of Ptpn22 In Complex With Skap-Hom Ptyr75
Peptide
pdb|3OMH|B Chain B, Crystal Structure Of Ptpn22 In Complex With Skap-Hom Ptyr75
Peptide
pdb|3OMH|C Chain C, Crystal Structure Of Ptpn22 In Complex With Skap-Hom Ptyr75
Peptide
pdb|3OMH|D Chain D, Crystal Structure Of Ptpn22 In Complex With Skap-Hom Ptyr75
Peptide
Length = 313
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 14/106 (13%)
Query: 1046 TAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRR-------- 1097
T A+ P N KNR+ +ILPYD+SR +L + +E S YINAN++ G P+
Sbjct: 66 TVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPL 125
Query: 1098 SGTLIALDRILQSINHSDVVDIFGIV-YHMRK---ERVWMVQTEQQ 1139
S TL+ R++ +S ++ + + Y M K ER W E Q
Sbjct: 126 STTLLDFWRMIW--EYSVLIIVMACMEYEMGKKKCERYWAEPGEMQ 169
Score = 30.4 bits (67), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 1097 RSGTLIALDRILQSINHSDV---VDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLE 1152
R+G + A+D + + +F ++ MR +R +VQT++QY ++ +L + +
Sbjct: 252 RTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYELVYNAVLELFK 310
>pdb|2QCJ|A Chain A, Native Structure Of Lyp
pdb|2QCJ|B Chain B, Native Structure Of Lyp
pdb|2QCT|A Chain A, Structure Of Lyp With Inhibitor I-C11
pdb|2QCT|B Chain B, Structure Of Lyp With Inhibitor I-C11
Length = 313
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 14/106 (13%)
Query: 1046 TAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRR-------- 1097
T A+ P N KNR+ +ILPYD+SR +L + +E S YINAN++ G P+
Sbjct: 66 TVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPL 125
Query: 1098 SGTLIALDRILQSINHSDVVDIFGIV-YHMRK---ERVWMVQTEQQ 1139
S TL+ R++ +S ++ + + Y M K ER W E Q
Sbjct: 126 STTLLDFWRMIW--EYSVLIIVMACMEYEMGKKKCERYWAEPGEMQ 169
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 1097 RSGTLIALDRILQSINHSDV---VDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEG 1153
R+G + A+D + + +F ++ MR +R +VQT++QY ++ AVLE
Sbjct: 252 RTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYELVYN---AVLEL 308
Query: 1154 NENQL 1158
+ Q+
Sbjct: 309 FKRQM 313
>pdb|3BRH|A Chain A, Protein Tyrosine Phosphatase Ptpn-22 (Lyp) Bound To The
Mono-Phosphorylated Lck Active Site Peptide
pdb|3BRH|B Chain B, Protein Tyrosine Phosphatase Ptpn-22 (Lyp) Bound To The
Mono-Phosphorylated Lck Active Site Peptide
Length = 310
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 14/106 (13%)
Query: 1046 TAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRR-------- 1097
T A+ P N KNR+ +ILPYD+SR +L + +E S YINAN++ G P+
Sbjct: 47 TVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPL 106
Query: 1098 SGTLIALDRILQSINHSDVVDIFGIV-YHMRK---ERVWMVQTEQQ 1139
S TL+ R++ +S ++ + + Y M K ER W E Q
Sbjct: 107 STTLLDFWRMIW--EYSVLIIVMACMEYEMGKKKCERYWAEPGEMQ 150
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 1097 RSGTLIALDRILQSINHSDV---VDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEG 1153
R+G + A+D + + +F ++ MR +R +VQT++QY ++ AVLE
Sbjct: 233 RTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYELVYN---AVLEL 289
Query: 1154 NENQLPLREIHHN 1166
+ Q+ + H+
Sbjct: 290 FKRQMDVIRDKHS 302
>pdb|2P6X|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Ptpn22
pdb|2P6X|B Chain B, Crystal Structure Of Human Tyrosine Phosphatase Ptpn22
Length = 309
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 14/106 (13%)
Query: 1046 TAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRR-------- 1097
T A+ P N KNR+ +ILPYD+SR +L + +E S YINAN++ G P+
Sbjct: 47 TVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPL 106
Query: 1098 SGTLIALDRILQSINHSDVVDIFGIV-YHMRK---ERVWMVQTEQQ 1139
S TL+ R++ +S ++ + + Y M K ER W E Q
Sbjct: 107 STTLLDFWRMIW--EYSVLIIVMACMEYEMGKKKCERYWAEPGEMQ 150
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 1097 RSGTLIALDRILQSINHSDV---VDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEG 1153
R+G + A+D + + +F ++ MR +R +VQT++QY ++ AVLE
Sbjct: 233 RTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYELVYN---AVLEL 289
Query: 1154 NENQLPLREIHHN 1166
+ Q+ + H+
Sbjct: 290 FKRQMDVIRDKHS 302
>pdb|3H2X|A Chain A, Crystal Structure Of The Human Lymphoid Tyrosine Phosphatase
Catalytic Domain
Length = 302
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 55/106 (51%), Gaps = 14/106 (13%)
Query: 1046 TAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRR-------- 1097
T A+ P N KNR+ +ILPYD+SR +L + +E S YINAN++ G P+
Sbjct: 47 TVAEKPKNIKKNRYKDILPYDYSRVELSLITSDEDSSYINANFIKGVYGPKAYIATQGPL 106
Query: 1098 SGTLIALDRILQSINHSDVVDIFGIV-YHMRK---ERVWMVQTEQQ 1139
S TL+ R++ +S ++ + + Y M K ER W E Q
Sbjct: 107 STTLLDFWRMIW--EYSVLIIVMACMEYEMGKKKCERYWAEPGEMQ 150
Score = 30.4 bits (67), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
Query: 1097 RSGTLIALDRILQSINHSDV---VDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEG 1153
R+G + A+D + + +F ++ MR +R +VQT++QY ++ AVLE
Sbjct: 233 RTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYELVYN---AVLEL 289
Query: 1154 NENQLPLREIHHN 1166
+ Q+ + H+
Sbjct: 290 FKRQMDVIRDKHS 302
>pdb|2JJD|A Chain A, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|B Chain B, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|C Chain C, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|D Chain D, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|E Chain E, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
pdb|2JJD|F Chain F, Protein Tyrosine Phosphatase, Receptor Type, E Isoform
Length = 599
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/90 (36%), Positives = 44/90 (48%)
Query: 1008 PIRLENFAEHYRIMSAXXXXXXXXXXXXLKHVGREQSCTAADLPCNRPKNRFTNILPYDH 1067
PI +E+ E RI SA L + + A+ NR KNR+ NILP DH
Sbjct: 9 PIPVEHLEEEIRIRSADDCKQFREEFNSLPSGHIQGTFELANKEENREKNRYPNILPNDH 68
Query: 1068 SRFKLQPVDDEEGSDYINANYVPGHNSPRR 1097
SR L +D SDYINA+Y+ G+ +
Sbjct: 69 SRVILSQLDGIPCSDYINASYIDGYKEKNK 98
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLL 1148
R+GT I +D ++ ++ VD+F V +R +R MVQT+ QY I+Q LL
Sbjct: 236 RTGTFIVIDAMMAMMHAEQKVDVFEFVSRIRNQRPQMVQTDMQYTFIYQALL 287
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%)
Query: 1048 ADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGH 1092
+LP N K R I+PYD +R L +E +DYINA+++ G+
Sbjct: 341 GNLPANMKKARVIQIIPYDFNRVILSMKRGQEYTDYINASFIDGY 385
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQY 1140
R+GT IAL IL+ + ++D+F V +R +R MVQT +QY
Sbjct: 531 RTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQY 574
>pdb|4GH7|B Chain B, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
pdb|4GH7|D Chain D, Crystal Structure Of Anticalin N7a In Complex With
Oncofetal Fibronectin Fragment Fn7b8
Length = 285
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/222 (25%), Positives = 96/222 (43%), Gaps = 20/222 (9%)
Query: 436 DQLTPGVKYQFTIRTVSYNLESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQNS 495
D L+PG++Y ++ TV + ES +S +P + + + S+ LR+TP NS
Sbjct: 64 DNLSPGLEYNVSVYTVKDDKES--VPISDTIIPEVPQLTDLSFVDITDSSIGLRWTPLNS 121
Query: 496 NHFDFYRFTL--SEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTPIQR 553
+ YR T+ + IP+ E + + T L PG Y+ +V T+ +G S P
Sbjct: 122 STIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITLINGGESAPTTL 181
Query: 554 HDRLYPEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEGFLIQNLTLHTSIVIG 613
+ P T + T I ++ +TW P ++ FL++ + +
Sbjct: 182 TQQTAVPPPTDLRFTNIGPDTMRVTWAPPPS---------IDLTNFLVRYSPVKNEEDVA 232
Query: 614 DL--KPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLP 653
+L P N + GTE V VS++++ HES P
Sbjct: 233 ELSISPSDNAVVLTNLLPGTEYVV-----SVSSVYEQHESTP 269
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 104/242 (42%), Gaps = 22/242 (9%)
Query: 140 GSKISYVEIETLNGDSNQMFV--DKTEYVLESLLPGRKYSINVQAVSNGMES-------- 189
G +I+ G+S + V D++ ++L PG +Y+++V V + ES
Sbjct: 34 GYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTII 93
Query: 190 PSFPIIEDLRPIEF---GLNISWKSDVNSRQDNFEV-IYNRNDTITEDPITVVTTDSKL- 244
P P + DL ++ + + W +S + + + + I PI DS +
Sbjct: 94 PEVPQLTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEGI---PIFEDFVDSSVG 150
Query: 245 --LLENLYPGAGYSIQVFAISHGLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEP 302
+ L PG Y I V + +G S P Q PPT+L + + V W P
Sbjct: 151 YYTVTGLEPGIDYDISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPP 210
Query: 303 VGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEV-TDMVPGEKCMIQVNSVSYSVESAHP 361
T + +RY +++ V ++ S A V T+++PG + ++ V+SV Y + P
Sbjct: 211 PSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSV-YEQHESTP 269
Query: 362 LQ 363
L+
Sbjct: 270 LR 271
Score = 37.4 bits (85), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 67/284 (23%), Positives = 111/284 (39%), Gaps = 19/284 (6%)
Query: 280 KPPTNLTLEKTSSNAVL-VKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVT- 337
PPTNL LE VL V W+ T Y I + L V + ++ T
Sbjct: 4 SPPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTF 63
Query: 338 -DMVPGEKCMIQVNSVSYSVESAHPLQINHTISPN-PATYVAALVDASNVTLEF---PRP 392
++ PG + + V +V ES + I+ TI P P + VD ++ ++ P
Sbjct: 64 DNLSPGLEYNVSVYTVKDDKES---VPISDTIIPEVPQLTDLSFVDITDSSIGLRWTPLN 120
Query: 393 EGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVS 452
I Y +T G E F + + + L PG+ Y ++ T+
Sbjct: 121 SSTIIGYRITVVAAGEGIPIFEDFVDSSVG---------YYTVTGLEPGIDYDISVITLI 171
Query: 453 YNLESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQNSNHFDFYRFTLSEPDIPV 512
ES T+L+ +T +++ N T VT P R++ + + V
Sbjct: 172 NGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDV 231
Query: 513 IEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTPIQRHDR 556
E + + +D V NL PG Y +V +V + STP++ +
Sbjct: 232 AELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQK 275
>pdb|3PS5|A Chain A, Crystal Structure Of The Full-Length Human Protein Tyrosine
Phosphatase Shp-1
Length = 595
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 1051 PCNRPKNRFTNILPYDHSRFKLQPVDDE-EGSDYINANYV 1089
P N+ KNR+ NILP+DHSR LQ D GSDYINANY+
Sbjct: 268 PENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYI 307
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 1097 RSGTLIALDRILQSINHSDV---VDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEG 1153
R+GT+I +D ++++I+ + +DI + +R +R MVQTE QY I+ + +E
Sbjct: 459 RTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET 518
Query: 1154 NENQLPLREIHHNQ 1167
+ +L + + Q
Sbjct: 519 TKKKLEVLQSQKGQ 532
>pdb|2B3O|A Chain A, Crystal Structure Of Human Tyrosine Phosphatase Shp-1
Length = 532
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 1051 PCNRPKNRFTNILPYDHSRFKLQPVDDE-EGSDYINANYV 1089
P N+ KNR+ NILP+DHSR LQ D GSDYINANY+
Sbjct: 268 PENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYI 307
Score = 38.5 bits (88), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 1097 RSGTLIALDRILQSINHSDV---VDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEG 1153
