Query psy4951
Match_columns 1189
No_of_seqs 607 out of 4368
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 22:05:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4951.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4951hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4221|consensus 100.0 1.2E-44 2.6E-49 424.1 55.2 542 190-771 428-1019(1381)
2 KOG4221|consensus 100.0 3.4E-41 7.5E-46 395.1 48.7 513 78-632 426-1006(1381)
3 KOG4228|consensus 100.0 5.6E-38 1.2E-42 370.4 24.2 595 465-1166 22-812 (1087)
4 KOG4228|consensus 100.0 2.3E-30 5.1E-35 306.3 9.7 207 945-1152 722-1086(1087)
5 KOG0791|consensus 100.0 1.7E-29 3.7E-34 264.8 9.0 152 1005-1156 74-359 (374)
6 KOG3513|consensus 100.0 2.1E-24 4.6E-29 257.7 52.8 395 337-767 584-1011(1051)
7 KOG0790|consensus 99.9 3.3E-28 7.2E-33 256.5 8.3 166 1005-1170 216-540 (600)
8 KOG3513|consensus 99.9 4.1E-22 9E-27 238.3 57.3 304 436-771 584-914 (1051)
9 PHA02740 protein tyrosine phos 99.9 1E-27 2.2E-32 261.8 6.7 141 1007-1154 7-291 (298)
10 PHA02742 protein tyrosine phos 99.9 1.8E-27 3.9E-32 262.7 8.1 146 1006-1155 6-300 (303)
11 PHA02746 protein tyrosine phos 99.9 1.1E-26 2.4E-31 258.1 8.9 145 1007-1153 7-316 (323)
12 PHA02747 protein tyrosine phos 99.9 1.7E-26 3.7E-31 255.7 8.7 148 1006-1156 6-304 (312)
13 PHA02738 hypothetical protein; 99.9 4.1E-26 8.8E-31 253.2 7.7 147 1004-1156 4-299 (320)
14 KOG0793|consensus 99.9 4.7E-22 1E-26 220.4 13.7 149 1003-1152 708-996 (1004)
15 KOG0792|consensus 99.9 8.3E-22 1.8E-26 230.7 12.0 127 1028-1155 869-1134(1144)
16 smart00194 PTPc Protein tyrosi 99.9 6.8E-22 1.5E-26 216.6 9.3 121 1028-1149 1-258 (258)
17 COG5599 PTP2 Protein tyrosine 99.8 2.7E-21 5.8E-26 193.0 6.3 107 1044-1152 44-295 (302)
18 cd00047 PTPc Protein tyrosine 99.7 2.5E-17 5.4E-22 177.6 6.6 53 1097-1149 179-231 (231)
19 PF00102 Y_phosphatase: Protei 99.6 2.9E-17 6.4E-22 178.5 1.2 53 1097-1149 183-235 (235)
20 KOG0196|consensus 99.6 7.7E-15 1.7E-19 168.1 19.7 196 549-773 322-537 (996)
21 KOG4222|consensus 99.6 6.5E-13 1.4E-17 157.9 27.7 309 432-766 475-839 (1281)
22 KOG4222|consensus 99.5 2.4E-11 5.2E-16 144.9 34.8 284 557-927 525-832 (1281)
23 KOG0789|consensus 99.5 4.5E-14 9.8E-19 167.2 9.8 138 1012-1153 87-369 (415)
24 KOG0196|consensus 99.4 1.4E-11 3E-16 142.0 19.4 180 190-369 332-535 (996)
25 PRK15375 pathogenicity island 99.2 1.5E-11 3.3E-16 137.2 6.0 52 1097-1152 479-531 (535)
26 KOG4258|consensus 99.1 1.2E-09 2.6E-14 126.6 14.3 337 282-632 491-910 (1025)
27 KOG4258|consensus 99.0 8.3E-09 1.8E-13 119.8 16.5 270 474-768 492-920 (1025)
28 PF00041 fn3: Fibronectin type 98.9 7E-09 1.5E-13 92.3 9.8 80 280-359 1-83 (85)
29 PF00041 fn3: Fibronectin type 98.8 2.4E-08 5.3E-13 88.8 9.0 82 672-763 3-85 (85)
30 PF10179 DUF2369: Uncharacteri 98.4 8.7E-05 1.9E-09 79.8 24.3 203 157-360 9-288 (300)
31 smart00404 PTPc_motif Protein 98.3 2.3E-07 4.9E-12 86.3 2.2 56 1094-1149 49-105 (105)
32 smart00012 PTPc_DSPc Protein t 98.3 2.3E-07 4.9E-12 86.3 2.2 56 1094-1149 49-105 (105)
33 PF10179 DUF2369: Uncharacteri 98.2 0.00057 1.2E-08 73.6 24.9 211 328-550 11-288 (300)
34 KOG4802|consensus 98.1 4.5E-05 9.7E-10 82.2 12.9 163 195-359 152-341 (516)
35 cd00063 FN3 Fibronectin type 3 98.0 4.3E-05 9.4E-10 68.3 11.1 82 279-360 1-85 (93)
36 KOG4802|consensus 97.8 0.00015 3.3E-09 78.2 11.6 166 279-455 145-338 (516)
37 smart00060 FN3 Fibronectin typ 97.8 0.00019 4.1E-09 62.2 9.9 77 280-356 2-81 (83)
38 cd00063 FN3 Fibronectin type 3 97.7 0.00017 3.7E-09 64.4 9.4 82 80-191 1-85 (93)
39 smart00060 FN3 Fibronectin typ 97.7 0.00023 5.1E-09 61.7 9.6 78 81-188 2-82 (83)
40 COG3401 Fibronectin type 3 dom 97.6 0.0068 1.5E-07 65.1 19.2 315 216-549 4-333 (343)
41 COG3401 Fibronectin type 3 dom 97.5 0.0063 1.4E-07 65.3 18.4 282 161-458 29-333 (343)
42 KOG3632|consensus 96.9 0.0044 9.6E-08 74.2 10.5 207 480-708 588-814 (1335)
43 PF01108 Tissue_fac: Tissue fa 96.6 0.013 2.8E-07 54.3 9.0 82 276-358 19-105 (107)
44 KOG0613|consensus 95.9 0.39 8.5E-06 61.0 19.4 508 203-761 154-713 (1205)
45 KOG3632|consensus 95.8 0.013 2.9E-07 70.4 6.1 214 562-847 581-814 (1335)
46 PF01108 Tissue_fac: Tissue fa 95.7 0.11 2.3E-06 48.2 10.4 80 467-549 21-106 (107)
47 TIGR00864 PCC polycystin catio 95.3 22 0.00048 50.2 47.2 102 523-632 1661-1767(2740)
48 PF09294 Interfer-bind: Interf 95.2 0.12 2.6E-06 47.8 9.3 68 560-629 4-88 (106)
49 KOG4367|consensus 95.1 0.018 3.9E-07 62.7 3.7 81 190-271 438-522 (699)
50 KOG4367|consensus 95.1 0.018 4E-07 62.6 3.6 74 290-364 450-525 (699)
51 KOG4152|consensus 94.9 0.12 2.6E-06 58.1 9.3 122 611-762 650-788 (830)
52 TIGR00864 PCC polycystin catio 94.7 30 0.00066 49.0 51.8 104 333-458 1661-1770(2740)
53 PF09294 Interfer-bind: Interf 94.7 0.15 3.2E-06 47.2 8.3 70 279-352 3-87 (106)
54 KOG4806|consensus 94.5 2.7 5.8E-05 45.6 17.6 115 433-550 286-438 (454)
55 KOG1720|consensus 94.5 0.024 5.1E-07 56.8 2.5 52 1097-1153 160-211 (225)
56 KOG1225|consensus 94.0 0.13 2.8E-06 60.4 7.4 149 197-349 374-524 (525)
57 PF15102 TMEM154: TMEM154 prot 93.7 0.13 2.9E-06 48.7 5.6 28 998-1025 114-141 (146)
58 KOG0613|consensus 93.7 1.9 4.2E-05 55.1 17.1 437 276-764 137-615 (1205)
59 KOG4806|consensus 93.1 6.8 0.00015 42.6 17.5 107 526-632 288-434 (454)
60 PTZ00242 protein tyrosine phos 91.4 0.086 1.9E-06 53.0 1.3 48 1094-1147 108-155 (166)
61 PF09067 EpoR_lig-bind: Erythr 89.5 3 6.5E-05 38.1 9.3 81 277-358 6-96 (104)
62 KOG4152|consensus 89.4 2.5 5.5E-05 48.0 10.4 66 337-402 652-725 (830)
63 COG4733 Phage-related protein, 89.2 7.7 0.00017 47.4 14.8 124 429-554 658-789 (952)
64 COG4733 Phage-related protein, 88.5 5.1 0.00011 48.9 12.7 164 281-461 609-787 (952)
65 KOG1225|consensus 86.6 0.84 1.8E-05 53.7 4.9 142 482-625 378-524 (525)
66 PF07353 Uroplakin_II: Uroplak 83.6 4.2 9E-05 38.9 7.0 74 900-975 100-176 (184)
67 PF02439 Adeno_E3_CR2: Adenovi 80.1 0.54 1.2E-05 33.1 -0.0 28 954-981 6-34 (38)
68 PF04478 Mid2: Mid2 like cell 78.4 3.1 6.7E-05 40.0 4.4 25 1008-1035 92-116 (154)
69 TIGR00868 hCaCC calcium-activa 78.2 2.1E+02 0.0046 36.7 23.8 73 680-759 766-854 (863)
70 PF08693 SKG6: Transmembrane a 73.2 4.3 9.2E-05 29.4 2.9 30 952-981 9-39 (40)
71 PLN02533 probable purple acid 72.7 17 0.00036 42.9 9.6 69 278-349 40-120 (427)
72 PTZ00393 protein tyrosine phos 71.4 2 4.3E-05 45.2 1.4 48 1094-1148 180-227 (241)
73 COG2453 CDC14 Predicted protei 71.2 2.6 5.7E-05 43.1 2.2 53 1097-1153 118-170 (180)
74 PLN02533 probable purple acid 71.1 34 0.00073 40.4 11.6 68 467-540 40-121 (427)
75 PF07495 Y_Y_Y: Y_Y_Y domain; 69.1 25 0.00054 28.8 7.3 23 609-632 30-52 (66)
76 PF09240 IL6Ra-bind: Interleuk 69.0 79 0.0017 28.5 11.2 79 281-359 1-88 (99)
77 PF07495 Y_Y_Y: Y_Y_Y domain; 68.5 16 0.00035 29.9 6.1 44 500-546 9-52 (66)
78 PF04478 Mid2: Mid2 like cell 67.8 3.4 7.4E-05 39.7 2.0 12 955-966 49-60 (154)
79 PF09067 EpoR_lig-bind: Erythr 66.7 22 0.00047 32.5 6.9 81 78-187 6-94 (104)
80 PF05393 Hum_adeno_E3A: Human 66.6 4.2 9.1E-05 34.6 2.0 32 950-981 29-60 (94)
81 PF08374 Protocadherin: Protoc 65.1 4.5 9.7E-05 41.2 2.3 30 952-981 35-64 (221)
82 PF12273 RCR: Chitin synthesis 63.9 3.1 6.8E-05 39.9 1.0 6 976-981 21-26 (130)
83 PF05454 DAG1: Dystroglycan (D 63.7 2.3 5E-05 46.3 0.0 31 956-986 149-179 (290)
84 PF01299 Lamp: Lysosome-associ 62.8 12 0.00026 42.0 5.6 15 912-926 241-255 (306)
85 PF01034 Syndecan: Syndecan do 61.6 2.6 5.7E-05 33.8 -0.0 21 954-974 12-32 (64)
86 KOG1948|consensus 61.4 4.3E+02 0.0093 33.4 23.3 47 308-354 922-968 (1165)
87 PF12273 RCR: Chitin synthesis 61.2 4.9 0.00011 38.6 1.7 13 972-984 14-26 (130)
88 PF01102 Glycophorin_A: Glycop 60.6 1.8 3.8E-05 40.5 -1.3 27 954-982 67-93 (122)
89 cd00127 DSPc Dual specificity 59.0 6 0.00013 38.3 2.0 48 1091-1143 88-135 (139)
90 PF15069 FAM163: FAM163 family 58.7 11 0.00023 36.0 3.3 28 954-981 5-32 (143)
91 KOG1948|consensus 57.4 5E+02 0.011 32.8 20.3 116 606-754 944-1063(1165)
92 PF10342 GPI-anchored: Ser-Thr 52.2 94 0.002 27.4 8.5 65 383-450 13-78 (93)
93 PF14575 EphA2_TM: Ephrin type 46.0 5.6 0.00012 33.8 -0.5 20 959-978 5-24 (75)
94 PF02010 REJ: REJ domain; Int 45.5 18 0.00039 43.2 3.5 24 526-549 154-177 (440)
95 KOG0792|consensus 45.2 5.2 0.00011 50.1 -1.1 55 1079-1138 915-973 (1144)
96 PF14292 SusE: SusE outer memb 42.4 1.9E+02 0.004 27.3 9.2 61 201-261 43-120 (122)
97 PF09240 IL6Ra-bind: Interleuk 41.9 2.6E+02 0.0056 25.1 11.8 72 561-632 1-85 (99)
98 PF06365 CD34_antigen: CD34/Po 41.3 18 0.00039 37.1 2.2 61 956-1018 101-163 (202)
99 PF12877 DUF3827: Domain of un 40.3 22 0.00048 42.5 3.0 25 950-974 265-289 (684)
100 PF02009 Rifin_STEVOR: Rifin/s 38.1 6.6 0.00014 43.2 -1.6 25 957-981 258-283 (299)
101 PHA02579 7 baseplate wedge sub 38.0 98 0.0021 37.9 7.6 77 280-359 6-92 (1030)
102 PF13908 Shisa: Wnt and FGF in 37.7 24 0.00052 36.0 2.5 23 953-975 77-99 (179)
103 TIGR00868 hCaCC calcium-activa 36.4 1.1E+03 0.023 30.7 23.1 32 373-404 759-795 (863)
104 PHA02740 protein tyrosine phos 35.3 10 0.00022 42.2 -0.7 39 1096-1138 88-126 (298)
105 PF15330 SIT: SHP2-interacting 35.3 13 0.00028 34.0 0.1 24 959-982 4-27 (107)
106 smart00195 DSPc Dual specifici 34.9 19 0.00041 34.8 1.2 48 1091-1143 85-132 (138)
107 PF06697 DUF1191: Protein of u 34.2 23 0.0005 38.2 1.7 26 956-981 215-240 (278)
108 PF01102 Glycophorin_A: Glycop 33.5 12 0.00026 35.1 -0.5 35 951-986 60-94 (122)
109 cd02848 Chitinase_N_term Chiti 33.2 2.2E+02 0.0047 26.1 7.3 30 164-194 71-100 (106)
110 PF08329 ChitinaseA_N: Chitina 32.8 99 0.0021 29.6 5.5 85 93-211 36-124 (133)
111 PTZ00382 Variant-specific surf 31.5 33 0.00072 30.8 2.0 11 955-965 66-76 (96)
112 PF07204 Orthoreo_P10: Orthore 30.9 26 0.00056 30.5 1.2 20 963-982 50-69 (98)
113 PF14054 DUF4249: Domain of un 30.1 6.7E+02 0.015 27.7 12.9 63 528-595 95-167 (298)
114 PF14292 SusE: SusE outer memb 29.6 4.3E+02 0.0092 24.8 9.5 69 283-351 35-120 (122)
115 PF10342 GPI-anchored: Ser-Thr 29.3 2.2E+02 0.0048 25.0 7.1 55 572-626 12-77 (93)
116 PF07213 DAP10: DAP10 membrane 26.5 28 0.00061 29.5 0.6 31 952-982 31-62 (79)
117 PF13750 Big_3_3: Bacterial Ig 24.5 7.1E+02 0.015 24.8 15.0 34 526-559 116-149 (158)
118 PF12191 stn_TNFRSF12A: Tumour 23.6 28 0.00061 32.3 0.1 21 961-981 85-105 (129)
119 PF05568 ASFV_J13L: African sw 23.5 41 0.00089 31.7 1.2 7 975-981 51-57 (189)
120 KOG3515|consensus 23.4 6.3E+02 0.014 31.9 11.4 151 161-321 568-735 (741)
121 PF00782 DSPc: Dual specificit 23.0 16 0.00036 35.0 -1.6 45 1096-1145 85-129 (133)
122 PTZ00382 Variant-specific surf 23.0 61 0.0013 29.2 2.1 30 951-981 66-95 (96)
123 cd02848 Chitinase_N_term Chiti 22.1 4E+02 0.0087 24.4 7.0 57 572-632 33-93 (106)
124 KOG1094|consensus 20.7 78 0.0017 37.8 2.9 32 950-981 386-417 (807)
125 PF15102 TMEM154: TMEM154 prot 20.6 37 0.0008 32.7 0.3 9 1029-1037 123-131 (146)
126 PF08374 Protocadherin: Protoc 20.6 71 0.0015 32.9 2.3 32 952-983 39-70 (221)
127 PF06024 DUF912: Nucleopolyhed 20.3 71 0.0015 29.1 2.0 11 956-966 63-73 (101)
No 1
>KOG4221|consensus
Probab=100.00 E-value=1.2e-44 Score=424.08 Aligned_cols=542 Identities=19% Similarity=0.275 Sum_probs=410.1
Q ss_pred CCCCc-eeeecccccEEEEEeeCCC--CCCceEEEEEEEeCCCCCccceEEeeeccEEEEcCCCCCCeEEEEEEEEeCCc
Q psy4951 190 PSFPI-IEDLRPIEFGLNISWKSDV--NSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAISHGL 266 (1189)
Q Consensus 190 P~~p~-~~~~~~~~~si~lsW~~p~--~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~s~~i~~L~p~t~Y~v~V~a~~~~~ 266 (1189)
|++|+ +.......+.|.++|.+|. ++.+..|.+.|.......++...........++.+|+|.+.|.|+|.|.|.-+
T Consensus 428 ~sap~~lv~~~~~srfi~~tw~~p~~~~g~i~~~~v~~~~~~~~rer~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g 507 (1381)
T KOG4221|consen 428 PSAPRDLVANLVSSRFIQLTWRPPAQISGNISTYTVFYKVEGDVRERLQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAG 507 (1381)
T ss_pred ccCCcceecccccceeEEEeecCccccCCCcceEEEEEecCCchhhhheeccCCceEEEeeecccceeEEEEEeccCccc
Confidence 34444 3444467889999999773 67889999998876655543333444448899999999999999999999533
Q ss_pred cCCc-eeeecccCCCCCcceEEEeeeCCeEEEEeeCCC--CCcccEEEEEEEeCCCcceEEeccCCCccEEEecCCCCCC
Q psy4951 267 RSEP-HDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGE 343 (1189)
Q Consensus 267 ~s~~-~~~~~~t~p~pP~~l~v~~~t~~sv~vsW~~p~--~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t 343 (1189)
...+ ..+...++|.+|..+.+...+..++.+.|.+|. |+.|++|++.|...+.+.+..+... .++++|.||.|.|
T Consensus 508 ~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I~~yk~~ys~~~~~~~~~~~~n--~~e~ti~gL~k~T 585 (1381)
T KOG4221|consen 508 SGESSAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGNGPITGYKLFYSEDDTGKELRVENN--ATEYTINGLEKYT 585 (1381)
T ss_pred CCccCCceEEecCCCCCccccccccCcceEEEEecCCCCCCCCceEEEEEEEcCCCCceEEEecC--ccEEEeecCCCcc
Confidence 2222 223445666666669999999999999999998 8899999999999877777666544 4899999999999
Q ss_pred eEEEEEEEEEcCccCCCceeEEe----ecCCCCccce-EEeecCcEEEEEeeCC-----CcceeEEEEEEEeeccCCCCc
Q psy4951 344 KCMIQVNSVSYSVESAHPLQINH----TISPNPATYV-AALVDASNVTLEFPRP-----EGRIEYYLVTWRGIGPEATST 413 (1189)
Q Consensus 344 ~Y~~~V~A~~~~g~s~~~~~~~~----~t~p~pp~~l-~~~~~~~sv~lsW~~p-----~g~i~~Y~V~~~~~~~~~~~~ 413 (1189)
+|.|+|.|.|..|.+..+..+.+ ..|..||.++ ....++++|+|+|.+| +|.+.+|+|+|+. .....
T Consensus 586 eY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsVrVsW~pP~~~t~ng~itgYkIRy~~---~~~~~ 662 (1381)
T KOG4221|consen 586 EYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSVRVSWLPPPSETQNGQITGYKIRYRK---LSRED 662 (1381)
T ss_pred ceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeEEEEccCCCcccccceEEEEEEEecc---cCccc
Confidence 99999999999888876554433 3466788888 6677889999999998 6889999999993 33333
Q ss_pred ceEeeeecCCCCCCCCceEEEecCCCCCCeEEEEEEEEeCCccCcceEEE-EEc--------CCCCccceEEEeeccCCC
Q psy4951 414 ELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGVTSLS-ART--------MPLIESEVLVVNNQQSTD 484 (1189)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~~~s~~~~~~-~~t--------~P~~p~~~~v~~~~~t~~ 484 (1189)
......+. ++.+.+.+.+|+|++.|.|+|.|.+-.|.++++... +.| .|.+|..+.+ ....+
T Consensus 663 ~~~~t~v~------~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~~d~~e~vp~~ps~l~~---~~g~~ 733 (1381)
T KOG4221|consen 663 EVNETVVK------GNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPESDLDERVPGKPSELHV---HPGSN 733 (1381)
T ss_pred ccceeecc------cchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCccccccccCCCCCceeee---ccCce
Confidence 22222222 266789999999999999999999987777665432 233 2233443444 34789
Q ss_pred EEEEEEEcCC--CCCeeEEEEEEEcCCC--CeEEEEecCCcceEEEeCCCCCCeEEEEEEEEeCCcCCCcEEEee--c--
Q psy4951 485 SVTLRYTPQN--SNHFDFYRFTLSEPDI--PVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTPIQRHD--R-- 556 (1189)
Q Consensus 485 sv~vsW~p~~--~g~i~~Y~V~~~~~~~--~~~~~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~~~~S~~~~~~~--~-- 556 (1189)
++.++|+|+. +-.+.+|+|.|+...+ ....+.+......+.|+.|+|+..|.|+++|+|..+.+.+..-.. +
T Consensus 734 si~vsW~Pp~~~~~~vrgY~ig~r~g~~~p~~~tIrl~~~~s~y~l~~Le~~~~YvVkL~AfNn~gdG~p~y~~~~tR~~ 813 (1381)
T KOG4221|consen 734 SIVVSWTPPPHPNIVVRGYKIGYRPGSGIPDTGTIRLDEKVSYYNLEQLEPNRDYVVKLRAFNNHGDGNPIYESVKTRSA 813 (1381)
T ss_pred eEEEEeCCCCChhhhhcceEEeeecccCCCCCccEEecceeeEEEEEecccCceEEEEEEEeccCCCCcceeeeeeeccC
Confidence 9999999765 3467899999965433 244566778889999999999999999999999877766654322 2
Q ss_pred --------cCCCCCcceEEEEEeCcEEEEEeeC-CCC--CCceEEEEEEcC--CC--eEEEeeccccEEEEcCCCCCCEE
Q psy4951 557 --------LYPEPITRINATEITDTSVSLTWDS-PRG--EYNAFEVQYLNT--EG--FLIQNLTLHTSIVIGDLKPHRNY 621 (1189)
Q Consensus 557 --------t~p~~P~~l~v~~v~~~sv~l~W~~-p~g--~i~~Y~V~~~~~--~~--~~~~~~~~~~~~~l~~L~p~t~Y 621 (1189)
++..+|..+++...+.++|.+.|.. .+. ....|.|.|... .+ ........+.++.+.+|+|.+.|
T Consensus 814 ~~~~~~v~tp~~ppvgv~A~~~S~tsI~v~w~~~~~~t~~~~~yTVr~~~~gi~~~~~~~~~~~t~ls~~v~glkpnt~y 893 (1381)
T KOG4221|consen 814 TDPTSPVDTPMLPPVGVRANALSSTSIRVTWADNKDQTTDNRIYTVRWSLTGIRNGTLYRYDNSTDLSYLVGGLKPNTPY 893 (1381)
T ss_pred CCcCCcCCCCCCCcccccccccccceEEEEEecCCCccccceEEEEEEeecccccceeEEEecccccceeccCcCcCChh
Confidence 1335778888888999999999998 443 567899999632 22 23345567889999999999999
Q ss_pred EEEEEEEeCCCcceeeeccceeEEEEeccCCCCCcccccccccceeecccccceeeeecc-cceEEEEecCCCCCCCCcc
Q psy4951 622 TFTVIVRSGTESSVLRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFFQAEKFHPIDVQ-PGDITFEWSLPGSEQNGVI 700 (1189)
Q Consensus 622 ~~~V~A~~~~g~~~~~~s~~~s~~~~T~~~~P~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~tsv~l~W~~P~~~~ng~i 700 (1189)
.|.|.++-.++ ...+...++..+|.+.+|..|+ .++++.... ++++.+.|.+|. ++||.|
T Consensus 894 Efav~~~~~~~---r~stwsmsv~~~tle~~P~sPP---------------~d~tv~p~e~P~~v~v~WqPp~-e~nG~I 954 (1381)
T KOG4221|consen 894 EFAVMVVKRNR---RESTWSMSVENRTLELVPSSPP---------------RDLTVQPDEKPTTVIVHWQPPT-EPNGEI 954 (1381)
T ss_pred hhhhhhhhccC---cCCcccceeeeeecccCCCCCC---------------hhceecccCCCCccccccCCCc-CCCCce
Confidence 99999876332 0144555667889998887653 466666554 799999999887 679999
Q ss_pred eEEEEEEeccCcccceeeeeeeeecCcceeeEEeC-CCCCCcccceEEEEEEEEEecCCCCccccceeeeec
Q psy4951 701 RKFTISYAQEAACNHNQRLHAKFQLPRVNSKKLKG-WPGTLRTDWRSYIYKLQAELGLHMEPETIWKQKMPI 771 (1189)
Q Consensus 701 ~~Y~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~pg~~~~~~t~Y~~~V~A~~~~G~g~~s~~~~~~t~ 771 (1189)
++|+|.|..+......+.....+. ++..++.+.+ .|+ +.|.|+|.|+|..|.|++|..+...++
T Consensus 955 ~~Yii~Ys~~~n~~~~dWt~~t~~-g~~L~~~v~~l~p~------t~yffkiQAr~~kG~gp~s~~v~y~t~ 1019 (1381)
T KOG4221|consen 955 TEYIIYYSTDGNTPEHDWTIETTA-GAELSHQVPNLDPD------TGYFFKIQARNEKGPGPFSSPVLYETS 1019 (1381)
T ss_pred eeEEEEEecCCCCchhhceeeecc-cchhhhccCCCCCC------CceEEEEEeeccCCCCccccceeeecc
Confidence 999999977765522222223366 7889999999 999 999999999999999999998888887
No 2
>KOG4221|consensus
Probab=100.00 E-value=3.4e-41 Score=395.12 Aligned_cols=513 Identities=19% Similarity=0.288 Sum_probs=381.7
Q ss_pred CCCCCccceEEEecCCCCeEEEEeecCCC--CCcceEEEEeeehhhHhHhhhhhhccccccCCCCCceeeeeecccCCCc
Q psy4951 78 PEPLPVLDLTAVMDDKTGDLFISWKPDNA--SYQDMYKISIKSILLEEEHQKQFLMGFLGDCDNGSKISYVEIETLNGDS 155 (1189)
Q Consensus 78 ~~p~~P~~l~~~~~~s~~sv~l~W~~p~~--~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (1189)
..|.+|..+.+.. ++.+.+.++|.+|-. +.+..|.+ |+..+...+..
T Consensus 426 ~~~sap~~lv~~~-~~srfi~~tw~~p~~~~g~i~~~~v------------------------------~~~~~~~~rer 474 (1381)
T KOG4221|consen 426 LLPSAPRDLVANL-VSSRFIQLTWRPPAQISGNISTYTV------------------------------FYKVEGDVRER 474 (1381)
T ss_pred ccccCCcceeccc-ccceeEEEeecCccccCCCcceEEE------------------------------EEecCCchhhh
Confidence 6677899999988 899999999997743 67788888 22222222211
Q ss_pred -eeeecCccEEEEccCCCCCeEEEEEEEeeCCCCC-----------CCCCc-eeeecccccEEEEEeeCCC--CCCceEE
Q psy4951 156 -NQMFVDKTEYVLESLLPGRKYSINVQAVSNGMES-----------PSFPI-IEDLRPIEFGLNISWKSDV--NSRQDNF 220 (1189)
Q Consensus 156 -~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~g~s-----------P~~p~-~~~~~~~~~si~lsW~~p~--~~~i~~Y 220 (1189)
..........++.+|+|.+.|.|+|.|.|..|.+ |..|. +.....+..+|.+.|.+|. |++|.+|
T Consensus 475 ~~~tss~g~~~tv~nl~p~t~Y~~rv~A~n~~g~g~sS~pLkV~t~pEgp~~~~a~ats~~ti~v~WepP~~~n~~I~~y 554 (1381)
T KOG4221|consen 475 LQNTSSPGIQVTVQNLSPLTMYFFRVRAKNEAGSGESSAPLKVTTQPEGPVQLQAYATSPTTILVTWEPPPFGNGPITGY 554 (1381)
T ss_pred heeccCCceEEEeeecccceeEEEEEeccCcccCCccCCceEEecCCCCCccccccccCcceEEEEecCCCCCCCCceEE
Confidence 2233334889999999999999999999998877 33232 4555678899999999985 8999999
Q ss_pred EEEEEeCCCCCccceEEeeeccEEEEcCCCCCCeEEEEEEEEeCCc---cCCcee-eeccc-CCCCCcceEEEeeeCCeE
Q psy4951 221 EVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAISHGL---RSEPHD-YFQAV-YPKPPTNLTLEKTSSNAV 295 (1189)
Q Consensus 221 ~V~~~~~~~~~~~~~~~~~~~~s~~i~~L~p~t~Y~v~V~a~~~~~---~s~~~~-~~~~t-~p~pP~~l~v~~~t~~sv 295 (1189)
++.|...+...+ ..+..+.++++|.||.|.|+|.|+|.|+|..+ .|.... .+... |.+||.||++...++++|
T Consensus 555 k~~ys~~~~~~~--~~~~~n~~e~ti~gL~k~TeY~~~vvA~N~~G~g~sS~~i~V~Tlsd~PsaPP~Nl~lev~sStsV 632 (1381)
T KOG4221|consen 555 KLFYSEDDTGKE--LRVENNATEYTINGLEKYTEYSIRVVAYNSAGSGVSSADITVRTLSDVPSAPPQNLSLEVVSSTSV 632 (1381)
T ss_pred EEEEEcCCCCce--EEEecCccEEEeecCCCccceEEEEEEecCCCCCCCCCceEEEeccCCCCCCCcceEEEecCCCeE
Confidence 999988855554 78889999999999999999999999999533 333322 33344 446778899999999999
Q ss_pred EEEeeCCC----CCcccEEEEEEEeCCCcceE-EeccCCCccEEEecCCCCCCeEEEEEEEEEcCccCCCceeEEeec--
Q psy4951 296 LVKWKEPV----GSIFTEYSIRYRTEEDKTWV-RLPNVGTSLEAEVTDMVPGEKCMIQVNSVSYSVESAHPLQINHTI-- 368 (1189)
Q Consensus 296 ~vsW~~p~----~g~i~~Y~V~~~~~~~~~~~-~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~~~~~~t-- 368 (1189)
+|+|.+|. +|.+.+|+|+|+........ .....+..+++.+++|+|+|.|.|+|.|.+..|.++.+....+.|
T Consensus 633 rVsW~pP~~~t~ng~itgYkIRy~~~~~~~~~~~t~v~~n~~~~l~~~Lep~T~Y~vrIsa~t~nGtGpaS~w~~aeT~~ 712 (1381)
T KOG4221|consen 633 RVSWLPPPSETQNGQITGYKIRYRKLSREDEVNETVVKGNTTQYLFNGLEPNTQYRVRISAMTVNGTGPASEWVSAETPE 712 (1381)
T ss_pred EEEccCCCcccccceEEEEEEEecccCcccccceeecccchhhhHhhcCCCCceEEEEEEEeccCCCCCcccceeccCcc
Confidence 99999997 78999999999966433222 222333568999999999999999999999999988766655444
Q ss_pred ------CCCCccceEEeecCcEEEEEeeCCC---cceeEEEEEEEeeccCCCCcceEeeeecCCCCCCCCceEEEecCCC
Q psy4951 369 ------SPNPATYVAALVDASNVTLEFPRPE---GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLT 439 (1189)
Q Consensus 369 ------~p~pp~~l~~~~~~~sv~lsW~~p~---g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~ 439 (1189)
.|.+|..+.......++.++|.||. -.+.+|+|.|+ +..+........+. .....|.|..|.
T Consensus 713 ~d~~e~vp~~ps~l~~~~g~~si~vsW~Pp~~~~~~vrgY~ig~r---~g~~~p~~~tIrl~------~~~s~y~l~~Le 783 (1381)
T KOG4221|consen 713 SDLDERVPGKPSELHVHPGSNSIVVSWTPPPHPNIVVRGYKIGYR---PGSGIPDTGTIRLD------EKVSYYNLEQLE 783 (1381)
T ss_pred ccccccCCCCCceeeeccCceeEEEEeCCCCChhhhhcceEEeee---cccCCCCCccEEec------ceeeEEEEEecc
Confidence 2345555666777899999999983 45899999997 33332222223333 367899999999
Q ss_pred CCCeEEEEEEEEeCCccCcceEEEEEcC--CC--------CccceEEEeeccCCCEEEEEEEcC--CCCCeeEEEEEEEc
Q psy4951 440 PGVKYQFTIRTVSYNLESGVTSLSARTM--PL--------IESEVLVVNNQQSTDSVTLRYTPQ--NSNHFDFYRFTLSE 507 (1189)
Q Consensus 440 p~t~Y~v~V~a~~~~~~s~~~~~~~~t~--P~--------~p~~~~v~~~~~t~~sv~vsW~p~--~~g~i~~Y~V~~~~ 507 (1189)
|+..|.|.++|+|..|.+.+......+. .. ...++.+.+...+.++|.|.|.-. .-.....|.|.|..
T Consensus 784 ~~~~YvVkL~AfNn~gdG~p~y~~~~tR~~~~~~~~v~tp~~ppvgv~A~~~S~tsI~v~w~~~~~~t~~~~~yTVr~~~ 863 (1381)
T KOG4221|consen 784 PNRDYVVKLRAFNNHGDGNPIYESVKTRSATDPTSPVDTPMLPPVGVRANALSSTSIRVTWADNKDQTTDNRIYTVRWSL 863 (1381)
T ss_pred cCceEEEEEEEeccCCCCcceeeeeeeccCCCcCCcCCCCCCCcccccccccccceEEEEEecCCCccccceEEEEEEee
Confidence 9999999999999888887765333221 11 112234445556899999999942 22356789999973
Q ss_pred C--CCCeEEEEecCCcceEEEeCCCCCCeEEEEEEEEe-C---CcCCCcEEEee-ccCC-CCCcceEEEEEe-CcEEEEE
Q psy4951 508 P--DIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVA-D---GVLSTPIQRHD-RLYP-EPITRINATEIT-DTSVSLT 578 (1189)
Q Consensus 508 ~--~~~~~~~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~-~---~~~S~~~~~~~-~t~p-~~P~~l~v~~v~-~~sv~l~ 578 (1189)
. .+.........+..++.+.+|.|.+.|+|-|.+.. + +.+|..+...+ ...| .||.++.+.... ++++.+.