R+GT+I +D ++++I+ + +DI + +R +R MVQTE QY I+ + +E
Sbjct: 459 RTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET 518
Query: 1154 NENQLPLREIHHNQ 1167
+ +L + + Q
Sbjct: 519 TKKKLEVLQSQKGQ 532
>pdb|4GRY|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
pdb|4GRZ|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Po4
Length = 288
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 1051 PCNRPKNRFTNILPYDHSRFKLQPVDDE-EGSDYINANYV 1089
P N+ KNR+ NILP+DHSR LQ D GSDYINANY+
Sbjct: 28 PENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYI 67
Score = 37.4 bits (85), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 1097 RSGTLIALDRILQSINHSDV---VDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEG 1153
R+GT+I +D ++++I+ + +DI + +R +R MVQTE QY I+ + +E
Sbjct: 219 RTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET 278
Query: 1154 NENQLPL 1160
+ +L +
Sbjct: 279 TKKKLEV 285
>pdb|1GWZ|A Chain A, Crystal Structure Of The Catalytic Domain Of The Protein
Tyrosine Phosphatase Shp-1
Length = 299
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 1051 PCNRPKNRFTNILPYDHSRFKLQPVDDE-EGSDYINANYV 1089
P N+ KNR+ NILP+DHSR LQ D GSDYINANY+
Sbjct: 26 PENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYI 65
Score = 37.7 bits (86), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 1097 RSGTLIALDRILQSINHSDV---VDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEG 1153
R+GT+I +D ++++I+ + +DI + +R +R MVQTE QY I+ + +E
Sbjct: 217 RTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET 276
Query: 1154 NENQLPLREIHHNQ 1167
+ +L + + Q
Sbjct: 277 TKKKLEVLQSQKGQ 290
>pdb|1FPR|A Chain A, Crystal Structure Of The Complex Formed Between The
Catalytic Domain Of Shp-1 And An In Vitro Peptide
Substrate Py469 Derived From Shps-1
Length = 284
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 1051 PCNRPKNRFTNILPYDHSRFKLQPVDDE-EGSDYINANYV 1089
P N+ KNR+ NILP+DHSR LQ D GSDYINANY+
Sbjct: 26 PENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYI 65
Score = 37.4 bits (85), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 1097 RSGTLIALDRILQSINHSDV---VDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEG 1153
R+GT+I +D ++++I+ + +DI + +R +R MVQTE QY I+ + +E
Sbjct: 217 RTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET 276
Query: 1154 NENQLPL 1160
+ +L +
Sbjct: 277 TKKKLEV 283
>pdb|4GS0|A Chain A, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
pdb|4GS0|B Chain B, Crystal Structure Of Shp1 Catalytic Domain With Jak1
Activation Loop Peptide
Length = 308
Score = 52.0 bits (123), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/40 (62%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Query: 1051 PCNRPKNRFTNILPYDHSRFKLQPVDDE-EGSDYINANYV 1089
P N+ KNR+ NILP+DHSR LQ D GSDYINANY+
Sbjct: 48 PENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYINANYI 87
Score = 37.4 bits (85), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 1097 RSGTLIALDRILQSINHSDV---VDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEG 1153
R+GT+I +D ++++I+ + +DI + +R +R MVQTE QY I+ + +E
Sbjct: 239 RTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET 298
Query: 1154 NENQLPL 1160
+ +L +
Sbjct: 299 TKKKLEV 305
>pdb|1C86|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b (R47v,
D48n) Complexed With 2-(Oxalyl-Amino-4,7-Dihydro-5h-
Thieno[2,3-C]pyran-3-Carboxylic Acid
Length = 298
Score = 51.6 bits (122), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ N+ P+DHSR KL +E +DYINA+ + +
Sbjct: 23 IRHEASDFPCRVAKLPKNKNRNRYVNVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 78
Query: 1096 R 1096
R
Sbjct: 79 R 79
>pdb|1GFY|A Chain A, Residue 259 Is A Key Determinant Of Substrate Specificity Of
Protein-Tyrosine Phosphatase 1b And Alpha
Length = 298
Score = 51.2 bits (121), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ N+ P+DHSR KL +E +DYINA+ + +
Sbjct: 23 IRHEASDFPCRVAKLPKNKNRNRYVNVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 78
Query: 1096 R 1096
R
Sbjct: 79 R 79
>pdb|2GEE|A Chain A, Crystal Structure Of Human Type Iii Fibronectin
Extradomain B And Domain 8
Length = 203
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 18/173 (10%)
Query: 485 SVTLRYTPQNSNHFDFYRFTL--SEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTV 542
S+ LR+TP NS+ YR T+ + IP+ E + + T L PG Y+ +V+TV
Sbjct: 38 SIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTV 97
Query: 543 ADGVLSTPIQRHDRLYPEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEGFLIQ 602
+G STP + P T + T I ++ +TW P ++ FL++
Sbjct: 98 KNGGESTPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPPS---------IDLTNFLVR 148
Query: 603 NLTLHTSIVIGDL--KPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLP 653
+ + +L P N + GTE V VS++++ HES P
Sbjct: 149 YSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVV-----SVSSVYEQHESTP 196
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 33/119 (27%), Positives = 56/119 (47%), Gaps = 2/119 (1%)
Query: 246 LENLYPGAGYSIQVFAISHGLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPVGS 305
+ L PG Y I V+ + +G S P Q PPT+L + + V W P
Sbjct: 81 VTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPPSI 140
Query: 306 IFTEYSIRYRTEEDKTWVRLPNVGTSLEAEV-TDMVPGEKCMIQVNSVSYSVESAHPLQ 363
T + +RY +++ V ++ S A V T+++PG + ++ V+SV Y + PL+
Sbjct: 141 DLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSV-YEQHESTPLR 198
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/127 (28%), Positives = 58/127 (45%), Gaps = 16/127 (12%)
Query: 159 FVDKTE--YVLESLLPGRKYSINVQAVSNGMES--------PSFPIIEDLRPIEFG---L 205
FVD + Y + L PG Y I+V V NG ES + P DLR G +
Sbjct: 71 FVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTDLRFTNIGPDTM 130
Query: 206 NISWKSDVNSRQDNFEVIYN--RNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAIS 263
++W + NF V Y+ +N+ + +++ +D+ ++L NL PG Y + V ++
Sbjct: 131 RVTWAPPPSIDLTNFLVRYSPVKNEEDVAE-LSISPSDNAVVLTNLLPGTEYVVSVSSVY 189
Query: 264 HGLRSEP 270
S P
Sbjct: 190 EQHESTP 196
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 54/122 (44%)
Query: 435 IDQLTPGVKYQFTIRTVSYNLESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQN 494
+ L PG+ Y ++ TV ES T+L+ +T +++ N T VT P
Sbjct: 81 VTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPPSI 140
Query: 495 SNHFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTPIQRH 554
R++ + + V E + + +D V NL PG Y +V +V + STP++
Sbjct: 141 DLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGR 200
Query: 555 DR 556
+
Sbjct: 201 QK 202
>pdb|3A5K|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 304
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 29 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 84
Query: 1096 R 1096
R
Sbjct: 85 R 85
>pdb|1G1F|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Tri-Phosphorylated Peptide (Rdi(Ptr)
Etd(Ptr)(Ptr)rk) From The Insulin Receptor Kinase
pdb|1G1G|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Mono-Phosphorylated Peptide (Etdy(Ptr)
Rkggkgll) From The Insulin Receptor Kinase
pdb|1G1H|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With A Bis-Phosphorylated Peptide
(Etd(Ptr)(Ptr) Rkggkgll) From The Insulin Receptor Kinase
pdb|2B4S|A Chain A, Crystal Structure Of A Complex Between Ptp1b And The Insulin
Receptor Tyrosine Kinase
pdb|2B4S|C Chain C, Crystal Structure Of A Complex Between Ptp1b And The Insulin
Receptor Tyrosine Kinase
Length = 298
Score = 49.7 bits (117), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 23 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 78
Query: 1096 R 1096
R
Sbjct: 79 R 79
>pdb|3ZV2|A Chain A, Human Protein-Tyrosine Phosphatase 1b C215a, S216a Mutant
Length = 320
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 23 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 78
Query: 1096 R 1096
R
Sbjct: 79 R 79
>pdb|1PTV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine
Length = 321
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 23 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 78
Query: 1096 R 1096
R
Sbjct: 79 R 79
>pdb|1OEO|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To Sulfonic Acid
pdb|1OET|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1OEU|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1OEV|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
Length = 321
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 23 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 78
Query: 1096 R 1096
R
Sbjct: 79 R 79
>pdb|1I57|A Chain A, Crystal Structure Of Apo Human Ptp1b (C215s) Mutant
Length = 310
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 35 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 90
Query: 1096 R 1096
R
Sbjct: 91 R 91
>pdb|3EU0|A Chain A, Crystal Structure Of The S-Nitrosylated Cys215 Of Ptp1b
Length = 327
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 29 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 84
Query: 1096 R 1096
R
Sbjct: 85 R 85
>pdb|1PTU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Hexa-Peptide
(Dadepyl-Nh2)
pdb|1PTT|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Phosphotyrosine-Containing Tetra-Peptide
(Ac-Depyl-Nh2)
Length = 321
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 23 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 78
Query: 1096 R 1096
R
Sbjct: 79 R 79
>pdb|1EEN|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-D-A-D-Bpa-Ptyr-L-I-P-Q-Q-G
pdb|1EEO|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Acetyl-E-L-E-F-Ptyr-M-D-Y-E-Nh2
pdb|1PTY|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Two Phosphotyrosine Molecules
Length = 321
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 23 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 78
Query: 1096 R 1096
R
Sbjct: 79 R 79
>pdb|1AAX|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With Two Bis(Para-Phosphophenyl)methane (Bppm)
Molecules
Length = 321
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 23 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 78
Query: 1096 R 1096
R
Sbjct: 79 R 79
>pdb|1PA1|A Chain A, Crystal Structure Of The C215d Mutant Of Protein Tyrosine
Phosphatase 1b
Length = 310
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 35 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 90
Query: 1096 R 1096
R
Sbjct: 91 R 91
>pdb|2NT7|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2NTA|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
Length = 299
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 23 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 78
Query: 1096 R 1096
R
Sbjct: 79 R 79
>pdb|2AZR|A Chain A, Crystal Structure Of Ptp1b With Bicyclic Thiophene Inhibitor
pdb|2B07|A Chain A, Crystal Structure Of Ptp1b With Tricyclic Thiophene
Inhibitor.