T Consensus 864 ~gi~~~~~~~~~~~t~ls~~v~glkpnt~yEfav~~~~~~~r~stwsmsv~~~tle~~P~sPP~d~tv~p~e~P~~v~v~ 943 (1381)
T KOG4221|consen 864 TGIRNGTLYRYDNSTDLSYLVGGLKPNTPYEFAVMVVKRNRRESTWSMSVENRTLELVPSSPPRDLTVQPDEKPTTVIVH 943 (1381)
T ss_pred cccccceeEEEecccccceeccCcCcCChhhhhhhhhhccCcCCcccceeeeeecccCCCCCChhceecccCCCCccccc
Confidence 3 33333345567788999999999999999999865 2 33333333333 2234 789999987654 7999999
Q ss_pred eeCCC---CCCceEEEEEEcCCCeE------EEeeccccEEEEcCCCCCCEEEEEEEEEeCCC
Q psy4951 579 WDSPR---GEYNAFEVQYLNTEGFL------IQNLTLHTSIVIGDLKPHRNYTFTVIVRSGTE 632 (1189)
Q Consensus 579 W~~p~---g~i~~Y~V~~~~~~~~~------~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~g 632 (1189)
|.+|. |.|..|.|+|....... .........+.+.+|.+++.|.|+|+|.+..|
T Consensus 944 WqPp~e~nG~I~~Yii~Ys~~~n~~~~dWt~~t~~g~~L~~~v~~l~p~t~yffkiQAr~~kG 1006 (1381)
T KOG4221|consen 944 WQPPTEPNGEITEYIIYYSTDGNTPEHDWTIETTAGAELSHQVPNLDPDTGYFFKIQARNEKG 1006 (1381)
T ss_pred cCCCcCCCCceeeEEEEEecCCCCchhhceeeecccchhhhccCCCCCCCceEEEEEeeccCC
Confidence 99984 89999999998765521 11223566778999999999999999999887
No 3
>KOG4228|consensus
Probab=100.00 E-value=5.6e-38 Score=370.45 Aligned_cols=595 Identities=18% Similarity=0.208 Sum_probs=339.0
Q ss_pred EcCCCCccceEEEeeccCCCEEEEEEEcCCCCCeeEEEEEEEcCCCCeEEEEecCCcceEEEeCCCCCCeEEEEEEEEeC
Q psy4951 465 RTMPLIESEVLVVNNQQSTDSVTLRYTPQNSNHFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVAD 544 (1189)
Q Consensus 465 ~t~P~~p~~~~v~~~~~t~~sv~vsW~p~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~ 544 (1189)
...|..+....+... ...++...|.+... ....|.+.++....... ..............+.+...|++ .++|.
T Consensus 22 ~~~p~~~~~~~vt~~--~~~~~~~~~~~~~t-~~~~y~v~~~~~~s~~~-~~~~~~~~~~s~~~~~~~~~~~~--~evnt 95 (1087)
T KOG4228|consen 22 NGGPPGPSTPNVTGS--TATSWVQAELLGST-WPNYYQVIFKALSSGYG-YIDVDLTTRLSYPCLSPPSFLEL--VEVNT 95 (1087)
T ss_pred cCCCCCCCCcccccc--cccceeehhhccCC-ChhhhheeeeEeccCcc-eeeccceeecccCCCCCcchhhh--hhccc
Confidence 334555555566544 77888888885443 45567776654433222 22222334456667777777777 55555
Q ss_pred CcCCCcEEEee-ccC----CCCCcceEEEEEeCcEEEEEeeCCCCCCceEEEEEEcCCCeEEEeeccccEEEEcCCCCCC
Q psy4951 545 GVLSTPIQRHD-RLY----PEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEGFLIQNLTLHTSIVIGDLKPHR 619 (1189)
Q Consensus 545 ~~~S~~~~~~~-~t~----p~~P~~l~v~~v~~~sv~l~W~~p~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~l~~L~p~t 619 (1189)
++.+....... ++. ...+....+.........+.|..+...+.
T Consensus 96 ~~~a~~~~~~~~rt~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-------------------------------- 143 (1087)
T KOG4228|consen 96 IGRAPFQCPVAPRTGEQATLSLQRDVQALMLSAATAHVNWRRFSATVG-------------------------------- 143 (1087)
T ss_pred ccccccccccCCccccccccccccchhhhhhhhhhhccCccccccccc--------------------------------
Confidence 44433221111 111 11122222222233334444444332211
Q ss_pred EEEEEEEEEeCCCcceeeecc-ceeEEEEeccCCCCCcccccccccceeecccccceeeeecccceEEEEecCCCCCCCC
Q psy4951 620 NYTFTVIVRSGTESSVLRRSL-PVSAIFQTHESLPGKMDRTIVDTWHFVRFFQAEKFHPIDVQPGDITFEWSLPGSEQNG 698 (1189)
Q Consensus 620 ~Y~~~V~A~~~~g~~~~~~s~-~~s~~~~T~~~~P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~tsv~l~W~~P~~~~ng 698 (1189)
+.+.++.| .+. +.....+|.+..|..+. ...+-+.++++|.+|.. .
T Consensus 144 -----~~~~~~~~-----~~~~~t~i~i~~~~~~p~~~~--------------------~~~~~~~it~~w~~~~~---~ 190 (1087)
T KOG4228|consen 144 -----PLAIASPG-----LGPPSTYIQITTNANSPIQPG--------------------EEEEYTTITGSWSPPHA---V 190 (1087)
T ss_pred -----ccccCCcc-----cCCCCceEEEeccCCCCCCCC--------------------cceEEEEEEecCCCCCc---c
Confidence 45555443 222 22233455555554431 55667889999988763 6
Q ss_pred cceEEEEEEeccCcccceeeeeeeeecCcceeeEEeC-CCCCCcccceEEEEEEEEEecCCCCccccceeeeeccCcC--
Q psy4951 699 VIRKFTISYAQEAACNHNQRLHAKFQLPRVNSKKLKG-WPGTLRTDWRSYIYKLQAELGLHMEPETIWKQKMPIPRRC-- 775 (1189)
Q Consensus 699 ~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~pg~~~~~~t~Y~~~V~A~~~~G~g~~s~~~~~~t~~~~~-- 775 (1189)
.+..|++.+...+....... +. ....+....+ .|- ..|.|+..+....+.+.....+...++...-
T Consensus 191 ~~~~ykl~~~~~d~~~~~~v----~~-~~~~~~~t~~~~~~------~~~~~~~ae~~~~~~~~~~a~i~~r~~~s~~~~ 259 (1087)
T KOG4228|consen 191 SLDTYKLLHLDPDTGYEISV----TL-TPPGSGGTGDLGPP------SISRFKCAEPDRGPLGSSTAEIEARQLQSVSKK 259 (1087)
T ss_pred cchhhhhhhcCCcccceeee----ec-cCCCCCcccCCCCc------ccccccccCccccccCCCCcceEEEehhhhhcc
Confidence 79999887655533211111 11 2233333334 666 7888888888776666666666666652210
Q ss_pred ---------CCCCCCcccccccccccccccccccccCCCCCCCCCccceeeeeeeEEEEEeccccCcCCCccEEEEEEEE
Q psy4951 776 ---------GLNPNSDIIKVNENNIKRINSFNIYFLAPPRPSSQVVPTEVCRTSTTIQIRFRKNYFSEKNGAIIYYTVIV 846 (1189)
Q Consensus 776 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~p~~~~~~~~~~~~~~si~v~~~~~~~~~~~g~I~~y~v~v 846 (1189)
+..++.-...++.. + ......+.. +........ +.....+.+.. +.+|++|..|.+.+
T Consensus 260 ~~~~~~~~~~~~~~t~~~~~~~~------S-~~~v~~~~~-~~i~~~~p~--~~~~~~it~~~---~~~g~~~sv~~~~~ 326 (1087)
T KOG4228|consen 260 NFETKHVFKNLVPGTWESFSNYA------S-TTNVSGRSF-PLIVNLNPE--TEYSFVITVRL---SSGGAPISVYQVTA 326 (1087)
T ss_pred ccccceeecccCCceeeeeeccc------c-cCcccCCCc-ceeccCCCc--ccccceeeccc---cCCCeeEEEEeeeh
Confidence 00000000000000 0 001122222 222222222 22223343332 46888999999987
Q ss_pred EecCCCCCCCCCCCCcccccccCCCCCccccCCccccC----CCceeEEEecCCcccccCceecCCCCCCCEEEEEEEEE
Q psy4951 847 AEDDSKNSSGLEMPSWRDVQAYSVWPPYQVLEPFQFFK----NMSVEDFTIGEESCEGKTGYCNGPLKSGSTYKVKIRAF 922 (1189)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~----~~~~~~f~vg~~~c~~~~~~~n~~L~p~~~Y~~~v~a~ 922 (1189)
.+.... -.|.....+.....-...+-|.... ......|++|++ ..+.++.+-+|.+-+.|....++.
T Consensus 327 ~~~~~~-------~~~~v~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ftv~~~--~~~~~~~~~~~~~~~s~~~~~~~~ 397 (1087)
T KOG4228|consen 327 EDELNM-------DCGSVPVTLPNAPSRVSVKYFFAELVPSNLSRAMPFTVGDN--VPEEGLLNEPLQPIKSYSIYFQAL 397 (1087)
T ss_pred hhhccc-------ccCceeeecCcccccchhhhheeeeccccccCCCCcccCCC--CccchhhcCccchhhccchHHHhh
Confidence 654431 1111111111100000001122211 123468999997 577788888888888876333333
Q ss_pred eCCCCC----------------------cc--cccccceecc----cc----cccccC-CCCCCCCEEEeehHHHHHHHH
Q psy4951 923 TTPDKF----------------------TD--TAYSFPISTG----WY----NFALLG-QDQDNTPLVVGITIPFILVLI 969 (1189)
Q Consensus 923 t~~~~~----------------------~~--~~~s~p~~~~----~~----~~~~~~-~~~~~~~ii~~~~~~~~~~~~ 969 (1189)
....+. .. ..+..++... +. ...... .......+.++.+.++++++.
T Consensus 398 s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (1087)
T KOG4228|consen 398 SRELEEKPYIARHADVSTVNDSTPEPGFRNLELQSILEYDAFFLAVLISLLYAASPYSDDEAEKLIATVSFSLATVIFIG 477 (1087)
T ss_pred cchhccCceEEEEecccccCCCCCCccccccccccccccchhhhhhhhhhhhhcCccccccccchhhhhhhHHHHHHHHH
Confidence 222111 00 0000111100 00 000000 111222233333444444444
Q ss_pred HHHHhhheeecCccccc-----cccccc--cCCccccccccCCCCccchhhHHHHHHHHHhCCCcchHHHHHHccccCCC
Q psy4951 970 LCMTVFILRSRRKNVRK-----TTESRN--ADNMSLQDSIVETSRPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGRE 1042 (1189)
Q Consensus 970 ~~~~~~~~~~~r~~~~~-----~~~~~~--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~ 1042 (1189)
|++.++.+++.-..+.+ ...... ..+..+..... ...||++++|.++++.+++++..+|.+||+.|... .
T Consensus 478 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pI~v~dl~~~i~~~~~~~~~~F~~Eyesl~~~--~ 554 (1087)
T KOG4228|consen 478 IVLAFLLFKTFLSSSKLHCLSNRASERSERKKKPVLLRRLN-TPGPIPVADLLEHIERRKADDGYGFKQEYESLPEG--Q 554 (1087)
T ss_pred HHHHHHHHHhhccccchhhcCccchhhhhcccchhhhhccC-CCCCccHHHHHHHHHHhhcccccchHHHHhhcccc--C
Confidence 44444444433111111 000000 01111111112 44489999999999999999999999999999975 7
Q ss_pred cceecccCCCCCCCCCCCCCCCCCCCeEEecCCCCCCCCcccccccCCCCCCCC--------------------------
Q psy4951 1043 QSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPR-------------------------- 1096 (1189)
Q Consensus 1043 ~~~~~~~~~~n~~knR~~~v~~~d~~RV~L~~~~~~~~~dYInAs~v~~~~~~~-------------------------- 1096 (1189)
.++.++...+|+.||||.||++|||+||+|...++++++|||||||||||..++
T Consensus 555 ~~~~~s~~~en~~KNRY~nilayD~sRV~L~~i~Gd~~sDYINAnyIdGy~e~n~yIaaQgP~~eTv~DFWRMVWEq~S~ 634 (1087)
T KOG4228|consen 555 FTWEHSNKKENKQKNRYENILAYDHSRVILPPIEGDPNSDYINANYIDGYKEPNAYIAAQGPRPETVGDFWRMVWEQKSA 634 (1087)
T ss_pred CccccCccccccccccCCcchhhhcceeeecccCCCccccceeeeeeecccccccceeccCCcccchHHHHHHheeccCC
Confidence 889999999999999999999999999999999999999999999999999777
Q ss_pred --------------------------------------------------------------------------------
Q psy4951 1097 -------------------------------------------------------------------------------- 1096 (1189)
Q Consensus 1097 -------------------------------------------------------------------------------- 1096 (1189)
T Consensus 635 ~IVMvTnl~E~~r~kC~qYWP~~t~~yGdi~V~~~~~~~~a~y~iRtf~l~~~g~~~~R~v~qfhFt~Wpd~gvPe~~t~ 714 (1087)
T KOG4228|consen 635 GIVMVTNLEEFSRVKCAQYWPEGTETYGDIKVTLVQTKPLAEYGIRTFALKKQGENPKREVRQFHFTAWPDHGVPETPTG 714 (1087)
T ss_pred cEEEEecccccccccccccCCCCccccccccccceeeeeeccceEEeeeccccCCCCCceeeeeeeccCCCCCCcccchH
Confidence
Q ss_pred ----------------------------CcceEEeHHHHHHHhcCCCCCCHHHHHHHHHhCccccccChhhhhhHHHHHH
Q psy4951 1097 ----------------------------RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLL 1148 (1189)
Q Consensus 1097 ----------------------------rtg~fi~~~~~~~~~~~~~~~dv~~~v~~~r~~R~~~v~~~~Qy~f~y~~~~ 1148 (1189)
|||+||++|.++++++.++.+||++.|+.||.||..||||++||.|||++|+
T Consensus 715 lL~f~rrvk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~mVQt~eQYiFi~~All 794 (1087)
T KOG4228|consen 715 LLKFRRRVKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNMVQTEEQYIFIHEALL 794 (1087)
T ss_pred HHHHHHHhccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccccccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCcCCccccccc
Q psy4951 1149 AVLEGNENQLPLREIHHN 1166 (1189)
Q Consensus 1149 ~~~~~~~~~~~~~~~~~~ 1166 (1189)
++..+++++++++.+...
T Consensus 795 E~~~~G~T~i~~~~~~~~ 812 (1087)
T KOG4228|consen 795 EACLCGDTEVPASTLAPY 812 (1087)
T ss_pred HHHhcCCccccHHHHHHH
Confidence 999999999999987765
No 4
>KOG4228|consensus
Probab=99.96 E-value=2.3e-30 Score=306.25 Aligned_cols=207 Identities=29% Similarity=0.395 Sum_probs=181.1
Q ss_pred cccCCCCCCCCEEEeehHHHHH------------------HHHHHHHhhheeecCccccccccccccCCccccccccCCC
Q psy4951 945 ALLGQDQDNTPLVVGITIPFIL------------------VLILCMTVFILRSRRKNVRKTTESRNADNMSLQDSIVETS 1006 (1189)
Q Consensus 945 ~~~~~~~~~~~ii~~~~~~~~~------------------~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 1006 (1189)
.....+..+++++++|.+|+.. .+.+...+..+|++|..++++.+++.+.+.+++|..++|.
T Consensus 722 vk~~~p~~aGPiVVHCSAGvGRTG~fi~iDaml~~~~~e~~vdiy~~v~~lR~QR~~mVQt~eQYiFi~~AllE~~~~G~ 801 (1087)
T KOG4228|consen 722 VKTFNPPDAGPIVVHCSAGVGRTGCFIVIDAMLDRLECEGKVDIYGHVKTLRRQRNNMVQTEEQYIFIHEALLEACLCGD 801 (1087)
T ss_pred hccCCCcCCCCEEEECCCCCCCcceEEEeHHHHHHHHhhCccceechhHHHHhccccccccHHHHHHHHHHHHHHHhcCC
Confidence 3334455778999999887522 2223335567899999999999999999999999999999
Q ss_pred CccchhhHHHHHHHHHh----CCCcchHHHHHHccccCCC-cceecccCCCCCCCCCCCCCCCCCCCeEEecCCCCCCCC
Q psy4951 1007 RPIRLENFAEHYRIMSA----DSDFRFSEEFEELKHVGRE-QSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGS 1081 (1189)
Q Consensus 1007 ~~i~~~~~~~~~~~~~~----~~~~~~~~E~~~l~~~~~~-~~~~~~~~~~n~~knR~~~v~~~d~~RV~L~~~~~~~~~ 1081 (1189)
+.+++.+|..+++.+++ .++.++.+||+.|...... ....++.+++|+.|||+.+|+|||++||.|.+..++ ++
T Consensus 802 T~i~~~~~~~~~~~l~~~~p~~~~t~le~EF~~L~~~~~~~~~~~~~~l~~N~~KNR~~~i~P~d~~rv~L~~~~G~-~s 880 (1087)
T KOG4228|consen 802 TEVPASTLAPYSQKLKRIDPPENKTGLEEEFKTLNSCKPRTRMMICGNLPENKSKNRQVNILPYDRNRVILIPTHGE-SS 880 (1087)
T ss_pred ccccHHHHHHHHHHhccCCCCCCCcchHHHHHHHhhccccchhhhccccchhcccccccccCCchhcccceeccCCC-cc
Confidence 99999999999999998 2345899999999876433 333348999999999999999999999999988886 88
Q ss_pred cccccccCCCCCCCC-----------------------------------------------------------------
Q psy4951 1082 DYINANYVPGHNSPR----------------------------------------------------------------- 1096 (1189)
Q Consensus 1082 dYInAs~v~~~~~~~----------------------------------------------------------------- 1096 (1189)
|||||+|||||..+.
T Consensus 881 dYINAs~idgy~~~~~fivtq~PL~~T~~DFWrmi~d~~~tsiVmL~~l~~~~~C~qyw~~~g~~~yg~i~Ve~~~~~~~ 960 (1087)
T KOG4228|consen 881 DYINASFIDGYRQPKAFIVTQGPLAETVEDFWRMIWDQNVTSIVMLTELKHPEKCPQYWPPEGSQRYGPIEVEDMNEHIN 960 (1087)
T ss_pred cccchhhhcccCCcceEEEecCCcccchHHHHHHhhccceeEEEEecccCcccccccccCCcCceecCcEEEEecccccc
Confidence 999999999998777
Q ss_pred ----------------------------------------------------------------------CcceEEeHHH
Q psy4951 1097 ----------------------------------------------------------------------RSGTLIALDR 1106 (1189)
Q Consensus 1097 ----------------------------------------------------------------------rtg~fi~~~~ 1106 (1189)
|+|+|||+-+
T Consensus 961 ~~~t~r~f~i~n~~~~~~r~v~qfq~~~WP~~~~~p~~~~~~~~i~~~~~~~q~~~~~~P~~Vhc~nG~~rsg~f~ai~~ 1040 (1087)
T KOG4228|consen 961 PQYTAREFGVTNEREKQSRTVRQFQFTGWPEYGKPPQSKGPISKIPSVASKWQQLGADGPIIVHCLNGVGRTGTFCAISI 1040 (1087)
T ss_pred hhhhhhhheeeeccccCceEEEEEEecCCcccCcCCCCcchhhhHHHHHHHHHhhcCCCCEEEEEcCCCcceeehHHHHH
Confidence 9999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHhCccccccChhhhhhHHHHHHHHHh
Q psy4951 1107 ILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLE 1152 (1189)
Q Consensus 1107 ~~~~~~~~~~~dv~~~v~~~r~~R~~~v~~~~Qy~f~y~~~~~~~~ 1152 (1189)
++++++.++.+|||++|+.||.||++||++.+||.|||+++++|+.
T Consensus 1041 l~e~~~~e~~vDVfq~vk~Lr~~rp~mv~t~~QY~fcYdv~~~y~~ 1086 (1087)
T KOG4228|consen 1041 LLERMRKEGVVDVFQTVKTLRFQRPGMVDTSDQYQFCYDVALEYLG 1086 (1087)
T ss_pred HHHHHhhcCceeeehhhhhhhhcCccccCcHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999975
No 5
>KOG0791|consensus
Probab=99.96 E-value=1.7e-29 Score=264.84 Aligned_cols=152 Identities=61% Similarity=1.016 Sum_probs=146.5
Q ss_pred CCCccchhhHHHHHHHHHhCCCcchHHHHHHccccCCCcceecccCCCCCCCCCCCCCCCCCCCeEEecCCCCCCCCccc
Q psy4951 1005 TSRPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYI 1084 (1189)
Q Consensus 1005 ~~~~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~~~~~~~~~n~~knR~~~v~~~d~~RV~L~~~~~~~~~dYI 1084 (1189)
-..+|.+++|+.|+.++.++++++|.+||++|+..+..+++..|.+++|+.||||.|++|||++||+|++.++++++|||
T Consensus 74 ~s~~i~len~e~~~~~~~~dsn~~f~eey~~lk~~g~~~~~~aA~l~~n~~knr~~nilpYd~Srvkl~~~~e~~~~DYi 153 (374)
T KOG0791|consen 74 LTNPVSLENFELHVKKMSADSNYKFSEEYNELKLVGLDQSKLAALLPLNRPKNRYTNILPYDNSRVKLSPVNEEEGSDYI 153 (374)
T ss_pred cCCceeeccchhhhhhcccccchhhHHHHhhhhhhcccchhhhhhcCCCCCcCCcCCCCCcccccceeccccccchhhhh
Confidence 34599999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred ccccCCCCCCCC--------------------------------------------------------------------
Q psy4951 1085 NANYVPGHNSPR-------------------------------------------------------------------- 1096 (1189)
Q Consensus 1085 nAs~v~~~~~~~-------------------------------------------------------------------- 1096 (1189)
|||||+|+..++
T Consensus 154 nA~~~Pg~~s~~~fIAtQGPlp~t~~~fW~mvwq~~~~~IVmlt~~~e~~R~kc~~ywP~~~~~~~~gdi~V~~v~e~~~ 233 (374)
T KOG0791|consen 154 NASYIPGYNSPREFIATQGPLPETRDDFWKMVWQQKSHIIVMLTKCNEKGRVKCDEYWPDEEVPVAYGDITVTMVSEESL 233 (374)
T ss_pred hhhhcCCCCCcceEEEeeCCCCCChhHHHHHHHHhhcceEEEEeecccccchhhhhhcccccccceeccEEEEEechhhc
Confidence 999999999888
Q ss_pred ------------------------------------------------------------------CcceEEeHHHHHHH
Q psy4951 1097 ------------------------------------------------------------------RSGTLIALDRILQS 1110 (1189)
Q Consensus 1097 ------------------------------------------------------------------rtg~fi~~~~~~~~ 1110 (1189)
|||||||+|.+|+|
T Consensus 234 ~~w~ir~~~l~~~~~sr~ir~f~y~~wPd~gvp~~~~sl~~f~~~~r~~~~~~~~p~iVhCSAGVgRTGTFiald~LLqq 313 (374)
T KOG0791|consen 234 DEWTIREFRLNYAGESRKIRHFHYTAWPDFGVPSSTESLLQFVRMVRQSLDTSKGPTIVHCSAGVGRTGTFIALDRLLQQ 313 (374)
T ss_pred CCceEEEEeeecccccceeEEEEEeeccccCCCCCchhHHHHHHHHHhhcccCCCceeEEeecccccccchHhHHHHHHH
Confidence 99999999999999
Q ss_pred hcCCCCCCHHHHHHHHHhCccccccChhhhhhHHHHHHHHHhcCCC
Q psy4951 1111 INHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156 (1189)
Q Consensus 1111 ~~~~~~~dv~~~v~~~r~~R~~~v~~~~Qy~f~y~~~~~~~~~~~~ 1156 (1189)
+..+..+|++++|.+||.+|+.||||++||.|||+|+++.+++++.
T Consensus 314 ~~~~~~vdi~~iv~~lR~~R~~mVqte~Qyvfl~~c~~~~l~~~~~ 359 (374)
T KOG0791|consen 314 IDSEETVDIFGVVLELRSARMLMVQTEDQYVFLHQCVLESLQGKKP 359 (374)
T ss_pred hcccccccHHHHHHHhhhccccccchHHHHHHHHHHHHHHHhCCCc
Confidence 9999999999999999999999999999999999999999998875
No 6
>KOG3513|consensus
Probab=99.96 E-value=2.1e-24 Score=257.66 Aligned_cols=395 Identities=15% Similarity=0.155 Sum_probs=276.9
Q ss_pred cCCCCCCeEEEEEEEEEcCccCCCceeEEeecCCCCccce-EEeecCcEEEEEeeCC---CcceeEEEEEEEeeccCCCC
Q psy4951 337 TDMVPGEKCMIQVNSVSYSVESAHPLQINHTISPNPATYV-AALVDASNVTLEFPRP---EGRIEYYLVTWRGIGPEATS 412 (1189)
Q Consensus 337 ~~L~p~t~Y~~~V~A~~~~g~s~~~~~~~~~t~p~pp~~l-~~~~~~~sv~lsW~~p---~g~i~~Y~V~~~~~~~~~~~ 412 (1189)
..|+..-.|.+++.+.-+..... .......+|.||.++ ...++.++++|+|++. +++|..|.|+.+ ..-..
T Consensus 584 v~l~~~G~Y~C~aqT~~Ds~s~~--A~l~V~gpPgpP~~v~~~~i~~t~~~lsW~~g~dn~SpI~~Y~iq~r---t~~~~ 658 (1051)
T KOG3513|consen 584 VSLEDSGKYTCVAQTALDSASAR--ADLLVRGPPGPPPDVHVDDISDTTARLSWSPGSDNNSPIEKYTIQFR---TPFPG 658 (1051)
T ss_pred eccccCceEEEEEEEeecchhcc--cceEEecCCCCCCceeEeeeccceEEEEeecCCCCCCCceEEeEEec---CCCCC
Confidence 56788889999998843333322 345677789999988 6789999999999987 578999999998 55666
Q ss_pred cceEeeeecCCCCCCCCceEEEecCCCCCCeEEEEEEEEeCCccCcceE--EEEEcCCCCc--cceEEEeeccCCCEEEE
Q psy4951 413 TELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGVTS--LSARTMPLIE--SEVLVVNNQQSTDSVTL 488 (1189)
Q Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~~~s~~~~--~~~~t~P~~p--~~~~v~~~~~t~~sv~v 488 (1189)
.|.....++...+ +. .+.++.+|.|...|+|||.|.|..|.++++. ...+|.++.| .+.+|.......+.+.|
T Consensus 659 ~W~~v~~vp~~~~--~~-~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvI 735 (1051)
T KOG3513|consen 659 KWKAVTTVPGNIT--GD-ESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVI 735 (1051)
T ss_pred cceEeeECCCccc--Cc-cceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEE
Confidence 7766666666422 22 4578999999999999999999888777653 3355555443 23344444457899999
Q ss_pred EEEcCC----CCCeeEEEEEEEcCCCC--eEEEEe-cCCcceEEEeC--CCCCCeEEEEEEEEeCCcCCCcEEEee----
Q psy4951 489 RYTPQN----SNHFDFYRFTLSEPDIP--VIEKAA-NDTDRKVTFNN--LTPGKLYNFTVWTVADGVLSTPIQRHD---- 555 (1189)
Q Consensus 489 sW~p~~----~g~i~~Y~V~~~~~~~~--~~~~~~-~~~~~~~~l~~--L~p~t~Y~v~V~a~~~~~~S~~~~~~~---- 555 (1189)
+|+|-. ||+-.+|+|.|+..+.. |....+ +.++..+.+.+ ..|.+.|++.|+|+|+.|.++...+..
T Consensus 736 tW~Pl~~~~qNG~gfgY~Vswr~~g~~~~W~~~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~GeGp~s~~~v~~S~ 815 (1051)
T KOG3513|consen 736 TWEPLPEEEQNGPGFGYRVSWRPQGADKEWKEVIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQGEGPESQVTVGYSG 815 (1051)
T ss_pred EeccCCHHHccCCCceEEEEEEeCCCCcccceeEecccCCceEEEcCCCCCCcceeEEEEEEecCCCCCCCCceEEEEcC
Confidence 999643 78889999999987654 444433 33445566554 567999999999999866664433322
Q ss_pred c-cCCCCCcceEEEEEeCcEEEEEeeCCC---CCCceEEEEEEcCCCe-----EEEeeccccEEEEcCCCCCCEEEEEEE
Q psy4951 556 R-LYPEPITRINATEITDTSVSLTWDSPR---GEYNAFEVQYLNTEGF-----LIQNLTLHTSIVIGDLKPHRNYTFTVI 626 (1189)
Q Consensus 556 ~-t~p~~P~~l~v~~v~~~sv~l~W~~p~---g~i~~Y~V~~~~~~~~-----~~~~~~~~~~~~l~~L~p~t~Y~~~V~ 626 (1189)
. .+|.+|+.+.+...+.+.+.|+|++|. |.+++|+|.|+..+.. ........++..|+||++.|.|.|.|+
T Consensus 816 Ed~P~~ap~~~~~~~~s~s~~~v~W~~~~~~nG~l~gY~v~Y~~~~~~~~~~~~~~i~~~~~~~~ltgL~~~T~Y~~~vr 895 (1051)
T KOG3513|consen 816 EDEPPVAPTKLSAKPLSSSEVNLSWKPPLWDNGKLTGYEVKYWKINEKEGSLSRVQIAGNRTSWRLTGLEPNTKYRFYVR 895 (1051)
T ss_pred CCCCCCCCccceeecccCceEEEEecCcCccCCccceeEEEEEEcCCCcccccceeecCCcceEeeeCCCCCceEEEEEE
Confidence 2 345889999999999999999998874 8899999999987653 223346788999999999999999999
Q ss_pred EEeCCCcceeeeccceeEEEEeccCCCCCcccccccccceeecccccceeeeecccceEEEEecCCCCCCC-CcceEEEE
Q psy4951 627 VRSGTESSVLRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFFQAEKFHPIDVQPGDITFEWSLPGSEQN-GVIRKFTI 705 (1189)
Q Consensus 627 A~~~~g~~~~~~s~~~s~~~~T~~~~P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~tsv~l~W~~P~~~~n-g~i~~Y~i 705 (1189)
|+|..|. +........+|...+|+... +.|+.-.+.......+.|.|..-..-.| ..+.+|.|
T Consensus 896 A~nsaG~----Gp~s~~~~~tt~k~pPs~~~------------~~p~g~~~~~~~~~~~~l~w~~v~~~~nes~v~gYkV 959 (1051)
T KOG3513|consen 896 AYTSAGG----GPASSEENVTTKKAPPSQVD------------IAPPGNFIWKFSASILLLLWLLVSAFENESEVGGYKV 959 (1051)
T ss_pred EecCCCC----CCCccceeccccCCCCcccc------------cCCCcceEEeeeeeEEEEEEeeEEEEeecccCcceEE
Confidence 9999971 22222334567777776410 0111444566778889999985543222 46899999
Q ss_pred EEeccCcccceeeeeeeeecCcceeeEEeC--CCCCCcccceEEEEEEEEEecCCCCcccccee
Q psy4951 706 SYAQEAACNHNQRLHAKFQLPRVNSKKLKG--WPGTLRTDWRSYIYKLQAELGLHMEPETIWKQ 767 (1189)
Q Consensus 706 ~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~pg~~~~~~t~Y~~~V~A~~~~G~g~~s~~~~ 767 (1189)
.|+.+........ . .......+.. ..+ -.|.+.|++....|.|..+....
T Consensus 960 ~~~~~~~~~~~~~----~--t~~~~~~~~~p~~~~------~~y~i~v~~~~~ggdg~~s~~~~ 1011 (1051)
T KOG3513|consen 960 LYREDLQNDIEII----L--TMKLDAEFPEPSDLD------GKYDIKVRGYSPGGDGTISEEIS 1011 (1051)
T ss_pred EEeecccCCceeE----e--cccccccccCccccC------CcceeEeccccCCCCCCcCCccc
Confidence 9977665411111 0 1111111112 113 48999999999988886554433
No 7
>KOG0790|consensus
Probab=99.95 E-value=3.3e-28 Score=256.52 Aligned_cols=166 Identities=33% Similarity=0.447 Sum_probs=136.9
Q ss_pred CCCccchhhHHHHHHHHHhC------CCcchHHHHHHccccC--CCcceecccCCCCCCCCCCCCCCCCCCCeEEecCCC
Q psy4951 1005 TSRPIRLENFAEHYRIMSAD------SDFRFSEEFEELKHVG--REQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVD 1076 (1189)
Q Consensus 1005 ~~~~i~~~~~~~~~~~~~~~------~~~~~~~E~~~l~~~~--~~~~~~~~~~~~n~~knR~~~v~~~d~~RV~L~~~~ 1076 (1189)
..+-|.+++|+.+++.+.+. .+.||++||+.|+.+. .-.....+..++|+.||||+||+||||+||+|...+
T Consensus 216 naTrI~Aa~i~~Rve~l~k~~e~~d~~k~GfwEEFesLqq~~~~~~~sr~EG~r~eN~~KNRYkNIlPfDHtRViL~d~~ 295 (600)
T KOG0790|consen 216 NATRINAADIENRVEELNKKQESEDTAKAGFWEEFESLQQQEVKNLHSRLEGQRPENKGKNRYKNILPFDHTRVILQDRD 295 (600)
T ss_pred cccchhhhhHHHHHHHHhccccchhhhhcchhHHHHHhhhhhhHhhhhhhccccchhhccccccccCcccceeeEeecCC
Confidence 34678889999999988763 3569999999997653 224556688999999999999999999999998664
Q ss_pred C-CCCCcccccccCCCCCCCC-----------------------------------------------------------
Q psy4951 1077 D-EEGSDYINANYVPGHNSPR----------------------------------------------------------- 1096 (1189)
Q Consensus 1077 ~-~~~~dYInAs~v~~~~~~~----------------------------------------------------------- 1096 (1189)
. .+++||||||||---....
T Consensus 296 ~n~pgsdYINAnyi~~~~q~~~~~~~~kKsyIAtQGCL~nTVnDFW~MvwQENsrVIVMtTkE~ERgK~KC~~YWPee~~ 375 (600)
T KOG0790|consen 296 PNIPGSDYINANYIMIEFQRLCNNSKPKKSYIATQGCLQNTVNDFWRMVWQENSRVIVMTTKEVERGKSKCVKYWPEEGA 375 (600)
T ss_pred CCCccchhcccchhhhhhhhccCccccccceeehhhHHHHHHHHHHHHHHhccceEEEEehhhhhcccccccccCCcccc
Confidence 4 6899999999983211111
Q ss_pred --------------------------------------------------------------------------------
Q psy4951 1097 -------------------------------------------------------------------------------- 1096 (1189)
Q Consensus 1097 -------------------------------------------------------------------------------- 1096 (1189)
T Consensus 376 ~e~~G~~~v~~v~E~~t~dY~LR~l~vs~~~~g~~~R~I~~yh~~tWPDHGvP~dPg~vLnFLe~V~~rq~~l~~AgpIv 455 (600)
T KOG0790|consen 376 LEEYGVMRVRNVKESDTHDYTLRELKVSKLGNGNLEREIWHYHYLTWPDHGVPSDPGGVLNFLEEVNHRQESLMDAGPIV 455 (600)
T ss_pred hhhcCceEEEeccccccccceehheeeccccCCcchhhhhhhheeecccCCCcCCccHHHHHHHHhhhhhccccccCcEE
Confidence
Q ss_pred --------CcceEEeHHHHHHHhcCC---CCCCHHHHHHHHHhCccccccChhhhhhHHHHHHHHHhcCCCcCCcccccc
Q psy4951 1097 --------RSGTLIALDRILQSINHS---DVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNENQLPLREIHH 1165 (1189)
Q Consensus 1097 --------rtg~fi~~~~~~~~~~~~---~~~dv~~~v~~~r~~R~~~v~~~~Qy~f~y~~~~~~~~~~~~~~~~~~~~~ 1165 (1189)
||||||++|++|+++... ..+||..+|+..|.||-+||||++||.|||.||.+||+.....+.+.....