pdb|2H4G|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2H4K|A Chain A, Crystal Structure Of Ptp1b With A Monocyclic Thiophene
Inhibitor
pdb|2HB1|A Chain A, Crystal Structure Of Ptp1b With Monocyclic Thiophene
Inhibitor
pdb|2QBP|A Chain A, Crystal Structure Of Ptp1b-inhibitor Complex
pdb|2QBQ|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBR|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2QBS|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZMM|A Chain A, Crystal Structure Of Ptp1b-Inhibitor Complex
pdb|2ZN7|A Chain A, Crystal Structures Of Ptp1b-Inhibitor Complexes
Length = 299
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 23 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 78
Query: 1096 R 1096
R
Sbjct: 79 R 79
>pdb|1BZH|A Chain A, Cyclic Peptide Inhibitor Of Human Ptp1b
Length = 298
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 23 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 78
Query: 1096 R 1096
R
Sbjct: 79 R 79
>pdb|1ECV|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 5-Iodo-2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C83|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 6-(Oxalyl-Amino)-1h-Indole-5-Carboxylic
Acid
pdb|1C84|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 3-(Oxalyl-Amino)-Naphthalene-2-Carboxlic
Acid
pdb|1C85|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-Benzoic Acid
pdb|1C87|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino-4,7-Dihydro-5h-Thieno[2,3-
C]pyran-3-Carboxylic Acid
pdb|1C88|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b
Complexed With 2-(Oxalyl-Amino)-4,5,6,7-Tetrahydro-
Thieno[2,3-C]pyridine-3-Carboxylic Acid
Length = 298
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 23 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 78
Query: 1096 R 1096
R
Sbjct: 79 R 79
>pdb|1G7G|A Chain A, Human Ptp1b Catalytic Domain Complexes With Pnu179326
pdb|1JF7|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1JF7|B Chain B, Human Ptp1b Catalytic Domain Complexed With Pnu177836
pdb|1KAK|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1KAV|A Chain A, Human Tyrosine Phosphatase 1b Complexed With An Inhibitor
pdb|1T48|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T49|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|1T4J|A Chain A, Allosteric Inhibition Of Protein Tyrosine Phosphatase 1b
pdb|2F6T|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6V|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6W|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Y|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F6Z|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F70|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
pdb|2F71|A Chain A, Protein Tyrosine Phosphatase 1b With Sulfamic Acid
Inhibitors
Length = 298
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 23 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 78
Query: 1096 R 1096
R
Sbjct: 79 R 79
>pdb|2CM2|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (P212121)
pdb|2CM3|A Chain A, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CM3|B Chain B, Structure Of Protein Tyrosine Phosphatase 1b (C2)
pdb|2CMB|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CMC|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNE|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
Length = 304
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 29 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 84
Query: 1096 R 1096
R
Sbjct: 85 R 85
>pdb|1G7F|A Chain A, Human Ptp1b Catalytic Domain Complexed With Pnu177496
Length = 298
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 23 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 78
Query: 1096 R 1096
R
Sbjct: 79 R 79
>pdb|2FJM|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJM|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 35 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 90
Query: 1096 R 1096
R
Sbjct: 91 R 91
>pdb|1L8G|A Chain A, Crystal Structure Of Ptp1b Complexed With 7-(1,1-dioxo-1h-
Benzo[d]isothiazol-3-yloxymethyl)-2-(oxalyl-amino)-4,7-
Dihydro-5h-thieno[2,3-c]pyran-3-carboxylic Acid
Length = 321
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 23 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 78
Query: 1096 R 1096
R
Sbjct: 79 R 79
>pdb|1Q6J|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|1Q6M|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 3
pdb|1Q6N|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6N|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 4
pdb|1Q6P|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6P|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 6
pdb|1Q6S|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6S|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 9
pdb|1Q6T|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|1Q6T|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 11
pdb|2FJN|A Chain A, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
pdb|2FJN|B Chain B, The Structure Of Phosphotyrosine Phosphatase 1b In Complex
With Compound 2
Length = 310
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 35 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 90
Query: 1096 R 1096
R
Sbjct: 91 R 91
>pdb|1BZC|A Chain A, Human Ptp1b Catalytic Domain Complexed With Tpi
Length = 321
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 23 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 78
Query: 1096 R 1096
R
Sbjct: 79 R 79
>pdb|2CMA|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|3A5J|A Chain A, Crystal Structure Of Protein-Tyrosine Phosphatase 1b
Length = 327
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 29 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 84
Query: 1096 R 1096
R
Sbjct: 85 R 85
>pdb|1NL9|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b Inhibitor
Compound 12 Using A Linked-Fragment Strategy
pdb|1NNY|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b Inhibitor
Compound 23 Using A Linked-fragment Strategy
pdb|1NO6|A Chain A, Potent, Selective Protein Tyrosine Phosphatase 1b Inhibitor
Compound 5 Using A Linked-fragment Strategy
pdb|1NZ7|A Chain A, Potent, Selective Inhibitors Of Protein Tyrosine Phosphatase
1b Using A Second Phosphotyrosine Binding Site, Complexed
With Compound 19.
pdb|1ONY|A Chain A, Oxalyl-aryl-amino Benzoic Acid Inhibitors Of Ptp1b, Compound
17
pdb|1ONZ|A Chain A, Oxalyl-Aryl-Amino Benzoic Acid Inhibitors Of Ptp1b, Compound
8b
pdb|1OEM|X Chain X, Ptp1b With The Catalytic Cysteine Oxidized To A
Sulfenyl-Amide Bond
pdb|1OES|A Chain A, Oxidation State Of Protein Tyrosine Phosphatase 1b
pdb|1PXH|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b With
Potent And Selective Bidentate Inhibitor Compound 2
pdb|1PH0|A Chain A, Non-Carboxylic Acid-Containing Inhibitor Of Ptp1b Targeting
The Second Phosphotyrosine Site
pdb|1PYN|A Chain A, Dual-Site Potent, Selective Protein Tyrosine Phosphatase 1b
Inhibitor Using A Linked Fragment Strategy And A Malonate
Head On The First Site
pdb|1Q1M|A Chain A, A Highly Efficient Approach To A Selective And Cell Active
Ptp1b Inhibitors
pdb|1QXK|A Chain A, Monoacid-Based, Cell Permeable, Selective Inhibitors Of
Protein Tyrosine Phosphatase 1b
pdb|1SUG|A Chain A, 1.95 A Structure Of Apo Protein Tyrosine Phosphatase 1b
pdb|1XBO|A Chain A, Ptp1b Complexed With Isoxazole Carboxylic Acid
pdb|1WAX|A Chain A, Protein Tyrosine Phosphatase 1b With Active Site Inhibitor
pdb|2BGD|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2BGE|A Chain A, Structure-Based Design Of Protein Tyrosine Phosphatase-1b
Inhibitors
pdb|2CM7|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CM8|A Chain A, Structural Basis For Inhibition Of Protein Tyrosine
Phosphatase 1b By Isothiazolidinone Heterocyclic
Phosphonate Mimetics
pdb|2CNF|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNG|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNH|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2CNI|A Chain A, Structural Insights Into The Design Of Nonpeptidic
Isothiazolidinone-Containing Inhibitors Of Protein
Tyrosine Phosphatase 1b
pdb|2HNP|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2HNQ|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase 1b
pdb|2VEU|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEV|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEW|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEX|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|2VEY|A Chain A, Crystal Strucutre Of Protein Tyrosine Phosphatase 1b In
Complex With An Isothiazolidinone-Containing Inhibitor
pdb|3D9C|A Chain A, Crystal Structure Ptp1b Complex With Aryl Seleninic Acid
pdb|3EAX|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule Compound
Lzp-6
pdb|3EB1|A Chain A, Crystal Structure Ptp1b Complex With Small Molecule
Inhibitor Lzp-25
pdb|3I7Z|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog Fo
First Catalytic Step
pdb|3I80|A Chain A, Protein Tyrosine Phosphatase 1b - Transition State Analog Fo
Second Catalytic Step
Length = 321
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 23 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 78
Query: 1096 R 1096
R
Sbjct: 79 R 79
>pdb|1BZJ|A Chain A, Human Ptp1b Complexed With Tpicooh
Length = 297
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 22 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 77
Query: 1096 R 1096
R
Sbjct: 78 R 78
>pdb|3QKP|A Chain A, Protein Tyrosine Phosphatase 1b - Apo W179f Mutant With Open
Wpd-Loop
pdb|3QKQ|A Chain A, Protein Tyrosine Phosphatase 1b - W179f Mutant Bound With
Vanadate
Length = 321
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 23 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 78
Query: 1096 R 1096
R
Sbjct: 79 R 79
>pdb|3SME|A Chain A, Structure Of Ptp1b Inactivated By H2o2BICARBONATE
Length = 300
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 25 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 80
Query: 1096 R 1096
R
Sbjct: 81 R 81
>pdb|2F6F|A Chain A, The Structure Of The S295f Mutant Of Human Ptp1b
Length = 302
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 27 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 82
Query: 1096 R 1096
R
Sbjct: 83 R 83
>pdb|1A5Y|A Chain A, Protein Tyrosine Phosphatase 1b Cysteinyl-Phosphate