T Consensus 456 VHCSAGIGrTGTfiViD~lld~I~~~Gldc~iDi~ktIqmVRsqRSGmVQTEaQYkFiY~Avqhyietl~~r~e~eq~~~ 535 (600)
T KOG0790|consen 456 VHCSAGIGRTGTFIVIDMLLDQIREKGLDCDIDIQKTIQMVRSQRSGMVQTEAQYKFIYVAVQHYIETLQKRIEEEQKSK 535 (600)
T ss_pred EEccCCcCCcceEEEhHHHHHHHHhcCCCCcccHHHHHHHHHHHhcchhhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999754 459999999999999999999999999999999999998776666666666
Q ss_pred ccccc
Q psy4951 1166 NQGYE 1170 (1189)
Q Consensus 1166 ~~~~~ 1170 (1189)
..++|
T Consensus 536 ~~g~e 540 (600)
T KOG0790|consen 536 RKGHE 540 (600)
T ss_pred ccccc
Confidence 65655
No 8
>KOG3513|consensus
Probab=99.94 E-value=4.1e-22 Score=238.28 Aligned_cols=304 Identities=17% Similarity=0.193 Sum_probs=227.7
Q ss_pred cCCCCCCeEEEEEEEEeCCccCcceEEEEEcCCCCccceEEEeeccCCCEEEEEEEcC--CCCCeeEEEEEEEcC-CCCe
Q psy4951 436 DQLTPGVKYQFTIRTVSYNLESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQ--NSNHFDFYRFTLSEP-DIPV 512 (1189)
Q Consensus 436 ~~L~p~t~Y~v~V~a~~~~~~s~~~~~~~~t~P~~p~~~~v~~~~~t~~sv~vsW~p~--~~g~i~~Y~V~~~~~-~~~~ 512 (1189)
..|+..-.|.+++++.-+.. +..+.+..+.+|.+|..+.+... +.+++.|+|.|. .+++|..|.|+.+.. .+.|
T Consensus 584 v~l~~~G~Y~C~aqT~~Ds~-s~~A~l~V~gpPgpP~~v~~~~i--~~t~~~lsW~~g~dn~SpI~~Y~iq~rt~~~~~W 660 (1051)
T KOG3513|consen 584 VSLEDSGKYTCVAQTALDSA-SARADLLVRGPPGPPPDVHVDDI--SDTTARLSWSPGSDNNSPIEKYTIQFRTPFPGKW 660 (1051)
T ss_pred eccccCceEEEEEEEeecch-hcccceEEecCCCCCCceeEeee--ccceEEEEeecCCCCCCCceEEeEEecCCCCCcc
Confidence 35788889999999865544 33445667888888887887655 999999999953 357899999999876 3344
Q ss_pred EEEE-ecCCcc---eEEEeCCCCCCeEEEEEEEEeCCcCCCcEEE--eeccC---C-CCCcceEEEEEeCcEEEEEeeCC
Q psy4951 513 IEKA-ANDTDR---KVTFNNLTPGKLYNFTVWTVADGVLSTPIQR--HDRLY---P-EPITRINATEITDTSVSLTWDSP 582 (1189)
Q Consensus 513 ~~~~-~~~~~~---~~~l~~L~p~t~Y~v~V~a~~~~~~S~~~~~--~~~t~---p-~~P~~l~v~~v~~~sv~l~W~~p 582 (1189)
+... ++...+ +.++.+|.|...|+|||.|+|.-|.++|..- ..+|. | ..|.+|....-..+.+.|+|++.
T Consensus 661 ~~v~~vp~~~~~~~sa~vv~L~Pwv~YeFRV~AvN~iG~gePS~pS~~~rT~ea~P~~~P~nv~g~g~~~~eLvItW~Pl 740 (1051)
T KOG3513|consen 661 KAVTTVPGNITGDESATVVNLSPWVEYEFRVVAVNSIGIGEPSPPSEKVRTPEAAPSVNPSNVKGGGGSPTELVITWEPL 740 (1051)
T ss_pred eEeeECCCcccCccceeEEccCCCcceEEEEEEEcccccCCCCCCccceecCCCCCccCCccccccCCCCceEEEEeccC
Confidence 4432 333333 5778999999999999999998666555432 23444 4 46889988888899999999998
Q ss_pred C-----CCCceEEEEEEcCCCe-EEEe--e--ccccEEEEcC--CCCCCEEEEEEEEEeCCCcceeeeccceeEEEEecc
Q psy4951 583 R-----GEYNAFEVQYLNTEGF-LIQN--L--TLHTSIVIGD--LKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHE 650 (1189)
Q Consensus 583 ~-----g~i~~Y~V~~~~~~~~-~~~~--~--~~~~~~~l~~--L~p~t~Y~~~V~A~~~~g~~~~~~s~~~s~~~~T~~ 650 (1189)
+ |+-.+|+|.|+..+.. .... . .....+.+.+ ..|.+.|.+.|+|+|+.| .++.+..+.+.+.+
T Consensus 741 ~~~~qNG~gfgY~Vswr~~g~~~~W~~~~v~~~d~~~~V~~~~st~~~tpyevKVqa~N~~G----eGp~s~~~v~~S~E 816 (1051)
T KOG3513|consen 741 PEEEQNGPGFGYRVSWRPQGADKEWKEVIVSNQDQPRYVVSNESTEPFTPYEVKVQAINDQG----EGPESQVTVGYSGE 816 (1051)
T ss_pred CHHHccCCCceEEEEEEeCCCCcccceeEecccCCceEEEcCCCCCCcceeEEEEEEecCCC----CCCCCceEEEEcCC
Confidence 4 7788999999998764 2221 1 2235555544 567999999999999998 34555556666776
Q ss_pred CCC-CCcccccccccceeecccccceeeeecccceEEEEecCCCCCCCCcceEEEEEEeccCcccceeeeeeeeecCcce
Q psy4951 651 SLP-GKMDRTIVDTWHFVRFFQAEKFHPIDVQPGDITFEWSLPGSEQNGVIRKFTISYAQEAACNHNQRLHAKFQLPRVN 729 (1189)
Q Consensus 651 ~~P-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~tsv~l~W~~P~~~~ng~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~~~ 729 (1189)
+.| .+|+ .+.+...+.+.+.|+|++|.. .||.+++|+|.|...+..... .....+. ++.+
T Consensus 817 d~P~~ap~----------------~~~~~~~s~s~~~v~W~~~~~-~nG~l~gY~v~Y~~~~~~~~~-~~~~~i~-~~~~ 877 (1051)
T KOG3513|consen 817 DEPPVAPT----------------KLSAKPLSSSEVNLSWKPPLW-DNGKLTGYEVKYWKINEKEGS-LSRVQIA-GNRT 877 (1051)
T ss_pred CCCCCCCc----------------cceeecccCceEEEEecCcCc-cCCccceeEEEEEEcCCCccc-ccceeec-CCcc
Confidence 555 4444 778889999999999999875 489999999999655443110 1122366 8999
Q ss_pred eeEEeC-CCCCCcccceEEEEEEEEEecCCCCccccceeeeec
Q psy4951 730 SKKLKG-WPGTLRTDWRSYIYKLQAELGLHMEPETIWKQKMPI 771 (1189)
Q Consensus 730 ~~~i~~-~pg~~~~~~t~Y~~~V~A~~~~G~g~~s~~~~~~t~ 771 (1189)
+.+|+| +|. |.|.|.|+|.|++|.||.|.....++.
T Consensus 878 ~~~ltgL~~~------T~Y~~~vrA~nsaG~Gp~s~~~~~tt~ 914 (1051)
T KOG3513|consen 878 SWRLTGLEPN------TKYRFYVRAYTSAGGGPASSEENVTTK 914 (1051)
T ss_pred eEeeeCCCCC------ceEEEEEEEecCCCCCCCccceecccc
Confidence 999999 999 999999999999999998877766554
No 9
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=99.94 E-value=1e-27 Score=261.84 Aligned_cols=141 Identities=15% Similarity=0.190 Sum_probs=127.8
Q ss_pred CccchhhHHHHHHHHHhCCCcchHHHHHHccccCCCcceecccCCCCCCCCC--CCCCCCCCCCeEEecCCCCCCCCccc
Q psy4951 1007 RPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNR--FTNILPYDHSRFKLQPVDDEEGSDYI 1084 (1189)
Q Consensus 1007 ~~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~~~~~~~~~n~~knR--~~~v~~~d~~RV~L~~~~~~~~~dYI 1084 (1189)
.++++++|.+++++.... .++.+||++|......+++..+..++|+.||| |.|++||||+||+|+. .+|||
T Consensus 7 ~~~~~~~f~~~~~~~~~~--~~i~~E~~~i~~~~~~~~~~~~~~~~n~~knr~r~~~i~~~D~sRV~L~~-----~~~YI 79 (298)
T PHA02740 7 VDINGMDFINFINKPDLL--SCIIKEYRAIVPEHEDEANKACAQAENKAKDENLALHITRLLHRRIKLFN-----DEKVL 79 (298)
T ss_pred cccCHHHHHHHHhCCCHH--HHHHHHHHHHhccCccchhhhhhchhhhcccccccCCcCCccCceEEecC-----CCCcE
Confidence 467889999988776443 38999999998877778999999999999996 6899999999999972 45899
Q ss_pred ccccCCCCCCCC--------------------------------------------------------------------
Q psy4951 1085 NANYVPGHNSPR-------------------------------------------------------------------- 1096 (1189)
Q Consensus 1085 nAs~v~~~~~~~-------------------------------------------------------------------- 1096 (1189)
||||||||..++
T Consensus 80 NAnyVdG~~~~~~fIaTQ~Pl~~T~~dFW~MVwe~~~~iIVMLt~~~e~kc~~~YWP~~~~~~~~~g~f~V~~~~~~~~~ 159 (298)
T PHA02740 80 DARFVDGYDFEQKFICIINLCEDACDKFLQALSDNKVQIIVLISRHADKKCFNQFWSLKEGCVITSDKFQIETLEIIIKP 159 (298)
T ss_pred EEEEecCCCCCCcEEEecCCchhhHHHHHHHHHhcCCCEEEEccccccccccccCCCCCCCCeEEECCEEEEEEEEEecC
Confidence 999999999877
Q ss_pred --------------------------------------------------------------------------CcceEE
Q psy4951 1097 --------------------------------------------------------------------------RSGTLI 1102 (1189)
Q Consensus 1097 --------------------------------------------------------------------------rtg~fi 1102 (1189)
|||+||
T Consensus 160 ~~~~~~l~l~~~~~~~r~V~Hfqyt~WPd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~PIVVHCSaGvGRTGtFc 239 (298)
T PHA02740 160 HFNLTLLSLTDKFGQAQKISHFQYTAWPADGFSHDPDAFIDFFCNIDDLCADLEKHKADGKIAPIIIDCIDGISSSAVFC 239 (298)
T ss_pred CEEEEEEEEEcCCCCcEEEEEEeecCCCCCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCCEEEECCCCCchhHHHH
Confidence 999999
Q ss_pred eHHHHHHHhcCCCCCCHHHHHHHHHhCccccccChhhhhhHHHHHHHHHhcC
Q psy4951 1103 ALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGN 1154 (1189)
Q Consensus 1103 ~~~~~~~~~~~~~~~dv~~~v~~~r~~R~~~v~~~~Qy~f~y~~~~~~~~~~ 1154 (1189)
|+|+++++++.++.+||+++|++||+||++|||+++||.|||++|++|+...
T Consensus 240 aiDi~l~~~~~~~~vdi~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~yl~~~ 291 (298)
T PHA02740 240 VFDICATEFDKTGMLSIANALKKVRQKKYGCMNCLDDYVFCYHLIAAYLKEK 291 (298)
T ss_pred HHHHHHHHHHhcCcccHHHHHHHHHhhCccccCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999998864
No 10
>PHA02742 protein tyrosine phosphatase; Provisional
Probab=99.94 E-value=1.8e-27 Score=262.73 Aligned_cols=146 Identities=26% Similarity=0.328 Sum_probs=128.1
Q ss_pred CCccc-hhhHHHHHHHHHhCCCcchHHHHHHccccCCCcceecccCCCCCCCCCCCCCCCCCCCeEEecCCCCCCCCccc
Q psy4951 1006 SRPIR-LENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYI 1084 (1189)
Q Consensus 1006 ~~~i~-~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~~~~~~~~~n~~knR~~~v~~~d~~RV~L~~~~~~~~~dYI 1084 (1189)
.+.+. +.+|.+++++... ...+.+||+.|.......+|..+..++|+.||||.||+||||+||+|+.. +..+|||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~--~~~i~~E~~~i~~~~~~~~~~~~~~~~N~~KNRy~~i~~~D~tRV~L~~~--~~~~dYI 81 (303)
T PHA02742 6 SKKNSFAKNCEQLIEESNL--AEILKEEHEHIMQEIVAFSCNESLELKNMKKCRYPDAPCFDRNRVILKIE--DGGDDFI 81 (303)
T ss_pred ccccCcHHHHHHHHhcCCH--HHHHHHHHHHHhcCCCCCchhhccChhhhhcCCCCCCCCCCCCEEEeCCC--CCCCCcE
Confidence 34567 7777776554422 23699999999887778999999999999999999999999999999853 3468999
Q ss_pred ccccCCCCCCCC--------------------------------------------------------------------
Q psy4951 1085 NANYVPGHNSPR-------------------------------------------------------------------- 1096 (1189)
Q Consensus 1085 nAs~v~~~~~~~-------------------------------------------------------------------- 1096 (1189)
|||||+|+..++
T Consensus 82 NAsyI~g~~~~~~fIatQ~Pl~~T~~dFW~MVw~~~~~vIVmLt~~~E~g~~kc~~YWp~~~~~~~~~g~~~V~~~~~~~ 161 (303)
T PHA02742 82 NASYVDGHNAKGRFICTQAPLEETALDFWQAIFQDQVRVIVMITKIMEDGKEACYPYWMPHERGKATHGEFKIKTKKIKS 161 (303)
T ss_pred EEeeecCCCCCCeEEEECCCCcccHHHHHHHHhhcCCCeEEEcchhhhCCeeeccccCCCCCCCceEEEEEEEEEEEEEE
Confidence 999999998665
Q ss_pred --------------------------------------------------------------------------------
Q psy4951 1097 -------------------------------------------------------------------------------- 1096 (1189)
Q Consensus 1097 -------------------------------------------------------------------------------- 1096 (1189)
T Consensus 162 ~~~~~~~~l~l~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~~~~~~PIvVHCsaGvG 241 (303)
T PHA02742 162 FRNYAVTNLCLTDTNTGASLDIKHFAYEDWPHGGLPRDPNKFLDFVLAVREADLKADVDIKGENIVKEPPILVHCSAGLD 241 (303)
T ss_pred cCCEEEEEEEEEECCCCceEEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHhhhccccccccccCCCCCeEEECCCCCc
Confidence
Q ss_pred CcceEEeHHHHHHHhcCCCCCCHHHHHHHHHhCccccccChhhhhhHHHHHHHHHhcCC
Q psy4951 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNE 1155 (1189)
Q Consensus 1097 rtg~fi~~~~~~~~~~~~~~~dv~~~v~~~r~~R~~~v~~~~Qy~f~y~~~~~~~~~~~ 1155 (1189)
|||+|||+|++++++..++.+||+++|++||+||++|||+.+||.|||++|++|+....
T Consensus 242 RTGtF~aid~~i~~~~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~y~~~~~ 300 (303)
T PHA02742 242 RAGAFCAIDICISKYNERAIIPLLSIVRDLRKQRHNCLSLPQQYIFCYFIVLIFAKLMA 300 (303)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHhhcccccCCHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999998643
No 11
>PHA02746 protein tyrosine phosphatase; Provisional
Probab=99.93 E-value=1.1e-26 Score=258.11 Aligned_cols=145 Identities=24% Similarity=0.284 Sum_probs=126.3
Q ss_pred CccchhhHHHHHHHHHhCCCcchHHHHHHccccCCCcceecccCCCCCCCCCCCCCCCCCCCeEEecCCC----------
Q psy4951 1007 RPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVD---------- 1076 (1189)
Q Consensus 1007 ~~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~~~~~~~~~n~~knR~~~v~~~d~~RV~L~~~~---------- 1076 (1189)
+.+.+.+|.++..+.. -...+.+||.++...+...++..+..++|+.||||.||+||||+||+|+..+
T Consensus 7 ~~~~~~~~~~~~~~~~--~~~~~~~e~~~i~~~~~~~t~~~~~~~~N~~KNRy~di~p~D~sRV~L~~~~~~~~~~~~~~ 84 (323)
T PHA02746 7 EIFNAFDFFDKTNHAK--FCEFVLLEHAEVMDIPIRGTTNHFLKKENLKKNRFHDIPCWDHSRVVINAHESLKMFDVGDS 84 (323)
T ss_pred ccCCHHHHHHHhcCCC--HHHHHHHHHHHHhcCCCCcchhhccChhhccccCCCCCCCCcCCEEEecCCCCccccccccc
Confidence 3466777777444332 2236999999999888888999999999999999999999999999998643
Q ss_pred ---------CCCCCcccccccCCCCCCCC---------------------------------------------------
Q psy4951 1077 ---------DEEGSDYINANYVPGHNSPR--------------------------------------------------- 1096 (1189)
Q Consensus 1077 ---------~~~~~dYInAs~v~~~~~~~--------------------------------------------------- 1096 (1189)
+++.+||||||||+|+...+
T Consensus 85 ~~~~~~~~~~~~~~dYINAsyV~g~~~~~~fIaTQ~Pl~~T~~dFW~MIwe~~v~vIVMLt~~~e~~~kc~~YWP~~~~~ 164 (323)
T PHA02746 85 DGKKIEVTSEDNAENYIHANFVDGFKEANKFICAQGPKEDTSEDFFKLISEHESQVIVSLTDIDDDDEKCFELWTKEEDS 164 (323)
T ss_pred cccccccccCCCCCCeEEEecccCCCCCCeEEEeCCCChhhHHHHHHHHHhhCCCEEEEecccccCCccCCCCCCCCCCC
Confidence 23458999999999998655
Q ss_pred --------------------------------------------------------------------------------
Q psy4951 1097 -------------------------------------------------------------------------------- 1096 (1189)
Q Consensus 1097 -------------------------------------------------------------------------------- 1096 (1189)
T Consensus 165 ~~~~g~~~V~~~~~~~~~~~~~~~l~l~~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~~i~~v~~~~~~~~~~~~~~~ 244 (323)
T PHA02746 165 ELAFGRFVAKILDIIEELSFTKTRLMITDKISDTSREIHHFWFPDWPDNGIPTGMAEFLELINKVNEEQAELIKQADNDP 244 (323)
T ss_pred CeEEcCEEEEEEEEEEcCCeEEEEEEEEECCCCCceEEEEEEECCCCCCCcCCCHHHHHHHHHHHHHHHHHHhhhhccCC
Confidence
Q ss_pred ---------------CcceEEeHHHHHHHhcCCCCCCHHHHHHHHHhCccccccChhhhhhHHHHHHHHHhc
Q psy4951 1097 ---------------RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEG 1153 (1189)
Q Consensus 1097 ---------------rtg~fi~~~~~~~~~~~~~~~dv~~~v~~~r~~R~~~v~~~~Qy~f~y~~~~~~~~~ 1153 (1189)
|||+|||+|+++++++.++.+||+++|++||+||++|||+.+||.|||++|.++|..
T Consensus 245 ~~~~PIvVHCsaGvGRTGtfcaid~~l~~l~~~~~vdv~~~V~~lR~qR~~~Vqt~~QY~F~y~~l~~~l~~ 316 (323)
T PHA02746 245 QTLGPIVVHCSAGIGRAGTFCAIDNALEQLEKEKEVCLGEIVLKIRKQRHSSVFLPEQYAFCYKALKYAIIE 316 (323)
T ss_pred CCCCCEEEEcCCCCCcchhHHHHHHHHHHHHhcCCCCHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998754
No 12
>PHA02747 protein tyrosine phosphatase; Provisional
Probab=99.93 E-value=1.7e-26 Score=255.73 Aligned_cols=148 Identities=21% Similarity=0.300 Sum_probs=131.2
Q ss_pred CCccchhhHHHHHHHHHhCCCcchHHHHHHccccCCCcceecccCCCCCCCCCCCCCCCCCCCeEEecCCCCCCCCcccc
Q psy4951 1006 SRPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYIN 1085 (1189)
Q Consensus 1006 ~~~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~~~~~~~~~n~~knR~~~v~~~d~~RV~L~~~~~~~~~dYIn 1085 (1189)
.+.+.+++|.+++++....+ .+.+||+++.....+.++..+..++|+.||||.||+||||+||+|...++ ..+||||
T Consensus 6 ~~~~~~~~f~~~~~~~~~~~--~i~~E~~~i~~~~~~~~~~~~~~~~N~~kNRy~di~p~D~sRV~L~~~~~-~~~dYIN 82 (312)
T PHA02747 6 FAECRAIDFLKRRNQLNCFG--IIRDEHHQIILKPFDGLIANFEKPENQPKNRYWDIPCWDHNRVILDSGGG-STSDYIH 82 (312)
T ss_pred ccccCHHHHHHHHhCCCHHH--HHHHHHHHHhcCCCCChhhhhhCchhhccCCCCCCCCCCCCEeEecCCCC-CCCCcEE
Confidence 45688888888777664433 69999999987777778888999999999999999999999999986433 4689999
Q ss_pred cccCCCCCCCC---------------------------------------------------------------------
Q psy4951 1086 ANYVPGHNSPR--------------------------------------------------------------------- 1096 (1189)
Q Consensus 1086 As~v~~~~~~~--------------------------------------------------------------------- 1096 (1189)
||||+|+..++
T Consensus 83 AsyV~g~~~~~~yIaTQ~Pl~~T~~dFW~MVwe~~~~~IVMLt~~~~e~g~~kc~~YWp~~~~~~~~~g~~~V~~~~~~~ 162 (312)
T PHA02747 83 ANWIDGFEDDKKFIATQGPFAETCADFWKAVWQEHCSIIVMLTPTKGTNGEEKCYQYWCLNEDGNIDMEDFRIETLKTSV 162 (312)
T ss_pred eeeecCCCCCCeEEEeCCCcchhHHHHHHHHHhccCCEEEEcccccccCCcccccccCCCCCCCCeEeeeEEEEEEEEEe
Confidence 99999998766
Q ss_pred -------------------------------------------------------------------------------C
Q psy4951 1097 -------------------------------------------------------------------------------R 1097 (1189)
Q Consensus 1097 -------------------------------------------------------------------------------r 1097 (1189)
|
T Consensus 163 ~~~~~~~~l~l~~~~~~~~r~V~h~~y~~Wpd~~~P~~~~~~l~fi~~v~~~~~~~~~~~~~~~~~~~PIvVHCsaGvGR 242 (312)
T PHA02747 163 RAKYILTLIEITDKILKDSRKISHFQCSEWFEDETPSDHPDFIKFIKIIDINRKKSGKLFNPKDALLCPIVVHCSDGVGK 242 (312)
T ss_pred cCCeEEEEEEEEECCCCCceEEEEEEECCCCCCCCCCChHHHHHHHHHHHHHHHHhhccccccccCCCCEEEEecCCCcc
Confidence 9
Q ss_pred cceEEeHHHHHHHhcCCCCCCHHHHHHHHHhCccccccChhhhhhH---HHHHHHHHhcCCC
Q psy4951 1098 SGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICI---HQCLLAVLEGNEN 1156 (1189)
Q Consensus 1098 tg~fi~~~~~~~~~~~~~~~dv~~~v~~~r~~R~~~v~~~~Qy~f~---y~~~~~~~~~~~~ 1156 (1189)
||+|||+|++++++..++.+||+++|++||+||++||||.+||.|| |++|+.++.....
T Consensus 243 tGtfcaidi~i~~l~~~~~v~v~~~V~~lR~qR~~~Vqt~~QY~F~~~~Y~~l~~~~~~~~~ 304 (312)
T PHA02747 243 TGIFCAVDICLNQLVKRKAICLAKTAEKIREQRHAGIMNFDDYLFIQPGYEVLHYFLSKIKA 304 (312)
T ss_pred hhHHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999 9999999887544
No 13
>PHA02738 hypothetical protein; Provisional
Probab=99.92 E-value=4.1e-26 Score=253.24 Aligned_cols=147 Identities=22% Similarity=0.310 Sum_probs=125.6
Q ss_pred CCCCccchhhHHHHHHHHHhCCCcchHHHHHHccccCCCcceecccCCCCCCCCCCCCCCCCCCCeEEecCCCCCCCCcc
Q psy4951 1004 ETSRPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDY 1083 (1189)
Q Consensus 1004 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~~~~~~~~~n~~knR~~~v~~~d~~RV~L~~~~~~~~~dY 1083 (1189)
+..+.+..++|.+++++.. ....+.+||+.|.......++..+. .|+.||||.||+||||+||+|+.. ...+||
T Consensus 4 ~~~~~~~~~~fl~~~~~~~--~~~~i~~E~~~i~~~~~~~t~~~~~--~N~~kNR~~~v~~~d~sRV~L~~~--~~~~dY 77 (320)
T PHA02738 4 CKFRELKYAEFLALMEKSD--CEEVITREHQKVISEKVDGTFNAEK--KNRKLNRYLDAVCFDHSRVILPAE--RNRGDY 77 (320)
T ss_pred cccccCCHHHHHHHHhCCC--HHHHHHHHHHHHhcCCCCcchhHHH--HhhhhCCCCCcCCCcCCEEEeCCC--CCCCCc
Confidence 4456677888887665443 3347999999987666666666554 499999999999999999999743 346899
Q ss_pred cccccCCCCCCCC-------------------------------------------------------------------
Q psy4951 1084 INANYVPGHNSPR------------------------------------------------------------------- 1096 (1189)
Q Consensus 1084 InAs~v~~~~~~~------------------------------------------------------------------- 1096 (1189)
||||||||+..++
T Consensus 78 INAsyVdg~~~~~kfI~TQ~Pl~~T~~dFW~MVwe~~v~~IVmL~~~~E~~~~kc~~YWp~~~~~~~~~g~f~V~~~~~~ 157 (320)
T PHA02738 78 INANYVDGFEYKKKFICGQAPTRQTCYDFYRMLWMEHVQIIVMLCKKKENGREKCFPYWSDVEQGSIRFGKFKITTTQVE 157 (320)
T ss_pred eEeEEecCCCCCceeEEecCCChHHHHHHHHHHHHhCCcEEEEeeehhhCCeeeccccCCCCCCCceEeccEEEEEEEEE
Confidence 9999999998766
Q ss_pred --------------------------------------------------------------------------------
Q psy4951 1097 -------------------------------------------------------------------------------- 1096 (1189)
Q Consensus 1097 -------------------------------------------------------------------------------- 1096 (1189)
T Consensus 158 ~~~~~~~~~l~l~~~~~~~r~V~h~~y~~Wpd~gvP~~~~~~l~fi~~V~~~~~~~~~~~~~~~~~~~~~~PIVVHCs~G 237 (320)
T PHA02738 158 THPHYVKSTLLLTDGTSATQTVTHFNFTAWPDHDVPKNTSEFLNFVLEVRQCQKELAQESLQIGHNRLQPPPIVVHCNAG 237 (320)
T ss_pred ecCCeEEEEEEEEeCCCCcEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccCccccCCCCeEEEcCCC
Confidence
Q ss_pred --CcceEEeHHHHHHHhcCCCCCCHHHHHHHHHhCccccccChhhhhhHHHHHHHHHhcCCC
Q psy4951 1097 --RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156 (1189)
Q Consensus 1097 --rtg~fi~~~~~~~~~~~~~~~dv~~~v~~~r~~R~~~v~~~~Qy~f~y~~~~~~~~~~~~ 1156 (1189)
|||+|||+|+++++++.++.+||+++|++||+||++|||+.+||.|||++|++|+.....
T Consensus 238 iGRtGtFcaidi~i~~~~~~~~vdv~~~V~~lR~qR~~~vqt~~QY~F~y~~l~~y~~~~~~ 299 (320)
T PHA02738 238 LGRTPCYCVVDISISRFDACATVSIPSIVSSIRNQRYYSLFIPFQYFFCYRAVKRYVNLTVN 299 (320)
T ss_pred CChhhhhhHHHHHHHHHHhcCCcCHHHHHHHHHhhhhhccCCHHHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999999987554
No 14
>KOG0793|consensus
Probab=99.87 E-value=4.7e-22 Score=220.41 Aligned_cols=149 Identities=28% Similarity=0.389 Sum_probs=126.0
Q ss_pred cCCCCccchhhHH-HHHHHHHhCCCcchHHHHHHcccc-CCCcceecccCCCCCCCCCCCCCCCCCCCeEEecCCCCCCC
Q psy4951 1003 VETSRPIRLENFA-EHYRIMSADSDFRFSEEFEELKHV-GREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEG 1080 (1189)
Q Consensus 1003 ~~~~~~i~~~~~~-~~~~~~~~~~~~~~~~E~~~l~~~-~~~~~~~~~~~~~n~~knR~~~v~~~d~~RV~L~~~~~~~~ 1080 (1189)
......|+...+. .|++... .++.++.+||+.|+.. .++..+..++.++|..|||...+|||||+||.|+-....++
T Consensus 708 A~~nmDISTGHmiLsymedhL-rnk~rlekeWealc~YqaEpn~r~~aq~e~~a~kNR~~a~LpyDhsrV~l~~~~s~s~ 786 (1004)
T KOG0793|consen 708 AQSNMDISTGHMILSYMEDHL-RNKNRLEKEWEALCAYQAEPNSRFVAQREENAPKNRSLAVLPYDHSRVLLKAENSHSH 786 (1004)
T ss_pred cccccccccchhHHHHHHHHh-hCchHHHHHHHHHHHhhcCcchhhhhcccccccccCCCCccccccceeeeccccCccc
Confidence 3444566666644 4555443 3445799999999976 45567888999999999999999999999999998777899
Q ss_pred CcccccccCCCCCCCC----------------------------------------------------------------
Q psy4951 1081 SDYINANYVPGHNSPR---------------------------------------------------------------- 1096 (1189)
Q Consensus 1081 ~dYInAs~v~~~~~~~---------------------------------------------------------------- 1096 (1189)
+||||||+|-..+...
T Consensus 787 ~dYiNAS~I~DhDPR~paYIAtQgPl~stiA~FWQmvWe~G~~vIV~Lt~l~Engv~qc~rYWPdeGselyhiyEV~LVS 866 (1004)
T KOG0793|consen 787 SDYINASPIMDHDPRNPAYIATQGPLPSTIADFWQMVWESGCVVIVMLTPLAENGVRQCYRYWPDEGSELYHIYEVNLVS 866 (1004)
T ss_pred cccccccccccCCCCccceeeccCCCchHHHHHHHHHHHcCcEEEEEecChhhcchhhhhhcCCCCCcceeeeEEeeeeh
Confidence 9999999998877766
Q ss_pred -------------------------------------------------------------------------CcceEEe
Q psy4951 1097 -------------------------------------------------------------------------RSGTLIA 1103 (1189)
Q Consensus 1097 -------------------------------------------------------------------------rtg~fi~ 1103 (1189)
||||||+
T Consensus 867 EHIWceDfLVRSFYLKNlqtseTRTvTQFHfLSWp~egvPasarslLdFRRKVNK~YRGRScpIiVH~sdGaGRTG~Yil 946 (1004)
T KOG0793|consen 867 EHIWCEDFLVRSFYLKNLQTSETRTVTQFHFLSWPDEGVPASARSLLDFRRKVNKCYRGRSCPIIVHCSDGAGRTGTYIL 946 (1004)
T ss_pred hhhhhhhHHHHHHHHhhcccccceeeeeeeeecccccCCccchHHHHHHHHHhhhhccCCCCceEEEccCCCCccceeee
Confidence 9999999
Q ss_pred HHHHHHHhc-CCCCCCHHHHHHHHHhCccccccChhhhhhHHHHHHHHHh
Q psy4951 1104 LDRILQSIN-HSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLE 1152 (1189)
Q Consensus 1104 ~~~~~~~~~-~~~~~dv~~~v~~~r~~R~~~v~~~~Qy~f~y~~~~~~~~ 1152 (1189)
+|+++.+|. .-+.+||..++.+||.||++||+|.+||.|.+-||.+-+.
T Consensus 947 iDmvl~Rm~kGakeIDIaATlEHlRDQR~GmVaTkdQFef~l~aVAeEVn 996 (1004)
T KOG0793|consen 947 IDMVLNRMAKGAKEIDIAATLEHLRDQRPGMVATKDQFEFALTAVAEEVN 996 (1004)
T ss_pred HHHHHHHHhccchhhhHHHHHHHHhhcCCcceeehhhhHHHHHHHHHHHH
Confidence 999999885 6788999999999999999999999999999999987443
No 15
>KOG0792|consensus
Probab=99.86 E-value=8.3e-22 Score=230.66 Aligned_cols=127 Identities=38% Similarity=0.603 Sum_probs=117.0
Q ss_pred chHHHHHHccccCCCcceecccCCCCCCCCCCCCCCCCCCCeEEecCCCCCCCCcccccccCCCCCCCC-----------
Q psy4951 1028 RFSEEFEELKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPR----------- 1096 (1189)
Q Consensus 1028 ~~~~E~~~l~~~~~~~~~~~~~~~~n~~knR~~~v~~~d~~RV~L~~~~~~~~~dYInAs~v~~~~~~~----------- 1096 (1189)
.+..||++|.+..+...|.++.+++|..||||+||+|||.+||.|.+..+ .+..|||||+|+-.-...
T Consensus 869 ~v~~efE~i~rkkp~~~~~~a~lpeN~~KNRyrdvlPYD~tRV~L~~~~~-~nagYINAS~i~ipvgg~e~~YIA~QGPL 947 (1144)
T KOG0792|consen 869 MVFTEFEQIYRKKPGMACSIARLPENAPKNRYRDVLPYDDTRVELQPSKD-NNAGYINASHIEIPVGGIENRYIACQGPL 947 (1144)
T ss_pred chHHHHHHHhhhCCCceeeeccccccccccccCCcCCCcCceeeeccCCC-CCcccccceeeEeeecceeEEEEEecCCC
Confidence 69999999998888999999999999999999999999999999996443 467899999998654433
Q ss_pred --------------------------------------------------------------------------------
Q psy4951 1097 -------------------------------------------------------------------------------- 1096 (1189)
Q Consensus 1097 -------------------------------------------------------------------------------- 1096 (1189)
T Consensus 948 p~T~~DFWQMVWEQ~~~lIvMlT~e~EggR~KchqYWPr~~~~t~~ygrf~v~~~~~~~t~~y~tr~m~l~~~~t~eeR~ 1027 (1144)
T KOG0792|consen 948 PHTCTDFWQMVWEQGSTLIVMLTTEVEGGRVKCHQYWPRLGHETMEYGRFQVTCVFEQQTTCYVTREMTLKDLQTREERT 1027 (1144)
T ss_pred cchHHHHHHHHHhcCceEEEEEeehhhcCeeccccccCCCCccceeccceEEEEEEecccccEEEEeEEEeeccCCceee
Confidence
Q ss_pred ------------------------------------------------CcceEEeHHHHHHHhcCCCCCCHHHHHHHHHh
Q psy4951 1097 ------------------------------------------------RSGTLIALDRILQSINHSDVVDIFGIVYHMRK 1128 (1189)
Q Consensus 1097 ------------------------------------------------rtg~fi~~~~~~~~~~~~~~~dv~~~v~~~r~ 1128 (1189)
|||+.|++|.+|..++.+..+|+.++|..||.
T Consensus 1028 V~hLQYtaWPDHg~P~D~~~FL~FleevrsvR~~t~pPilvHCSAGiGRTGVlIl~e~~l~lle~Ne~vdi~divr~mR~ 1107 (1144)
T KOG0792|consen 1028 VWHLQYTAWPDHGVPDDPNDFLDFLEEVRSVRRGTNPPILVHCSAGIGRTGVLILMETALCLLEHNEPVDILDIVRTMRD 1107 (1144)
T ss_pred eeeeeecccccCCCCCChHHHHHHHHHHHHHhccCCCCeEEEccCCCCcceehHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999
Q ss_pred CccccccChhhhhhHHHHHHHHHhcCC
Q psy4951 1129 ERVWMVQTEQQYICIHQCLLAVLEGNE 1155 (1189)
Q Consensus 1129 ~R~~~v~~~~Qy~f~y~~~~~~~~~~~ 1155 (1189)
||..||||+.||+|||++|+.+++...
T Consensus 1108 QR~~mVQT~~QYkFVyevil~~l~~~~ 1134 (1144)
T KOG0792|consen 1108 QRAMMVQTLSQYKFVYEVILRVLKRGR 1134 (1144)
T ss_pred HHhhhccchHHhhHHHHHHHHHHHhcc
Confidence 999999999999999999999998765
No 16
>smart00194 PTPc Protein tyrosine phosphatase, catalytic domain.