Intermediate
Length = 330
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 23 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 78
Query: 1096 R 1096
R
Sbjct: 79 R 79
>pdb|1LQF|A Chain A, Structure Of Ptp1b In Complex With A Peptidic Bisphosphonate
Inhibitor
pdb|1LQF|B Chain B, Structure Of Ptp1b In Complex With A Peptidic Bisphosphonate
Inhibitor
pdb|1LQF|C Chain C, Structure Of Ptp1b In Complex With A Peptidic Bisphosphonate
Inhibitor
pdb|1LQF|D Chain D, Structure Of Ptp1b In Complex With A Peptidic Bisphosphonate
Inhibitor
Length = 295
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 35 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 90
Query: 1096 R 1096
R
Sbjct: 91 R 91
>pdb|4I8N|A Chain A, Crystal Structure Of Protein Tyrosine Phosphatase 1b In
Complex With An Inhibitor
[(4-{(2s)-2-(1,3-Benzoxazol-2-Yl)-2-[(4-Fluorophenyl)
Sulfamoyl]ethyl}phenyl)amino](Oxo)acetic Acid
Length = 354
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 57 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 112
Query: 1096 R 1096
R
Sbjct: 113 R 113
>pdb|3CWE|A Chain A, Ptp1b In Complex With A Phosphonic Acid Inhibitor
Length = 290
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + C A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 30 IRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 85
Query: 1096 R 1096
R
Sbjct: 86 R 86
>pdb|1WCH|A Chain A, Crystal Structure Of Ptpl1 Human Tyrosine Phosphatase
Mutated In Colorectal Cancer - Evidence For A Second
Phosphotyrosine Substrate Recognition Pocket
Length = 315
Score = 46.6 bits (109), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 34/55 (61%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVL 1151
RSGTLI +D +L I+ DI +V MR +R MVQTE QYI +Q +L VL
Sbjct: 252 RSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVL 306
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 1045 CTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYV 1089
C NR KNR+ NILPYD +R P+ DE G YINA+++
Sbjct: 67 CLIGQTKENRRKNRYKNILPYDATRV---PLGDEGG--YINASFI 106
>pdb|2OC3|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Protein
Tyrosine Phosphatase Non-Receptor Type 18
Length = 303
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 29/48 (60%)
Query: 1044 SCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPG 1091
S A P N KNR+ ++LPYD +R L + +E SDYIN N++ G
Sbjct: 51 STVAGSRPENVRKNRYKDVLPYDQTRVILSLLQEEGHSDYINGNFIRG 98
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 1097 RSGTLIALDRILQSINHSDV---VDIFGIVYHMRKERVWMVQTEQQY 1140
R+G L +D + Q + + +F +V MRK+R VQTE+QY
Sbjct: 239 RTGVLCTVDYVRQLLLTQMIPPDFSLFDVVLKMRKQRPAAVQTEEQY 285
>pdb|1NWL|A Chain A, Crystal Structure Of The Ptp1b Complexed With Sp7343-Sp7964,
A Ptyr Mimetic
pdb|1NWE|A Chain A, Ptp1b R47c Modified At C47 With N-[4-(2-{2-[3-(2-Bromo-
Acetylamino)-Propionylamino]-3-Hydroxy-Propionylamino}-
Ethyl)-Phenyl]-Oxalamic Acid
Length = 298
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 35/61 (57%), Gaps = 4/61 (6%)
Query: 1036 LKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
++H + A LP N+ +NR+ ++ P+DHSR KL +E +DYINA+ + +
Sbjct: 23 IRHEASDFPSRVAKLPKNKNRNRYCDVSPFDHSRIKLH----QEDNDYINASLIKMEEAQ 78
Query: 1096 R 1096
R
Sbjct: 79 R 79
>pdb|3R8Q|A Chain A, Structure Of Fibronectin Domain 12-14
Length = 290
Score = 45.1 bits (105), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 18/204 (8%)
Query: 161 DKTEYVLESLLPGRKYSINVQAVSNGMES-PSFPII---EDLRP---------IEFGLNI 207
D + V+ L+ KY ++V A+ + + S P+ ++ E++ P E + I
Sbjct: 72 DSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARVTDATETTITI 131
Query: 208 SWKSDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAISHGLR 267
SW++ + F+V + T T+ + L PG Y I ++ ++ R
Sbjct: 132 SWRTKTET-ITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNAR 190
Query: 268 SEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRT--EEDKTWVRL 325
S P + P+NL T+ N++LV W+ P I T Y I+Y + V
Sbjct: 191 SSPVVIDASTAIDAPSNLRFLATTPNSLLVSWQPPRARI-TGYIIKYEKPGSPPREVVPR 249
Query: 326 PNVGTSLEAEVTDMVPGEKCMIQV 349
P G + EA +T + PG + I V
Sbjct: 250 PRPGVT-EATITGLEPGTEYTIYV 272
>pdb|1FNH|A Chain A, Crystal Structure Of Heparin And Integrin Binding Segment
Of Human Fibronectin
Length = 271
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 88/204 (43%), Gaps = 18/204 (8%)
Query: 161 DKTEYVLESLLPGRKYSINVQAVSNGMES-PSFPII---EDLRP---------IEFGLNI 207
D + V+ L+ KY ++V A+ + + S P+ ++ E++ P E + I
Sbjct: 53 DSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARVTDATETTITI 112
Query: 208 SWKSDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAISHGLR 267
SW++ + F+V + T T+ + L PG Y I ++ ++ R
Sbjct: 113 SWRTKTET-ITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNAR 171
Query: 268 SEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRT--EEDKTWVRL 325
S P + P+NL T+ N++LV W+ P I T Y I+Y + V
Sbjct: 172 SSPVVIDASTAIDAPSNLRFLATTPNSLLVSWQPPRARI-TGYIIKYEKPGSPPREVVPR 230
Query: 326 PNVGTSLEAEVTDMVPGEKCMIQV 349
P G + EA +T + PG + I V
Sbjct: 231 PRPGVT-EATITGLEPGTEYTIYV 253
>pdb|1L8K|A Chain A, T Cell Protein-Tyrosine Phosphatase Structure
Length = 314
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%), Gaps = 4/43 (9%)
Query: 1047 AADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYV 1089
A P NR +NR+ ++ PYDHSR KLQ ++ DYINA+ V
Sbjct: 36 VAKFPENRNRNRYRDVSPYDHSRVKLQNAEN----DYINASLV 74
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEG 1153
RSGT +D L + D ++I ++ +MRK R+ ++QT Q + +A++EG
Sbjct: 222 RSGTFSLVDTCLVLMEKGDDINIKQVLLNMRKYRMGLIQTPDQ---LRFSYMAIIEG 275
>pdb|3EW3|B Chain B, The 1:2 Complex Between A Nterminal Elongated Prolactin
And Cellular Domain Of The Rat Prolactin Receptor
pdb|3EW3|C Chain C, The 1:2 Complex Between A Nterminal Elongated Prolactin
And Cellular Domain Of The Rat Prolactin Receptor
Length = 221
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 277 VYPKPPTNLTLE----KTSSNAVLVKWKEP------VGSIFTEYSIRYRTEEDKTWVRLP 326
V P+PP NLTLE K + VKW P G EY IR + EE + W +
Sbjct: 102 VEPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEW-EIH 160
Query: 327 NVGTSLEAEVTDMVPGEKCMIQV 349
G + +V D+ PG+K ++Q
Sbjct: 161 FTGHQTQFKVFDLYPGQKYLVQT 183
>pdb|3NPZ|B Chain B, Prolactin Receptor (Prlr) Complexed With The Natural
Hormone (Prl)
pdb|3NPZ|C Chain C, Prolactin Receptor (Prlr) Complexed With The Natural
Hormone (Prl)
Length = 220
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 277 VYPKPPTNLTLE----KTSSNAVLVKWKEP------VGSIFTEYSIRYRTEEDKTWVRLP 326
V P+PP NLTLE K + VKW P G EY IR + EE + W +
Sbjct: 101 VEPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEW-EIH 159
Query: 327 NVGTSLEAEVTDMVPGEKCMIQV 349
G + +V D+ PG+K ++Q
Sbjct: 160 FTGHQTQFKVFDLYPGQKYLVQT 182
>pdb|1F6F|B Chain B, Crystal Structure Of The Ternary Complex Between Ovine
Placental Lactogen And The Extracellular Domain Of The
Rat Prolactin Receptor
pdb|1F6F|C Chain C, Crystal Structure Of The Ternary Complex Between Ovine
Placental Lactogen And The Extracellular Domain Of The
Rat Prolactin Receptor
Length = 210
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 277 VYPKPPTNLTLE----KTSSNAVLVKWKEP------VGSIFTEYSIRYRTEEDKTWVRLP 326
V P+PP NLTLE K + VKW P G EY IR + EE + W +
Sbjct: 101 VEPEPPRNLTLEVKQLKDKKTYLWVKWSPPTITDVKTGWFTMEYEIRLKPEEAEEW-EIH 159
Query: 327 NVGTSLEAEVTDMVPGEKCMIQV 349
G + +V D+ PG+K ++Q
Sbjct: 160 FTGHQTQFKVFDLYPGQKYLVQT 182
>pdb|2SHP|A Chain A, Tyrosine Phosphatase Shp-2
pdb|2SHP|B Chain B, Tyrosine Phosphatase Shp-2
Length = 525
Score = 43.5 bits (101), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 1053 NRPKNRFTNILPYDHSRFKLQPVD-DEEGSDYINANYV 1089
N+ KNR+ NILP+DH+R L D +E SDYINAN +
Sbjct: 273 NKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANII 310
>pdb|3D42|A Chain A, Crystal Structure Of Heptp In Complex With A
Monophosphorylated Erk2 Peptide
pdb|3D44|A Chain A, Crystal Structure Of Heptp In Complex With A Dually
Phosphorylated Erk2 Peptide Mimetic
Length = 308
Score = 43.1 bits (100), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 1049 DLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNS 1094
D+P + K+R+ +ILP SR L +E DYINANY+ G++
Sbjct: 63 DIPGHASKDRYKDILPNPQSRVCLGRAQSQEDGDYINANYIRGYDG 108
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCL 1147
R+G IA Q + VDI GIV +R +R M+QT +QY +H L
Sbjct: 245 RTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHHTL 295
>pdb|3B7O|A Chain A, Crystal Structure Of The Human Tyrosine Phosphatase Shp2
(Ptpn11) With An Accessible Active Site
Length = 316
Score = 43.1 bits (100), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 1053 NRPKNRFTNILPYDHSRFKLQPVD-DEEGSDYINANYV 1089
N+ KNR+ NILP+DH+R L D +E SDYINAN +
Sbjct: 60 NKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANII 97
>pdb|3O5X|A Chain A, Crystal Structure Of The Oncogenic Tyrosine Phosphatase Shp2
Complexed With A Salicylic Acid-Based Small Molecule
Inhibitor
pdb|3MOW|A Chain A, Crystal Structure Of Shp2 In Complex With A Tautomycetin
Analog Ttn D- 1
Length = 276
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/38 (55%), Positives = 27/38 (71%), Gaps = 1/38 (2%)
Query: 1053 NRPKNRFTNILPYDHSRFKLQPVD-DEEGSDYINANYV 1089
N+ KNR+ NILP+DH+R L D +E SDYINAN +
Sbjct: 13 NKNKNRYKNILPFDHTRVVLHDGDPNEPVSDYINANII 50
>pdb|2QDM|A Chain A, Crystal Structure Of The Heptp Catalytic Domain
C270sD236AQ314A Mutant
Length = 309
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 1049 DLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNS 1094
D+P + K+R+ ILP SR L +E DYINANY+ G++
Sbjct: 64 DIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDG 109
Score = 37.4 bits (85), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCL 1147
R+G IA Q + VDI GIV +R +R M+ T +QY +H L
Sbjct: 246 RTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIATAEQYQFLHHTL 296
>pdb|2QDC|A Chain A, Crystal Structure Of The Heptp Catalytic Domain D236a Mutant
Length = 309
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 1049 DLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNS 1094
D+P + K+R+ ILP SR L +E DYINANY+ G++
Sbjct: 64 DIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDG 109
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCL 1147
R+G IA Q + VDI GIV +R +R M+QT +QY +H L
Sbjct: 246 RTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHHTL 296
>pdb|2HVL|A Chain A, Crystal Structure Of The Heptp Catalytic Domain C270s Mutant