Probab=99.85 E-value=6.8e-22 Score=216.61 Aligned_cols=121 Identities=50% Similarity=0.851 Sum_probs=109.8
Q ss_pred chHHHHHHccccCCC-cceecccCCCCCCCCCCCCCCCCCCCeEEecCCCCCCCCcccccccCCCCCCCC----------
Q psy4951 1028 RFSEEFEELKHVGRE-QSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPR---------- 1096 (1189)
Q Consensus 1028 ~~~~E~~~l~~~~~~-~~~~~~~~~~n~~knR~~~v~~~d~~RV~L~~~~~~~~~dYInAs~v~~~~~~~---------- 1096 (1189)
.|.+||+.|...... .++..+..++|+.||||.||+|||++||+|...++ +.+||||||||+|+..++
T Consensus 1 ~~~~e~~~i~~~~~~~~~~~~~~~~~n~~kNR~~~v~~~d~~RV~l~~~~~-~~~~YInAs~v~~~~~~~~fI~tQ~P~~ 79 (258)
T smart00194 1 GLEEEFEKLDRLKPDDESCTVAARPENRDKNRYKDVLPYDHTRVKLTPPPG-EGSDYINASYIDGPNGPKAYIATQGPLP 79 (258)
T ss_pred ChHHHHHHhhccCCCCccccccCCccccccCCCCCCCCCCCCEeEccCCCC-CCCCceeeeeEecCCCccceEEeCCCch
Confidence 378999999876555 78899999999999999999999999999985433 568999999999996544
Q ss_pred --------------------------------------------------------------------------------
Q psy4951 1097 -------------------------------------------------------------------------------- 1096 (1189)
Q Consensus 1097 -------------------------------------------------------------------------------- 1096 (1189)
T Consensus 80 ~t~~dFW~mv~~~~~~~IVmL~~~~e~~~~~~~~Ywp~~~~~~~~g~~~V~~~~~~~~~~~~~~~l~v~~~~~~~~~~v~ 159 (258)
T smart00194 80 STVEDFWRMVWEEKVTTIVMLTELEEKGREKCAQYWPEEEEPLTYGDITVTLKSVEKVDDYTIRTLEVTNTGCSETRTVT 159 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEeccceeCCEeeccccCCCCCCcceECCEEEEEEEEEecCCEEEEEEEEEECCCCCcEEEE
Confidence
Q ss_pred ----------------------------------------------CcceEEeHHHHHHHhcCCCCCCHHHHHHHHHhCc
Q psy4951 1097 ----------------------------------------------RSGTLIALDRILQSINHSDVVDIFGIVYHMRKER 1130 (1189)
Q Consensus 1097 ----------------------------------------------rtg~fi~~~~~~~~~~~~~~~dv~~~v~~~r~~R 1130 (1189)
|||+|||+|++++++..++.+|++++|+.||+||
T Consensus 160 ~~~y~~W~d~~~P~~~~~~~~~i~~v~~~~~~~~~pivVHC~~G~gRsg~f~a~~~~~~~l~~~~~v~v~~~v~~lR~~R 239 (258)
T smart00194 160 HYHYTNWPDHGVPESPKSILDLVRAVRKSQSTSTGPIVVHCSAGVGRTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQR 239 (258)
T ss_pred EEeeCCCCCCCCCCCHHHHHHHHHHHHHhhccCCCCEEEEeCCCCCccchhhHHHHHHHHHHHcCCCCHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999
Q ss_pred cccccChhhhhhHHHHHHH
Q psy4951 1131 VWMVQTEQQYICIHQCLLA 1149 (1189)
Q Consensus 1131 ~~~v~~~~Qy~f~y~~~~~ 1149 (1189)
++||++.+||.|||++|++
T Consensus 240 ~~~v~~~~Qy~f~~~~l~~ 258 (258)
T smart00194 240 PGMVQTEEQYIFLYRAILE 258 (258)
T ss_pred ccccCCHHHHHHHHHHHhC
Confidence 9999999999999999873
No 17
>COG5599 PTP2 Protein tyrosine phosphatase [Signal transduction mechanisms]
Probab=99.83 E-value=2.7e-21 Score=193.03 Aligned_cols=107 Identities=35% Similarity=0.524 Sum_probs=92.3
Q ss_pred ceecccCCCCCCCCCCCCCCCCCCCeEEecCCCCCCCCcccccccCCCCCCCC---------------------------
Q psy4951 1044 SCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPR--------------------------- 1096 (1189)
Q Consensus 1044 ~~~~~~~~~n~~knR~~~v~~~d~~RV~L~~~~~~~~~dYInAs~v~~~~~~~--------------------------- 1096 (1189)
.+.....+.|-.||||.||+||+++||.|+.. .+.+||||||||+-...+-
T Consensus 44 s~~~sls~~~~~rNRYsnIvPYe~tRV~Lk~~--k~~~DYINAS~ik~~~~~yIAtQgP~~~t~ddFW~mvw~n~~~~gv 121 (302)
T COG5599 44 SDDTSLSSTNYARNRYSNIVPYEHTRVHLKYG--KSINDYINASYIKTPRGKYIATQGPKPETIDDFWKMVWHNVPNNGV 121 (302)
T ss_pred ccccccCccccccccccccccccCceeeccCC--CchhhcccceeeecCCCceEEecCCCCchHHHHHHHHHhcCCCceE
Confidence 34456778899999999999999999999854 5678999999999776433
Q ss_pred --------------------------------------------------------------------------------
Q psy4951 1097 -------------------------------------------------------------------------------- 1096 (1189)
Q Consensus 1097 -------------------------------------------------------------------------------- 1096 (1189)
T Consensus 122 IVmLt~l~E~~rekc~qYWp~~~~~~~~~G~~v~~~~~~e~~~d~~~~~~~f~L~~~~~~~k~Ihhf~y~nW~D~~~p~i 201 (302)
T COG5599 122 IVMLTSLPEYNREKCDQYWPLGYDDTLIIGLRVIKQKKYELFNDNIVNVHNFELTSINGPPKKIHHFQYINWVDFNVPDI 201 (302)
T ss_pred EEEecChHHHhHHHHhhhCCCCcCcceeeeeEEEEEecccccccceeeeeecccccCCCCccEEEEEEecCccccCCcCH
Confidence
Q ss_pred -----------------------------CcceEEeHHHHHHHhcCC---------CCCCHHHHHHHHHhCccccccChh
Q psy4951 1097 -----------------------------RSGTLIALDRILQSINHS---------DVVDIFGIVYHMRKERVWMVQTEQ 1138 (1189)
Q Consensus 1097 -----------------------------rtg~fi~~~~~~~~~~~~---------~~~dv~~~v~~~r~~R~~~v~~~~ 1138 (1189)
|||||||+|.++++++.. ...-|+++|.+||+||+.|||+.+
T Consensus 202 ~sl~~~~~sl~~sp~~t~piiVHCSAGvGRTGTFIalD~ll~~~~~~~~~t~~~~~t~D~if~iV~~LRsQRmkmVQn~~ 281 (302)
T COG5599 202 RSLTEVIHSLNDSPVRTGPIIVHCSAGVGRTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLSLRSQRMKMVQNKT 281 (302)
T ss_pred HHHHHHHHHhhcCcCCCCCEEEEeccCCCCcceeeeHHHHHhccccccCCCchhhhhhhHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999998754 223389999999999999999999
Q ss_pred hhhhHHHHHHHHHh
Q psy4951 1139 QYICIHQCLLAVLE 1152 (1189)
Q Consensus 1139 Qy~f~y~~~~~~~~ 1152 (1189)
||+|||++++++.+
T Consensus 282 Qf~flY~~~~~l~~ 295 (302)
T COG5599 282 QFKFLYDAFLELNK 295 (302)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999873
No 18
>cd00047 PTPc Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr (pTyr) residues, instead of pSer or pThr. This family has a distinctive active site signature motif, HCSAGxGRxG. Characterized as either transmembrane, receptor-like or non-transmembrane (soluble) PTPs. Receptor-like PTP domains tend to occur in two copies in the cytoplasmic region of the transmembrane proteins, only one copy may be active.
Probab=99.68 E-value=2.5e-17 Score=177.60 Aligned_cols=53 Identities=47% Similarity=0.713 Sum_probs=51.5
Q ss_pred CcceEEeHHHHHHHhcCCCCCCHHHHHHHHHhCccccccChhhhhhHHHHHHH
Q psy4951 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLA 1149 (1189)
Q Consensus 1097 rtg~fi~~~~~~~~~~~~~~~dv~~~v~~~r~~R~~~v~~~~Qy~f~y~~~~~ 1149 (1189)
|||+|||+|.++++++.++.+|+.+++++||+||++||++.+||.|||++|++
T Consensus 179 Rsg~~~a~~~~~~~~~~~~~~~~~~~v~~iR~~R~~~v~~~~Qy~f~~~~l~~ 231 (231)
T cd00047 179 RTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQTEEQYIFLYRAILE 231 (231)
T ss_pred ccchHHHHHHHHHHHHhcCCCCHHHHHHHHHhccccccCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999873
No 19
>PF00102 Y_phosphatase: Protein-tyrosine phosphatase; InterPro: IPR000242 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry repesents several receptor and non-receptor protein-tyrosine phosphatases. Structurally, all known receptor PTPases, are made up of a variable length extracellular domain, followed by a transmembrane region and a C-terminal catalytic cytoplasmic domain. Some of the receptor PTPases contain fibronectin type III (FN-III) repeats, immunoglobulin-like domains, MAM domains or carbonic anhydrase-like domains in their extracellular region. The cytoplasmic region generally contains two copies of the PTPase domain. The first seems to have enzymatic activity, while the second is inactive. The inactive domains of tandem phosphatases can be divided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre []. PTPase domains consist of about 300 amino acids. There are two conserved cysteines, the second one has been shown to be absolutely required for activity. Furthermore, a number of conserved residues in its immediate vicinity have also been shown to be important.; GO: 0004725 protein tyrosine phosphatase activity, 0006470 protein dephosphorylation; PDB: 3O4T_A 3O4S_A 3O4U_A 2A3K_A 2QDP_A 2QDC_A 2QDM_A 2HVL_A 1ZC0_A 3D44_A ....
Probab=99.64 E-value=2.9e-17 Score=178.54 Aligned_cols=53 Identities=32% Similarity=0.532 Sum_probs=51.9
Q ss_pred CcceEEeHHHHHHHhcCCCCCCHHHHHHHHHhCccccccChhhhhhHHHHHHH
Q psy4951 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLA 1149 (1189)
Q Consensus 1097 rtg~fi~~~~~~~~~~~~~~~dv~~~v~~~r~~R~~~v~~~~Qy~f~y~~~~~ 1149 (1189)
|+|+||+++++++++..++.+||.++++.||+||++||++.+||.|||++|+|
T Consensus 183 Rsg~f~~~~~~~~~~~~~~~~~v~~~~~~lR~~R~~~i~~~~qy~f~~~~~~e 235 (235)
T PF00102_consen 183 RSGTFCAIDILIEQLKKEGEVDVFEIVKKLRQQRPGAIQSPEQYRFCYMAVLE 235 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHSEECHHHHHHHHHTTSTTSSSSHHHHHHHHHHHHH
T ss_pred cccccccchhhccccccccchhhHHHHHHHHhhCCCccCCHHHHHHHHHHHhC
Confidence 99999999999999999888999999999999999999999999999999986
No 20
>KOG0196|consensus
Probab=99.63 E-value=7.7e-15 Score=168.10 Aligned_cols=196 Identities=21% Similarity=0.372 Sum_probs=150.9
Q ss_pred CcEEEeeccCCCCCcceEEEEEeCcEEEEEeeCCC---CC-CceEEEEEEcCCC-e--------EEE-----eeccccEE
Q psy4951 549 TPIQRHDRLYPEPITRINATEITDTSVSLTWDSPR---GE-YNAFEVQYLNTEG-F--------LIQ-----NLTLHTSI 610 (1189)
Q Consensus 549 ~~~~~~~~t~p~~P~~l~v~~v~~~sv~l~W~~p~---g~-i~~Y~V~~~~~~~-~--------~~~-----~~~~~~~~ 610 (1189)
++....-+.+|++|.+|... +..+++.|.|.+|. |. -..|.|.++.-.+ . .+. ....++++
T Consensus 322 Dp~~mpCT~PPSaP~nlis~-vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V 400 (996)
T KOG0196|consen 322 DPPSMPCTRPPSAPRNLISN-VNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSV 400 (996)
T ss_pred CCCCCCCCCCCCccceeeee-cccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceE
Confidence 33334446788999999876 89999999999995 21 2357777655332 1 111 12357889
Q ss_pred EEcCCCCCCEEEEEEEEEeCCCcceee-eccceeEEEEeccCCCCCcccccccccceeecccccceeeeecccceEEEEe
Q psy4951 611 VIGDLKPHRNYTFTVIVRSGTESSVLR-RSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFFQAEKFHPIDVQPGDITFEW 689 (1189)
Q Consensus 611 ~l~~L~p~t~Y~~~V~A~~~~g~~~~~-~s~~~s~~~~T~~~~P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~tsv~l~W 689 (1189)
++.||.|.+.|+|.|.|+|+.-. ... .....++.++|...+|+++. .++....+.+++.|+|
T Consensus 401 ~v~~L~ah~~YTFeV~AvNgVS~-lsp~~~~~a~vnItt~qa~ps~V~----------------~~r~~~~~~~sitlsW 463 (996)
T KOG0196|consen 401 TVSDLLAHTNYTFEVEAVNGVSD-LSPFPRQFASVNITTNQAAPSPVS----------------VLRQVSRTSDSITLSW 463 (996)
T ss_pred EEeccccccccEEEEEEeecccc-cCCCCCcceeEEeeccccCCCccc----------------eEEEeeeccCceEEec
Confidence 99999999999999999998741 111 12234467889999999887 8999999999999999
Q ss_pred cCCCCCCCCcceEEEEEEeccCcccceeeeeeeeecCcceeeEEeC-CCCCCcccceEEEEEEEEEecCCCCccccceee
Q psy4951 690 SLPGSEQNGVIRKFTISYAQEAACNHNQRLHAKFQLPRVNSKKLKG-WPGTLRTDWRSYIYKLQAELGLHMEPETIWKQK 768 (1189)
Q Consensus 690 ~~P~~~~ng~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~pg~~~~~~t~Y~~~V~A~~~~G~g~~s~~~~~ 768 (1189)
..|. .+||.|..|+|.|...+....+.. .+. ...+..+|.| +|+ +.|.|+|||++.+|+|++|....+
T Consensus 464 ~~p~-~png~ildYEvky~ek~~~e~~~~---~~~-t~~~~~ti~gL~p~------t~YvfqVRarT~aG~G~~S~~~~f 532 (996)
T KOG0196|consen 464 SEPD-QPNGVILDYEVKYYEKDEDERSYS---TLK-TKTTTATITGLKPG------TVYVFQVRARTAAGYGPYSGKHEF 532 (996)
T ss_pred CCCC-CCCCcceeEEEEEeecccccccee---EEe-cccceEEeeccCCC------cEEEEEEEEecccCCCCCCCceee
Confidence 9998 469999999999966654422222 145 7778899999 999 999999999999999999999999
Q ss_pred eeccC
Q psy4951 769 MPIPR 773 (1189)
Q Consensus 769 ~t~~~ 773 (1189)
.|.+.
T Consensus 533 qT~~~ 537 (996)
T KOG0196|consen 533 QTLPS 537 (996)
T ss_pred eecCc
Confidence 99855
No 21
>KOG4222|consensus
Probab=99.57 E-value=6.5e-13 Score=157.89 Aligned_cols=309 Identities=19% Similarity=0.219 Sum_probs=210.1
Q ss_pred EEEecCCCCCCeEEEEEEEEeCCccCcceEE-E---------------EEcCCCCccceEEEeeccCCCEEEEEEEcCC-
Q psy4951 432 HILIDQLTPGVKYQFTIRTVSYNLESGVTSL-S---------------ARTMPLIESEVLVVNNQQSTDSVTLRYTPQN- 494 (1189)
Q Consensus 432 ~~~i~~L~p~t~Y~v~V~a~~~~~~s~~~~~-~---------------~~t~P~~p~~~~v~~~~~t~~sv~vsW~p~~- 494 (1189)
+..+.+|+-.-.|..+..|.+..+++.++.. . ....|.+|....+.. ++.++++++|.+..
T Consensus 475 ~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~s~q~~r~~D~S~~pS~p~~p~v~~--v~~~~v~LsW~~~s~ 552 (1281)
T KOG4222|consen 475 SLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGSSQQFCRCEDPSALPSPPGTPGVVN--VSRTSVTLSWQPTSP 552 (1281)
T ss_pred eeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCcccccccCCChhhCCCCCCCCcccc--CCCceEEecccCCCC
Confidence 4455555555556666666665555443321 1 122445555555553 48999999999543
Q ss_pred --CCCeeEEEEEEEcC--CCCeEEEEecCCcceEEEeCCCCCCeEEEEEEEEeCCcCCCcEEEe--eccCCCCC------
Q psy4951 495 --SNHFDFYRFTLSEP--DIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTPIQRH--DRLYPEPI------ 562 (1189)
Q Consensus 495 --~g~i~~Y~V~~~~~--~~~~~~~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~~~~S~~~~~~--~~t~p~~P------ 562 (1189)
.+++.+|.+++-.. ...|.........+.+.|.+|.|+..|.|.|+|.|..+.|.+.... .++.|..+
T Consensus 553 sg~vP~s~yiieafs~~~~etw~~ta~~v~~t~~~I~gL~P~~sylf~vRa~n~~Gis~Ps~~S~~vrta~a~~~~a~ad 632 (1281)
T KOG4222|consen 553 SGAVPASGYIIEAFSPDLGETWQTTAGRVKTTTYAIRGLKPNLSYLFLVRAENEQGISDPSTSSDPVRTAPADAAAAGAD 632 (1281)
T ss_pred CCccccchhHHHHhhhhhcccccccccccccceeeecCcCccceeeeeeeccccccccCCcccCCccccCCCChhhhhhh
Confidence 35788999987544 3445555455667899999999999999999999987777665433 34444221
Q ss_pred ----------cceE---EEEEeCcEEEEEeeCCC----CCCceEEEEEEcCCCeEEE------eeccccEEEEcCCCCCC
Q psy4951 563 ----------TRIN---ATEITDTSVSLTWDSPR----GEYNAFEVQYLNTEGFLIQ------NLTLHTSIVIGDLKPHR 619 (1189)
Q Consensus 563 ----------~~l~---v~~v~~~sv~l~W~~p~----g~i~~Y~V~~~~~~~~~~~------~~~~~~~~~l~~L~p~t 619 (1189)
..++ ...+.++++.+.|..+. .-|.+|+|.|+........ ......++.+.+|+|++
T Consensus 633 ~~k~~~~ls~~l~~l~~~~~L~asslr~~w~~~kq~~~~~i~g~~I~~r~~~~~~a~~s~~~v~~~t~~s~v~~nl~p~t 712 (1281)
T KOG4222|consen 633 HQKVQRELSNELLRLSNPNVLNASSLRLGWTKDKQHGSQYIQGYRISYRSLGSQLAQWSNAGVTVPTPESVVVPNLKPGT 712 (1281)
T ss_pred HHHHHHhhcccceeeccccccchhheeeeeeeecccCcccccceEEEeccCccccccccccceeccCCcceeccccCCCc
Confidence 1111 22356889999999885 4588999999987662111 12456788899999999
Q ss_pred EEEEEEEEEeCCCcceeeeccceeEEEEeccCCCCCcccccccccceeecccccceeeeecccceEEEEecCCCCC-CCC
Q psy4951 620 NYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFFQAEKFHPIDVQPGDITFEWSLPGSE-QNG 698 (1189)
Q Consensus 620 ~Y~~~V~A~~~~g~~~~~~s~~~s~~~~T~~~~P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~tsv~l~W~~P~~~-~ng 698 (1189)
.|.|.++-+...|- ......+.+..+.|.+.+|+++...+. .+....-..+++.|+|.+|+.+ .||
T Consensus 713 ~ye~f~~Pf~~~~~-s~~g~pS~sk~alt~e~~PSapp~~~~------------~~s~~~~n~Ta~~Vsw~~pp~d~~ng 779 (1281)
T KOG4222|consen 713 NYEFFVRPFFPHGY-SIQGAPSNSKTALTLEEPPSAPPQGVQ------------HVSKGSYNGTAGSVSWAPPPADVQNG 779 (1281)
T ss_pred cceeeccCccCCCc-ceecCCcccccccccccCCCCCCCCcc------------ccccccCCCceeeEEecCCcccccCC
Confidence 99999999887541 112334455567888888887751100 1445556678999999988665 489
Q ss_pred cceEEEEEEeccCcc--cceeeeeeeeecCcceeeEEeC-CCCCCcccceEEEEEEEEEecCCCCccccce
Q psy4951 699 VIRKFTISYAQEAAC--NHNQRLHAKFQLPRVNSKKLKG-WPGTLRTDWRSYIYKLQAELGLHMEPETIWK 766 (1189)
Q Consensus 699 ~i~~Y~i~y~~~~~~--~~~~~~~~~~~~~~~~~~~i~~-~pg~~~~~~t~Y~~~V~A~~~~G~g~~s~~~ 766 (1189)
.+.+|.|........ ... ..+. ....+.+|.+ .+| ..|.|+|.|.|.+|.|+.+...
T Consensus 780 ~~qg~ki~~~~~e~tr~h~n----~t~~-a~~~sv~i~~l~~g------~ay~vtv~a~T~aGvG~~s~p~ 839 (1281)
T KOG4222|consen 780 ILQGYKIECSGGEKTRIHIN----KTTN-ARTGSVTIGNLVTG------IAYSVTVAARTGAGVGVKSPPQ 839 (1281)
T ss_pred cccceeEEeecCcccccccc----cccc-CCCCceEecccccc------ceEEEEEeeecCCccCCCCCCe
Confidence 999999976544322 111 2255 7777889999 999 9999999999999999865444
No 22
>KOG4222|consensus
Probab=99.52 E-value=2.4e-11 Score=144.87 Aligned_cols=284 Identities=17% Similarity=0.206 Sum_probs=181.6
Q ss_pred cCCCCCcceEEEEEeCcEEEEEeeCCC----CCCceEEEEEEcCCCe-E---EEeeccccEEEEcCCCCCCEEEEEEEEE
Q psy4951 557 LYPEPITRINATEITDTSVSLTWDSPR----GEYNAFEVQYLNTEGF-L---IQNLTLHTSIVIGDLKPHRNYTFTVIVR 628 (1189)
Q Consensus 557 t~p~~P~~l~v~~v~~~sv~l~W~~p~----g~i~~Y~V~~~~~~~~-~---~~~~~~~~~~~l~~L~p~t~Y~~~V~A~ 628 (1189)
..|.+|..-.+.+++.++++|+|.+.. +++.+|.|++...+-. . .-.....+.+.|.+|+|++.|.|.|+|.
T Consensus 525 ~~pS~p~~p~v~~v~~~~v~LsW~~~s~sg~vP~s~yiieafs~~~~etw~~ta~~v~~t~~~I~gL~P~~sylf~vRa~ 604 (1281)
T KOG4222|consen 525 ALPSPPGTPGVVNVSRTSVTLSWQPTSPSGAVPASGYIIEAFSPDLGETWQTTAGRVKTTTYAIRGLKPNLSYLFLVRAE 604 (1281)
T ss_pred hCCCCCCCCccccCCCceEEecccCCCCCCccccchhHHHHhhhhhcccccccccccccceeeecCcCccceeeeeeecc
Confidence 346677777888899999999999875 5688899987665432 1 2223467889999999999999999999
Q ss_pred eCCCcceeeeccc--eeEEEEeccCCCCCccc---ccccccc--eeecccccceeeeecccceEEEEecCCCCCCCCcce
Q psy4951 629 SGTESSVLRRSLP--VSAIFQTHESLPGKMDR---TIVDTWH--FVRFFQAEKFHPIDVQPGDITFEWSLPGSEQNGVIR 701 (1189)
Q Consensus 629 ~~~g~~~~~~s~~--~s~~~~T~~~~P~~~~~---~~~~~~~--~~~~~~~~~l~~~~~~~tsv~l~W~~P~~~~ng~i~ 701 (1189)
|..| -+.| .+..++|.+..+..-.. ...-+.. ..++ -....++.++|.+.|..+....-+-|.
T Consensus 605 n~~G-----is~Ps~~S~~vrta~a~~~~a~ad~~k~~~~ls~~l~~l-----~~~~~L~asslr~~w~~~kq~~~~~i~ 674 (1281)
T KOG4222|consen 605 NEQG-----ISDPSTSSDPVRTAPADAAAAGADHQKVQRELSNELLRL-----SNPNVLNASSLRLGWTKDKQHGSQYIQ 674 (1281)
T ss_pred cccc-----ccCCcccCCccccCCCChhhhhhhHHHHHHhhcccceee-----ccccccchhheeeeeeeecccCccccc
Confidence 9887 3333 23345665543322110 0000000 0010 012356688999999988764346899
Q ss_pred EEEEEEeccCcc---cceeeeeeeeecCcceeeEEeC-CCCCCcccceEEEEEEEEEecCCC---CccccceeeeeccCc
Q psy4951 702 KFTISYAQEAAC---NHNQRLHAKFQLPRVNSKKLKG-WPGTLRTDWRSYIYKLQAELGLHM---EPETIWKQKMPIPRR 774 (1189)
Q Consensus 702 ~Y~i~y~~~~~~---~~~~~~~~~~~~~~~~~~~i~~-~pg~~~~~~t~Y~~~V~A~~~~G~---g~~s~~~~~~t~~~~ 774 (1189)
+|.|.|+..... +.... ... ....++.+.+ +|+ +.|.|.++-+...|+ |.+|......++
T Consensus 675 g~~I~~r~~~~~~a~~s~~~---v~~-~t~~s~v~~nl~p~------t~ye~f~~Pf~~~~~s~~g~pS~sk~alt~--- 741 (1281)
T KOG4222|consen 675 GYRISYRSLGSQLAQWSNAG---VTV-PTPESVVVPNLKPG------TNYEFFVRPFFPHGYSIQGAPSNSKTALTL--- 741 (1281)
T ss_pred ceEEEeccCccccccccccc---eec-cCCcceeccccCCC------ccceeeccCccCCCcceecCCccccccccc---
Confidence 999999876652 22112 122 5666788888 999 999999999888665 344444433333
Q ss_pred CCCCCCCcccccccccccccccccccccCCCCCCCCC-ccceeeeeeeEEEEEeccccCcCCCccEEEEEEEEEecC-CC
Q psy4951 775 CGLNPNSDIIKVNENNIKRINSFNIYFLAPPRPSSQV-VPTEVCRTSTTIQIRFRKNYFSEKNGAIIYYTVIVAEDD-SK 852 (1189)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pp~p~~~~-~~~~~~~~~~si~v~~~~~~~~~~~g~I~~y~v~v~~~~-~~ 852 (1189)
..+|-.|+... .+..-.-+.+++.|+|.++-....||++..|.|.+.... .+
T Consensus 742 --------------------------e~~PSapp~~~~~~s~~~~n~Ta~~Vsw~~pp~d~~ng~~qg~ki~~~~~e~tr 795 (1281)
T KOG4222|consen 742 --------------------------EEPPSAPPQGVQHVSKGSYNGTAGSVSWAPPPADVQNGILQGYKIECSGGEKTR 795 (1281)
T ss_pred --------------------------ccCCCCCCCCccccccccCCCceeeEEecCCcccccCCcccceeEEeecCcccc
Confidence 02333454443 233333456778999998855558999999999876433 11
Q ss_pred CCCCCCCCCcccccccCCCCCccccCCccccCCCceeEEEecCCcccccCceecCCCCCCCEEEEEEEEEeCCCC
Q psy4951 853 NSSGLEMPSWRDVQAYSVWPPYQVLEPFQFFKNMSVEDFTIGEESCEGKTGYCNGPLKSGSTYKVKIRAFTTPDK 927 (1189)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~f~vg~~~c~~~~~~~n~~L~p~~~Y~~~v~a~t~~~~ 927 (1189)
. .. +++.. -.......+.|.++..|.|++.|+|.++.
T Consensus 796 ~--------------h~-------n~t~~-----------------a~~~sv~i~~l~~g~ay~vtv~a~T~aGv 832 (1281)
T KOG4222|consen 796 I--------------HI-------NKTTN-----------------ARTGSVTIGNLVTGIAYSVTVAARTGAGV 832 (1281)
T ss_pred c--------------cc-------ccccc-----------------CCCCceEeccccccceEEEEEeeecCCcc
Confidence 0 00 00000 12234555679999999999999999843
No 23
>KOG0789|consensus
Probab=99.49 E-value=4.5e-14 Score=167.20 Aligned_cols=138 Identities=22% Similarity=0.275 Sum_probs=108.4
Q ss_pred hhHHHHHHHHHhCCCcchHHHHHHccccCCCcceecccCCCCCCCCCCCCCCCCCCCeEEecCCCCCCCCcccccccCCC
Q psy4951 1012 ENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPG 1091 (1189)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~~~~~~~~~n~~knR~~~v~~~d~~RV~L~~~~~~~~~dYInAs~v~~ 1091 (1189)
..+..++.........++..||..+....... ........|+.||||.||.|||++||+|.... ..||||||||++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~kNr~~dv~~~d~~rV~l~~~~---~~dyI~A~~v~~ 162 (415)
T KOG0789|consen 87 KFAIDWVQSLLYSLIVEMFKQFRSNKVEKESS-HLCDAFLKNMDKNRYSDVQCLDHTRVKLKPPQ---DKDYIHASKIYF 162 (415)
T ss_pred hHHHHHHHhhhccccHHHHHHHHHhhccCCcc-hhhhhhhccccccccCCcCcccCCeeecCCCC---CcccchhhccCC
Confidence 34445555555455556667776655432221 13344668889999999999999999998422 679999999999
Q ss_pred CC-CCC--------------------------------------------------------------------------
Q psy4951 1092 HN-SPR-------------------------------------------------------------------------- 1096 (1189)
Q Consensus 1092 ~~-~~~-------------------------------------------------------------------------- 1096 (1189)
+. ...
T Consensus 163 ~~~~~~~I~tQ~Pl~~t~~dFW~mv~~~k~~~Ivml~~~~E~~~~kc~~Y~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (415)
T KOG0789|consen 163 PKGPRTAILTQAPLSKTTEDFWRMVFEEKVESVVLLCSDEELGAAECASYFPSKRGVKLTFLEFGKKFVENRKVEMKQQD 242 (415)
T ss_pred cCCCcCceecCCCCcccHHHHHHHHHHcCCCEEEEecchhhccHHHHhhcCcccCCCeeeecccceeEEEeeeeeccccc
Confidence 75 222
Q ss_pred ---------------------------------------------------------------------CcceEEeHHHH
Q psy4951 1097 ---------------------------------------------------------------------RSGTLIALDRI 1107 (1189)
Q Consensus 1097 ---------------------------------------------------------------------rtg~fi~~~~~ 1107 (1189)
|+|+||++|.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~WPd~~~p~~~~~~l~~~~~~~~~~~~~~~P~vVhcsaG~gRtgt~v~~~~~ 322 (415)
T KOG0789|consen 243 QTSTVGLLLLVLPEGLEISSSVVHYHYINWPDHGAPDSVKSILPLLRQSVLELRPKQEPIEVHCSAGAGRAGTLVLIEHA 322 (415)
T ss_pred ccceeeEEEeecCCCccccceEEEEeeCCCccccCCcchHHHHHHHHhhhhhhcCCCCCeEEECCCCCCccchHHHHHHH
Confidence 99999999988
Q ss_pred HHHhc-CCCCCCHHHHHHHHHhCccccccChhhhhhHHHHHHHHHhc
Q psy4951 1108 LQSIN-HSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEG 1153 (1189)
Q Consensus 1108 ~~~~~-~~~~~dv~~~v~~~r~~R~~~v~~~~Qy~f~y~~~~~~~~~ 1153 (1189)
+.++. .....|+..++..+|.||+++||+..||.|+|+++++|+..
T Consensus 323 ~~~~~~~~~~~~~~~~~~~iR~qR~~~vqt~~Qy~f~~~~~~~~~~~ 369 (415)
T KOG0789|consen 323 LIELQGPEGEPPIDEILREIRYQRPGAVQSPLQYLFIYAATLKYIKK 369 (415)
T ss_pred HHHHhcCCCCccHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHH
Confidence 88874 56678899999999999999999999999999999999987
No 24
>KOG0196|consensus
Probab=99.38 E-value=1.4e-11 Score=141.96 Aligned_cols=180 Identities=17% Similarity=0.262 Sum_probs=130.0
Q ss_pred CCCCceeeecccccEEEEEeeCCCC--C-CceEEEEEEEeCCCCCc------cceEE-----eeeccEEEEcCCCCCCeE
Q psy4951 190 PSFPIIEDLRPIEFGLNISWKSDVN--S-RQDNFEVIYNRNDTITE------DPITV-----VTTDSKLLLENLYPGAGY 255 (1189)
Q Consensus 190 P~~p~~~~~~~~~~si~lsW~~p~~--~-~i~~Y~V~~~~~~~~~~------~~~~~-----~~~~~s~~i~~L~p~t~Y 255 (1189)
|++|.-....++.+++.|+|.+|.+ | .-..|.|.++....... ..+.. .-++++.++.+|.|.+.|
T Consensus 332 PSaP~nlis~vn~Ts~~L~W~~P~d~GGR~Di~y~v~Ck~c~~~~~~C~~Cg~~V~f~P~q~gLt~~~V~v~~L~ah~~Y 411 (996)
T KOG0196|consen 332 PSAPRNLISNVNGTSLILEWSPPADTGGREDITYNVICKKCGGGRGACEPCGDNVRFTPRQRGLTETSVTVSDLLAHTNY 411 (996)
T ss_pred CCccceeeeecccceEEEEecCCcccCCCcceEEEEEeeccCCCCCccccCCCCceECCCCCCcccceEEEecccccccc
Confidence 5666644444789999999999842 2 23578888877653321 12222 225678999999999999
Q ss_pred EEEEEEEeC--CccCCc-----ee-eecccCCCCCcceEEEeeeCCeEEEEeeCCC--CCcccEEEEEEEeCCCcceEEe
Q psy4951 256 SIQVFAISH--GLRSEP-----HD-YFQAVYPKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKTWVRL 325 (1189)
Q Consensus 256 ~v~V~a~~~--~~~s~~-----~~-~~~~t~p~pP~~l~v~~~t~~sv~vsW~~p~--~g~i~~Y~V~~~~~~~~~~~~~ 325 (1189)
+|.|.|+|+ +....+ .. ++....|++...++....+.+++.|+|..|. +|.|..|.|+|.+.+..+....
T Consensus 412 TFeV~AvNgVS~lsp~~~~~a~vnItt~qa~ps~V~~~r~~~~~~~sitlsW~~p~~png~ildYEvky~ek~~~e~~~~ 491 (996)
T KOG0196|consen 412 TFEVEAVNGVSDLSPFPRQFASVNITTNQAAPSPVSVLRQVSRTSDSITLSWSEPDQPNGVILDYEVKYYEKDEDERSYS 491 (996)
T ss_pred EEEEEEeecccccCCCCCcceeEEeeccccCCCccceEEEeeeccCceEEecCCCCCCCCcceeEEEEEeecccccccee
Confidence 999999995 222221 11 2334567778889999999999999999987 7889999999998753322222
Q ss_pred ccCCCccEEEecCCCCCCeEEEEEEEEEcCccCCCceeEEeecC
Q psy4951 326 PNVGTSLEAEVTDMVPGEKCMIQVNSVSYSVESAHPLQINHTIS 369 (1189)
Q Consensus 326 ~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~~~~~~t~ 369 (1189)
......+..++++|+|+|.|.|+|+|.+..|.+..+....+.+.
T Consensus 492 ~~~t~~~~~ti~gL~p~t~YvfqVRarT~aG~G~~S~~~~fqT~ 535 (996)
T KOG0196|consen 492 TLKTKTTTATITGLKPGTVYVFQVRARTAAGYGPYSGKHEFQTL 535 (996)
T ss_pred EEecccceEEeeccCCCcEEEEEEEEecccCCCCCCCceeeeec
Confidence 22333488999999999999999999999988876555544443
No 25
>PRK15375 pathogenicity island 1 effector protein StpP; Provisional
Probab=99.19 E-value=1.5e-11 Score=137.23 Aligned_cols=52 Identities=17% Similarity=0.251 Sum_probs=45.6
Q ss_pred CcceEEeHHHHHHHhcCCCCCCHHHHHHHHHhCccc-cccChhhhhhHHHHHHHHHh
Q psy4951 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVW-MVQTEQQYICIHQCLLAVLE 1152 (1189)
Q Consensus 1097 rtg~fi~~~~~~~~~~~~~~~dv~~~v~~~r~~R~~-~v~~~~Qy~f~y~~~~~~~~ 1152 (1189)
|||||||++. ++....+|+.++|..||.||++ |||+.+||.|||++-...+.
T Consensus 479 RTGTFIAi~l----lk~~~~~sle~IV~dlR~qRng~MVQt~eQy~~l~~~~~~~~~ 531 (535)
T PRK15375 479 RTGTMAAALV----LKDNPHSNLEQVRADFRNSRNNRMLEDASQFVQLKAMQAQLLM 531 (535)
T ss_pred hHHHHHHHHH----HhccccCCHHHHHHHHHhcCCccccccHHHHHHHHHHHHHHhh
Confidence 9999999965 4455789999999999999999 99999999999998766553
No 26
>KOG4258|consensus
Probab=99.07 E-value=1.2e-09 Score=126.57 Aligned_cols=337 Identities=15% Similarity=0.175 Sum_probs=179.1
Q ss_pred CcceEEEeeeCCeEEEEeeCCC---CCcccEEEEEEEeC--------------CCcceEEeccCCC--------ccEEEe
Q psy4951 282 PTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTE--------------EDKTWVRLPNVGT--------SLEAEV 336 (1189)
Q Consensus 282 P~~l~v~~~t~~sv~vsW~~p~---~g~i~~Y~V~~~~~--------------~~~~~~~~~~~~~--------~~~~~i 336 (1189)
..++.....+.+++.++|..-. --+..+|.++|+.. +...|..+.+... ..-+.+
T Consensus 491 ~l~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l 570 (1025)
T KOG4258|consen 491 VLQFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLL 570 (1025)
T ss_pred eeeeeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceeh
Confidence 3455566678899999997543 23477999999875 1233443333221 235788
Q ss_pred cCCCCCCeEEEEEEEEEcCccCC----CceeE---EeecCCCCccce-EEeecCcEEEEEeeCC---CcceeEEEEEEEe
Q psy4951 337 TDMVPGEKCMIQVNSVSYSVESA----HPLQI---NHTISPNPATYV-AALVDASNVTLEFPRP---EGRIEYYLVTWRG 405 (1189)
Q Consensus 337 ~~L~p~t~Y~~~V~A~~~~g~s~----~~~~~---~~~t~p~pp~~l-~~~~~~~sv~lsW~~p---~g~i~~Y~V~~~~ 405 (1189)
.+|+|+|+|.+-|++........ .+... +....|.||..+ ....++..+.|+|+|| +|.+++|.|.|..
T Consensus 571 ~~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~~ls~snsSsqi~l~W~pP~~pNG~lt~Ylv~wer 650 (1025)
T KOG4258|consen 571 DGLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLDVLSKSNSSSQILLKWKPPSQPNGNLTHYLVVWER 650 (1025)
T ss_pred hcCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCCCcchhhhccCcchheeEEecCCCCCCCceeEEEEEEEe
Confidence 99999999999999874322221 11111 233457777777 4555667999999997 8999999999983
Q ss_pred eccCCCCcceEeeeecCCC---CCCCCceEEEecCCCCCCeEEEEEEEEeCCccCcceEEEEEcCCCCccceEEEeeccC
Q psy4951 406 IGPEATSTELFTKNVTNDP---EDKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGVTSLSARTMPLIESEVLVVNNQQS 482 (1189)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~~~s~~~~~~~~t~P~~p~~~~v~~~~~t 482 (1189)
.+........+.-... ........+...+..|-.++.= ..+...+-+........-........+..+.-
T Consensus 651 ---~~~~~yl~~~nYC~~~~k~p~~~~~p~~~~ed~d~~~e~e~----~~~~Cc~c~~~~~~~~~e~eea~~~~~FEd~L 723 (1025)
T KOG4258|consen 651 ---QAEDGYLEQRNYCHKGLKLPIRADLPSFDSEDMDPLLEMEG----HTGPCCSCPPTESYPQYEDEEASEQKTFEDFL 723 (1025)
T ss_pred ---ccCCchHHHhccccccccccccccCCCCchhhcchhhhhcc----CCCCCCCCCcccccCchhhHHHHHHHHHhhhc
Confidence 3332221111111100 0000001122222222222210 01111110000000000000000000000000
Q ss_pred CCEEEEE----EE---------------------cCCCCCeeEEEEEEEcCCCCeEEEEecCCcceEEEeCCCCCCeEEE
Q psy4951 483 TDSVTLR----YT---------------------PQNSNHFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNF 537 (1189)
Q Consensus 483 ~~sv~vs----W~---------------------p~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~v 537 (1189)
.+.+.+. |. |...+.-.-|.++.-.. ...+.+..++.+++|..++.|.+
T Consensus 724 ~n~i~vpr~~~~krk~l~~~~n~t~~~~~~~~~~p~t~~~t~p~ei~e~~p------~~~n~n~~~~vi~~Lrh~tlY~i 797 (1025)
T KOG4258|consen 724 HNAIFVPRRPDRKRKSLDDVENCTRLAPTRKAEEPTTPPTTAPTEIEEPKP------RLENGNKESYVISGLRHFTLYRI 797 (1025)
T ss_pred cceeeecccCcccccccccccceeeccccccccCCCCCCCCCCccccccCc------ccccccchhhhhhccccchhhhh
Confidence 1111111 11 11100011122211111 01135667899999999999999
Q ss_pred EEEEEeCCcC----CCcEEEeeccCCC-----CCcceEEEEE-eCcEEEEEeeCCC---CCCceEEEEEEcCCCeE-EE-
Q psy4951 538 TVWTVADGVL----STPIQRHDRLYPE-----PITRINATEI-TDTSVSLTWDSPR---GEYNAFEVQYLNTEGFL-IQ- 602 (1189)
Q Consensus 538 ~V~a~~~~~~----S~~~~~~~~t~p~-----~P~~l~v~~v-~~~sv~l~W~~p~---g~i~~Y~V~~~~~~~~~-~~- 602 (1189)
.++|.+.... |....+..+|.|. -|.-+...-. ..+++.|+|.+|. |-|..|.|.|+...... +.
T Consensus 798 ~l~aCnh~~~~~~cS~a~~v~~RT~~~~~aD~i~g~v~we~~~~~~~v~l~w~EP~~pNGli~~Y~Vk~r~~~~et~v~c 877 (1025)
T KOG4258|consen 798 DLQACNHATPKCGCSHAAFVFARTMPTMGADDIPGPVTWECHIEMNSVILRWLEPKEPNGLILNYEVKYRRNGDETHVEC 877 (1025)
T ss_pred hHhhhcccccccccchhhhhhhccccccccccCCCceeEecccCcceEEEecCCCCCCCccEEEEEEEEeeccCcchhhh
Confidence 9999987443 5555555566552 1332333222 6889999999985 77899999998654422 21
Q ss_pred ----eeccccEEEEcCCCCCCEEEEEEEEEeCCC
Q psy4951 603 ----NLTLHTSIVIGDLKPHRNYTFTVIVRSGTE 632 (1189)
Q Consensus 603 ----~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~g 632 (1189)
.......+.+.+|.|| .|.++|+|..-.|
T Consensus 878 vsR~~~~k~~gv~l~~l~~G-~y~~~vratSlaG 910 (1025)
T KOG4258|consen 878 VSRMDYAKAGGVYLKRLNPG-NYSVRVRATSLAG 910 (1025)
T ss_pred hhhhhhhhcCceEEEecCCC-cEEEEEEEEeecc
Confidence 2245667889999998 7999999998665
No 27
>KOG4258|consensus
Probab=98.98 E-value=8.3e-09 Score=119.82 Aligned_cols=270 Identities=16% Similarity=0.184 Sum_probs=168.2
Q ss_pred eEEEeeccCCCEEEEEEE---cCCCCCeeEEEEEEEcCCC---------------CeEEEEecC--------CcceEEEe
Q psy4951 474 VLVVNNQQSTDSVTLRYT---PQNSNHFDFYRFTLSEPDI---------------PVIEKAAND--------TDRKVTFN 527 (1189)
Q Consensus 474 ~~v~~~~~t~~sv~vsW~---p~~~g~i~~Y~V~~~~~~~---------------~~~~~~~~~--------~~~~~~l~ 527 (1189)
+++.....+.+++.|+|. |++-....+|.+.|+.... .|....+.. ..--+.+.
T Consensus 492 l~~~~~~~~~dsi~lrW~~~~~~d~r~llg~~~~yKEaP~qNvT~~dg~~aCg~~~W~~~~v~~~~~~p~~~~~~~~~l~ 571 (1025)
T KOG4258|consen 492 LQFSSTVTSADSILLRWERYQPPDMRDLLGFLLHYKEAPFQNVTEEDGRDACGSNSWNVVDVDPPDLIPNDGTHPGFLLD 571 (1025)
T ss_pred eeeeeEEeecceeEEEecccCCcchhhhheeeEeeccCCccccceecCccccccCcceEEeccCCcCCCccccccceehh
Confidence 444444458899999999 3433457799999875421 122222211 12257899
Q ss_pred CCCCCCeEEEEEEEEeC-------CcCCCcEEEee-ccCCCCCcceEEEEEeCcEEEEEeeCCC---CCCceEEEEEEcC
Q psy4951 528 NLTPGKLYNFTVWTVAD-------GVLSTPIQRHD-RLYPEPITRINATEITDTSVSLTWDSPR---GEYNAFEVQYLNT 596 (1189)
Q Consensus 528 ~L~p~t~Y~v~V~a~~~-------~~~S~~~~~~~-~t~p~~P~~l~v~~v~~~sv~l~W~~p~---g~i~~Y~V~~~~~ 596 (1189)
+|+|.|.|-+-|++... .+.|+-..+.+ ...|.||..+-...-+++.+.|+|++|. |.++.|.|.|...
T Consensus 572 ~LkP~TqYAvfVkT~t~t~~~~~~~A~S~I~YvqT~~~~PspPl~~ls~snsSsqi~l~W~pP~~pNG~lt~Ylv~wer~ 651 (1025)
T KOG4258|consen 572 GLKPWTQYAVFVKTLTVTEAHEAYEAKSKIGYVQTLPDIPSPPLDVLSKSNSSSQILLKWKPPSQPNGNLTHYLVVWERQ 651 (1025)
T ss_pred cCCccceeEEEEeeeehhhhccccccccceEEEEecCCCCCCcchhhhccCcchheeEEecCCCCCCCceeEEEEEEEec
Confidence 99999999999999742 13344333333 4567888887777767889999999984 8899999988542
Q ss_pred CC------------------------------e-------------------------------------------EEE-
Q psy4951 597 EG------------------------------F-------------------------------------------LIQ- 602 (1189)
Q Consensus 597 ~~------------------------------~-------------------------------------------~~~- 602 (1189)
.. . .+.
T Consensus 652 ~~~~yl~~~nYC~~~~k~p~~~~~p~~~~ed~d~~~e~e~~~~~Cc~c~~~~~~~~~e~eea~~~~~FEd~L~n~i~vpr 731 (1025)
T KOG4258|consen 652 AEDGYLEQRNYCHKGLKLPIRADLPSFDSEDMDPLLEMEGHTGPCCSCPPTESYPQYEDEEASEQKTFEDFLHNAIFVPR 731 (1025)
T ss_pred cCCchHHHhccccccccccccccCCCCchhhcchhhhhccCCCCCCCCCcccccCchhhHHHHHHHHHhhhccceeeecc
Confidence 11 0 000
Q ss_pred -------------ee--------------------------------ccccEEEEcCCCCCCEEEEEEEEEeCCCcceee
Q psy4951 603 -------------NL--------------------------------TLHTSIVIGDLKPHRNYTFTVIVRSGTESSVLR 637 (1189)
Q Consensus 603 -------------~~--------------------------------~~~~~~~l~~L~p~t~Y~~~V~A~~~~g~~~~~ 637 (1189)
+. ...+++.+.+|..+|.|.+.+.|+|..+-...
T Consensus 732 ~~~~krk~l~~~~n~t~~~~~~~~~~p~t~~~t~p~ei~e~~p~~~n~n~~~~vi~~Lrh~tlY~i~l~aCnh~~~~~~- 810 (1025)
T KOG4258|consen 732 RPDRKRKSLDDVENCTRLAPTRKAEEPTTPPTTAPTEIEEPKPRLENGNKESYVISGLRHFTLYRIDLQACNHATPKCG- 810 (1025)
T ss_pred cCcccccccccccceeeccccccccCCCCCCCCCCccccccCcccccccchhhhhhccccchhhhhhHhhhcccccccc-
Confidence 00 00123568899999999999999997762110
Q ss_pred eccceeEEEEeccCCC-CCcccccccccceeecccccceeee-ecccceEEEEecCCCCCCCCcceEEEEEEeccCcccc
Q psy4951 638 RSLPVSAIFQTHESLP-GKMDRTIVDTWHFVRFFQAEKFHPI-DVQPGDITFEWSLPGSEQNGVIRKFTISYAQEAACNH 715 (1189)
Q Consensus 638 ~s~~~s~~~~T~~~~P-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~tsv~l~W~~P~~~~ng~i~~Y~i~y~~~~~~~~ 715 (1189)
.|....+..+|.+..- ..+. ..+... ..+.+++.|+|.+|. ++||.|.+|.|.|........
T Consensus 811 cS~a~~v~~RT~~~~~aD~i~---------------g~v~we~~~~~~~v~l~w~EP~-~pNGli~~Y~Vk~r~~~~et~ 874 (1025)
T KOG4258|consen 811 CSHAAFVFARTMPTMGADDIP---------------GPVTWECHIEMNSVILRWLEPK-EPNGLILNYEVKYRRNGDETH 874 (1025)
T ss_pred cchhhhhhhccccccccccCC---------------CceeEecccCcceEEEecCCCC-CCCccEEEEEEEEeeccCcch
Confidence 1222223334443211 1111 011122 237789999999998 679999999999975443311
Q ss_pred eeeeeeeeecCcceeeEEeC-CCCCCcccceEEEEEEEEEecCCCCccccceee
Q psy4951 716 NQRLHAKFQLPRVNSKKLKG-WPGTLRTDWRSYIYKLQAELGLHMEPETIWKQK 768 (1189)
Q Consensus 716 ~~~~~~~~~~~~~~~~~i~~-~pg~~~~~~t~Y~~~V~A~~~~G~g~~s~~~~~ 768 (1189)
..-+...-- .......+.+ .|| .|.++|+|..-+|.|++...+.+
T Consensus 875 v~cvsR~~~-~k~~gv~l~~l~~G-------~y~~~vratSlaGng~~t~~~~~ 920 (1025)
T KOG4258|consen 875 VECVSRMDY-AKAGGVYLKRLNPG-------NYSVRVRATSLAGNGSWTESVIF 920 (1025)
T ss_pred hhhhhhhhh-hhcCceEEEecCCC-------cEEEEEEEEeeccCCCCcCCcce
Confidence 110000011 2334467888 787 99999999999999987655543
No 28
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=98.90 E-value=7e-09 Score=92.30 Aligned_cols=80 Identities=26% Similarity=0.520 Sum_probs=70.0
Q ss_pred CCCcceEEEeeeCCeEEEEeeCCC--CCcccEEEEEEEeCCCcc-eEEeccCCCccEEEecCCCCCCeEEEEEEEEEcCc
Q psy4951 280 KPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKT-WVRLPNVGTSLEAEVTDMVPGEKCMIQVNSVSYSV 356 (1189)
Q Consensus 280 ~pP~~l~v~~~t~~sv~vsW~~p~--~g~i~~Y~V~~~~~~~~~-~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g 356 (1189)
+||.+|++..++.+++.|+|++|. ++.+.+|.|+|...++.. +.........+.+.+.+|.|++.|.|+|+|++..|
T Consensus 1 s~P~~l~v~~~~~~sv~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~v~a~~~~g 80 (85)
T PF00041_consen 1 SAPENLSVSNISPTSVTVSWKPPSSGNGPITGYRVEYRSVNSTSDWQEVTVPGNETSYTITGLQPGTTYEFRVRAVNSDG 80 (85)
T ss_dssp SSSEEEEEEEECSSEEEEEEEESSSTSSSESEEEEEEEETTSSSEEEEEEEETTSSEEEEESCCTTSEEEEEEEEEETTE
T ss_pred CcCcCeEEEECCCCEEEEEEECCCCCCCCeeEEEEEEEecccceeeeeeeeeeeeeeeeeccCCCCCEEEEEEEEEeCCc
Confidence 478999999999999999999995 778999999999886654 66666666667999999999999999999999988
Q ss_pred cCC
Q psy4951 357 ESA 359 (1189)
Q Consensus 357 ~s~ 359 (1189)
.+.
T Consensus 81 ~g~ 83 (85)
T PF00041_consen 81 EGP 83 (85)
T ss_dssp EEE
T ss_pred CcC
Confidence 765
No 29
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=98.78 E-value=2.4e-08 Score=88.77 Aligned_cols=82 Identities=21% Similarity=0.412 Sum_probs=67.8
Q ss_pred ccceeeeecccceEEEEecCCCCCCCCcceEEEEEEeccCcccceeeeeeeeecCcceeeEEeC-CCCCCcccceEEEEE
Q psy4951 672 AEKFHPIDVQPGDITFEWSLPGSEQNGVIRKFTISYAQEAACNHNQRLHAKFQLPRVNSKKLKG-WPGTLRTDWRSYIYK 750 (1189)
Q Consensus 672 ~~~l~~~~~~~tsv~l~W~~P~~~~ng~i~~Y~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~pg~~~~~~t~Y~~~ 750 (1189)
|.+|++..++.+++.|+|+.|. ..++.+.+|.|.|...+...... ...+. .....+.|.| .|+ +.|.|+
T Consensus 3 P~~l~v~~~~~~sv~v~W~~~~-~~~~~~~~y~v~~~~~~~~~~~~--~~~~~-~~~~~~~i~~L~p~------t~Y~~~ 72 (85)
T PF00041_consen 3 PENLSVSNISPTSVTVSWKPPS-SGNGPITGYRVEYRSVNSTSDWQ--EVTVP-GNETSYTITGLQPG------TTYEFR 72 (85)
T ss_dssp SEEEEEEEECSSEEEEEEEESS-STSSSESEEEEEEEETTSSSEEE--EEEEE-TTSSEEEEESCCTT------SEEEEE
T ss_pred CcCeEEEECCCCEEEEEEECCC-CCCCCeeEEEEEEEecccceeee--eeeee-eeeeeeeeccCCCC------CEEEEE
Confidence 4589999999999999999997 55799999999998766553111 22366 6777999999 999 999999
Q ss_pred EEEEecCCCCccc
Q psy4951 751 LQAELGLHMEPET 763 (1189)
Q Consensus 751 V~A~~~~G~g~~s 763 (1189)
|+|.+..|.|++|
T Consensus 73 v~a~~~~g~g~~S 85 (85)
T PF00041_consen 73 VRAVNSDGEGPPS 85 (85)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEEEeCCcCcCCC
Confidence 9999999988765
No 30
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=98.40 E-value=8.7e-05 Score=79.80 Aligned_cols=203 Identities=17% Similarity=0.202 Sum_probs=117.3
Q ss_pred eeecCccEEEEccCCCCCeEEEEEEEeeCCCC-C--------------CCCCc------eeeec--ccccEEEEEeeCC-
Q psy4951 157 QMFVDKTEYVLESLLPGRKYSINVQAVSNGME-S--------------PSFPI------IEDLR--PIEFGLNISWKSD- 212 (1189)
Q Consensus 157 ~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~g~-s--------------P~~p~------~~~~~--~~~~si~lsW~~p- 212 (1189)
...+..+.++|.+|.|++.|.|.|.+++.... + ..++. +..+. .....-..+...|
T Consensus 9 vCvg~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~g~~~f~f~vP~ 88 (300)
T PF10179_consen 9 VCVGQKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKGGFKFFSFKVPK 88 (300)
T ss_pred EEcCCCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcCceeEEEEcCCc
Confidence 34566789999999999999999999998433 3 11111 11111 1111233445533
Q ss_pred CCCCceEEEEEEEeCCCCCccc------eEEee----eccEEEEcCCCCCCeEEEEEEEEeCCccCCceeee-ccc----
Q psy4951 213 VNSRQDNFEVIYNRNDTITEDP------ITVVT----TDSKLLLENLYPGAGYSIQVFAISHGLRSEPHDYF-QAV---- 277 (1189)
Q Consensus 213 ~~~~i~~Y~V~~~~~~~~~~~~------~~~~~----~~~s~~i~~L~p~t~Y~v~V~a~~~~~~s~~~~~~-~~t---- 277 (1189)
.......-.+.+.+.++.-.-. ..... .-..+.++|+.||..|.+++.+.+.........+. .++
T Consensus 89 ~~~~~~~~~l~v~~C~G~V~v~i~r~gk~l~~~~~v~~~~~f~l~~~~~g~~Yliri~~~~~~e~~~~~kV~aast~~~~ 168 (300)
T PF10179_consen 89 RSSTHQSLWLFVQSCSGSVRVEISRNGKILLSQKNVEGLRHFRLSGVKPGERYLIRIQISNSDEGPSTFKVQAASTNPSK 168 (300)
T ss_pred CCCCCccEEEEEEeCCCeEEEEEEECCeEEeeeecccceEEEEECCCCCCCeEEEEEEccCCCCCceEEEEEEecCCccc
Confidence 1111122222233333321100 11111 22468899999999999999887743333322333 222
Q ss_pred --CCCCCcceEEEeee----CCeEEEEeeCCCCCcccEEEEEEEeCCCc----------------------ceEEe---c
Q psy4951 278 --YPKPPTNLTLEKTS----SNAVLVKWKEPVGSIFTEYSIRYRTEEDK----------------------TWVRL---P 326 (1189)
Q Consensus 278 --~p~pP~~l~v~~~t----~~sv~vsW~~p~~g~i~~Y~V~~~~~~~~----------------------~~~~~---~ 326 (1189)
-|.-|.++.+...+ -++++|.|.+..+.. ..|-|..+..... ++..+ .
T Consensus 169 ~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~~-~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~e~v~Ck~~~ 247 (300)
T PF10179_consen 169 QPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPDRS-IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKSEKVLCKYFH 247 (300)
T ss_pred CCCCCCCCCCceeEEcCCcccceEEEEEecCCCCC-ceEEEEEEEecCchhhhhhcccCccCCCCCccccceEEEEEEEc
Confidence 35568888885554 389999999866533 4787776643221 11111 1
Q ss_pred cCC-------CccEEEecCCCCCCeEEEEEEEEEcCccCCC
Q psy4951 327 NVG-------TSLEAEVTDMVPGEKCMIQVNSVSYSVESAH 360 (1189)
Q Consensus 327 ~~~-------~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~ 360 (1189)
..+ .....+|.||+||+.|.|.|.+....|.+-+
T Consensus 248 ~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~~~G~sl~ 288 (300)
T PF10179_consen 248 SPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVNGPSGQSLP 288 (300)
T ss_pred CCccccccccccceeecccCCCCcEEEEEEEEecCCCceee
Confidence 111 1135589999999999999999887776654
No 31
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=98.32 E-value=2.3e-07 Score=86.35 Aligned_cols=56 Identities=43% Similarity=0.611 Sum_probs=51.7
Q ss_pred CCCCcceEEeHHHHHHHhcCC-CCCCHHHHHHHHHhCccccccChhhhhhHHHHHHH
Q psy4951 1094 SPRRSGTLIALDRILQSINHS-DVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLA 1149 (1189)
Q Consensus 1094 ~~~rtg~fi~~~~~~~~~~~~-~~~dv~~~v~~~r~~R~~~v~~~~Qy~f~y~~~~~ 1149 (1189)
+..|||+||+++.++.++..+ ..+|+.++++++|++|++++++.+||.|||+++++
T Consensus 49 G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~r~~~~~~~~q~~~~~~~~~~ 105 (105)
T smart00404 49 GVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQRPGMVQTFEQYLFLYRALLE 105 (105)
T ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhhhhhCCcHHHHHHHHHHHhC
Confidence 444999999999999999877 79999999999999999999999999999999863
No 32
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=98.32 E-value=2.3e-07 Score=86.35 Aligned_cols=56 Identities=43% Similarity=0.611 Sum_probs=51.7
Q ss_pred CCCCcceEEeHHHHHHHhcCC-CCCCHHHHHHHHHhCccccccChhhhhhHHHHHHH
Q psy4951 1094 SPRRSGTLIALDRILQSINHS-DVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLA 1149 (1189)
Q Consensus 1094 ~~~rtg~fi~~~~~~~~~~~~-~~~dv~~~v~~~r~~R~~~v~~~~Qy~f~y~~~~~ 1149 (1189)
+..|||+||+++.++.++..+ ..+|+.++++++|++|++++++.+||.|||+++++
T Consensus 49 G~gRtg~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~r~~~~~~~~q~~~~~~~~~~ 105 (105)
T smart00012 49 GVGRTGTFVALDILLQQLESETGEVDIFQTVKELRKQRPGMVQTFEQYLFLYRALLE 105 (105)
T ss_pred CCChhhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhhhhhhCCcHHHHHHHHHHHhC
Confidence 444999999999999999877 79999999999999999999999999999999863
No 33
>PF10179 DUF2369: Uncharacterised conserved protein (DUF2369); InterPro: IPR019326 This is a proline-rich region of a group of proteins found from plants to fungi. The function is largely unknown, although the entry contains Fibronectin type-III domain-containing protein C4orf31, which promotes matrix assembly and cell adhesiveness.
Probab=98.20 E-value=0.00057 Score=73.64 Aligned_cols=211 Identities=15% Similarity=0.186 Sum_probs=113.2
Q ss_pred CCCccEEEecCCCCCCeEEEEEEEEEcCccCCCceeE-Eeec---CCCCccce------EEeecC-c-EEEEEeeCC---
Q psy4951 328 VGTSLEAEVTDMVPGEKCMIQVNSVSYSVESAHPLQI-NHTI---SPNPATYV------AALVDA-S-NVTLEFPRP--- 392 (1189)
Q Consensus 328 ~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~~~-~~~t---~p~pp~~l------~~~~~~-~-sv~lsW~~p--- 392 (1189)
.+..+.++|.+|.|++.|.|.|++++..-........ ...+ ....+..| ...+.. . .-.++.+.|
T Consensus 11 vg~~t~~t~~~L~p~t~YyfdVF~vn~~~n~ssay~gt~~~t~~~~r~~~~~Lkdg~l~~~~l~~~~g~~~f~f~vP~~~ 90 (300)
T PF10179_consen 11 VGQKTNQTLSGLKPDTTYYFDVFVVNQLTNNSSAYLGTFARTREENRSKPTRLKDGKLTQVKLKGKGGFKFFSFKVPKRS 90 (300)
T ss_pred cCCCceEEeccCCCCCeEEEEEEEEECCCCceeeeeEEEEEEccccCCCcEEcccCcEEEEEECCcCceeEEEEcCCcCC
Confidence 3445899999999999999999999864333322221 1112 12222222 122222 2 233455533
Q ss_pred --CcceeE--------EEEEEEeeccCCCCcceEeeeecCCCCCCCCceEEEecCCCCCCeEEEEEEEEeCCccCcceEE
Q psy4951 393 --EGRIEY--------YLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGVTSL 462 (1189)
Q Consensus 393 --~g~i~~--------Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~~~s~~~~~ 462 (1189)
+..+.. -.|+.. ..+...... ..-..-..+.+.|+.||..|.+++.+.+.........+
T Consensus 91 ~~~~~~~l~v~~C~G~V~v~i~-----r~gk~l~~~------~~v~~~~~f~l~~~~~g~~Yliri~~~~~~e~~~~~kV 159 (300)
T PF10179_consen 91 STHQSLWLFVQSCSGSVRVEIS-----RNGKILLSQ------KNVEGLRHFRLSGVKPGERYLIRIQISNSDEGPSTFKV 159 (300)
T ss_pred CCCccEEEEEEeCCCeEEEEEE-----ECCeEEeee------ecccceEEEEECCCCCCCeEEEEEEccCCCCCceEEEE
Confidence 111111 112221 001001001 00124568899999999999999987764332222222
Q ss_pred E-EEc------CCCCccceEEEeec--cCCCEEEEEEEcCCCCCeeEEEEEEEcCCCC----------------------
Q psy4951 463 S-ART------MPLIESEVLVVNNQ--QSTDSVTLRYTPQNSNHFDFYRFTLSEPDIP---------------------- 511 (1189)
Q Consensus 463 ~-~~t------~P~~p~~~~v~~~~--~t~~sv~vsW~p~~~g~i~~Y~V~~~~~~~~---------------------- 511 (1189)
. +.+ .|..|.+..+.... .+=++++|.|.+..... ..|=|+.+.....
T Consensus 160 ~aast~~~~~~~P~LP~d~~Ik~f~~lrtC~SvTIAW~~s~d~~-~kYCvy~~~~~~~~~~~~~~~~~n~C~~~~sr~k~ 238 (300)
T PF10179_consen 160 QAASTNPSKQPYPQLPDDTSIKEFNKLRTCNSVTIAWLGSPDRS-IKYCVYRREEHSNYQERSVSRMPNQCLGPESRKKS 238 (300)
T ss_pred EEecCCcccCCCCCCCCCCceeEEcCCcccceEEEEEecCCCCC-ceEEEEEEEecCchhhhhhcccCccCCCCCccccc
Confidence 2 222 45566666665443 35689999999654333 4666655432111
Q ss_pred eEEEE---e--------cCCcceEEEeCCCCCCeEEEEEEEEeCCcCCCc
Q psy4951 512 VIEKA---A--------NDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTP 550 (1189)
Q Consensus 512 ~~~~~---~--------~~~~~~~~l~~L~p~t~Y~v~V~a~~~~~~S~~ 550 (1189)
..... . .......+|.||+||+.|.|.|.+....|.+-+
T Consensus 239 e~v~Ck~~~~~n~~~~~~~~v~tetI~~L~PG~~Yl~dV~~~~~~G~sl~ 288 (300)
T PF10179_consen 239 EKVLCKYFHSPNSSEDPQRAVTTETIKGLKPGTTYLFDVYVNGPSGQSLP 288 (300)
T ss_pred eEEEEEEEcCCccccccccccceeecccCCCCcEEEEEEEEecCCCceee
Confidence 00111 1 111235589999999999999999876555433
No 34
>KOG4802|consensus
Probab=98.06 E-value=4.5e-05 Score=82.18 Aligned_cols=163 Identities=16% Similarity=0.238 Sum_probs=103.0
Q ss_pred eeeecccccEEEEEeeCCCCCCceEEEEEEE------------eCCCCCccceEEeeeccEEEEcCCCCCCeEEEEEEEE
Q psy4951 195 IEDLRPIEFGLNISWKSDVNSRQDNFEVIYN------------RNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAI 262 (1189)
Q Consensus 195 ~~~~~~~~~si~lsW~~p~~~~i~~Y~V~~~------------~~~~~~~~~~~~~~~~~s~~i~~L~p~t~Y~v~V~a~ 262 (1189)
+.-.....+++.+.|..-.+. .-|.+.+. +.+...+..+........+.+.++.||.-|+|+|.|+
T Consensus 152 ~~y~r~~~g~~av~w~~~~~~--~v~~~~~~vr~~w~~g~hase~~~thwQtv~~t~~e~~~~~t~~rPgRwyefrvaav 229 (516)
T KOG4802|consen 152 ILYFRRSRGSHAVDWKIESSL--LVYYVHVEVRSHWGRGFHASELGPTHWQTVEKTMEENTYIFTDMRPGRWYEFRVAAV 229 (516)
T ss_pred hhhhhhccCceeeeeeecccc--ceeeeehhhhhhhcccccccccccccceeeeecCCCceeeeeecCcceeEEEEEeee
Confidence 344456778899999975322 22333221 1122333344445555678899999999999999999
Q ss_pred eC---CccCCcee---e-ecccCCCCCcceEEEeeeCC---eEEEEeeCCC-CCcccEEEEEEEeCCCc-ce---EEecc
Q psy4951 263 SH---GLRSEPHD---Y-FQAVYPKPPTNLTLEKTSSN---AVLVKWKEPV-GSIFTEYSIRYRTEEDK-TW---VRLPN 327 (1189)
Q Consensus 263 ~~---~~~s~~~~---~-~~~t~p~pP~~l~v~~~t~~---sv~vsW~~p~-~g~i~~Y~V~~~~~~~~-~~---~~~~~ 327 (1189)
|. -+-++|+. . ....+|.+|.++++..+..+ ...|-|.|+. +-+|.+|+|.|...-.. .. ..-..
T Consensus 230 n~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~~sdlPv~~Yki~Ws~~v~s~k~~m~tks~~ 309 (516)
T KOG4802|consen 230 NAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPSKSDLPVEKYKITWSLYVNSAKASMITKSSY 309 (516)
T ss_pred ecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCCCCCCcceeeEEEeehhhhhhhhhcccccce
Confidence 93 23344433 1 22345777889988666432 3668888887 66899999999764211 00 00000
Q ss_pred CCCccEEEecCCCCCCeEEEEEEEEEcCccCC
Q psy4951 328 VGTSLEAEVTDMVPGEKCMIQVNSVSYSVESA 359 (1189)
Q Consensus 328 ~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~ 359 (1189)
.-+...+.|++|.|+..|.+.|.|+...|...
T Consensus 310 ~k~thq~si~~L~Pns~Y~VevqAi~y~g~~r 341 (516)
T KOG4802|consen 310 VKDTHQFSIKELLPNSSYYVEVQAISYLGSRR 341 (516)
T ss_pred eeccchhhhhhcCCCCeEEEEEEEEEeccCcc
Confidence 11123455999999999999999988766543
No 35
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=98.04 E-value=4.3e-05 Score=68.35 Aligned_cols=82 Identities=28% Similarity=0.537 Sum_probs=65.8
Q ss_pred CCCCcceEEEeeeCCeEEEEeeCCCC--CcccEEEEEEEeCCCcceEEeccC-CCccEEEecCCCCCCeEEEEEEEEEcC
Q psy4951 279 PKPPTNLTLEKTSSNAVLVKWKEPVG--SIFTEYSIRYRTEEDKTWVRLPNV-GTSLEAEVTDMVPGEKCMIQVNSVSYS 355 (1189)
Q Consensus 279 p~pP~~l~v~~~t~~sv~vsW~~p~~--g~i~~Y~V~~~~~~~~~~~~~~~~-~~~~~~~i~~L~p~t~Y~~~V~A~~~~ 355 (1189)
|.+|.++.+......++.|+|.++.. +.+.+|.|.+...+...|..+... .....+.+.+|.|++.|.|+|.|....
T Consensus 1 p~~p~~~~~~~~~~~~~~v~W~~~~~~~~~~~~y~v~~~~~~~~~~~~~~~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~ 80 (93)
T cd00063 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGG 80 (93)
T ss_pred CcCCCCcEEEEecCCEEEEEECCCCCCCCcceeEEEEEeeCCCCCCEEeeccCCcccEEEEccccCCCEEEEEEEEECCC
Confidence 45788888888888999999999874 468899999998754556555543 345889999999999999999999877
Q ss_pred ccCCC
Q psy4951 356 VESAH 360 (1189)
Q Consensus 356 g~s~~ 360 (1189)
+.+..
T Consensus 81 ~~~~~ 85 (93)
T cd00063 81 GESPP 85 (93)
T ss_pred ccCCC
Confidence 76653
No 36
>KOG4802|consensus
Probab=97.81 E-value=0.00015 Score=78.25 Aligned_cols=166 Identities=17% Similarity=0.233 Sum_probs=100.4
Q ss_pred CCCCcceE-EEeeeCCeEEEEeeCCCCCcccEEEEEEE------------eCCCcceEEeccCCCccEEEecCCCCCCeE
Q psy4951 279 PKPPTNLT-LEKTSSNAVLVKWKEPVGSIFTEYSIRYR------------TEEDKTWVRLPNVGTSLEAEVTDMVPGEKC 345 (1189)
Q Consensus 279 p~pP~~l~-v~~~t~~sv~vsW~~p~~g~i~~Y~V~~~------------~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y 345 (1189)
+.+|.+.. ......+++.+.|..-.+ +.-|.+.+. ..+...|+.+........+.++++.||..|
T Consensus 145 ~l~Pr~k~~y~r~~~g~~av~w~~~~~--~~v~~~~~~vr~~w~~g~hase~~~thwQtv~~t~~e~~~~~t~~rPgRwy 222 (516)
T KOG4802|consen 145 QLPPRPKILYFRRSRGSHAVDWKIESS--LLVYYVHVEVRSHWGRGFHASELGPTHWQTVEKTMEENTYIFTDMRPGRWY 222 (516)
T ss_pred CCCCcchhhhhhhccCceeeeeeeccc--cceeeeehhhhhhhcccccccccccccceeeeecCCCceeeeeecCcceeE
Confidence 34454433 345567789999987554 222332221 113346777777666568999999999999
Q ss_pred EEEEEEEEcCcc---CCCceeE---EeecCCCCccce-EE--eecC-cEEEEEeeCC--CcceeEEEEEEEeeccCCCC-
Q psy4951 346 MIQVNSVSYSVE---SAHPLQI---NHTISPNPATYV-AA--LVDA-SNVTLEFPRP--EGRIEYYLVTWRGIGPEATS- 412 (1189)
Q Consensus 346 ~~~V~A~~~~g~---s~~~~~~---~~~t~p~pp~~l-~~--~~~~-~sv~lsW~~p--~g~i~~Y~V~~~~~~~~~~~- 412 (1189)
.|+|.|++..|. +.++... ....+|.+|.++ .. ..+. -...|.|.|+ +-+|..|+|.|.. ....