pdb|2QDP|A Chain A, Crystal Structure Of The Heptp Catalytic Domain C270s Mutant
Crystallized In Ammonium Acetate
Length = 309
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 1049 DLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNS 1094
D+P + K+R+ ILP SR L +E DYINANY+ G++
Sbjct: 64 DIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDG 109
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCL 1147
R+G IA Q + VDI GIV +R +R M+QT +QY +H L
Sbjct: 246 RTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHHTL 296
>pdb|2A3K|A Chain A, Crystal Structure Of The Human Protein Tyrosine Phosphatase,
Ptpn7 (Heptp, Hematopoietic Protein Tyrosine Phosphatase)
Length = 296
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 1049 DLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNS 1094
D+P + K+R+ ILP SR L +E DYINANY+ G++
Sbjct: 53 DIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDG 98
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCL 1147
R+G IA Q + VDI GIV +R +R M+QT +QY +H L
Sbjct: 235 RTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHHTL 285
>pdb|1ZC0|A Chain A, Crystal Structure Of Human Hematopoietic Tyrosine
Phosphatase (heptp) Catalytic Domain
Length = 309
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 1049 DLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNS 1094
D+P + K+R+ ILP SR L +E DYINANY+ G++
Sbjct: 64 DIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDG 109
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCL 1147
R+G IA Q + VDI GIV +R +R M+QT +QY +H L
Sbjct: 246 RTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHHTL 296
>pdb|2I1Y|A Chain A, Crystal Structure Of The Phosphatase Domain Of Human Ptp
Ia-2
pdb|2I1Y|B Chain B, Crystal Structure Of The Phosphatase Domain Of Human Ptp
Ia-2
Length = 301
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 1044 SCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPR 1096
+C A N KNR + LPYDH+R KL+ SDYINA+ + H+ PR
Sbjct: 47 TCATAQGEGNIKKNRHPDFLPYDHARIKLKVESSPSRSDYINASPIIEHD-PR 98
>pdb|3O4S|A Chain A, Crystal Structure Of Heptp With A Closed Wpd Loop And An
Ordered E- Loop
pdb|3O4T|A Chain A, Crystal Structure Of Heptp With An Open Wpd Loop And
Partially Depleted Active Site
pdb|3O4U|A Chain A, Crystal Structure Of Heptp With An Atypically Open Wpd Loop
Length = 308
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 1049 DLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNS 1094
D+P + K+R+ ILP SR L +E DYINANY+ G++
Sbjct: 63 DIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDG 108
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCL 1147
R+G IA Q + VDI GIV +R +R M+QT +QY +H L
Sbjct: 245 RTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHHTL 295
>pdb|2GP0|A Chain A, Heptp Catalytic Domain (Residues 44-339), S225d Mutant
Length = 309
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%)
Query: 1049 DLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNS 1094
D+P + K+R+ ILP SR L +E DYINANY+ G++
Sbjct: 64 DIPGHASKDRYKTILPNPQSRVCLGRAQSQEDGDYINANYIRGYDG 109
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 27/51 (52%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCL 1147
R+G IA Q + VDI GIV +R +R M+QT +QY +H L
Sbjct: 246 RTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHHTL 296
>pdb|1P15|A Chain A, Crystal Structure Of The D2 Domain Of Rptpa
pdb|1P15|B Chain B, Crystal Structure Of The D2 Domain Of Rptpa
Length = 253
Score = 42.4 bits (98), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%), Gaps = 3/56 (5%)
Query: 1048 ADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRRSGTLIA 1103
+LP N KNR I+PY+ +R + EE +DY+NA+++ G+ R+ + IA
Sbjct: 4 GNLPANMKKNRVLQIIPYEFNRVIIPVKRGEENTDYVNASFIDGY---RQKDSYIA 56
Score = 38.1 bits (87), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQY 1140
R+GT AL +L+ + ++D+F V +R +R MVQT +QY
Sbjct: 189 RTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQY 232
>pdb|2B49|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase, Non-Receptor Type 3
Length = 287
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 28/46 (60%), Gaps = 5/46 (10%)
Query: 1044 SCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYV 1089
+ T A LP N KNR+ ++LPYD +R LQ DYINA+YV
Sbjct: 35 AITFAKLPQNLDKNRYKDVLPYDTTRVLLQG-----NEDYINASYV 75
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+G L+ ++ + + + IV MR +R MVQT QY + + +L V E
Sbjct: 222 RTGVLVTMETAMCLTERNLPIYPLDIVRKMRDQRAMMVQTSSQYKFVCEAILRVYEEGLV 281
Query: 1157 QL 1158
Q+
Sbjct: 282 QM 283
>pdb|2I75|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase N4
(Ptpn4)
Length = 320
Score = 40.4 bits (93), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 28/105 (26%)
Query: 989 ESRNADNMSLQDSIVETSRPI----RLENFAEHYRIMSAXXXXXXXXXXXXLKHVGREQS 1044
+S + D+ SL++S+++ + + L F + YR K G S
Sbjct: 22 DSVHQDDHSLRESMIQLAEGLITGTVLTQFDQLYR-----------------KKPGMTMS 64
Query: 1045 CTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYV 1089
C A LP N KNR+ +I PYD +R L+ DYINANY+
Sbjct: 65 C--AKLPQNISKNRYRDISPYDATRVILK-----GNEDYINANYI 102
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLE 1152
R+G LI ++ + I + V IV MR +R M+QT QY + + +L V E
Sbjct: 250 RTGVLITMETAMCLIECNQPVYPLDIVRTMRDQRAMMIQTPSQYRFVCEAILKVYE 305
>pdb|1TDQ|A Chain A, Structural Basis For The Interactions Between Tenascins
And The C-Type Lectin Domains From Lecticans: Evidence
For A Cross-Linking Role For Tenascins
Length = 283
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 50/231 (21%), Positives = 100/231 (43%), Gaps = 24/231 (10%)
Query: 242 SKLLLENLYPGAGYSIQVFAISHGLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWKE 301
S+ ++ L PG+ Y + + A+ S+ P NL + ++ ++ ++W
Sbjct: 68 SQYSVQALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGSRTATSLDLEWDN 127
Query: 302 PVGSIFTEYSIRYRTEEDKTW--VRLP-NVGTSLEAEVTDMVPGEKCMIQVNSVSYSVES 358
EY + Y T + + V +P +G + + +TD+VPG + + +++V S +S
Sbjct: 128 SEAEA-QEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQS 186
Query: 359 AHPLQINHTISPNPATYVAALVDASNVTLEFPRPEGRIEYYLVTW---RGIGPEATSTEL 415
T +P + ++++L + + G I++Y +T+ GI E T
Sbjct: 187 IPATMNARTELDSPRDLMVTASSETSISLIWTKASGPIDHYRITFTPSSGISSEVTV--- 243
Query: 416 FTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTI---RTVSYNLESGVTSLS 463
+D+ + L D L PG +Y +I R +LES V + +
Sbjct: 244 ----------PRDRTSYTLTD-LEPGAEYIISITAERGRQQSLESTVDAFT 283
Score = 38.5 bits (88), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 523 KVTFNNLTPGKLYNFTVWTVADGVLSTPIQRHDRLYPEPITRINATEITDTSVSLTWDSP 582
K T +L PG Y + V + S P + R + + T ++TS+SL W
Sbjct: 161 KTTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTASSETSISLIWTKA 220
Query: 583 RGEYNAFEVQYLNTEGFLIQNLTL---HTSIVIGDLKPHRNYTFTVIVRSGTESSV 635
G + + + + + G + +T+ TS + DL+P Y ++ G + S+
Sbjct: 221 SGPIDHYRITFTPSSG-ISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSL 275
>pdb|2QEP|A Chain A, Crystal Structure Of The D1 Domain Of Ptprn2 (Ia2beta)
pdb|2QEP|B Chain B, Crystal Structure Of The D1 Domain Of Ptprn2 (Ia2beta)
Length = 304
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 1053 NRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPR 1096
N PKNR +L YDHSR L+ + SDYINA+ + H+ PR
Sbjct: 57 NVPKNRSLAVLTYDHSRVLLKAENSHSHSDYINASPIMDHD-PR 99
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 1097 RSGTLIALDRILQSI-NHSDVVDIFGIVYHMRKERVWMVQTEQQY 1140
RSGT + +D +L + + +DI + H+R +R MVQT++Q+
Sbjct: 238 RSGTYVLIDMVLNKMAKGAKEIDIAATLEHLRDQRPGMVQTKEQF 282
>pdb|3FL7|A Chain A, Crystal Structure Of The Human Ephrin A2 Ectodomain
Length = 536
Score = 40.0 bits (92), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 608 TSIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAI 645
TS+ + DL+PH NYTFTV R+G V RS +++
Sbjct: 400 TSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASV 437
>pdb|3MX0|A Chain A, Crystal Structure Of Epha2 Ectodomain In Complex With
Ephrin-A5
pdb|3MX0|C Chain C, Crystal Structure Of Epha2 Ectodomain In Complex With
Ephrin-A5
Length = 409
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 608 TSIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAI 645
TS+ + DL+PH NYTFTV R+G V RS +++
Sbjct: 369 TSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASV 406
>pdb|2X10|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain
Length = 545
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 608 TSIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAI 645
TS+ + DL+PH NYTFTV R+G V RS +++
Sbjct: 397 TSVTVSDLEPHXNYTFTVEARNGVSGLVTSRSFRTASV 434
>pdb|2X11|A Chain A, Crystal Structure Of The Complete Epha2 Ectodomain In
Complex With Ephrin A5 Receptor Binding Domain
Length = 545
Score = 40.0 bits (92), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%)
Query: 608 TSIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAI 645
TS+ + DL+PH NYTFTV R+G V RS +++
Sbjct: 397 TSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASV 434
>pdb|2BIJ|A Chain A, Crystal Structure Of The Human Protein Tyrosine Phosphatase
Ptpn5 (step, Striatum Enriched Enriched Phosphatase)
Length = 305
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 1049 DLPCNRPKNRFTNILPYDHSRFKL-QPVDDEEGSDYINANYVPGHNSPRR 1097
D+P KNR+ ILP HSR L P D+ S YINANY+ G+ +
Sbjct: 60 DIPGLVRKNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEK 109
Score = 37.0 bits (84), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCL 1147
R+G IA Q + VVDI +R++R M+QT +QY +H +
Sbjct: 244 RTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGGMIQTCEQYQFVHHVM 294
>pdb|2CJZ|A Chain A, Crystal Structure Of The C472s Mutant Of Human Protein
Tyrosine Phosphatase Ptpn5 (Step, Striatum Enriched
Phosphatase) In Complex With Phosphotyrosine
Length = 305
Score = 40.0 bits (92), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 1049 DLPCNRPKNRFTNILPYDHSRFKL-QPVDDEEGSDYINANYVPGHNSPRR 1097
D+P KNR+ ILP HSR L P D+ S YINANY+ G+ +
Sbjct: 60 DIPGLVRKNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEK 109
Score = 37.0 bits (84), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCL 1147
R+G IA Q + VVDI +R++R M+QT +QY +H +
Sbjct: 244 RTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGGMIQTCEQYQFVHHVM 294
>pdb|2BV5|A Chain A, Crystal Structure Of The Human Protein Tyrosine Phosphatase
Ptpn5 At 1.8a Resolution
Length = 282
Score = 39.7 bits (91), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Query: 1049 DLPCNRPKNRFTNILPYDHSRFKL-QPVDDEEGSDYINANYVPGHNSPRR 1097