T Consensus 223 efrvaavn~~G~rGFs~PSkpf~ssk~pkaPp~P~dl~l~~v~~dG~~~~~v~w~P~~sdlPv~~Yki~Ws~---~v~s~ 299 (516)
T KOG4802|consen 223 EFRVAAVNAYGFRGFSEPSKPFPSSKNPKAPPSPNDLKLIGVQFDGRYMLKVVWCPSKSDLPVEKYKITWSL---YVNSA 299 (516)
T ss_pred EEEEeeeecccccccCCCCCCCCCCCCCCCCcCcccceeeeeeecceEEEEEEeCCCCCCCcceeeEEEeeh---hhhhh
Confidence 999999976543 3332222 122345566666 22 2222 3467888876 5578999999982 2211
Q ss_pred --cceEeeeecCCCCCCCCceEEEecCCCCCCeEEEEEEEEeCCc
Q psy4951 413 --TELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNL 455 (1189)
Q Consensus 413 --~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~~ 455 (1189)
........- .+.+ ...|++|.|+..|.|.|.|...-|
T Consensus 300 k~~m~tks~~~----k~th--q~si~~L~Pns~Y~VevqAi~y~g 338 (516)
T KOG4802|consen 300 KASMITKSSYV----KDTH--QFSIKELLPNSSYYVEVQAISYLG 338 (516)
T ss_pred hhhccccccee----eccc--hhhhhhcCCCCeEEEEEEEEEecc
Confidence 100000110 1112 334999999999999999997543
No 37
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.76 E-value=0.00019 Score=62.25 Aligned_cols=77 Identities=26% Similarity=0.491 Sum_probs=55.9
Q ss_pred CCCcceEEEeeeCCeEEEEeeCCCCCcccEEEEEEEeCCCc---ceEEeccCCCccEEEecCCCCCCeEEEEEEEEEcCc
Q psy4951 280 KPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDK---TWVRLPNVGTSLEAEVTDMVPGEKCMIQVNSVSYSV 356 (1189)
Q Consensus 280 ~pP~~l~v~~~t~~sv~vsW~~p~~g~i~~Y~V~~~~~~~~---~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g 356 (1189)
.+|.++.+......++.|+|++|......+|.+.|...... .+...........+.+.+|.|++.|.|+|+|.+..|
T Consensus 2 ~~p~~~~~~~~~~~~~~v~W~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~~Y~v~v~a~~~~g 81 (83)
T smart00060 2 SPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSSWKEVNVTPSSTSYTLTGLKPGTEYEFRVRAVNGAG 81 (83)
T ss_pred CCCCcEEEEEEeCCEEEEEECCCCCCCCCccEEEEEEEEecCCCccEEEEecCCccEEEEeCcCCCCEEEEEEEEEcccC
Confidence 45666888887888999999987632227888888765322 244433333347899999999999999999988644
No 38
>cd00063 FN3 Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all animal proteins contain the FN3 repeat; including extracellular and intracellular proteins, membrane spanning cytokine receptors, growth hormone receptors, tyrosine phosphatase receptors, and adhesion molecules. FN3-like domains are also found in bacterial glycosyl hydrolases.
Probab=97.74 E-value=0.00017 Score=64.42 Aligned_cols=82 Identities=28% Similarity=0.443 Sum_probs=58.6
Q ss_pred CCCccceEEEecCCCCeEEEEeecCCC--CCcceEEEEeeehhhHhHhhhhhhccccccCCCCCceeeeeecccCCCcee
Q psy4951 80 PLPVLDLTAVMDDKTGDLFISWKPDNA--SYQDMYKISIKSILLEEEHQKQFLMGFLGDCDNGSKISYVEIETLNGDSNQ 157 (1189)
Q Consensus 80 p~~P~~l~~~~~~s~~sv~l~W~~p~~--~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (1189)
|.+|.++++.. .+.+++.|+|+++.. +.+.+|.|. |.......+....
T Consensus 1 p~~p~~~~~~~-~~~~~~~v~W~~~~~~~~~~~~y~v~-----------------------------~~~~~~~~~~~~~ 50 (93)
T cd00063 1 PSPPTNLRVTD-VTSTSVTLSWTPPEDDGGPITGYVVE-----------------------------YREKGSGDWKEVE 50 (93)
T ss_pred CcCCCCcEEEE-ecCCEEEEEECCCCCCCCcceeEEEE-----------------------------EeeCCCCCCEEee
Confidence 56788888887 778999999998854 356789993 3332211111111
Q ss_pred ee-cCccEEEEccCCCCCeEEEEEEEeeCCCCCCC
Q psy4951 158 MF-VDKTEYVLESLLPGRKYSINVQAVSNGMESPS 191 (1189)
Q Consensus 158 ~~-~~~~~~~l~~L~p~t~Y~~~V~A~~~~g~sP~ 191 (1189)
.. .....+.+.+|.|++.|.|+|+|.+..+.++.
T Consensus 51 ~~~~~~~~~~i~~l~p~~~Y~~~v~a~~~~~~~~~ 85 (93)
T cd00063 51 VTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPP 85 (93)
T ss_pred ccCCcccEEEEccccCCCEEEEEEEEECCCccCCC
Confidence 11 36678999999999999999999998777643
No 39
>smart00060 FN3 Fibronectin type 3 domain. One of three types of internal repeat within the plasma protein, fibronectin. The tenth fibronectin type III repeat contains a RGD cell recognition sequence in a flexible loop between 2 strands. Type III modules are present in both extracellular and intracellular proteins.
Probab=97.71 E-value=0.00023 Score=61.66 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=52.3
Q ss_pred CCccceEEEecCCCCeEEEEeecCCCCCcceEEEEeeehhhHhHhhhhhhccccccCCCCCceeeeeeccc---CCCcee
Q psy4951 81 LPVLDLTAVMDDKTGDLFISWKPDNASYQDMYKISIKSILLEEEHQKQFLMGFLGDCDNGSKISYVEIETL---NGDSNQ 157 (1189)
Q Consensus 81 ~~P~~l~~~~~~s~~sv~l~W~~p~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 157 (1189)
.+|.++.+.. ..++++.|+|+++......+|.+.|. ..... .+....
T Consensus 2 ~~p~~~~~~~-~~~~~~~v~W~~~~~~~~~~y~~~~~-----------------------------~~~~~~~~~~~~~~ 51 (83)
T smart00060 2 SPPSNLRVTD-VTSTSVTLSWEPPPDDGITGYIVGYR-----------------------------VEYREEGSSWKEVN 51 (83)
T ss_pred CCCCcEEEEE-EeCCEEEEEECCCCCCCCCccEEEEE-----------------------------EEEecCCCccEEEE
Confidence 4566677776 67779999999775532268888433 22111 111122
Q ss_pred eecCccEEEEccCCCCCeEEEEEEEeeCCCC
Q psy4951 158 MFVDKTEYVLESLLPGRKYSINVQAVSNGME 188 (1189)
Q Consensus 158 ~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~g~ 188 (1189)
.......+.+.+|.|++.|.|+|.|.+..|.
T Consensus 52 ~~~~~~~~~i~~L~~~~~Y~v~v~a~~~~g~ 82 (83)
T smart00060 52 VTPSSTSYTLTGLKPGTEYEFRVRAVNGAGE 82 (83)
T ss_pred ecCCccEEEEeCcCCCCEEEEEEEEEcccCC
Confidence 2222578999999999999999999987554
No 40
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=97.56 E-value=0.0068 Score=65.07 Aligned_cols=315 Identities=15% Similarity=0.102 Sum_probs=170.4
Q ss_pred CceEEEEEEEeCCCCCcc-ceEEeeeccEEEEcCCCCCCeEEEEEEEEeCCccCC---ceeeecccCCCCCcceEEEeee
Q psy4951 216 RQDNFEVIYNRNDTITED-PITVVTTDSKLLLENLYPGAGYSIQVFAISHGLRSE---PHDYFQAVYPKPPTNLTLEKTS 291 (1189)
Q Consensus 216 ~i~~Y~V~~~~~~~~~~~-~~~~~~~~~s~~i~~L~p~t~Y~v~V~a~~~~~~s~---~~~~~~~t~p~pP~~l~v~~~t 291 (1189)
.+.+|.+.....+..... ...-...++.+..++|.+++.|.+..-..+....+. ....... ...+.......-..
T Consensus 4 ~~~~~~~~~t~~~~~~~~i~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~-~i~~~~~~~~~~~~ 82 (343)
T COG3401 4 DIDGFVLYRTKKDLKLKRIGTIKNKYQTHYYDEGLEGEESYPYQEGTTKVDKISYDSERILVKTS-FIERVRSVFASLER 82 (343)
T ss_pred cceeEEEEEEcccchhhhhhccccchhhhhhhccccccCcceeeecccccceeeecCcceEEEee-eccccccccchhcC
Confidence 467787766554433111 112244567888999999999998876666332221 1111111 12222222222234
Q ss_pred CCeEEEEeeCCCCCcccEEEEEEEeCCCcceEEecc--CCCccEEEecCCCCCCeEEEEEEEEEcCccCCCceeEE-eec
Q psy4951 292 SNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPN--VGTSLEAEVTDMVPGEKCMIQVNSVSYSVESAHPLQIN-HTI 368 (1189)
Q Consensus 292 ~~sv~vsW~~p~~g~i~~Y~V~~~~~~~~~~~~~~~--~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~~~~-~~t 368 (1189)
+..+.+-|.+-.+-.+..|.|+....++. ...... .+-.-.+.-++|.++..|+..|.+....+.-.-+.... .+.
T Consensus 83 ~~~~~~~w~~~~d~~~~~Y~i~~~~gD~~-f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfsf~gVE~~~ 161 (343)
T COG3401 83 PKSVKVFWSPHPDVSVGKYIIQRQNGDGK-FLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFSFTGVEATP 161 (343)
T ss_pred cceeeecccccCCCCCCeEEEEEecCchh-hhhhhHHHhccchhheecccccccceeeeEEeecccccceeeeeeeeccc
Confidence 45699999998877788999998876554 322211 11123445569999999999999876554433333333 333
Q ss_pred CCCCccceEE---eecCcEEEEEeeCCCcceeEEEEEEEeeccCCCCcceEeeeecCCCCCCCCceEEEecCCCCCCeEE
Q psy4951 369 SPNPATYVAA---LVDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQ 445 (1189)
Q Consensus 369 ~p~pp~~l~~---~~~~~sv~lsW~~p~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~ 445 (1189)
...|+..... ....+.+.|+|+.+.. +++|+|+-. ............... +.......+| |..|.
T Consensus 162 ~~~P~ei~~~~~~~d~~~~i~ls~dg~~~-~~yy~IY~~---~~g~e~~~~ia~t~~------n~y~d~~egl--ga~~~ 229 (343)
T COG3401 162 KAEPKEITNVRVSFDLGNNIELSEDGSEA-EDYYRIYAS---DSGNEEYGFIAQTTE------NSYYDVKEGL--GAVEY 229 (343)
T ss_pred ccCCceeeeeeeecCCCCcceeeccCccc-cceEEEecc---CCccccccceeeccc------cchhhhhhcc--CceeE
Confidence 3334443322 2345889999997643 348888766 222222111111111 1122233344 77777
Q ss_pred EEEEEEe-CCccCcceE-EE---EEcCCCCccceEEEeeccCCCEEEEEEEcCCCCCeeEEEEEEEcCCCCeEEEEecCC
Q psy4951 446 FTIRTVS-YNLESGVTS-LS---ARTMPLIESEVLVVNNQQSTDSVTLRYTPQNSNHFDFYRFTLSEPDIPVIEKAANDT 520 (1189)
Q Consensus 446 v~V~a~~-~~~~s~~~~-~~---~~t~P~~p~~~~v~~~~~t~~sv~vsW~p~~~g~i~~Y~V~~~~~~~~~~~~~~~~~ 520 (1189)
..|.++. ++..+.... .+ +-..|..|..+.-. .....+.|.|.+.+......|.+..-..+... ......
T Consensus 230 y~VTtVd~~~~es~lp~~~t~~~~~g~~e~pt~~g~t---~~~s~i~V~~E~~~~~~av~ytvyr~~~g~~~--~~f~it 304 (343)
T COG3401 230 YKVTTVDNTGFESDLPNEPTVGETGGRYEVPTIPGET---TEASFIGVAAEQNQLRQAVTYTVYRVEDGTPT--KFFTIT 304 (343)
T ss_pred EEEEEEcCCcceeccCCccccccccCCcccccCCCce---eeeeeeeEEecccccceeeEEeeeeccCCCcc--eeeeee
Confidence 7888885 445444322 11 11222222211111 13445567887543223445555443332222 223344
Q ss_pred cceEEEeCCCCCCeEEEEEEEEeCCcCCC
Q psy4951 521 DRKVTFNNLTPGKLYNFTVWTVADGVLST 549 (1189)
Q Consensus 521 ~~~~~l~~L~p~t~Y~v~V~a~~~~~~S~ 549 (1189)
.+......+.++..|.+.|.+.+.++.+.
T Consensus 305 ~~d~~d~~~ltg~~~~y~v~~v~~~gls~ 333 (343)
T COG3401 305 ETDGQDNDMLTGVEYRYEVVAVDKAGLSS 333 (343)
T ss_pred eccccchhhccccceeEEEEEeccccccc
Confidence 56677788889999999999998766554
No 41
>COG3401 Fibronectin type 3 domain-containing protein [General function prediction only]
Probab=97.52 E-value=0.0063 Score=65.29 Aligned_cols=282 Identities=13% Similarity=0.034 Sum_probs=160.6
Q ss_pred CccEEEEccCCCCCeEEEEEEEeeCCCCC-CCCCc------------eeeecccccEEEEEeeCCCCCCceEEEEEEEeC
Q psy4951 161 DKTEYVLESLLPGRKYSINVQAVSNGMES-PSFPI------------IEDLRPIEFGLNISWKSDVNSRQDNFEVIYNRN 227 (1189)
Q Consensus 161 ~~~~~~l~~L~p~t~Y~~~V~A~~~~g~s-P~~p~------------~~~~~~~~~si~lsW~~p~~~~i~~Y~V~~~~~ 227 (1189)
-++.+..++|.+++.|.+..-..+..-.+ -+.+. +...-....++.+-|.+.++-....|.|+....
T Consensus 29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~i~~~~~~~~~~~~~~~~~~~w~~~~d~~~~~Y~i~~~~g 108 (343)
T COG3401 29 YQTHYYDEGLEGEESYPYQEGTTKVDKISYDSERILVKTSFIERVRSVFASLERPKSVKVFWSPHPDVSVGKYIIQRQNG 108 (343)
T ss_pred hhhhhhhccccccCcceeeecccccceeeecCcceEEEeeeccccccccchhcCcceeeecccccCCCCCCeEEEEEecC
Confidence 45788899999999999888766655222 00000 011112356799999998888888999998776
Q ss_pred CCCCcc-ceEEeeeccEEEEcCCCCCCeEEEEEEEEeC-CccCCceeeecccCCCCC---cceEEEeeeCCeEEEEeeCC
Q psy4951 228 DTITED-PITVVTTDSKLLLENLYPGAGYSIQVFAISH-GLRSEPHDYFQAVYPKPP---TNLTLEKTSSNAVLVKWKEP 302 (1189)
Q Consensus 228 ~~~~~~-~~~~~~~~~s~~i~~L~p~t~Y~v~V~a~~~-~~~s~~~~~~~~t~p~pP---~~l~v~~~t~~sv~vsW~~p 302 (1189)
+....+ ....+.-.-.+.-++|.++..|...|.+.+. +..+.++.....++-..| .++++.....+.+.|+|+.+
T Consensus 109 D~~f~r~~~~~n~l~~~~i~s~~~~~~~~~~~Iia~~f~~~~sfsf~gVE~~~~~~P~ei~~~~~~~d~~~~i~ls~dg~ 188 (343)
T COG3401 109 DGKFLRTGLVKNRLFVEFIDSDLGHNEKYMELIIAADFQMGKSFSFTGVEATPKAEPKEITNVRVSFDLGNNIELSEDGS 188 (343)
T ss_pred chhhhhhhHHHhccchhheecccccccceeeeEEeecccccceeeeeeeecccccCCceeeeeeeecCCCCcceeeccCc
Confidence 653110 0111222234566789999999999999883 555555553333333333 34455555678899999988
Q ss_pred CCCcccEEEEEEEeCCCcceEEeccCCCccEEEecCCCCCCeEEEEEEEEEcCc-cCCCceeEEe---ecCCCCccceEE
Q psy4951 303 VGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQVNSVSYSV-ESAHPLQINH---TISPNPATYVAA 378 (1189)
Q Consensus 303 ~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g-~s~~~~~~~~---~t~p~pp~~l~~ 378 (1189)
.. +..|+|+-...+......+.... .+.+...--..|..|...|.++..++ ++.-+...+. .-.+..|.....
T Consensus 189 ~~--~~yy~IY~~~~g~e~~~~ia~t~-~n~y~d~~eglga~~~y~VTtVd~~~~es~lp~~~t~~~~~g~~e~pt~~g~ 265 (343)
T COG3401 189 EA--EDYYRIYASDSGNEEYGFIAQTT-ENSYYDVKEGLGAVEYYKVTTVDNTGFESDLPNEPTVGETGGRYEVPTIPGE 265 (343)
T ss_pred cc--cceEEEeccCCccccccceeecc-ccchhhhhhccCceeEEEEEEEcCCcceeccCCccccccccCCcccccCCCc
Confidence 75 34888877665444333222222 23333322223777778888877444 4433322111 111112222212
Q ss_pred eecCcEEEEEeeCC-CcceeEEEEEEEeeccCCCCcceEeeeecCCCCCCCCceEEEecCCCCCCeEEEEEEEEeCCccC
Q psy4951 379 LVDASNVTLEFPRP-EGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLES 457 (1189)
Q Consensus 379 ~~~~~sv~lsW~~p-~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~~~s 457 (1189)
......+.|.|... ...+..|.+... .++.......+ ..+......+.++..|.+.|.+.+..+.+
T Consensus 266 t~~~s~i~V~~E~~~~~~av~ytvyr~-----~~g~~~~~f~i--------t~~d~~d~~~ltg~~~~y~v~~v~~~gls 332 (343)
T COG3401 266 TTEASFIGVAAEQNQLRQAVTYTVYRV-----EDGTPTKFFTI--------TETDGQDNDMLTGVEYRYEVVAVDKAGLS 332 (343)
T ss_pred eeeeeeeeEEecccccceeeEEeeeec-----cCCCcceeeee--------eeccccchhhccccceeEEEEEecccccc
Confidence 22234445667654 223455555544 11222222222 33456677888999999999999876655
Q ss_pred c
Q psy4951 458 G 458 (1189)
Q Consensus 458 ~ 458 (1189)
.
T Consensus 333 ~ 333 (343)
T COG3401 333 S 333 (343)
T ss_pred c
Confidence 4
No 42
>KOG3632|consensus
Probab=96.91 E-value=0.0044 Score=74.20 Aligned_cols=207 Identities=16% Similarity=0.174 Sum_probs=128.4
Q ss_pred ccCCCEEEEEEEcCC----CCCeeEEEEEEEcCCCCeEEEEecCCcceEEEeCCC-CCCeEEEEEEEEeCCcCCCcEEEe
Q psy4951 480 QQSTDSVTLRYTPQN----SNHFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLT-PGKLYNFTVWTVADGVLSTPIQRH 554 (1189)
Q Consensus 480 ~~t~~sv~vsW~p~~----~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~l~~L~-p~t~Y~v~V~a~~~~~~S~~~~~~ 554 (1189)
.....++.|.|.|+. .+.+..|.+.....-.. ....++.+...+..|. .+..|.+.|.+...-|.+......
T Consensus 588 kqla~sv~vawepps~pP~~~~~~~~~~~v~~elrq---~l~~gs~tka~~E~ld~~a~s~~isvq~ltSrGsqd~lrc~ 664 (1335)
T KOG3632|consen 588 KQLAGSVHVAWEPPSSPPFTAPARMIGATVLMELRQ---TLYAGSLTKAMQESLDNSAHSGYISVQRLTSRGSQDQLRCI 664 (1335)
T ss_pred hhhccceeeeccCCCCCCccccceeeeeecchhhhh---hcccccchHHHHhhccccCCceeeehhhhhccCCCCcceee
Confidence 457889999999643 34556666644221110 1111223333344443 355788998887765555554433
Q ss_pred ---eccCCCCCcceEEEEEeCcEEEEEeeCCCCCCceEEEEEEcCCCeEEEeeccccEEEEcCCCCCCEEEEEEEEEeCC
Q psy4951 555 ---DRLYPEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEGFLIQNLTLHTSIVIGDLKPHRNYTFTVIVRSGT 631 (1189)
Q Consensus 555 ---~~t~p~~P~~l~v~~v~~~sv~l~W~~p~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~ 631 (1189)
....+..|.++++..++.++..++|-+-+.... .+.|...... .........++|.+|.||+.|.++|-|.-..
T Consensus 665 Llvgg~a~vvpsqlrv~n~tqtSa~itwvp~nsn~~--Hviyln~eE~-~ps~a~~y~ytf~~lrpgt~y~a~vea~~p~ 741 (1335)
T KOG3632|consen 665 LLVGGAAPVVPSQLRVWNATQTSAMITWVPFNSNFL--HVIYLNAEEP-RPSVAEMYNYTFMRLRPGTDYWASVEAALPR 741 (1335)
T ss_pred EeccccccccchhhhhhhhhchhhheeeeecCCCcc--eeeecCCccC-CCchhhhhHHHHhccCCCCccceecccccCc
Confidence 345678899999999999999999998775332 3444433321 1112344567899999999999999987652
Q ss_pred Cc-----ceeeeccceeEEEEeccCCC-CCcccccccccceeecccccceeee-ecccceEEEEecCCCCCC----CC-c
Q psy4951 632 ES-----SVLRRSLPVSAIFQTHESLP-GKMDRTIVDTWHFVRFFQAEKFHPI-DVQPGDITFEWSLPGSEQ----NG-V 699 (1189)
Q Consensus 632 g~-----~~~~~s~~~s~~~~T~~~~P-~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~tsv~l~W~~P~~~~----ng-~ 699 (1189)
.. .+..+.......|+|.++-| .+|. ++.+. ..+...+.++|.+|..+. || .
T Consensus 742 q~pwdl~~v~~etr~atv~f~tLpAGppappl----------------dV~vE~g~spg~l~vswrPptldsag~sngv~ 805 (1335)
T KOG3632|consen 742 QEPWDLRMVPMETRQATVLFRTLPAGPPAPPL----------------DVKVETGGSPGRLEVSWRPPTLDSAGCSNGVA 805 (1335)
T ss_pred CCCcccccchhhhhccceeeecccCCCCCCch----------------heeeecCCCCceeeeeccCceeccccccCcee
Confidence 11 11122334446788876544 4443 44442 456788999999997764 34 6
Q ss_pred ceEEEEEEe
Q psy4951 700 IRKFTISYA 708 (1189)
Q Consensus 700 i~~Y~i~y~ 708 (1189)
+++|.++-.
T Consensus 806 vtgYavyad 814 (1335)
T KOG3632|consen 806 VTGYAVYAD 814 (1335)
T ss_pred eeeeeeeeC
Confidence 899999643
No 43
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=96.56 E-value=0.013 Score=54.28 Aligned_cols=82 Identities=18% Similarity=0.354 Sum_probs=62.2
Q ss_pred ccCCCCCcceEEEeeeCCeEEEEeeCCC-CCcccEEEEEEEeCCCcceEEecc--CCCccEEEecCCC--CCCeEEEEEE
Q psy4951 276 AVYPKPPTNLTLEKTSSNAVLVKWKEPV-GSIFTEYSIRYRTEEDKTWVRLPN--VGTSLEAEVTDMV--PGEKCMIQVN 350 (1189)
Q Consensus 276 ~t~p~pP~~l~v~~~t~~sv~vsW~~p~-~g~i~~Y~V~~~~~~~~~~~~~~~--~~~~~~~~i~~L~--p~t~Y~~~V~ 350 (1189)
.....+|.|+++...+ ....|+|+++. ...-..|.|+|+..+...|..++. ....+++.+++.. +...|.++|+
T Consensus 19 ~~~lp~P~nv~~~s~n-f~~iL~W~~~~~~~~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~ 97 (107)
T PF01108_consen 19 SASLPAPQNVTVDSVN-FKHILRWDPGPGSPPNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARVR 97 (107)
T ss_dssp -SSGSSCEEEEEEEET-TEEEEEEEESTTSSSTEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEEE
T ss_pred cccCCCCCeeEEEEEC-CceEEEeCCCCCCCCCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEEE
Confidence 4456789999998864 55889999955 345678999999667778888732 2234889998755 6889999999
Q ss_pred EEEcCccC
Q psy4951 351 SVSYSVES 358 (1189)
Q Consensus 351 A~~~~g~s 358 (1189)
|..++..|
T Consensus 98 A~~~~~~S 105 (107)
T PF01108_consen 98 AEVGNQTS 105 (107)
T ss_dssp EEETTEEE
T ss_pred EEeCCccC
Confidence 99877655
No 44
>KOG0613|consensus
Probab=95.89 E-value=0.39 Score=61.02 Aligned_cols=508 Identities=12% Similarity=0.068 Sum_probs=237.0
Q ss_pred cEEEEEeeCCC---CCCceEEEEEEEeCCCCCccceEEeeeccEEEEcCCCCCCeEEEEEEEEeCCccCCcee--eeccc
Q psy4951 203 FGLNISWKSDV---NSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAISHGLRSEPHD--YFQAV 277 (1189)
Q Consensus 203 ~si~lsW~~p~---~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~s~~i~~L~p~t~Y~v~V~a~~~~~~s~~~~--~~~~t 277 (1189)
.-+...|..+. .....+|.|+.+..+...+. ..+......-.+..+. |+++|+++...+...+.. .....
T Consensus 154 ~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s~~~-~~l~~~~~~s~~~~a~----~e~~v~~v~s~gqp~~~~~~~~~g~ 228 (1205)
T KOG0613|consen 154 ARVLPAWRPPREDGGRKREEYIIERRQAGRSPWL-KRLTQPTDDSTDTDAH----YESRVRAVVSAGQPEPLERWEILGE 228 (1205)
T ss_pred ceecccccCCccCccceeecceEEEEeccCCCcc-cccccccCCcceeccc----cceeEEEEEecCCCccchhhhhccc
Confidence 44567788774 23467888888776665441 2222222223333333 666777666433333322 12223
Q ss_pred CCCCCcceEEEe---eeCCeEEEEeeCCCCC---cccEEEEEEEe-CCCcceEEecc-CCCccEEEecCCCCCCeEEEEE
Q psy4951 278 YPKPPTNLTLEK---TSSNAVLVKWKEPVGS---IFTEYSIRYRT-EEDKTWVRLPN-VGTSLEAEVTDMVPGEKCMIQV 349 (1189)
Q Consensus 278 ~p~pP~~l~v~~---~t~~sv~vsW~~p~~g---~i~~Y~V~~~~-~~~~~~~~~~~-~~~~~~~~i~~L~p~t~Y~~~V 349 (1189)
.+.+...+.+.. .....+.++|..+.++ .+.+|.+.... .++..+..... .....+++.-.-.++..|.+.|
T Consensus 229 ~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~~~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v 308 (1205)
T KOG0613|consen 229 LIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQRKHKGGNTKTIQNDGPEPELSWTVADKRQGCQDRFKV 308 (1205)
T ss_pred ccCCCCccccccccchhheeeeEEeecCCCchHHHHhcchhhhcccCCCccccccccCCccccceeeecccCCcccceee
Confidence 344444444433 3445677888777643 24455555444 23333332222 2234667777778888999998
Q ss_pred EEEEcCccCCC---ceeEEeecCCCC----ccce-EEeecCcEEEEEeeCCC----cceeEEEEEEEeeccCCCCcceEe
Q psy4951 350 NSVSYSVESAH---PLQINHTISPNP----ATYV-AALVDASNVTLEFPRPE----GRIEYYLVTWRGIGPEATSTELFT 417 (1189)
Q Consensus 350 ~A~~~~g~s~~---~~~~~~~t~p~p----p~~l-~~~~~~~sv~lsW~~p~----g~i~~Y~V~~~~~~~~~~~~~~~~ 417 (1189)
...-..+.+.. ........++.. +.++ +.....+.+.+.|.-.. ..+.+|.+.-. ......+.
T Consensus 309 ~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~---~~~~~~~~-- 383 (1205)
T KOG0613|consen 309 TEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEV---SSESLGAL-- 383 (1205)
T ss_pred eEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccccCCcCCchheeeccccc---cccccccc--
Confidence 87655444432 212222222222 2222 23345578888887542 22445544432 11222111
Q ss_pred eeecCCCCCCCCceEEEecCCCCCCeEEEEEEEEeCCccCcceEEEEEc------CC-------------CCccceEEEe
Q psy4951 418 KNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGVTSLSART------MP-------------LIESEVLVVN 478 (1189)
Q Consensus 418 ~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~~~s~~~~~~~~t------~P-------------~~p~~~~v~~ 478 (1189)
..+.. ......+.+.++-++..|..++.|.|..+........... .| ..+..+.+..
T Consensus 384 -~~~~~---~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~ 459 (1205)
T KOG0613|consen 384 -PCPVG---TVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRT 459 (1205)
T ss_pred -ccccc---cccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCccccccccccccccCCccccccc
Confidence 11111 1245577888999999999999999987765543222111 11 0011111111
Q ss_pred eccCCCEEEEEEE---cCCCCCeeEEEEEEEcCCCCeEEEEecCCcceEEEeCCCCCCeEEEEEEEEeCCcCCCcEEEee
Q psy4951 479 NQQSTDSVTLRYT---PQNSNHFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTPIQRHD 555 (1189)
Q Consensus 479 ~~~t~~sv~vsW~---p~~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~~~~S~~~~~~~ 555 (1189)
....++..+.|. +..-+.. +.............-..+.++..+..|.+..+-.++.+.........
T Consensus 460 -~~~s~~~~~~~~tt~~~~~~~s----------~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~k~~~~~~~~l~ 528 (1205)
T KOG0613|consen 460 -PDSSTSMPMTTVTTIKDGLPLS----------DRSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQGKPVPSLDRKLP 528 (1205)
T ss_pred -CCCCccccceeEeeccCCcccc----------cccccccccchhhheeeccCCCccchhhhhhhccCCCCCCccccccc
Confidence 011111112222 1110000 00001111112334556778888888877766655533332222222
Q ss_pred ccCCCCCcceEEEEEeCcEEEEEeeCCCCC---C-ceEEEEEEcCCCeEEEeeccccEEEEcCCCCCCEEEEEEEEEeCC
Q psy4951 556 RLYPEPITRINATEITDTSVSLTWDSPRGE---Y-NAFEVQYLNTEGFLIQNLTLHTSIVIGDLKPHRNYTFTVIVRSGT 631 (1189)
Q Consensus 556 ~t~p~~P~~l~v~~v~~~sv~l~W~~p~g~---i-~~Y~V~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~ 631 (1189)
.....++..+.-..--.+...|.|.+-... + ..|.+.-...+..........+..++.++.|++.|.+++.+.+..
T Consensus 529 ~~~s~a~~~~~~~~~~~g~p~l~~~~~~~E~~~vs~~~~~a~~qlg~~~~~~~r~gtt~t~~~~~p~~~~~~t~~~k~~~ 608 (1205)
T KOG0613|consen 529 AAKSSAPKPIHTQENQPGTPTLEWEPKPAEASKVSLHYASATRQLGVWRVPESRPGTTETIGSILPGHEYHVTIKAKNEL 608 (1205)
T ss_pred ccccCCcccccccccCCCCcccccCCCcccccccchhhhhhhhhccCCcccccCCCcccccccccccccceeehhhhhcc
Confidence 222223322221122345556677654311 1 122222211111111111122677889999999999999999988
Q ss_pred CcceeeeccceeEEEEeccCCCCCcccccccccceeecccccceeeeecccceEEEEecCCCCCCCCcceEEEEEEeccC
Q psy4951 632 ESSVLRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFFQAEKFHPIDVQPGDITFEWSLPGSEQNGVIRKFTISYAQEA 711 (1189)
Q Consensus 632 g~~~~~~s~~~s~~~~T~~~~P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~tsv~l~W~~P~~~~ng~i~~Y~i~y~~~~ 711 (1189)
| .+.+.+....+...-|..+. ..+..-........+..++|..+....--....|....-..+
T Consensus 609 g-----E~~ps~~~~t~k~~D~~q~~------------~~~~~~~~~ks~~~~~k~s~l~~l~k~~~~a~~~~~~~~~vd 671 (1205)
T KOG0613|consen 609 G-----ESRPSSKSTTLKWQDPSQLK------------RRPVSEPSYKSPDSSQKPSKLVGLSKMDLPANLESQVKPTVV 671 (1205)
T ss_pred c-----ccCCCCCCcccccccccccc------------ccccCCccccccccccchhcccchhhccccccceeeeecccc
Confidence 7 55555322222222222211 000011122344567888998877653334445544432222
Q ss_pred cccceeeeeeeeecCcceeeEEeC-CCCCCcccceEEEEEEEEEecCCCCc
Q psy4951 712 ACNHNQRLHAKFQLPRVNSKKLKG-WPGTLRTDWRSYIYKLQAELGLHMEP 761 (1189)
Q Consensus 712 ~~~~~~~~~~~~~~~~~~~~~i~~-~pg~~~~~~t~Y~~~V~A~~~~G~g~ 761 (1189)
........+ -. .......+.. .+. +.|.+.+.+.+..+..+
T Consensus 672 ~~~K~kv~~--~~-~e~d~~i~~~~~t~------si~~p~k~~e~~~~~~~ 713 (1205)
T KOG0613|consen 672 SSPKKKVKK--KK-QEKDLEILAKKGTT------SIVEPEKPPESEAATPA 713 (1205)
T ss_pred CCccccccc--cc-cccchhhhccCCCC------cccccccCCccccCCcc
Confidence 221100000 00 1122234455 666 77888887777766543
No 45
>KOG3632|consensus
Probab=95.83 E-value=0.013 Score=70.36 Aligned_cols=214 Identities=15% Similarity=0.145 Sum_probs=127.7
Q ss_pred CcceEEEEEeCcEEEEEeeCCC-----CCCceEEEEEEcCCCeEEEeeccccEEEEcCCC-CCCEEEEEEEEEeCCCcce
Q psy4951 562 ITRINATEITDTSVSLTWDSPR-----GEYNAFEVQYLNTEGFLIQNLTLHTSIVIGDLK-PHRNYTFTVIVRSGTESSV 635 (1189)
Q Consensus 562 P~~l~v~~v~~~sv~l~W~~p~-----g~i~~Y~V~~~~~~~~~~~~~~~~~~~~l~~L~-p~t~Y~~~V~A~~~~g~~~ 635 (1189)
|..+.+......++.|.|++|. +...+|.+.....-..... ....+...+..|. .+..|.++|.+.++-|
T Consensus 581 pr~~~~vkqla~sv~vawepps~pP~~~~~~~~~~~v~~elrq~l~-~gs~tka~~E~ld~~a~s~~isvq~ltSrG--- 656 (1335)
T KOG3632|consen 581 PRTGAAVKQLAGSVHVAWEPPSSPPFTAPARMIGATVLMELRQTLY-AGSLTKAMQESLDNSAHSGYISVQRLTSRG--- 656 (1335)
T ss_pred ccchhhhhhhccceeeeccCCCCCCccccceeeeeecchhhhhhcc-cccchHHHHhhccccCCceeeehhhhhccC---
Confidence 4445555567889999999975 4466777655332111111 1122222333333 4557899999999988
Q ss_pred eeeccceeEEEEeccCCCCCcccccccccceeecccccceeeeecccceEEEEecCCCCCCCCcceEEEEEEeccCcccc
Q psy4951 636 LRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFFQAEKFHPIDVQPGDITFEWSLPGSEQNGVIRKFTISYAQEAACNH 715 (1189)
Q Consensus 636 ~~~s~~~s~~~~T~~~~P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~tsv~l~W~~P~~~~ng~i~~Y~i~y~~~~~~~~ 715 (1189)
.+.......-+...+|..|. +|++.+++.++..++|-+-.+. ....| |-.+....