D+P KNR+ ILP HSR L P D+ S YINANY+ G+ +
Sbjct: 39 DIPGLVRKNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEK 88
Score = 37.0 bits (84), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 26/51 (50%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCL 1147
R+G IA Q + VVDI +R++R M+QT +QY +H +
Sbjct: 223 RTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGGMIQTCEQYQFVHHVM 273
>pdb|3LPW|A Chain A, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
pdb|3LPW|B Chain B, Crystal Structure Of The Fniii-Tandem A77-A78 From The
A-Band Of Titin
Length = 197
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 82/182 (45%), Gaps = 20/182 (10%)
Query: 185 NGMESPSFPIIEDLRPIEF---GLNISWKS---DVNSRQDNFEVIYNRNDTITEDPITVV 238
M++P P +DL+ E + ++W D S+ N+ I + ++ + TV
Sbjct: 1 GAMDTPGPP--QDLKVKEVTKTSVTLTWDPPLLDGGSKIKNY--IVEKRESTRKAYSTVA 56
Query: 239 TTDSKL--LLENLYPGAGYSIQVFAISH---GLRSEPHDYFQAV-YPKPPTNLTLEKTSS 292
T K ++ L G Y +V A + GL +E + +A P PP +TL +
Sbjct: 57 TNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTR 116
Query: 293 NAVLVKWKEP---VGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQV 349
N+V + W++P GS Y + +T+ W V + EA +T ++ GE+ +V
Sbjct: 117 NSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKVT-EATITGLIQGEEYSFRV 175
Query: 350 NS 351
++
Sbjct: 176 SA 177
>pdb|2DJU|A Chain A, Solution Structures Of The Fn3 Domain Of Human Receptor-
Type Tyrosine-Protein Phosphatase F
Length = 106
Score = 39.7 bits (91), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGE---YNAFEVQYLNTEG-FLIQNLTLHTSIVIGD 614
P+P + TE T TSV+LTWDS E Y + + TEG F + T IG
Sbjct: 8 PKPPIDLVVTETTATSVTLTWDSGNSEPVTYYGIQYRAAGTEGPFQEVDGVATTRYSIGG 67
Query: 615 LKPHRNYTFTVIV 627
L P Y F V+
Sbjct: 68 LSPFSEYAFRVLA 80
Score = 30.0 bits (66), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYR 315
PKPP +L + +T++ +V + W T Y I+YR
Sbjct: 8 PKPPIDLVVTETTATSVTLTWDSGNSEPVTYYGIQYR 44
>pdb|2A8B|A Chain A, Crystal Structure Of The Catalytic Domain Of Human Tyrosine
Phosphatase Receptor, Type R
Length = 283
Score = 38.9 bits (89), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCL 1147
R+G IA Q + VVD IV +R +R MVQT +QY +H L
Sbjct: 222 RTGCFIATSIGCQQLKEEGVVDALSIVCQLRMDRGGMVQTSEQYEFVHHAL 272
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 1049 DLPCNRPKNRFTNILPYDHSRFKLQPVDDEEG-SDYINANYVPGHNSPRRS 1098
D+P + KNR+ ILP SR L+P + + S YINANY+ G++ ++
Sbjct: 39 DIPRHGTKNRYKTILPNPLSRVCLRPKNVTDSLSTYINANYIRGYSGKEKA 89
>pdb|1JLN|A Chain A, Crystal Structure Of The Catalytic Domain Of Protein
Tyrosine Phosphatase Ptp-SlBR7
Length = 297
Score = 38.9 bits (89), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCL 1147
R+G IA Q + VVD IV +R +R MVQT +QY +H L
Sbjct: 235 RTGCFIATSIGCQQLKEEGVVDALSIVCQLRVDRGGMVQTSEQYEFVHHAL 285
Score = 38.1 bits (87), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 1049 DLPCNRPKNRFTNILPYDHSRFKLQPVDDEEG-SDYINANYVPGHNSPRRS 1098
D+P + KNR+ ILP SR L+P + + S YINANY+ G++ ++
Sbjct: 52 DIPRHGTKNRYKTILPNPLSRVCLRPKNITDSLSTYINANYIRGYSGKEKA 102
>pdb|2PA5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9
pdb|2PA5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9
pdb|4GE2|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 3
pdb|4GE2|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 3
pdb|4GE5|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 5
pdb|4GE5|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 5
pdb|4GE6|A Chain A, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 7
pdb|4GE6|B Chain B, Crystal Structure Of Human Protein Tyrosine Phosphatase
Ptpn9 (Meg2) Complex With Compound 7
Length = 314
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+GT +LD L + +++F V MR +R + +QT +QY + C A+LE E
Sbjct: 246 RTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAFSIQTPEQY---YFCYKAILEFAEK 302
Query: 1157 Q 1157
+
Sbjct: 303 E 303
Score = 33.9 bits (76), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 24/42 (57%)
Query: 1051 PCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGH 1092
P N KNR+ ++ D +R KL +DYINA+++ G+
Sbjct: 50 PGNLEKNRYGDVPCLDQTRVKLTKRSGHTQTDYINASFMDGY 91
>pdb|3QWQ|B Chain B, Crystal Structure Of The Extracellular Domain Of The
Epidermal Growth Factor Receptor In Complex With An
Adnectin
Length = 114
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 34/60 (56%), Gaps = 6/60 (10%)
Query: 571 TDTSVSLTWDSPRGEYNAFEVQYLNTEG-FLIQNLT----LHTSIVIGDLKPHRNYTFTV 625
T TS+ ++WDS RG Y + + Y T G +Q T +HT+ + G LKP +YT TV
Sbjct: 16 TPTSLLISWDSGRGSYQYYRITYGETGGNSPVQEFTVPGPVHTATISG-LKPGVDYTITV 74
>pdb|3TES|A Chain A, Crystal Structure Of Tencon
pdb|3TES|B Chain B, Crystal Structure Of Tencon
pdb|3TES|C Chain C, Crystal Structure Of Tencon
pdb|3TES|D Chain D, Crystal Structure Of Tencon
Length = 98
Score = 38.1 bits (87), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 14/98 (14%)
Query: 557 LYPEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTE--GFLIQNLTL---HTSIV 611
+ P P + +E+T+ S+ L+W +P +++F +QY +E G I NLT+ S
Sbjct: 1 MLPAPKNLV-VSEVTEDSLRLSWTAPDAAFDSFMIQYQESEKVGEAI-NLTVPGSERSYD 58
Query: 612 IGDLKPHRNYTFTVI-VRSGTESSVLRRSLPVSAIFQT 648
+ LKP YT ++ V+ G RS P+SA F T
Sbjct: 59 LTGLKPGTEYTVSIYGVKGG------HRSNPLSAEFTT 90
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 202 EFGLNISWKSDVNSRQDNFEVIYNRNDTITED-PITVVTTDSKLLLENLYPGAGYSIQVF 260
E L +SW + ++ D+F + Y ++ + E +TV ++ L L PG Y++ ++
Sbjct: 15 EDSLRLSWTAP-DAAFDSFMIQYQESEKVGEAINLTVPGSERSYDLTGLKPGTEYTVSIY 73
Query: 261 AISHGLRSEP 270
+ G RS P
Sbjct: 74 GVKGGHRSNP 83
>pdb|2BZL|A Chain A, Crystal Structure Of The Human Protein Tyrosine Phosphatase
N14 At 1.65 A Resolution
Length = 325
Score = 37.4 bits (85), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 37/56 (66%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLE 1152
R+G LI + ++ + H++ V++ ++ +R++R++M+QT QY ++Q L+ L+
Sbjct: 265 RTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQ 320
>pdb|2FNB|A Chain A, Nmr Structure Of The Fibronectin Ed-B Domain, Nmr, 20
Structures
Length = 95
Score = 37.4 bits (85), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 485 SVTLRYTPQNSNHFDFYRFTL--SEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTV 542
S+ LR+TP NS+ YR T+ + IP+ E + + T L PG Y+ +V T+
Sbjct: 21 SIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVITL 80
Query: 543 ADGVLSTP 550
+G S P
Sbjct: 81 INGGESAP 88
>pdb|2YRZ|A Chain A, Solution Structure Of The Fibronectin Type Iii Domain Of
Human Integrin Beta-4
Length = 118
Score = 37.4 bits (85), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 39/77 (50%), Gaps = 6/77 (7%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGE--YNAFEVQYLNTEGFLIQNLTL----HTSIVI 612
P+ TR+ + + TS+ ++W PR E + V+Y G + L + TS+V+
Sbjct: 18 PDTPTRLVFSALGPTSLRVSWQEPRCERPLQGYSVEYQLLNGGELHRLNIPNPAQTSVVV 77
Query: 613 GDLKPHRNYTFTVIVRS 629
DL P+ +Y F V +S
Sbjct: 78 EDLLPNHSYVFRVRAQS 94
>pdb|4AZ1|A Chain A, Crystal Structure Of The Trypanosoma Cruzi Protein Tyrosine
Phosphatase Tcptp1, A Potential Therapeutic Target For
Chagas' Disease
pdb|4AZ1|B Chain B, Crystal Structure Of The Trypanosoma Cruzi Protein Tyrosine
Phosphatase Tcptp1, A Potential Therapeutic Target For
Chagas' Disease
Length = 302
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 1097 RSGTLIALDRILQSINHSDVVD--IFGIVYHMRKERVWMVQTEQQYICIHQCLLAVL 1151
R+GTLI L + + D ++ +V MR++R MVQ +QY I+ L+ L
Sbjct: 232 RTGTLIGAYAALTHLERGTLTDTTVYDVVSAMRRQRFGMVQRMEQYFVIYLTLMCRL 288
>pdb|2HA1|A Chain A, Complex Of The First And Second Type Iii Domains Of Human
Fibronectin In Solution
Length = 201
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 563 TRINATEITDTSVSLTWDSPRGEYNAFEVQY-LNTEGFLIQNLTL---HTSIVIGDLKPH 618
T + TEIT +S ++W S + F V+Y L+ EG Q L L TS+ I DL P
Sbjct: 116 TSESVTEITASSFVVSWVSASDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPG 175
Query: 619 RNYTFTV--IVRSGTESSVLRRS 639
R Y V I G +S +L S
Sbjct: 176 RKYIVNVYQISEDGEQSLILSTS 198
>pdb|1P9M|A Chain A, Crystal Structure Of The Hexameric Human Il-6/il-6 Alpha
Receptor/gp130 Complex
Length = 299
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 265 GLRSEPHDYFQAVY---PKPPTNLTLEKTSSNAVLVK--WKEPV--GSIFTEYSIRYRTE 317
G + H F VY P PP NL++ + + ++K W P I +Y+I+YRT+
Sbjct: 183 GKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTK 242
Query: 318 EDKTWVRLP 326
+ TW ++P
Sbjct: 243 DASTWSQIP 251
>pdb|2OCF|D Chain D, Human Estrogen Receptor Alpha Ligand-Binding Domain In
Complex With Estradiol And The E2#23 Fn3 Monobody
Length = 121
Score = 34.7 bits (78), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 44/90 (48%), Gaps = 5/90 (5%)
Query: 563 TRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEG-FLIQNLTL---HTSIVIGDLKPH 618
T++ T TS+ ++WD+P + + Y T G +Q T+ ++ I LKP
Sbjct: 33 TKLEVVAATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPG 92
Query: 619 RNYTFTVIVRSGTESSVLRRSLPVSAIFQT 648
+YT TV +G +L S P+S ++T
Sbjct: 93 VDYTITVYAVTGLR-LMLAGSKPISINYRT 121
>pdb|2H41|A Chain A, Solution Structure Of The Second Type Iii Domain Of Human
Fibronectin: Minimized Average Structure
pdb|2H45|A Chain A, Solution Structure Of The Second Type Iii Domain Of Human
Fibronectin: Ensemble Of 25 Structures
Length = 95
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 563 TRINATEITDTSVSLTWDSPRGEYNAFEVQY-LNTEGFLIQNLTL---HTSIVIGDLKPH 618
T + TEIT +S ++W S + F V+Y L+ EG Q L L TS+ I DL P
Sbjct: 10 TSESVTEITASSFVVSWVSASDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPG 69
Query: 619 RNYTFTV--IVRSGTESSVLRRS 639
R Y V I G +S +L S
Sbjct: 70 RKYIVNVYQISEDGEQSLILSTS 92
>pdb|1I1R|A Chain A, Crystal Structure Of A CytokineRECEPTOR COMPLEX
Length = 303
Score = 34.7 bits (78), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 265 GLRSEPHDYFQAVY---PKPPTNLTLEKTSSNAVLVK--WKEPV--GSIFTEYSIRYRTE 317
G + H F VY P PP NL++ + + ++K W P I +Y+I+YRT+
Sbjct: 183 GKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTK 242
Query: 318 EDKTWVRLP 326
+ TW ++P
Sbjct: 243 DASTWSQIP 251
>pdb|1QR4|A Chain A, Two Fibronectin Type-Iii Domain Segment From Chicken
Tenascin
pdb|1QR4|B Chain B, Two Fibronectin Type-Iii Domain Segment From Chicken
Tenascin
Length = 186
Score = 34.3 bits (77), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 59/134 (44%), Gaps = 18/134 (13%)
Query: 152 NGDSNQMF--VDKTEYVLESLLPGRKYSINVQA-------------VSNGMESPSFPIIE 196
+G N+M VD T ++L L G +Y+I++ A S + SP
Sbjct: 45 SGKKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFS 104
Query: 197 DLRPIEFGLNISWKSDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYS 256
D+ E +SW + SR D++ V Y T + +TV + ++ L L PG Y+
Sbjct: 105 DI--TENSATVSW-TPPRSRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYN 161
Query: 257 IQVFAISHGLRSEP 270
+ + ++ SEP
Sbjct: 162 VNIISVKGFEESEP 175
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 8/87 (9%)
Query: 565 INATEITDTSVSLTWDSPRGEYNAFEVQYLNTEGFLIQNLTL---HTSIVIGDLKPHRNY 621
I+ ++IT+ S +++W PR +++ V Y+ G +T+ T + L P +Y
Sbjct: 101 ISFSDITENSATVSWTPPRSRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDY 160
Query: 622 TFTVIVRSGTESSVLRRSLPVSAIFQT 648
+I G E S P+S I +T
Sbjct: 161 NVNIISVKGFE-----ESEPISGILKT 182
Score = 30.0 bits (66), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 34/168 (20%), Positives = 68/168 (40%), Gaps = 12/168 (7%)
Query: 200 PIEFGLNISWKSDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQV 259
P E L++ W+ V ++ D + + Y + + ++ + + + +L L G Y+I +
Sbjct: 18 PTETTLSLRWRRPV-AKFDRYRLTY-VSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISL 75
Query: 260 FAISHGLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEED 319
A +S+P + P ++ + N+ V W P + Y + Y
Sbjct: 76 VAEKGRHKSKPTTIKGSTVVGSPKGISFSDITENSATVSWTPPRSRV-DSYRVSYVPITG 134
Query: 320 KTWVRLPNV----GTSLEAEVTDMVPGEKCMIQVNSVSYSVESAHPLQ 363
T PNV G+ ++ +VPG + + SV E + P+
Sbjct: 135 GT----PNVVTVDGSKTRTKLVKLVPGVDYNVNIISVK-GFEESEPIS 177
>pdb|3M4U|A Chain A, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
pdb|3M4U|B Chain B, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
Length = 306
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 1097 RSGTLIALDRILQSINHSDVVD--IFGIVYHMRKERVWMVQTEQQYICIHQCLLAVL 1151
R+GTLI L I + D ++ IV M+++R MVQ +QY I+ +L L
Sbjct: 235 RTGTLIGAYAALLHIERGILTDSTVYSIVAAMKQKRFGMVQRLEQYAVIYMTVLGRL 291
>pdb|3L5H|A Chain A, Crystal Structure Of The Full Ectodomain Of Human Gp130:
New Insights Into The Molecular Assembly Of Receptor
Complexes
Length = 589
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 265 GLRSEPHDYFQAVY---PKPPTNLTLEKTSSNAVLVK--WKEPV--GSIFTEYSIRYRTE 317
G + H F VY P PP NL++ + + ++K W P I +Y+I+YRT+
Sbjct: 182 GKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTK 241
Query: 318 EDKTWVRLP 326
+ TW ++P
Sbjct: 242 DASTWSQIP 250
>pdb|1TEN|A Chain A, Structure Of A Fibronectin Type Iii Domain From Tenascin
Phased By Mad Analysis Of The Selenomethionyl Protein
Length = 90
Score = 34.3 bits (77), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 563 TRINATEITDTSVSLTWDSPRGEYNAFEVQY----LNTEGFLIQNLTLHTSIVIGDLKPH 618
++I ++TDT+ +TW P E + E+ Y + + I IG+LKP
Sbjct: 6 SQIEVKDVTDTTALITWFKPLAEIDGIELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPD 65
Query: 619 RNYTFTVIVRSGTESS 634
Y ++I R G SS
Sbjct: 66 TEYEVSLISRRGDMSS 81
>pdb|4GS7|C Chain C, Structure Of The Interleukin-15 Quaternary Complex
Length = 203
Score = 33.9 bits (76), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 277 VYPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWV 323
V P P NLTL K S + + + W + E+ ++YRT+ D +W
Sbjct: 101 VIPWAPENLTLHKLSESQLELNWNNRFLNHCLEHLVQYRTDWDHSWT 147
>pdb|2RB8|A Chain A, High Resolution Design Of A Protein Loop
Length = 104
Score = 33.9 bits (76), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 563 TRINATEITDTSVSLTWDSPRGEYNAFEVQY----LNTEGFLIQNLTLHTSIVIGDLKPH 618
++I ++TDT+ +TW P + FE+ Y + + I IG+LKP
Sbjct: 7 SQIEVKDVTDTTALITWMPPSQPVDGFELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPD 66
Query: 619 RNYTFTVIVRSGTESS 634
Y ++I R G SS
Sbjct: 67 TEYEVSLISRRGDMSS 82
>pdb|3QB7|C Chain C, Interleukin-4 Mutant Rga Bound To Cytokine Receptor Common
Gamma
pdb|3QB7|D Chain D, Interleukin-4 Mutant Rga Bound To Cytokine Receptor Common
Gamma
Length = 203
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 277 VYPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWV 323
V P P NLTL K S + + + W + E+ ++YRT+ D +W
Sbjct: 101 VIPWAPENLTLHKLSESQLELNWNNRFLNHCLEHLVQYRTDWDHSWT 147
>pdb|3QAZ|C Chain C, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|F Chain F, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|I Chain I, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|L Chain L, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|O Chain O, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|R Chain R, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|U Chain U, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|X Chain X, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|AA Chain a, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|DD Chain d, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|GG Chain g, Il-2 Mutant D10 Ternary Complex
pdb|3QAZ|JJ Chain j, Il-2 Mutant D10 Ternary Complex
Length = 202
Score = 33.9 bits (76), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 277 VYPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWV 323
V P P NLTL K S + + + W + E+ ++YRT+ D +W
Sbjct: 100 VIPWAPENLTLHKLSESQLELNWNNRFLNHCLEHLVQYRTDWDHSWT 146
>pdb|2B5I|C Chain C, Cytokine Receptor Complex
pdb|3BPL|C Chain C, Crystal Structure Of The Il4-Il4r-Common Gamma Ternary
Complex
Length = 199
Score = 33.9 bits (76), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 277 VYPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWV 323
V P P NLTL K S + + + W + E+ ++YRT+ D +W
Sbjct: 97 VIPWAPENLTLHKLSESQLELNWNNRFLNHCLEHLVQYRTDWDHSWT 143
>pdb|2ERJ|C Chain C, Crystal Structure Of The Heterotrimeric Interleukin-2
Receptor In Complex With Interleukin-2
pdb|2ERJ|G Chain G, Crystal Structure Of The Heterotrimeric Interleukin-2
Receptor In Complex With Interleukin-2
Length = 247
Score = 33.9 bits (76), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 277 VYPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWV 323
V P P NLTL K S + + + W + E+ ++YRT+ D +W
Sbjct: 135 VIPWAPENLTLHKLSESQLELNWNNRFLNHCLEHLVQYRTDWDHSWT 181
>pdb|1PVH|A Chain A, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
pdb|1PVH|C Chain C, Crystal Structure Of Leukemia Inhibitory Factor In Complex
With Gp130
Length = 201
Score = 33.5 bits (75), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 265 GLRSEPHDYFQAVY---PKPPTNLTLEKTSSNAVLVK--WKEPV--GSIFTEYSIRYRTE 317
G + H F VY P PP NL++ + + ++K W P I +Y+I+YRT+
Sbjct: 83 GKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTK 142
Query: 318 EDKTWVRLP 326
+ TW ++P
Sbjct: 143 DASTWSQIP 151
>pdb|1BQU|A Chain A, Cytokyne-Binding Region Of Gp130
pdb|1BQU|B Chain B, Cytokyne-Binding Region Of Gp130
Length = 215
Score = 33.1 bits (74), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 265 GLRSEPHDYFQAVY---PKPPTNLTLEKTSSNAVLVK--WKEPV--GSIFTEYSIRYRTE 317
G + H F VY P PP NL++ + + ++K W P I +Y+I+YRT+
Sbjct: 87 GKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTK 146
Query: 318 EDKTWVRLP 326
+ TW ++P
Sbjct: 147 DASTWSQIP 155
>pdb|1BJ8|A Chain A, Third N-Terminal Domain Of Gp130, Nmr, Minimized Average
Structure
Length = 109
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Query: 277 VYPKPPTNLTLEKTSSNAVLVK--WKEPV--GSIFTEYSIRYRTEEDKTWVRLP 326
V P PP NL++ + + ++K W P I +Y+I+YRT++ TW ++P
Sbjct: 4 VKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIP 57
>pdb|1YP2|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP2|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase
pdb|1YP3|A Chain A, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|B Chain B, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|C Chain C, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP3|D Chain D, Crystal Structure Of Potato Tuber Adp-Glucose
Pyrophosphorylase In Complex With Atp
pdb|1YP4|A Chain A, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|B Chain B, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|C Chain C, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
pdb|1YP4|D Chain D, Crystal Structure Of Potato Tuber Adp-glucose
Pyrophosphorylase In Complex With Adp-glucose
Length = 451
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 13/126 (10%)
Query: 235 ITVVTTDSKL-LLENLYPGA---GYSIQVFAISHGLRSEPHDYFQAVYPKPPTNLTLEKT 290
I V++ D L LL + +PGA G + A S G+R + + +Y ++ +
Sbjct: 232 IYVISKDVMLNLLRDKFPGANDFGSEVIPGATSLGMRVQAY-----LYDGYWEDIGTIEA 286
Query: 291 SSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQVN 350
NA L K+PV ++S R+ T R L+A+VTD V GE C+I+
Sbjct: 287 FYNANLGITKKPV----PDFSFYDRSAPIYTQPRYLPPSKMLDADVTDSVIGEGCVIKNC 342
Query: 351 SVSYSV 356
+ +SV
Sbjct: 343 KIHHSV 348
>pdb|3TEU|A Chain A, Crystal Structure Of Fibcon
Length = 98
Score = 32.0 bits (71), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 4/67 (5%)
Query: 563 TRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEG-FLIQNLTL---HTSIVIGDLKPH 618
T + T +TDTS++++W P + + Y + G + LT+ TS+ I L P
Sbjct: 6 TDLQVTNVTDTSITVSWTPPSATITGYRITYTPSNGPGEPKELTVPPSSTSVTITGLTPG 65
Query: 619 RNYTFTV 625
Y +V
Sbjct: 66 VEYVVSV 72
>pdb|1X5G|A Chain A, The Solution Structure Of The Second Fibronectin Type Iii
Domain Of Human Neogenin
Length = 116
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 559 PEPITRINATEITDTSVSLTWDSP---RGEYNAFEVQYLNTEGFLIQNLTLHT-SIVIGD 614
P P + A + TS+++TW++P GE +++ Y+ Q++ + + S I
Sbjct: 18 PGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDVSSHSYTING 77
Query: 615 LKPHRNYTFTVIV 627
LK + Y+F V+
Sbjct: 78 LKKYTEYSFRVVA 90
>pdb|4HUK|B Chain B, Mate Transporter Norm-ng In Complex With Tpp And Monobody
pdb|4HUL|B Chain B, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
pdb|4HUM|B Chain B, Mate Transporter Norm-ng In Complex With Ethidium And
Monobody
pdb|4HUN|B Chain B, Mate Transporter Norm-ng In Complex With R6g And Monobody
Length = 99
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 2/95 (2%)
Query: 273 YFQAVYPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNV-GTS 331
YFQ PT L + + ++L+ W + G Y I Y + V+ V G+S
Sbjct: 4 YFQGSVSSVPTKLEVVAATPTSLLISW-DARGEYVVYYRITYGETGGNSPVQEFTVPGSS 62
Query: 332 LEAEVTDMVPGEKCMIQVNSVSYSVESAHPLQINH 366
A ++ + PG I V + SY P+ IN+
Sbjct: 63 STATISGLSPGVDYTITVYARSYYWGWYSPISINY 97
>pdb|1FNA|A Chain A, Crystal Structure Of The Tenth Type Iii Cell Adhesion
Module Of Human Fibronectin
Length = 91
Score = 31.6 bits (70), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 571 TDTSVSLTWDSPRGEYNAFEVQYLNTEG-FLIQNLTL---HTSIVIGDLKPHRNYTFTVI 626
T TS+ ++WD+P + + Y T G +Q T+ ++ I LKP +YT TV