T Consensus 657 --sqd~lrc~Llvgg~a~vvps----------------qlrv~n~tqtSa~itwvp~nsn-----~~Hvi-yln~eE~~- 711 (1335)
T KOG3632|consen 657 --SQDQLRCILLVGGAAPVVPS----------------QLRVWNATQTSAMITWVPFNSN-----FLHVI-YLNAEEPR- 711 (1335)
T ss_pred --CCCcceeeEeccccccccch----------------hhhhhhhhchhhheeeeecCCC-----cceee-ecCCccCC-
Confidence 66666666666677777666 9999999999999999765432 11222 32222110
Q ss_pred eeeeeeeeecCcceeeEEeC-CCCCCcccceEEEEEEEEEecC-CC--------CccccceeeeeccCcCCCCCCCcccc
Q psy4951 716 NQRLHAKFQLPRVNSKKLKG-WPGTLRTDWRSYIYKLQAELGL-HM--------EPETIWKQKMPIPRRCGLNPNSDIIK 785 (1189)
Q Consensus 716 ~~~~~~~~~~~~~~~~~i~~-~pg~~~~~~t~Y~~~V~A~~~~-G~--------g~~s~~~~~~t~~~~~~~~~~~~~~~ 785 (1189)
... ...-.+++.+ .|| +.|..+|-|.-.- +. +.-.....+.++
T Consensus 712 ------ps~-a~~y~ytf~~lrpg------t~y~a~vea~~p~q~pwdl~~v~~etr~atv~f~tL-------------- 764 (1335)
T KOG3632|consen 712 ------PSV-AEMYNYTFMRLRPG------TDYWASVEAALPRQEPWDLRMVPMETRQATVLFRTL-------------- 764 (1335)
T ss_pred ------Cch-hhhhHHHHhccCCC------CccceecccccCcCCCcccccchhhhhccceeeecc--------------
Confidence 122 4455678889 999 9999999887651 21 111223333333
Q ss_pred cccccccccccccccccCCCCCCCCCccceeeeeeeEEEEEeccccCcC---CCc-cEEEEEEEEE
Q psy4951 786 VNENNIKRINSFNIYFLAPPRPSSQVVPTEVCRTSTTIQIRFRKNYFSE---KNG-AIIYYTVIVA 847 (1189)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~pp~p~~~~~~~~~~~~~~si~v~~~~~~~~~---~~g-~I~~y~v~v~ 847 (1189)
..-||.||..+.+ .-..+...+.++|.++.... .|| .++.|.|+..
T Consensus 765 ---------------pAGppappldV~v-E~g~spg~l~vswrPptldsag~sngv~vtgYavyad 814 (1335)
T KOG3632|consen 765 ---------------PAGPPAPPLDVKV-ETGGSPGRLEVSWRPPTLDSAGCSNGVAVTGYAVYAD 814 (1335)
T ss_pred ---------------cCCCCCCchheee-ecCCCCceeeeeccCceeccccccCceeeeeeeeeeC
Confidence 0234444433222 22234456888998887655 455 8999999854
No 46
>PF01108 Tissue_fac: Tissue factor; PDB: 3OG4_B 3OG6_B 1FYH_E 1FG9_D 1JRH_I 3DGC_R 3DLQ_R 1LQS_R 1Y6M_R 1J7V_R ....
Probab=95.67 E-value=0.11 Score=48.17 Aligned_cols=80 Identities=18% Similarity=0.096 Sum_probs=58.9
Q ss_pred CCCCccceEEEeeccCCCEEEEEEEc-CCCCCeeEEEEEEE-cCCCCeEEE--EecCCcceEEEeCCC--CCCeEEEEEE
Q psy4951 467 MPLIESEVLVVNNQQSTDSVTLRYTP-QNSNHFDFYRFTLS-EPDIPVIEK--AANDTDRKVTFNNLT--PGKLYNFTVW 540 (1189)
Q Consensus 467 ~P~~p~~~~v~~~~~t~~sv~vsW~p-~~~g~i~~Y~V~~~-~~~~~~~~~--~~~~~~~~~~l~~L~--p~t~Y~v~V~ 540 (1189)
..++|.++.+.. ......|.|+| .....-..|.|+|+ ...+.+... ..+...+.+.+++.. +...|.++|+
T Consensus 21 ~lp~P~nv~~~s---~nf~~iL~W~~~~~~~~~~~ytVq~~~~~~~~W~~v~~C~~i~~~~Cdlt~~~~~~~~~Y~~rV~ 97 (107)
T PF01108_consen 21 SLPAPQNVTVDS---VNFKHILRWDPGPGSPPNVTYTVQYKKYGSSSWKDVPGCQNITETSCDLTDETSDPSESYYARVR 97 (107)
T ss_dssp SGSSCEEEEEEE---ETTEEEEEEEESTTSSSTEEEEEEEEESSTSCEEEECCEEEESSSEEECTTCCTTTTSEEEEEEE
T ss_pred cCCCCCeeEEEE---ECCceEEEeCCCCCCCCCeEEEEEEEecCCcceeeccceecccccceeCcchhhcCcCCEEEEEE
Confidence 334566677765 36778999997 33445679999999 556666665 456667899998855 6889999999
Q ss_pred EEeCCcCCC
Q psy4951 541 TVADGVLST 549 (1189)
Q Consensus 541 a~~~~~~S~ 549 (1189)
|..++..|.
T Consensus 98 A~~~~~~S~ 106 (107)
T PF01108_consen 98 AEVGNQTSD 106 (107)
T ss_dssp EEETTEEEE
T ss_pred EEeCCccCC
Confidence 999876653
No 47
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=95.28 E-value=22 Score=50.19 Aligned_cols=102 Identities=11% Similarity=-0.019 Sum_probs=50.9
Q ss_pred eEEEeCCCCCCeEEEEEEEEeCCcCCCcEEEeeccCCCCCcceEEEE-----EeCcEEEEEeeCCCCCCceEEEEEEcCC
Q psy4951 523 KVTFNNLTPGKLYNFTVWTVADGVLSTPIQRHDRLYPEPITRINATE-----ITDTSVSLTWDSPRGEYNAFEVQYLNTE 597 (1189)
Q Consensus 523 ~~~l~~L~p~t~Y~v~V~a~~~~~~S~~~~~~~~t~p~~P~~l~v~~-----v~~~sv~l~W~~p~g~i~~Y~V~~~~~~ 597 (1189)
.+.+.-..+| .|.|+|.|.|.-+.......... -.|..+|.+.. .....+.++=.-..|....|...+.+..
T Consensus 1661 ~~~vt~~~pG-~Y~VtL~aSN~vG~~t~s~~i~v--~epi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~ 1737 (2740)
T TIGR00864 1661 GAKLNPLEAG-PCDIFLQAANLLGQATADCTIDF--LEPAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLEEGD 1737 (2740)
T ss_pred eeEEecCCCc-eEEEEEEEeecccceeeEEEEEE--EEEcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEECCCC
Confidence 4445556776 99999999998665533321111 11222222210 1133444443334454555666554432
Q ss_pred CeEEEeeccccEEEEcCCCCCCEEEEEEEEEeCCC
Q psy4951 598 GFLIQNLTLHTSIVIGDLKPHRNYTFTVIVRSGTE 632 (1189)
Q Consensus 598 ~~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~g 632 (1189)
...... ....+++ =.+| .|.++|.|.|..|
T Consensus 1738 s~~~s~--p~~tHtf--~~~G-~y~VtVta~N~vs 1767 (2740)
T TIGR00864 1738 DLETSE--PFMSHSF--PSAG-LHLVTMKAFNELG 1767 (2740)
T ss_pred CcccCC--CceEEEc--cCCc-eEEEEEEEEcccc
Confidence 211111 1112222 2344 7999999999886
No 48
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=95.25 E-value=0.12 Score=47.78 Aligned_cols=68 Identities=26% Similarity=0.373 Sum_probs=49.1
Q ss_pred CCCcceEEEEEeCcEEEEEeeCCC------CC---------CceEEEEEEcCCCe--EEEeeccccEEEEcCCCCCCEEE
Q psy4951 560 EPITRINATEITDTSVSLTWDSPR------GE---------YNAFEVQYLNTEGF--LIQNLTLHTSIVIGDLKPHRNYT 622 (1189)
Q Consensus 560 ~~P~~l~v~~v~~~sv~l~W~~p~------g~---------i~~Y~V~~~~~~~~--~~~~~~~~~~~~l~~L~p~t~Y~ 622 (1189)
+||. +.+ ....+++.|.+.+|. +. ...|.|.++..... ..........++|.+|.|++.|.
T Consensus 4 gPP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~YC 81 (106)
T PF09294_consen 4 GPPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEKKKEIETKNSSVTLSDLKPGTNYC 81 (106)
T ss_dssp -SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCEEEEEESSSEEEEEES--TTSEEE
T ss_pred cCCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccceEEEeecCCEEEEeCCCCCCCEE
Confidence 5665 877 668999999999885 11 23699998887764 33344566777999999999999
Q ss_pred EEEEEEe
Q psy4951 623 FTVIVRS 629 (1189)
Q Consensus 623 ~~V~A~~ 629 (1189)
|+|+|..
T Consensus 82 v~V~~~~ 88 (106)
T PF09294_consen 82 VSVQAFS 88 (106)
T ss_dssp EEEEEEE
T ss_pred EEEEEEe
Confidence 9999954
No 49
>KOG4367|consensus
Probab=95.12 E-value=0.018 Score=62.67 Aligned_cols=81 Identities=16% Similarity=0.156 Sum_probs=62.1
Q ss_pred CCCCceeeec--ccccEEEEEeeCCC--CCCceEEEEEEEeCCCCCccceEEeeeccEEEEcCCCCCCeEEEEEEEEeCC
Q psy4951 190 PSFPIIEDLR--PIEFGLNISWKSDV--NSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAISHG 265 (1189)
Q Consensus 190 P~~p~~~~~~--~~~~si~lsW~~p~--~~~i~~Y~V~~~~~~~~~~~~~~~~~~~~s~~i~~L~p~t~Y~v~V~a~~~~ 265 (1189)
|++|.+.... ...++++|+|..|+ ..+.+||.+++...+++. +.....+.++-+++.||.-++.|..||.|+|..
T Consensus 438 patpilq~~ec~t~nns~t~~wkqp~~~~~~~dg~~leld~g~~g~-frevy~g~etmctvdglhfns~y~arvka~n~t 516 (699)
T KOG4367|consen 438 PATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQ-FREVYVGKETMCTVDGLHFNSTYNARVKAFNKT 516 (699)
T ss_pred CCCceeehhhhhccCCceEEEeecCCCCCCCCcceEEEeecCCCCc-eeEEEecCceeEEecceecchhHHHHHHHhhcc
Confidence 6666644333 56789999999775 456899999997664433 334556778899999999999999999999987
Q ss_pred ccCCce
Q psy4951 266 LRSEPH 271 (1189)
Q Consensus 266 ~~s~~~ 271 (1189)
+.|..+
T Consensus 517 g~s~ys 522 (699)
T KOG4367|consen 517 GVSPYS 522 (699)
T ss_pred CCCccc
Confidence 766544
No 50
>KOG4367|consensus
Probab=95.08 E-value=0.018 Score=62.59 Aligned_cols=74 Identities=12% Similarity=0.120 Sum_probs=62.7
Q ss_pred eeCCeEEEEeeCCC--CCcccEEEEEEEeCCCcceEEeccCCCccEEEecCCCCCCeEEEEEEEEEcCccCCCceeE
Q psy4951 290 TSSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQVNSVSYSVESAHPLQI 364 (1189)
Q Consensus 290 ~t~~sv~vsW~~p~--~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~~~ 364 (1189)
...++++|+|+.|. ...+++|.++....+++.++++..+.+ +-++++||.-.+.|..+|.|+|..|.|+.+.+.
T Consensus 450 t~nns~t~~wkqp~~~~~~~dg~~leld~g~~g~frevy~g~e-tmctvdglhfns~y~arvka~n~tg~s~ys~tl 525 (699)
T KOG4367|consen 450 THNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYVGKE-TMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTL 525 (699)
T ss_pred ccCCceEEEeecCCCCCCCCcceEEEeecCCCCceeEEEecCc-eeEEecceecchhHHHHHHHhhccCCCccccee
Confidence 35689999999665 457899999999888888888876654 999999999999999999999999999865543
No 51
>KOG4152|consensus
Probab=94.91 E-value=0.12 Score=58.11 Aligned_cols=122 Identities=17% Similarity=0.222 Sum_probs=69.9
Q ss_pred EEcCCCCCCEEEEEEEEEeCCCcceeeecccee--EEEE-eccCCCCCcccccccccceeecccccceeeeecccceEEE
Q psy4951 611 VIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVS--AIFQ-THESLPGKMDRTIVDTWHFVRFFQAEKFHPIDVQPGDITF 687 (1189)
Q Consensus 611 ~l~~L~p~t~Y~~~V~A~~~~g~~~~~~s~~~s--~~~~-T~~~~P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~tsv~l 687 (1189)
.-..|.+|+.|.|+|.|.|+.| -.+.+ ..+. ..++.|++|+ ..++. .+-..+.+
T Consensus 650 ~k~~lv~Gq~yrfrV~aIng~G------~gp~s~i~~~kTc~pG~P~apS----------------~~ri~-k~~eGi~l 706 (830)
T KOG4152|consen 650 VKTSLVTGQAYRFRVTAINGKG------PGPASTILKLKTCAPGKPTAPS----------------GARIK-KTIEGISL 706 (830)
T ss_pred cccccccccceeeeeeeeeccC------CCchhhheeeeeccCCCCCCcc----------------ccccc-ccccceee
Confidence 3457999999999999999987 22333 2333 3445565554 44332 23456899
Q ss_pred EecCCCCCCCCcceEEEEEEe---ccCcccceee-eeeeeecCcceeeEEe---------C-CCCCCcccceEEEEEEEE
Q psy4951 688 EWSLPGSEQNGVIRKFTISYA---QEAACNHNQR-LHAKFQLPRVNSKKLK---------G-WPGTLRTDWRSYIYKLQA 753 (1189)
Q Consensus 688 ~W~~P~~~~ng~i~~Y~i~y~---~~~~~~~~~~-~~~~~~~~~~~~~~i~---------~-~pg~~~~~~t~Y~~~V~A 753 (1189)
.|++|.....|.|..|..... .......++. ...... +-.+.+.++ + .-+ -.-.|+|.|
T Consensus 707 ~weppt~p~sg~Iieys~ylAi~tq~~~~~~sql~fmr~yc-g~~t~c~vt~g~l~tA~~d~t~~------paivfri~a 779 (830)
T KOG4152|consen 707 VWEPPTKPGSGTIIEYSPYLAIITQAGATGVSQLPFMRSYC-GIITTCVVTSGKLITAVPDITTG------PAIVFRIVA 779 (830)
T ss_pred cccCCCCCCCcceEEeehhhHhhhhhhccCccccceeeeec-ccceeeEEecccceeeccccccC------cceEEEEEe
Confidence 999998654578888876541 1111111110 011122 222222222 1 222 445899999
Q ss_pred EecCCCCcc
Q psy4951 754 ELGLHMEPE 762 (1189)
Q Consensus 754 ~~~~G~g~~ 762 (1189)
.|..|+|+.
T Consensus 780 knekGyGpa 788 (830)
T KOG4152|consen 780 KNEKGYGPA 788 (830)
T ss_pred cCCCCCCcc
Confidence 999999983
No 52
>TIGR00864 PCC polycystin cation channel protein. Note: this model has been restricted to the amino half because for technical reasons.
Probab=94.73 E-value=30 Score=48.95 Aligned_cols=104 Identities=12% Similarity=0.049 Sum_probs=52.8
Q ss_pred EEEecCCCCCCeEEEEEEEEEcCccCCCceeEEeecCCCCccceEEe------ecCcEEEEEeeCCCcceeEEEEEEEee
Q psy4951 333 EAEVTDMVPGEKCMIQVNSVSYSVESAHPLQINHTISPNPATYVAAL------VDASNVTLEFPRPEGRIEYYLVTWRGI 406 (1189)
Q Consensus 333 ~~~i~~L~p~t~Y~~~V~A~~~~g~s~~~~~~~~~t~p~pp~~l~~~------~~~~sv~lsW~~p~g~i~~Y~V~~~~~ 406 (1189)
.+.++-.+|| .|.|++.|.|.-|.......+.+.. |...+... .....++++=.-..|.-..|+..+.
T Consensus 1661 ~~~vt~~~pG-~Y~VtL~aSN~vG~~t~s~~i~v~e---pi~~L~L~aS~~~aavn~~V~fs~~lt~GS~vty~W~~g-- 1734 (2740)
T TIGR00864 1661 GAKLNPLEAG-PCDIFLQAANLLGQATADCTIDFLE---PAGNLMLQASDNPAAVNALINLSAELAEGSGLQYRWFLE-- 1734 (2740)
T ss_pred eeEEecCCCc-eEEEEEEEeecccceeeEEEEEEEE---EcCceEEeccCCcccCCCeEEEEEEecCCCCcEEEEEEC--
Confidence 3444456676 7999999999888776443333322 22222111 1124455554434555555666555
Q ss_pred ccCCCCcceEeeeecCCCCCCCCceEEEecCCCCCCeEEEEEEEEeCCccCc
Q psy4951 407 GPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLESG 458 (1189)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~~~s~ 458 (1189)
. +..+. ... ....+++ ..--.|.|+|.|.|..+...
T Consensus 1735 -d--G~s~~----~s~------p~~tHtf---~~~G~y~VtVta~N~vss~~ 1770 (2740)
T TIGR00864 1735 -E--GDDLE----TSE------PFMSHSF---PSAGLHLVTMKAFNELGSAN 1770 (2740)
T ss_pred -C--CCCcc----cCC------CceEEEc---cCCceEEEEEEEEccccccc
Confidence 1 11110 000 1112221 22237999999999876443
No 53
>PF09294 Interfer-bind: Interferon-alpha/beta receptor, fibronectin type III; InterPro: IPR015373 Members of this family adopt a secondary structure consisting of seven beta-strands arranged in an immunoglobulin-like beta-sandwich, in a Greek-key topology. They are required for binding to interferon-alpha []. ; PDB: 1A21_A 3LQM_B 3ELA_T 1AHW_C 2A2Q_T 1TFH_B 1FAK_T 1WSS_T 1W2K_T 2FIR_T ....
Probab=94.70 E-value=0.15 Score=47.20 Aligned_cols=70 Identities=17% Similarity=0.383 Sum_probs=49.0
Q ss_pred CCCCcceEEEeeeCCeEEEEeeCCC-----CCc---------ccEEEEEEEeCCCc-ceEEeccCCCccEEEecCCCCCC
Q psy4951 279 PKPPTNLTLEKTSSNAVLVKWKEPV-----GSI---------FTEYSIRYRTEEDK-TWVRLPNVGTSLEAEVTDMVPGE 343 (1189)
Q Consensus 279 p~pP~~l~v~~~t~~sv~vsW~~p~-----~g~---------i~~Y~V~~~~~~~~-~~~~~~~~~~~~~~~i~~L~p~t 343 (1189)
.+||. +.+ ....+++.|.+.+|. ++. -..|.|.|+..+.. ..... ......+.|.+|.|++
T Consensus 3 lgPP~-v~v-~~~~~~l~V~i~~P~~~~~~~~~~~~l~~~~~~~~Y~v~~~~~~~~~~~~~~--~~~~~~~~l~~L~p~t 78 (106)
T PF09294_consen 3 LGPPS-VNV-SSCGGSLHVTIKPPMTPLRAGGKNSSLRDIYPSLSYNVSYWKNGSNEKKKEI--ETKNSSVTLSDLKPGT 78 (106)
T ss_dssp E-SSE-EEE-EEETTEEEEEEEESEEEEECSSSEEEHHHHHGG-EEEEEEEETTTSCEEEEE--ESSSEEEEEES--TTS
T ss_pred ecCCE-EEE-EECCCEEEEEEECCCcccccCCCCCcHHHhCCCeEEEEEEEeCCCccceEEE--eecCCEEEEeCCCCCC
Confidence 46776 777 667899999999986 110 24699999998766 22332 2334678999999999
Q ss_pred eEEEEEEEE
Q psy4951 344 KCMIQVNSV 352 (1189)
Q Consensus 344 ~Y~~~V~A~ 352 (1189)
.|-|+|.|.
T Consensus 79 ~YCv~V~~~ 87 (106)
T PF09294_consen 79 NYCVSVQAF 87 (106)
T ss_dssp EEEEEEEEE
T ss_pred CEEEEEEEE
Confidence 999999993
No 54
>KOG4806|consensus
Probab=94.53 E-value=2.7 Score=45.57 Aligned_cols=115 Identities=17% Similarity=0.153 Sum_probs=72.5
Q ss_pred EEecCCCCCCeEEEEEEEEeCCccCcceE------EEEEcCCCCccceEEEeeccCCCEEEEEEE--cCCCCCeeEEEEE
Q psy4951 433 ILIDQLTPGVKYQFTIRTVSYNLESGVTS------LSARTMPLIESEVLVVNNQQSTDSVTLRYT--PQNSNHFDFYRFT 504 (1189)
Q Consensus 433 ~~i~~L~p~t~Y~v~V~a~~~~~~s~~~~------~~~~t~P~~p~~~~v~~~~~t~~sv~vsW~--p~~~g~i~~Y~V~ 504 (1189)
+.-..+.|+..|..++...|+...-.... .++...|..|.+..+.....+-.+.+|.|. |+. -..|-|+
T Consensus 286 ~~Qfvv~~~~~~~~rf~~~ndde~~~~v~V~aSt~~t~~~~P~LP~dTtVk~v~r~CSsAtIaW~gs~d~---~~kyCIy 362 (454)
T KOG4806|consen 286 IRQFVVLPGERYLMRFEPSNDDEALQKVMVAASTEATFRDLPELPQDTTVKNVRRRCSSATIAWNGSPDE---ELKYCIY 362 (454)
T ss_pred eeEEEecCCCceEEEEEecCCchhhheeEeeeecccccCcCCCCCCCceEeeeccccchheeeeccCcch---heeEEEE
Confidence 33456788999999999888653332222 223446777888788776667789999999 332 2355555
Q ss_pred EEcCCCC-------------------eE---E--------EEecCCcceEEEeCCCCCCeEEEEEEEEeCCcCCCc
Q psy4951 505 LSEPDIP-------------------VI---E--------KAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTP 550 (1189)
Q Consensus 505 ~~~~~~~-------------------~~---~--------~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~~~~S~~ 550 (1189)
....... .. . .....+..+-+|.||.||..|.+.|.|...++.+-|
T Consensus 363 ~~~~~~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g~~lp 438 (454)
T KOG4806|consen 363 VFNLPQRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMGKPLP 438 (454)
T ss_pred EecccchhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCCcccc
Confidence 4432110 00 0 001122335679999999999999999877655544
No 55
>KOG1720|consensus
Probab=94.51 E-value=0.024 Score=56.77 Aligned_cols=52 Identities=27% Similarity=0.130 Sum_probs=42.2
Q ss_pred CcceEEeHHHHHHHhcCCCCCCHHHHHHHHHhCccccccChhhhhhHHHHHHHHHhc
Q psy4951 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEG 1153 (1189)
Q Consensus 1097 rtg~fi~~~~~~~~~~~~~~~dv~~~v~~~r~~R~~~v~~~~Qy~f~y~~~~~~~~~ 1153 (1189)
|||+.||..++.. ....--+.+-.||..|++|||+++|++++++--.-++.+
T Consensus 160 RTG~liAc~lmy~-----~g~ta~eaI~~lR~~RpG~V~gpqQ~~l~~~q~~~~~~~ 211 (225)
T KOG1720|consen 160 RTGTLIACYLMYE-----YGMTAGEAIAWLRICRPGAVIGPQQHKLLHKQRDLWLAG 211 (225)
T ss_pred chhHHHHHHHHHH-----hCCCHHHHHHHHHhcCCccccCHHHHHHHHHHHHHHhhh
Confidence 9999999955543 456677899999999999999999999998876544444
No 56
>KOG1225|consensus
Probab=93.96 E-value=0.13 Score=60.35 Aligned_cols=149 Identities=14% Similarity=0.060 Sum_probs=107.0
Q ss_pred eecccccEEEEEeeCCCCCCceEEEEEEEeCC--CCCccceEEeeeccEEEEcCCCCCCeEEEEEEEEeCCccCCceeee
Q psy4951 197 DLRPIEFGLNISWKSDVNSRQDNFEVIYNRND--TITEDPITVVTTDSKLLLENLYPGAGYSIQVFAISHGLRSEPHDYF 274 (1189)
Q Consensus 197 ~~~~~~~si~lsW~~p~~~~i~~Y~V~~~~~~--~~~~~~~~~~~~~~s~~i~~L~p~t~Y~v~V~a~~~~~~s~~~~~~ 274 (1189)
...-+..++-+.|... .....|...+...+ +.. ....++.....+.+..|.|++.|.++|.++.....+.+....
T Consensus 374 ~~~cs~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~ 450 (525)
T KOG1225|consen 374 ITECSPPSLCIAGVGR--RRVTHCAGTYCPLGESGGD-LQGRVPGDANSVDIQGLEPGDEYNCSVNTVAANIGSLPKDKS 450 (525)
T ss_pred ccccCCCceeeccccc--cccccccccccccccCCCc-cceeeccceeeeeeeeecCCcceeeehhhhhhhhccCCcccc
Confidence 3345777888888832 22334444443321 222 256788888999999999999999999999876666666666
Q ss_pred cccCCCCCcceEEEeeeCCeEEEEeeCCCCCcccEEEEEEEeCCCcceEEeccCCCccEEEecCCCCCCeEEEEE
Q psy4951 275 QAVYPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQV 349 (1189)
Q Consensus 275 ~~t~p~pP~~l~v~~~t~~sv~vsW~~p~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V 349 (1189)
..+...-+..+.+.....+++.+.|..|..+ ...+.+.|.................+.+..++|.|++.|.+.+
T Consensus 451 ~~~~~~~~g~~~v~~~~~~s~e~~g~~~s~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~c~~~~~~~ 524 (525)
T KOG1225|consen 451 ETTVLCWNGGLCVDGETESSLEVGGPCPSSG-TCGWEVRCGPCGNDGGVNAEPPPECTSYDRTGLGPCTEYEVSV 524 (525)
T ss_pred cceEeecCCceeeeeeeeccccccCCCCCcc-ccceEEEeeecCcccccccCCCCCCCCCCccCcccccceeccc
Confidence 6666778899999999999999999999863 6788888843332222333333356889999999999998865
No 57
>PF15102 TMEM154: TMEM154 protein family
Probab=93.71 E-value=0.13 Score=48.65 Aligned_cols=28 Identities=11% Similarity=0.206 Sum_probs=21.2
Q ss_pred ccccccCCCCccchhhHHHHHHHHHhCC
Q psy4951 998 LQDSIVETSRPIRLENFAEHYRIMSADS 1025 (1189)
Q Consensus 998 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 1025 (1189)
+.|........|.+++|.+|+.++..+.
T Consensus 114 iFEedtpsvmeiEmeeldkwm~s~n~n~ 141 (146)
T PF15102_consen 114 IFEEDTPSVMEIEMEELDKWMNSMNRNA 141 (146)
T ss_pred ccccCCcchhhhhHHHHHhHHHhhccCc
Confidence 4555667778899999999999885543
No 58
>KOG0613|consensus
Probab=93.66 E-value=1.9 Score=55.13 Aligned_cols=437 Identities=15% Similarity=0.159 Sum_probs=213.2
Q ss_pred ccCCCCCcceEEEeeeCCeEEEEeeCCC---CCcccEEEEEEEeCCCcceEEeccCCCccEEEecCCCCCCeEEEEEEEE
Q psy4951 276 AVYPKPPTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQVNSV 352 (1189)
Q Consensus 276 ~t~p~pP~~l~v~~~t~~sv~vsW~~p~---~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~ 352 (1189)
.-+..+|.+-....+...-+...|..+. +..+.+|.|+.+..+...|.....-. ...-.+..+. |.++|+++
T Consensus 137 e~pd~~~~~~~sv~~~~~~v~~~~~~~~~d~~~k~~~~iie~~~~g~s~~~~~l~~~-~~~s~~~~a~----~e~~v~~v 211 (1205)
T KOG0613|consen 137 EKPDPPPSNRESVLVHRARVLPAWRPPREDGGRKREEYIIERRQAGRSPWLKRLTQP-TDDSTDTDAH----YESRVRAV 211 (1205)
T ss_pred cCCCCCCCCccceeecCceecccccCCccCccceeecceEEEEeccCCCcccccccc-cCCcceeccc----cceeEEEE
Confidence 3344556666666777788899999887 33577899998887665554321111 1222222332 66666666
Q ss_pred EcCccCCCceeEE----eecCCCCccce-EEeecCcEEEEEeeCCCcc----eeEEEEEEEeeccCCCCcceEeeeecCC
Q psy4951 353 SYSVESAHPLQIN----HTISPNPATYV-AALVDASNVTLEFPRPEGR----IEYYLVTWRGIGPEATSTELFTKNVTND 423 (1189)
Q Consensus 353 ~~~g~s~~~~~~~----~~t~p~pp~~l-~~~~~~~sv~lsW~~p~g~----i~~Y~V~~~~~~~~~~~~~~~~~~~~~~ 423 (1189)
...|+..+..... ...++..+..- ........+.+.|..+.|+ +.+|.+... ...+.......+
T Consensus 212 ~s~gqp~~~~~~~~~g~~i~~~~~~~~s~t~e~s~~~i~~~l~~~~G~~~~~~~~~l~e~~---~~~~~~t~~i~~---- 284 (1205)
T KOG0613|consen 212 VSAGQPEPLERWEILGELIAPGSAPSMSVTLEASDRKIQLTLRAPRGPYSAHILGYLIEQR---KHKGGNTKTIQN---- 284 (1205)
T ss_pred EecCCCccchhhhhcccccCCCCccccccccchhheeeeEEeecCCCchHHHHhcchhhhc---ccCCCccccccc----
Confidence 5555554322221 11222333332 3445557888888877542 455555544 111111111111
Q ss_pred CCCCCCceEEEecCCCCCCeEEEEEEEEeCCccCcce----EEEEEcCC----CCccceEEEeeccCCCEEEEEEEcCC-
Q psy4951 424 PEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGVT----SLSARTMP----LIESEVLVVNNQQSTDSVTLRYTPQN- 494 (1189)
Q Consensus 424 ~~~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~~~s~~~----~~~~~t~P----~~p~~~~v~~~~~t~~sv~vsW~p~~- 494 (1189)
........++...-.++..|.+.|...-..+.+.+. ...+...| ..+....+... ..+.+.+.|.-..
T Consensus 285 -~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~--d~~~v~m~~~~~~~ 361 (1205)
T KOG0613|consen 285 -DGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTAR--DNTLVEMPTALSGT 361 (1205)
T ss_pred -cCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccc--cCcceeecccccCC
Confidence 122345566666777888888888887544433321 11122222 12233444433 6777888888211
Q ss_pred --CCCeeEEEEEEEcCC-CCeE-EEEecCCcceEEEeCCCCCCeEEEEEEEEeCCcCCCcEEEeeccC--C-CCCcceEE
Q psy4951 495 --SNHFDFYRFTLSEPD-IPVI-EKAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTPIQRHDRLY--P-EPITRINA 567 (1189)
Q Consensus 495 --~g~i~~Y~V~~~~~~-~~~~-~~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~~~~S~~~~~~~~t~--p-~~P~~l~v 567 (1189)
...+.+|...-.... ..+. ..........+.+.++.++..|..++.|.|.++............ + ..|..+.+
T Consensus 362 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~~~~~~~e~~~~~~~a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk 441 (1205)
T KOG0613|consen 362 QKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTIKDAGPGEGYFTRVPAVNKGGTEQTIAESTVSEEMPGTQPPKFKK 441 (1205)
T ss_pred cCCchheeecccccccccccccccccccccCcchhhhhcCcccccccccceeccCCcccccchhhcccccCCCCCccccc
Confidence 112445554332221 1121 122234466788899999999999999999876554443322111 1 11222211
Q ss_pred EEEe------CcEEEEEeeCCCCCCceEEEEEEcCCC-------eEEEeeccccEEEEcCCCCCCEEEEEEEEEeCCCcc
Q psy4951 568 TEIT------DTSVSLTWDSPRGEYNAFEVQYLNTEG-------FLIQNLTLHTSIVIGDLKPHRNYTFTVIVRSGTESS 634 (1189)
Q Consensus 568 ~~v~------~~sv~l~W~~p~g~i~~Y~V~~~~~~~-------~~~~~~~~~~~~~l~~L~p~t~Y~~~V~A~~~~g~~ 634 (1189)
.... ..++.+.-..+......-.+....... .............+.++..+..|.+..+-.++.+
T Consensus 442 ~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~l~r~~~tslLlk~~~~~~~A~~~~a~~~~~~k~-- 519 (1205)
T KOG0613|consen 442 DVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSVTLTRDVLTSLLLKVASLSDGAQYTRALRTLQGKP-- 519 (1205)
T ss_pred cccccccccCCcccccccCCCCccccceeEeeccCCcccccccccccccchhhheeeccCCCccchhhhhhhccCCCC--
Confidence 1111 112222211111000000111111000 1111223455667888999999988777666553
Q ss_pred eeeeccceeEEEEeccCCCCCcccccccccceeecccccceeeeecccceEEEEecCCCCCCCCcceEEEEEEeccCccc
Q psy4951 635 VLRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFFQAEKFHPIDVQPGDITFEWSLPGSEQNGVIRKFTISYAQEAACN 714 (1189)
Q Consensus 635 ~~~~s~~~s~~~~T~~~~P~~~~~~~~~~~~~~~~~~~~~l~~~~~~~tsv~l~W~~P~~~~ng~i~~Y~i~y~~~~~~~ 714 (1189)
.........-....+|. .+.-...-.+...|.|.+-..+..-.-..|.+.-... +.+
T Consensus 520 ---~~~~~~~l~~~~s~a~~-------------------~~~~~~~~~g~p~l~~~~~~~E~~~vs~~~~~a~~ql-g~~ 576 (1205)
T KOG0613|consen 520 ---VPSLDRKLPAAKSSAPK-------------------PIHTQENQPGTPTLEWEPKPAEASKVSLHYASATRQL-GVW 576 (1205)
T ss_pred ---CCcccccccccccCCcc-------------------cccccccCCCCcccccCCCcccccccchhhhhhhhhc-cCC
Confidence 11111111111111221 1111222345566777655444221112333221211 111
Q ss_pred ceeeeeeeeecCcceeeEEeC-CCCCCcccceEEEEEEEEEecCCCCcccc
Q psy4951 715 HNQRLHAKFQLPRVNSKKLKG-WPGTLRTDWRSYIYKLQAELGLHMEPETI 764 (1189)
Q Consensus 715 ~~~~~~~~~~~~~~~~~~i~~-~pg~~~~~~t~Y~~~V~A~~~~G~g~~s~ 764 (1189)
.. ... ...+..++-+ .|+ +.|.+++.+.+..|.++++.
T Consensus 577 ~~-----~~~-r~gtt~t~~~~~p~------~~~~~t~~~k~~~gE~~ps~ 615 (1205)
T KOG0613|consen 577 RV-----PES-RPGTTETIGSILPG------HEYHVTIKAKNELGESRPSS 615 (1205)
T ss_pred cc-----ccc-CCCccccccccccc------ccceeehhhhhcccccCCCC
Confidence 11 011 2226677888 999 99999999999999998774
No 59
>KOG4806|consensus
Probab=93.08 E-value=6.8 Score=42.58 Aligned_cols=107 Identities=15% Similarity=0.136 Sum_probs=69.6
Q ss_pred EeCCCCCCeEEEEEEEEeCCcCCCcEEEee------ccCCCCCcceEEEEEe--CcEEEEEeeCCCCCCceEEEEEEcCC
Q psy4951 526 FNNLTPGKLYNFTVWTVADGVLSTPIQRHD------RLYPEPITRINATEIT--DTSVSLTWDSPRGEYNAFEVQYLNTE 597 (1189)
Q Consensus 526 l~~L~p~t~Y~v~V~a~~~~~~S~~~~~~~------~t~p~~P~~l~v~~v~--~~sv~l~W~~p~g~i~~Y~V~~~~~~ 597 (1189)
-.++.++..|..+++..|+...-..+.+.. ...|.-|++-++..+. =++.+|.|......-..|=|+.....