Sbjct: 9 TPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVY 68
Query: 627 VRSGTESSVLRRSLPVSAIFQTH 649
+G S S P+S ++T
Sbjct: 69 AVTGRGDSPA-SSKPISINYRTE 90
>pdb|1MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 20 Structures
pdb|2MFN|A Chain A, Solution Nmr Structure Of Linked Cell Attachment Modules
Of Mouse Fibronectin Containing The Rgd And Synergy
Regions, 10 Structures
Length = 184
Score = 31.6 bits (70), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 32/116 (27%), Positives = 53/116 (45%), Gaps = 17/116 (14%)
Query: 162 KTEYVLESLLPGRKYSINVQAVSNGMESPSF--------PIIEDLRPIE---FGLNISWK 210
+ L +L PG +Y +++ AV+ ESP I DL I L ISW+
Sbjct: 54 RNSITLTNLNPGTEYVVSIIAVNGREESPPLIGQQATVSDIPRDLEVIASTPTSLLISWE 113
Query: 211 SDVNSRQDNFEVIYNRNDTITEDPI---TVVTTDSKLLLENLYPGAGYSIQVFAIS 263
S + + + Y +T P+ TV + S + N+ PGA Y+I ++A++
Sbjct: 114 PPAVSVR-YYRITYG--ETGGNSPVQEFTVPGSKSTATINNIKPGADYTITLYAVT 166
Score = 31.2 bits (69), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 71/181 (39%), Gaps = 11/181 (6%)
Query: 282 PTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEA-EVTDMV 340
PT ++N+ V W P I T Y IR+ E R V S + +T++
Sbjct: 5 PTGFDSSDITANSFTVHWVAPRAPI-TGYIIRHHAEHSVGRPRQDRVPPSRNSITLTNLN 63
Query: 341 PGEKCMIQVNSVSYSVESAHPLQINHTISPNPATYVAALVDASNVTLEFPRPEGRIEYYL 400
PG + ++ + +V+ ES + T+S P +++ + + P + YY
Sbjct: 64 PGTEYVVSIIAVNGREESPPLIGQQATVSDIPRDLEVIASTPTSLLISWEPPAVSVRYYR 123
Query: 401 VTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGVT 460
+T+ G + E P K I+ + PG Y T+ V+ +S +
Sbjct: 124 ITYGETGGNSPVQEFTV------PGSKSTAT---INNIKPGADYTITLYAVTGRGDSPAS 174
Query: 461 S 461
S
Sbjct: 175 S 175
>pdb|2CK2|A Chain A, Structure Of Core-Swapped Mutant Of Fibronectin
pdb|2CK2|B Chain B, Structure Of Core-Swapped Mutant Of Fibronectin
Length = 96
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Query: 565 INATEITDTSVSLTWDSPRGEYNAFEVQYLNTEG-FLIQNLTL---HTSIVIGDLKPHRN 620
I +T TS ++WD+P + Y T G +Q +TL ++ I LKP +
Sbjct: 8 IEVVAVTPTSALISWDAPAVTIRYIRLTYGETGGNSPVQEITLPGSKSTYTISGLKPGTD 67
Query: 621 YTFTVIVRSGTESSVLRRSLPVSAIFQTH 649
YT T+ +G S S P S F+T
Sbjct: 68 YTVTLYSVTGRGDS-PASSKPASINFRTE 95
>pdb|1TTF|A Chain A, The Three-Dimensional Structure Of The Tenth Type Iii
Module Of Fibronectin: An Insight Into Rgd-Mediated
Interactions
pdb|1TTG|A Chain A, The Three-Dimensional Structure Of The Tenth Type Iii
Module Of Fibronectin: An Insight Into Rgd-Mediated
Interactions
Length = 94
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 40/82 (48%), Gaps = 5/82 (6%)
Query: 571 TDTSVSLTWDSPRGEYNAFEVQYLNTEG-FLIQNLTL---HTSIVIGDLKPHRNYTFTVI 626
T TS+ ++WD+P + + Y T G +Q T+ ++ I LKP +YT TV
Sbjct: 14 TPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVY 73
Query: 627 VRSGTESSVLRRSLPVSAIFQT 648
+G S S P+S ++T
Sbjct: 74 AVTGRGDS-PASSKPISINYRT 94
>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
pdb|3UTO|B Chain B, Twitchin Kinase Region From C.Elegans
(Fn31-Nl-Kin-Crd-Ig26)
Length = 573
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTW 322
P+PP +E AV++ WK P GS+ T Y+I R +W
Sbjct: 10 PEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSW 56
>pdb|1X5H|A Chain A, The Solution Structure Of The Third Fibronectin Type Iii
Domain Of Human Neogenin
Length = 132
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Query: 282 PTNLTLEKTSSNAVLVKWKEPVGSI----FTEYSIRYRTEEDKT 321
P NL+LE +S ++++ W+ P + T Y IRYR K+
Sbjct: 22 PQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKS 65
>pdb|2V5Y|A Chain A, Crystal Structure Of The Receptor Protein Tyrosine
Phosphatase Mu Ectodomain
Length = 731
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 11/108 (10%)
Query: 394 GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSY 453
G I Y +T++ + + E+ N + H L L PG Y FTIR +
Sbjct: 491 GVITLYEITYKAV--SSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTA 548
Query: 454 N------LESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQNS 495
T +SA +MP E E + Q+ ++VT+ P +S
Sbjct: 549 KGFGPPATNQFTTKISAPSMPAYELETPL---NQTDNTVTVMLKPAHS 593
>pdb|2LFG|A Chain A, Solution Structure Of The Human Prolactin Receptor Ecd
Domain D2
Length = 113
Score = 30.8 bits (68), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 35/84 (41%), Gaps = 11/84 (13%)
Query: 277 VYPKPPTNLTLE----KTSSNAVLVKWKEPV------GSIFTEYSIRYRTEEDKTWVRLP 326
V P PP L +E + + +KW P G Y IR + E+ W +
Sbjct: 4 VQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEW-EIH 62
Query: 327 NVGTSLEAEVTDMVPGEKCMIQVN 350
G E ++ + PG+K ++QV
Sbjct: 63 FAGQQTEFKILSLHPGQKYLVQVR 86
>pdb|2CUI|A Chain A, Solution Structure Of The 31st Fibronectin Type Iii Domain
Of The Human Tenascin X
Length = 112
Score = 30.8 bits (68), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 8/32 (25%), Positives = 25/32 (78%)
Query: 562 ITRINATEITDTSVSLTWDSPRGEYNAFEVQY 593
+++++ T++T +S+ L W++P G +++F +++
Sbjct: 12 LSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRF 43
>pdb|1X5Z|A Chain A, Solution Structure Of The Fibronectin Type-Iii Domain Of
Human Protein Tyrosine Phosphatase, Receptor Type, D
Isoform 4 Variant
Length = 115
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 571 TDTSVSLTWDSPRGEYNA-FEVQYLNTEGFLIQNLTLH--TSIVIGDLKPHRNYTFTVIV 627
++TS+ L+W PR + A +E+ Y + E Q +T+ TS + LKP+ Y F +
Sbjct: 30 SETSILLSWTPPRSDTIANYELVYKDGEHGEEQRITIEPGTSYRLQGLKPNSLYYFRLAA 89
Query: 628 RS 629
RS
Sbjct: 90 RS 91
>pdb|3MZG|B Chain B, Crystal Structure Of A Human Prolactin Receptor Antagonist
In Complex With The Extracellular Domain Of The Human
Prolactin Receptor
pdb|3N06|B Chain B, A Mutant Human Prolactin Receptor Antagonist H27a In
Complex With The Extracellular Domain Of The Human
Prolactin Receptor
pdb|3N0P|B Chain B, A Mutant Human Prolactin Receptor Antagonist H30a In
Complex With The Extracellular Domain Of The Human
Prolactin Receptor
pdb|3NCB|B Chain B, A Mutant Human Prolactin Receptor Antagonist H180a In
Complex With The Extracellular Domain Of The Human
Prolactin Receptor
Length = 210
Score = 30.4 bits (67), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 277 VYPKPPTNLTLE----KTSSNAVLVKWKEPV------GSIFTEYSIRYRTEEDKTWVRLP 326
V P PP L +E + + +KW P G Y IR + E+ W +
Sbjct: 101 VQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEW-EIH 159
Query: 327 NVGTSLEAEVTDMVPGEKCMIQV 349
G E ++ + PG+K ++QV
Sbjct: 160 FAGQQTEFKILSLHPGQKYLVQV 182
>pdb|1X5L|A Chain A, Solution Structure Of The Second Fn3 Domain Of Eph
Receptor A8 Protein
Length = 111
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 559 PEPITRINATEITDTSVSLTW---DSPRGEYNAFEVQYLNTEGFLIQNLTLH---TSIVI 612
P + I TSVSL W + P G +E++Y + + TL T +
Sbjct: 11 PSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATV 70
Query: 613 GDLKPHRNYTFTVIVRS 629
LKP Y F V R+
Sbjct: 71 SGLKPGTRYVFQVRART 87
>pdb|3D48|R Chain R, Crystal Structure Of A Prolactin Receptor Antagonist Bound
To The Extracellular Domain Of The Prolactin Receptor
Length = 211
Score = 30.4 bits (67), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 277 VYPKPPTNLTLE----KTSSNAVLVKWKEPV------GSIFTEYSIRYRTEEDKTWVRLP 326
V P PP L +E + + +KW P G Y IR + E+ W +
Sbjct: 102 VQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEW-EIH 160
Query: 327 NVGTSLEAEVTDMVPGEKCMIQV 349
G E ++ + PG+K ++QV
Sbjct: 161 FAGQQTEFKILSLHPGQKYLVQV 183
>pdb|1BP3|B Chain B, The Xray Structure Of A Growth Hormone-Prolactin Receptor
Complex
Length = 211
Score = 30.4 bits (67), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 277 VYPKPPTNLTLE----KTSSNAVLVKWKEPV------GSIFTEYSIRYRTEEDKTWVRLP 326
V P PP L +E + + +KW P G Y IR + E+ W +
Sbjct: 101 VQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEW-EIH 159
Query: 327 NVGTSLEAEVTDMVPGEKCMIQV 349
G E ++ + PG+K ++QV
Sbjct: 160 FAGQQTEFKILSLHPGQKYLVQV 182
>pdb|2EE2|A Chain A, Solution Structures Of The Fn3 Domain Of Human Contactin 1
Length = 119
Score = 30.4 bits (67), Expect = 6.7, Method: Composition-based stats.
Identities = 18/72 (25%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 282 PTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWV--RLPNVGTSLEAEVTDM 339
PT + ++ SS+ + V W+ + I Y IRY DK R+ A + ++
Sbjct: 22 PTEVGVKVLSSSEISVHWEHVLEKIVESYQIRYWAAHDKEEAANRVQVTSQEYSARLENL 81
Query: 340 VPGEKCMIQVNS 351
+P + I+V +
Sbjct: 82 LPDTQYFIEVGA 93
>pdb|3NCC|B Chain B, A Human Prolactin Receptor Antagonist In Complex With The
Mutant Extracellular Domain H188a Of The Human Prolactin
Receptor
pdb|3NCE|B Chain B, A Mutant Human Prolactin Receptor Antagonist H27a In
Complex With The Mutant Extracellular Domain H188a Of
The Human Prolactin Receptor
pdb|3NCF|B Chain B, A Mutant Human Prolactin Receptor Antagonist H30a In
Complex With The Mutant Extracellular Domain H188a Of
The Human Prolactin Receptor
Length = 210
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 11/83 (13%)
Query: 277 VYPKPPTNLTLE----KTSSNAVLVKWKEPV------GSIFTEYSIRYRTEEDKTWVRLP 326
V P PP L +E + + +KW P G Y IR + E+ W +
Sbjct: 101 VQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEW-EIH 159
Query: 327 NVGTSLEAEVTDMVPGEKCMIQV 349
G E ++ + PG+K ++QV
Sbjct: 160 FAGQQTEFKILSLHPGQKYLVQV 182
>pdb|3LB6|D Chain D, The Structure Of Il-13 In Complex With Il-13ralpha2
Length = 380
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 277 VYPKPPTNLTLEKTSSNAVLVKWKEPVGSI---FTEYSIRYRTEEDKTWV 323
V P PP LT + SS + +KW P+G I +Y I R E+D T V
Sbjct: 236 VKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIR-EDDTTLV 284
>pdb|3LB6|C Chain C, The Structure Of Il-13 In Complex With Il-13ralpha2
Length = 380
Score = 30.0 bits (66), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 277 VYPKPPTNLTLEKTSSNAVLVKWKEPVGSI---FTEYSIRYRTEEDKTWV 323
V P PP LT + SS + +KW P+G I +Y I R E+D T V
Sbjct: 236 VKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIR-EDDTTLV 284
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,228,132
Number of Sequences: 62578
Number of extensions: 1554799
Number of successful extensions: 4059
Number of sequences better than 100.0: 172
Number of HSP's better than 100.0 without gapping: 118
Number of HSP's successfully gapped in prelim test: 54
Number of HSP's that attempted gapping in prelim test: 3670
Number of HSP's gapped (non-prelim): 383
length of query: 1189
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1079
effective length of database: 8,089,757
effective search space: 8728847803
effective search space used: 8728847803
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)