T Consensus 288 Qfvv~~~~~~~~rf~~~ndde~~~~v~V~aSt~~t~~~~P~LP~dTtVk~v~r~CSsAtIaW~gs~d~~~kyCIy~~~~~ 367 (454)
T KOG4806|consen 288 QFVVLPGERYLMRFEPSNDDEALQKVMVAASTEATFRDLPELPQDTTVKNVRRRCSSATIAWNGSPDEELKYCIYVFNLP 367 (454)
T ss_pred EEEecCCCceEEEEEecCCchhhheeEeeeecccccCcCCCCCCCceEeeeccccchheeeeccCcchheeEEEEEeccc
Confidence 446778999999999988743333333322 3346778888887765 56899999976544456766655433
Q ss_pred Ce--------E--------------EEee----------ccccEEEEcCCCCCCEEEEEEEEEeCCC
Q psy4951 598 GF--------L--------------IQNL----------TLHTSIVIGDLKPHRNYTFTVIVRSGTE 632 (1189)
Q Consensus 598 ~~--------~--------------~~~~----------~~~~~~~l~~L~p~t~Y~~~V~A~~~~g 632 (1189)
.. . .... ..-..-+|.||.||..|.+-|.|.-..|
T Consensus 368 ~~e~~v~~~~N~C~g~~~~~~s~~v~c~y~hs~~~q~~~~~i~teTI~gL~PgssYlldv~a~~~~g 434 (454)
T KOG4806|consen 368 QRERSVVDFTNYCMGFVPKRVSQYVYCEYMHSRERQQSPDNIETETILGLMPGSSYLLDVTANLSMG 434 (454)
T ss_pred chhhhhhhhhccccCccccceeEEEeEEEecChhhhcchhhhhhhhhcccccCceEEEEEEEcccCC
Confidence 20 0 0000 0112346899999999999999987666
No 60
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=91.40 E-value=0.086 Score=53.00 Aligned_cols=48 Identities=17% Similarity=0.191 Sum_probs=38.7
Q ss_pred CCCCcceEEeHHHHHHHhcCCCCCCHHHHHHHHHhCccccccChhhhhhHHHHH
Q psy4951 1094 SPRRSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCL 1147 (1189)
Q Consensus 1094 ~~~rtg~fi~~~~~~~~~~~~~~~dv~~~v~~~r~~R~~~v~~~~Qy~f~y~~~ 1147 (1189)
+-.|||+||++..+ +. +..++.+++..+|++|++++ +.+|+.|+.+..
T Consensus 108 GigRSgt~~a~yL~----~~-~~~s~~eAi~~vr~~R~~~i-~~~Q~~~l~~~~ 155 (166)
T PTZ00242 108 GLGRAPILVALALV----EY-GGMEPLDAVGFVREKRKGAI-NQTQLQFLKKYK 155 (166)
T ss_pred CCCHHHHHHHHHHH----Hh-CCCCHHHHHHHHHHHCCCCc-hHHHHHHHHHHH
Confidence 44499999999532 22 34699999999999999999 489999997765
No 61
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=89.47 E-value=3 Score=38.06 Aligned_cols=81 Identities=19% Similarity=0.229 Sum_probs=61.4
Q ss_pred cCCCCCcceEEEeeeCCeEEEEeeCCCCCc-ccEEEEEEEeCCCcceEEeccCC--CccE-----EEec--CCCCCCeEE
Q psy4951 277 VYPKPPTNLTLEKTSSNAVLVKWKEPVGSI-FTEYSIRYRTEEDKTWVRLPNVG--TSLE-----AEVT--DMVPGEKCM 346 (1189)
Q Consensus 277 t~p~pP~~l~v~~~t~~sv~vsW~~p~~g~-i~~Y~V~~~~~~~~~~~~~~~~~--~~~~-----~~i~--~L~p~t~Y~ 346 (1189)
.+|+.|.++.+.......++.-|++...+. -..|++.|...+ ..+.+.+... ...+ +.+. +..-.+.|.
T Consensus 6 ~~p~~P~~~~C~S~~~etftC~W~~g~~~~l~~~y~L~Y~~~~-~~~~eCp~~~~~~~ns~~~~~C~F~~~~t~lf~~y~ 84 (104)
T PF09067_consen 6 LPPEKPENLKCFSREMETFTCFWEPGSEGNLPTNYTLFYKKEG-EEWKECPDYSTSGPNSTVRHICYFPKSDTSLFVPYC 84 (104)
T ss_dssp HHCCCCEEEEEEBSSSS-EEEEEEEESSSTSTCEEEEEEEETT-SEEEEESESSTTETTEEEEEEEEE-CCGCSSSSEEE
T ss_pred cCCCCCccCccCCCCCCcEEEEeeCCCCCCCCCcEEEEEEeCC-CCCccCCCeEecCCCCceeEEEEcCCCCeEEEEEEE
Confidence 468889999999999999999999988432 455999999876 6777776432 2244 6665 788899999
Q ss_pred EEEEEEEcCccC
Q psy4951 347 IQVNSVSYSVES 358 (1189)
Q Consensus 347 ~~V~A~~~~g~s 358 (1189)
|+|.|.+..|..
T Consensus 85 i~V~a~~~~~~~ 96 (104)
T PF09067_consen 85 IQVEATNALGSI 96 (104)
T ss_dssp EEEEEEETTEEE
T ss_pred EEEEeccCCCcE
Confidence 999998876643
No 62
>KOG4152|consensus
Probab=89.35 E-value=2.5 Score=48.03 Aligned_cols=66 Identities=15% Similarity=0.192 Sum_probs=46.7
Q ss_pred cCCCCCCeEEEEEEEEEcCccCCCceeEEee----cCCCCccceEEeecCcEEEEEeeCCC----cceeEEEEE
Q psy4951 337 TDMVPGEKCMIQVNSVSYSVESAHPLQINHT----ISPNPATYVAALVDASNVTLEFPRPE----GRIEYYLVT 402 (1189)
Q Consensus 337 ~~L~p~t~Y~~~V~A~~~~g~s~~~~~~~~~----t~p~pp~~l~~~~~~~sv~lsW~~p~----g~i~~Y~V~ 402 (1189)
..|-+|+.|.|+|.|++..|.+..+...... ..|..|..+....+-..+.+.|.+|. |.|..|..+
T Consensus 652 ~~lv~Gq~yrfrV~aIng~G~gp~s~i~~~kTc~pG~P~apS~~ri~k~~eGi~l~weppt~p~sg~Iieys~y 725 (830)
T KOG4152|consen 652 TSLVTGQAYRFRVTAINGKGPGPASTILKLKTCAPGKPTAPSGARIKKTIEGISLVWEPPTKPGSGTIIEYSPY 725 (830)
T ss_pred cccccccceeeeeeeeeccCCCchhhheeeeeccCCCCCCcccccccccccceeecccCCCCCCCcceEEeehh
Confidence 5789999999999999998888755443322 23445555556666789999999983 445555544
No 63
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=89.22 E-value=7.7 Score=47.44 Aligned_cols=124 Identities=8% Similarity=-0.050 Sum_probs=67.0
Q ss_pred CceEEEecCCCCCCeEEEEEEEEeCC-ccCcce-EEE-EEcCCCCccceEE--EeeccCCCEEEEEEE-cCCCCCeeEEE
Q psy4951 429 KHVHILIDQLTPGVKYQFTIRTVSYN-LESGVT-SLS-ARTMPLIESEVLV--VNNQQSTDSVTLRYT-PQNSNHFDFYR 502 (1189)
Q Consensus 429 ~~~~~~i~~L~p~t~Y~v~V~a~~~~-~~s~~~-~~~-~~t~P~~p~~~~v--~~~~~t~~sv~vsW~-p~~~g~i~~Y~ 502 (1189)
..+.+.+.+|.+ ..|.++|+|.|.. ..+.+. ... ....|..|++..+ ... .-.-.+.+.|- |...-.+..-.
T Consensus 658 ~~~~~~~~gi~~-GqY~i~VrAiN~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~-~it~~~~l~v~dPt~~~d~~~se 735 (952)
T COG4733 658 SAAGFDVEGIPA-GQYAIRVRAINVFEPNSPDATAYEFALNGKKVPPPKAMIYDAV-IITLVIRLVVGDPTGAVDITSTE 735 (952)
T ss_pred cccceeecCcCc-cceEEEEEEeeccCCCCCCcceeEEEecCCCCCCCcccccceE-EEEeeeeEEEecCCcceEEeeee
Confidence 457899999999 5999999999864 344444 222 2223333333222 111 12345567777 54322233333
Q ss_pred EEEEcCCCCeEEEEecCCc--ceEEEeCCCCCCeEEEEEEEEeCCcCCCcEEEe
Q psy4951 503 FTLSEPDIPVIEKAANDTD--RKVTFNNLTPGKLYNFTVWTVADGVLSTPIQRH 554 (1189)
Q Consensus 503 V~~~~~~~~~~~~~~~~~~--~~~~l~~L~p~t~Y~v~V~a~~~~~~S~~~~~~ 554 (1189)
+++............-++. ....-.+|.+|..|.|++++++..+.+.+..+.
T Consensus 736 i~~s~~~d~~~~Ar~LG~~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~~~ev~ 789 (952)
T COG4733 736 IRSAVIADGNFQARSLGNLNYPGLFSVGIQAGLTFWFRNRNVDLVGNNDKWEVY 789 (952)
T ss_pred eeeeccccchhHHhhhhccccccccccCcCCCceEEEEeeecccccccccceEc
Confidence 4443322111100000111 111126899999999999999987777666543
No 64
>COG4733 Phage-related protein, tail component [Function unknown]
Probab=88.53 E-value=5.1 Score=48.88 Aligned_cols=164 Identities=13% Similarity=0.150 Sum_probs=89.2
Q ss_pred CCcceEEEeee-------CCeEEEEeeCCCCCcccEEEEEEEeCCCcceEEeccCCCccEEEecCCCCCCeEEEEEEEEE
Q psy4951 281 PPTNLTLEKTS-------SNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQVNSVS 353 (1189)
Q Consensus 281 pP~~l~v~~~t-------~~sv~vsW~~p~~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~ 353 (1189)
+|.++.+.+.. .+...+.|.+ -.+.+.|.......|....... ...+.+.||.+| +|.++|+|++
T Consensus 609 ~tt~v~~~~~~y~~qg~~~t~~vv~ge~------f~~~~a~~a~~~~~~vta~rt~-~~~~~~~gi~~G-qY~i~VrAiN 680 (952)
T COG4733 609 PTTNVSIDSFLNLVQGLATTLLKVGGEA------FLAAWAYEAGWDGNWITAPRTS-AAGFDVEGIPAG-QYAIRVRAIN 680 (952)
T ss_pred CceeeecccchhhhhcccccceeecchH------HHHHHHhhcccCCceEeccccc-ccceeecCcCcc-ceEEEEEEee
Confidence 45666654322 2344555543 3344445444333555444433 388999999995 8999999999
Q ss_pred cCccCCCce-eEEe--ecCCCCccc---eEEeecCcEEEEEeeCCCccee--EEEEEEEeeccCCCCcceEeeeecCCCC
Q psy4951 354 YSVESAHPL-QINH--TISPNPATY---VAALVDASNVTLEFPRPEGRIE--YYLVTWRGIGPEATSTELFTKNVTNDPE 425 (1189)
Q Consensus 354 ~~g~s~~~~-~~~~--~t~p~pp~~---l~~~~~~~sv~lsW~~p~g~i~--~Y~V~~~~~~~~~~~~~~~~~~~~~~~~ 425 (1189)
.-+....+. ...+ ..+..||.. +....-.-.+++.|--|.+.++ .-.+++. ...+.+. . ...-..
T Consensus 681 ~~g~~~~~a~s~~f~i~g~~~Ppp~~~t~~a~~it~~~~l~v~dPt~~~d~~~sei~~s---~~~d~~~-~-Ar~LG~-- 753 (952)
T COG4733 681 VFEPNSPDATAYEFALNGKKVPPPKAMIYDAVIITLVIRLVVGDPTGAVDITSTEIRSA---VIADGNF-Q-ARSLGN-- 753 (952)
T ss_pred ccCCCCCCcceeEEEecCCCCCCCcccccceEEEEeeeeEEEecCCcceEEeeeeeeee---ccccchh-H-Hhhhhc--
Confidence 888777555 2222 122222221 1223334567788887755433 3333333 1111110 0 000000
Q ss_pred CCCCceEEEecCCCCCCeEEEEEEEEeCCccCcceE
Q psy4951 426 DKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGVTS 461 (1189)
Q Consensus 426 ~~~~~~~~~i~~L~p~t~Y~v~V~a~~~~~~s~~~~ 461 (1189)
.......-.+|.||..|.|++++++..|.+.+..
T Consensus 754 --~~~~~~~~~~i~~g~~~~F~~R~Vn~vG~~~~~e 787 (952)
T COG4733 754 --LNYPGLFSVGIQAGLTFWFRNRNVDLVGNNDKWE 787 (952)
T ss_pred --cccccccccCcCCCceEEEEeeecccccccccce
Confidence 0111122269999999999999999888776655
No 65
>KOG1225|consensus
Probab=86.57 E-value=0.84 Score=53.74 Aligned_cols=142 Identities=18% Similarity=0.123 Sum_probs=99.8
Q ss_pred CCCEEEEEEEcCCCCCeeEEEEEEEcC--CCCeEEEEecCCcceEEEeCCCCCCeEEEEEEEEeCCcCCCcEEEeeccCC
Q psy4951 482 STDSVTLRYTPQNSNHFDFYRFTLSEP--DIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTPIQRHDRLYP 559 (1189)
Q Consensus 482 t~~sv~vsW~p~~~g~i~~Y~V~~~~~--~~~~~~~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~~~~S~~~~~~~~t~p 559 (1189)
+..++.+.|... .....|...+... ++......+......+.+..|.|+..|.++++++-....+.+......+..
T Consensus 378 s~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~ 455 (525)
T KOG1225|consen 378 SPPSLCIAGVGR--RRVTHCAGTYCPLGESGGDLQGRVPGDANSVDIQGLEPGDEYNCSVNTVAANIGSLPKDKSETTVL 455 (525)
T ss_pred CCCceeeccccc--cccccccccccccccCCCccceeeccceeeeeeeeecCCcceeeehhhhhhhhccCCcccccceEe
Confidence 667777777721 1233444433322 121224456778889999999999999999999876555555555555666
Q ss_pred CCCcceEEEEEeCcEEEEEeeCCCCCCceEEEEEEcCCC---eEEEeeccccEEEEcCCCCCCEEEEEE
Q psy4951 560 EPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEG---FLIQNLTLHTSIVIGDLKPHRNYTFTV 625 (1189)
Q Consensus 560 ~~P~~l~v~~v~~~sv~l~W~~p~g~i~~Y~V~~~~~~~---~~~~~~~~~~~~~l~~L~p~t~Y~~~V 625 (1189)
.-+..+.+.....+++.+.|..|......+.+.+..... .........+.+..++|.|++.|.+.+
T Consensus 456 ~~~g~~~v~~~~~~s~e~~g~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~c~~~~~~~ 524 (525)
T KOG1225|consen 456 CWNGGLCVDGETESSLEVGGPCPSSGTCGWEVRCGPCGNDGGVNAEPPPECTSYDRTGLGPCTEYEVSV 524 (525)
T ss_pred ecCCceeeeeeeeccccccCCCCCccccceEEEeeecCcccccccCCCCCCCCCCccCcccccceeccc
Confidence 678899999999999999999999878889998833221 122222356778899999999998875
No 66
>PF07353 Uroplakin_II: Uroplakin II; InterPro: IPR009952 This family contains uroplakin II, which is approximately 180 residues long and seems to be restricted to mammals. Uroplakin II is an integral membrane protein, and is one of the components of the apical plaques of mammalian urothelium formed by the asymmetric unit membrane - this is believed to play a role in strengthening the urothelial apical surface to prevent the cells from rupturing during bladder distension [].; GO: 0016044 cellular membrane organization, 0030176 integral to endoplasmic reticulum membrane
Probab=83.63 E-value=4.2 Score=38.91 Aligned_cols=74 Identities=14% Similarity=0.188 Sum_probs=39.8
Q ss_pred ccCceecCCCCCCCEEEEEEEEEeCCCCCcccccccceeccccccccc-CC--CCCCCCEEEeehHHHHHHHHHHHHhh
Q psy4951 900 GKTGYCNGPLKSGSTYKVKIRAFTTPDKFTDTAYSFPISTGWYNFALL-GQ--DQDNTPLVVGITIPFILVLILCMTVF 975 (1189)
Q Consensus 900 ~~~~~~n~~L~p~~~Y~~~v~a~t~~~~~~~~~~s~p~~~~~~~~~~~-~~--~~~~~~ii~~~~~~~~~~~~~~~~~~ 975 (1189)
....|++++|.||++|.+....-+... +.+....+.++......+. .. ......+++.+++++.-+++++++|+
T Consensus 100 rlsaYqVtNL~pGTkY~isY~Vtkgts--tESS~~i~msT~n~~~~esI~~gmarTGgMvViTvlLSvaMFllvVG~Ii 176 (184)
T PF07353_consen 100 RLSAYQVTNLQPGTKYYISYLVTKGTS--TESSNEIPMSTLNRKNMESIDLGMARTGGMVVITVLLSVAMFLLVVGLII 176 (184)
T ss_pred cceeEEeeccCCCcEEEEEEEEecCcc--ceecceeccccccccccccccccccccCCeEEEeeHhhHHHHHHHHHHHH
Confidence 567899999999999999998855532 2222233444321111111 11 11223355556565555555555443
No 67
>PF02439 Adeno_E3_CR2: Adenovirus E3 region protein CR2; InterPro: IPR003470 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D adenovirus) 49 kDa protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=80.13 E-value=0.54 Score=33.12 Aligned_cols=28 Identities=11% Similarity=0.358 Sum_probs=14.9
Q ss_pred CCEEEeehHHHHHHHHHHHHh-hheeecC
Q psy4951 954 TPLVVGITIPFILVLILCMTV-FILRSRR 981 (1189)
Q Consensus 954 ~~ii~~~~~~~~~~~~~~~~~-~~~~~~r 981 (1189)
.+++++++++++++++.+... +|+||.|
T Consensus 6 IaIIv~V~vg~~iiii~~~~YaCcykk~~ 34 (38)
T PF02439_consen 6 IAIIVAVVVGMAIIIICMFYYACCYKKHR 34 (38)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 456667777665555444443 4444433
No 68
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=78.44 E-value=3.1 Score=40.00 Aligned_cols=25 Identities=12% Similarity=0.337 Sum_probs=13.6
Q ss_pred ccchhhHHHHHHHHHhCCCcchHHHHHH
Q psy4951 1008 PIRLENFAEHYRIMSADSDFRFSEEFEE 1035 (1189)
Q Consensus 1008 ~i~~~~~~~~~~~~~~~~~~~~~~E~~~ 1035 (1189)
+.....|.++-..+..+. +.+||+.
T Consensus 92 ay~~n~~~~~w~~l~Gk~---~~~~y~s 116 (154)
T PF04478_consen 92 AYRSNKLTKWWYSLLGKK---ISDKYES 116 (154)
T ss_pred EEcCchHHHHHHHHhCCc---ccccccc
Confidence 344455666555554443 3667765
No 69
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=78.18 E-value=2.1e+02 Score=36.73 Aligned_cols=73 Identities=18% Similarity=0.230 Sum_probs=43.2
Q ss_pred cccceEEEEecCCCCCC-CCcceEEEEEEeccCcc----------cceeeeeeeeecCcceeeEEe--C-C--CCCCccc
Q psy4951 680 VQPGDITFEWSLPGSEQ-NGVIRKFTISYAQEAAC----------NHNQRLHAKFQLPRVNSKKLK--G-W--PGTLRTD 743 (1189)
Q Consensus 680 ~~~tsv~l~W~~P~~~~-ng~i~~Y~i~y~~~~~~----------~~~~~~~~~~~~~~~~~~~i~--~-~--pg~~~~~ 743 (1189)
.....|.|+|+.|-.+. .|...+|.|.|...-.. .....+. .-..++...+.+. + . .+
T Consensus 766 ~~~~~v~LsWTAPG~d~D~G~a~~y~ir~s~~~~~l~~~f~~a~~vn~~~~~-P~~ags~e~~~f~~~~~~~~~~----- 839 (863)
T TIGR00868 766 FQGDNIILTWTAPGDVLDHGRADRYIIRISTSILDLRDDFNDATQVNTTDLI-PKEANSKEVFVFKPEGIPIENG----- 839 (863)
T ss_pred ecCCEEEEEeeCCCccCCCCccceEEEEecCCHHHHHhhhccccccccCCcC-CCCCCceeEEEEeCCcccccCC-----
Confidence 34556999999998654 68999999998332111 0000000 0011233333333 3 2 57
Q ss_pred ceEEEEEEEEEecCCC
Q psy4951 744 WRSYIYKLQAELGLHM 759 (1189)
Q Consensus 744 ~t~Y~~~V~A~~~~G~ 759 (1189)
+.|.|-|+|.+..|.
T Consensus 840 -~~~~~ai~a~d~~~~ 854 (863)
T TIGR00868 840 -TDLFIAVQAIDKANL 854 (863)
T ss_pred -eEEEEEEEEEccccc
Confidence 899999999998764
No 70
>PF08693 SKG6: Transmembrane alpha-helix domain; InterPro: IPR014805 SKG6 and AXL2 are membrane proteins that show polarised intracellular localisation [, ]. This entry represents the highly conserved transmembrane alpha-helical domain found in these proteins [, ]. The full-length AXL2 protein has a negative regulatory function in cytokinesis [].
Probab=73.17 E-value=4.3 Score=29.42 Aligned_cols=30 Identities=17% Similarity=0.470 Sum_probs=18.1
Q ss_pred CCCCEEEeehHHHHHHHHHHHHhhh-eeecC
Q psy4951 952 DNTPLVVGITIPFILVLILCMTVFI-LRSRR 981 (1189)
Q Consensus 952 ~~~~ii~~~~~~~~~~~~~~~~~~~-~~~~r 981 (1189)
....|-+|+++.+.+++++++++++ ++||+
T Consensus 9 ~~vaIa~~VvVPV~vI~~vl~~~l~~~~rR~ 39 (40)
T PF08693_consen 9 NTVAIAVGVVVPVGVIIIVLGAFLFFWYRRK 39 (40)
T ss_pred ceEEEEEEEEechHHHHHHHHHHhheEEecc
Confidence 3445777777777666666655554 44443
No 71
>PLN02533 probable purple acid phosphatase
Probab=72.70 E-value=17 Score=42.92 Aligned_cols=69 Identities=13% Similarity=0.174 Sum_probs=44.4
Q ss_pred CCCCCcceEEEeeeCCeEEEEeeCCCCCcccEEEEEEEeCCCcceEE-------ec-----cCCCccEEEecCCCCCCeE
Q psy4951 278 YPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVR-------LP-----NVGTSLEAEVTDMVPGEKC 345 (1189)
Q Consensus 278 ~p~pP~~l~v~~~t~~sv~vsW~~p~~g~i~~Y~V~~~~~~~~~~~~-------~~-----~~~~~~~~~i~~L~p~t~Y 345 (1189)
.+..|+.+.+.-.+.++++|+|....... -.|+|....+..... .. ..+-...+.|++|+|+|.|
T Consensus 40 ~~~~P~qvhls~~~~~~m~V~W~T~~~~~---~~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p~T~Y 116 (427)
T PLN02533 40 DPTHPDQVHISLVGPDKMRISWITQDSIP---PSVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKPNTVY 116 (427)
T ss_pred CCCCCceEEEEEcCCCeEEEEEECCCCCC---CEEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCCCCEE
Confidence 45568888887777899999999875311 246665432211000 00 0112246789999999999
Q ss_pred EEEE
Q psy4951 346 MIQV 349 (1189)
Q Consensus 346 ~~~V 349 (1189)
.++|
T Consensus 117 ~Yrv 120 (427)
T PLN02533 117 YYKC 120 (427)
T ss_pred EEEE
Confidence 9998
No 72
>PTZ00393 protein tyrosine phosphatase; Provisional
Probab=71.41 E-value=2 Score=45.16 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=37.2
Q ss_pred CCCCcceEEeHHHHHHHhcCCCCCCHHHHHHHHHhCccccccChhhhhhHHHHHH
Q psy4951 1094 SPRRSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLL 1148 (1189)
Q Consensus 1094 ~~~rtg~fi~~~~~~~~~~~~~~~dv~~~v~~~r~~R~~~v~~~~Qy~f~y~~~~ 1148 (1189)
...|||+++|+..+ + ...+..+.+..+|+.|++++ +..|+.|+.+.--
T Consensus 180 GlGRTGtl~AayLI----~--~GmspeeAI~~VR~~RPgAI-n~~Q~~fL~~y~~ 227 (241)
T PTZ00393 180 GLGRAPVLASIVLI----E--FGMDPIDAIVFIRDRRKGAI-NKRQLQFLKAYKK 227 (241)
T ss_pred CCCHHHHHHHHHHH----H--cCCCHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Confidence 33499999888432 2 23689999999999999999 4789999876544
No 73
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=71.16 E-value=2.6 Score=43.11 Aligned_cols=53 Identities=26% Similarity=0.095 Sum_probs=44.3
Q ss_pred CcceEEeHHHHHHHhcCCCCCCHHHHHHHHHhCccccccChhhhhhHHHHHHHHHhc
Q psy4951 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEG 1153 (1189)
Q Consensus 1097 rtg~fi~~~~~~~~~~~~~~~dv~~~v~~~r~~R~~~v~~~~Qy~f~y~~~~~~~~~ 1153 (1189)
||||+||...++ ..+....-+++..+|..|++++.+..|++|..+.....-..
T Consensus 118 RSgtviaA~lm~----~~~~~~~~~~i~~~~~~r~~~v~~~~q~~~~~e~~~~~~~~ 170 (180)
T COG2453 118 RSGTVIAAYLML----YGGLSLADEAIAVKRRRRPGAVVTEIQHLFELEQELFRKKE 170 (180)
T ss_pred hHHHHHHHHHHH----HcCCCCHHHHHHHHHhcCCcccccHHHHHHHHHHHHHHhhc
Confidence 999999995444 66777888999999999999999999999998887655444
No 74
>PLN02533 probable purple acid phosphatase
Probab=71.15 E-value=34 Score=40.43 Aligned_cols=68 Identities=12% Similarity=0.157 Sum_probs=39.5
Q ss_pred CCCCccceEEEeeccCCCEEEEEEEcCC-CCCeeEEEEEEEcCCCCe------EEEE-------ecCCcceEEEeCCCCC
Q psy4951 467 MPLIESEVLVVNNQQSTDSVTLRYTPQN-SNHFDFYRFTLSEPDIPV------IEKA-------ANDTDRKVTFNNLTPG 532 (1189)
Q Consensus 467 ~P~~p~~~~v~~~~~t~~sv~vsW~p~~-~g~i~~Y~V~~~~~~~~~------~~~~-------~~~~~~~~~l~~L~p~ 532 (1189)
.+..|..+.+... +.+++.|+|.-.. ... .|.|....+.. .... .++-.....|++|+|+
T Consensus 40 ~~~~P~qvhls~~--~~~~m~V~W~T~~~~~~----~V~yG~~~~~l~~~a~g~~~~~~~~~~~~~g~iH~v~l~~L~p~ 113 (427)
T PLN02533 40 DPTHPDQVHISLV--GPDKMRISWITQDSIPP----SVVYGTVSGKYEGSANGTSSSYHYLLIYRSGQINDVVIGPLKPN 113 (427)
T ss_pred CCCCCceEEEEEc--CCCeEEEEEECCCCCCC----EEEEecCCCCCcceEEEEEEEEeccccccCCeEEEEEeCCCCCC
Confidence 3445666777654 6889999999322 222 24443321110 0000 0112346789999999
Q ss_pred CeEEEEEE
Q psy4951 533 KLYNFTVW 540 (1189)
Q Consensus 533 t~Y~v~V~ 540 (1189)
|.|.++|-
T Consensus 114 T~Y~Yrvg 121 (427)
T PLN02533 114 TVYYYKCG 121 (427)
T ss_pred CEEEEEEC
Confidence 99999984
No 75
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=69.10 E-value=25 Score=28.81 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=19.7
Q ss_pred EEEEcCCCCCCEEEEEEEEEeCCC
Q psy4951 609 SIVIGDLKPHRNYTFTVIVRSGTE 632 (1189)
Q Consensus 609 ~~~l~~L~p~t~Y~~~V~A~~~~g 632 (1189)
.+.+++|.|| .|+|.|+|.+..|
T Consensus 30 ~~~~~~L~~G-~Y~l~V~a~~~~~ 52 (66)
T PF07495_consen 30 SISYTNLPPG-KYTLEVRAKDNNG 52 (66)
T ss_dssp EEEEES--SE-EEEEEEEEEETTS
T ss_pred EEEEEeCCCE-EEEEEEEEECCCC
Confidence 8999999999 7999999999887
No 76
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=68.98 E-value=79 Score=28.53 Aligned_cols=79 Identities=16% Similarity=0.103 Sum_probs=53.6
Q ss_pred CCcceEEEeeeCCeEEEEeeCCCCC-cccEEEEEEEeCCCcceEEecc---C-CCccEEEecCCCC----CCeEEEEEEE
Q psy4951 281 PPTNLTLEKTSSNAVLVKWKEPVGS-IFTEYSIRYRTEEDKTWVRLPN---V-GTSLEAEVTDMVP----GEKCMIQVNS 351 (1189)
Q Consensus 281 pP~~l~v~~~t~~sv~vsW~~p~~g-~i~~Y~V~~~~~~~~~~~~~~~---~-~~~~~~~i~~L~p----~t~Y~~~V~A 351 (1189)
+|+||...-.+...+..+|.+.... .-..|.+.|+........+... . +....+.+..... ...|.|.|.+
T Consensus 1 ~~~nlsC~~~~~~~m~CtW~~g~~~~~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V~~ 80 (99)
T PF09240_consen 1 KPQNLSCFIYNLEYMNCTWEPGKEAPPDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCVNG 80 (99)
T ss_dssp S-EEEEEEEETTTEEEEEEECCTTCSTTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEEEE
T ss_pred CCeeCEEEEECCEEEEEEECCCCCCCCcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEEEe
Confidence 4789999888899999999986532 3479999999875443333322 1 2245677766665 3479999888
Q ss_pred EEcCccCC
Q psy4951 352 VSYSVESA 359 (1189)
Q Consensus 352 ~~~~g~s~ 359 (1189)
.+..|.-.
T Consensus 81 ss~~~~i~ 88 (99)
T PF09240_consen 81 SSSAGSIR 88 (99)
T ss_dssp EETTEEEE
T ss_pred ccCCCccC
Confidence 77666544
No 77
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=68.48 E-value=16 Score=29.94 Aligned_cols=44 Identities=25% Similarity=0.406 Sum_probs=28.3
Q ss_pred EEEEEEEcCCCCeEEEEecCCcceEEEeCCCCCCeEEEEEEEEeCCc
Q psy4951 500 FYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGV 546 (1189)
Q Consensus 500 ~Y~V~~~~~~~~~~~~~~~~~~~~~~l~~L~p~t~Y~v~V~a~~~~~ 546 (1189)
.|+-.+...+..|... ......+.+++|.|| .|+|.|+|.+..+
T Consensus 9 ~Y~Y~l~g~d~~W~~~--~~~~~~~~~~~L~~G-~Y~l~V~a~~~~~ 52 (66)
T PF07495_consen 9 RYRYRLEGFDDEWITL--GSYSNSISYTNLPPG-KYTLEVRAKDNNG 52 (66)
T ss_dssp EEEEEEETTESSEEEE--SSTS-EEEEES--SE-EEEEEEEEEETTS
T ss_pred EEEEEEECCCCeEEEC--CCCcEEEEEEeCCCE-EEEEEEEEECCCC
Confidence 4555555555555433 222239999999999 9999999998644
No 78
>PF04478 Mid2: Mid2 like cell wall stress sensor; InterPro: IPR007567 This family represents a region near the C terminus of Mid2, which contains a transmembrane region. The remainder of the protein sequence is serine-rich and of low complexity, and is therefore impossible to align accurately. Mid2 is thought to act as a mechanosensor of cell wall stress. The C-terminal cytoplasmic region of Mid2 is known to interact with Rom2, a guanine nucleotide exchange factor (GEF) for Rho1, which is part of the cell wall integrity signalling pathway [].
Probab=67.84 E-value=3.4 Score=39.69 Aligned_cols=12 Identities=17% Similarity=0.301 Sum_probs=8.2
Q ss_pred CEEEeehHHHHH
Q psy4951 955 PLVVGITIPFIL 966 (1189)
Q Consensus 955 ~ii~~~~~~~~~ 966 (1189)
.+++||++|+.+
T Consensus 49 nIVIGvVVGVGg 60 (154)
T PF04478_consen 49 NIVIGVVVGVGG 60 (154)
T ss_pred cEEEEEEecccH
Confidence 477888777644
No 79
>PF09067 EpoR_lig-bind: Erythropoietin receptor, ligand binding; InterPro: IPR015152 Members of this entry include the growth hormone and erythropoietin receptors. The latter interacts with erythropoietin (EPO), with subsequent initiation of the downstream chain of events associated with binding of EPO to the receptor, including EPO-induced erythroblast proliferation and differentiation through induction of the JAK2/STAT5 signalling cascade. The domain adopts a secondary structure composed of a short amino-terminal helix, followed by two beta-sandwich regions []. ; PDB: 3NCB_B 3NCF_B 3NCE_B 3N0P_B 3NCC_B 1BP3_B 3N06_B 3MZG_B 3D48_R 1F6F_C ....
Probab=66.66 E-value=22 Score=32.51 Aligned_cols=81 Identities=15% Similarity=0.106 Sum_probs=53.3
Q ss_pred CCCCCccceEEEecCCCCeEEEEeecCCCCC-cceEEEEeeehhhHhHhhhhhhccccccCCCCCceeeeeecccCCCce
Q psy4951 78 PEPLPVLDLTAVMDDKTGDLFISWKPDNASY-QDMYKISIKSILLEEEHQKQFLMGFLGDCDNGSKISYVEIETLNGDSN 156 (1189)
Q Consensus 78 ~~p~~P~~l~~~~~~s~~sv~l~W~~p~~~~-i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (1189)
.+|..|.++.... .....++--|++...+. ...|.+.|.... + .++++...
T Consensus 6 ~~p~~P~~~~C~S-~~~etftC~W~~g~~~~l~~~y~L~Y~~~~-~---------------------~~~eCp~~----- 57 (104)
T PF09067_consen 6 LPPEKPENLKCFS-REMETFTCFWEPGSEGNLPTNYTLFYKKEG-E---------------------EWKECPDY----- 57 (104)
T ss_dssp HHCCCCEEEEEEB-SSSS-EEEEEEEESSSTSTCEEEEEEEETT-S---------------------EEEEESES-----
T ss_pred cCCCCCccCccCC-CCCCcEEEEeeCCCCCCCCCcEEEEEEeCC-C---------------------CCccCCCe-----
Confidence 3688899999998 88899999999986532 355999665321 0 12222111
Q ss_pred eeecCccE-----EEEc--cCCCCCeEEEEEEEeeCCC
Q psy4951 157 QMFVDKTE-----YVLE--SLLPGRKYSINVQAVSNGM 187 (1189)
Q Consensus 157 ~~~~~~~~-----~~l~--~L~p~t~Y~~~V~A~~~~g 187 (1189)
......+ |.+. +..-++.|.|+|.|.+..|
T Consensus 58 -~~~~~ns~~~~~C~F~~~~t~lf~~y~i~V~a~~~~~ 94 (104)
T PF09067_consen 58 -STSGPNSTVRHICYFPKSDTSLFVPYCIQVEATNALG 94 (104)
T ss_dssp -STTETTEEEEEEEEE-CCGCSSSSEEEEEEEEEETTE
T ss_pred -EecCCCCceeEEEEcCCCCeEEEEEEEEEEEeccCCC
Confidence 1111233 6666 7899999999999998765
No 80
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=66.61 E-value=4.2 Score=34.58 Aligned_cols=32 Identities=13% Similarity=0.174 Sum_probs=17.1
Q ss_pred CCCCCCEEEeehHHHHHHHHHHHHhhheeecC
Q psy4951 950 DQDNTPLVVGITIPFILVLILCMTVFILRSRR 981 (1189)
Q Consensus 950 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~r 981 (1189)
.-..+++-.+++++++++++|+-++||.+|+|
T Consensus 29 ~~~~Lgm~~lvI~~iFil~VilwfvCC~kRkr 60 (94)
T PF05393_consen 29 NWPNLGMWFLVICGIFILLVILWFVCCKKRKR 60 (94)
T ss_pred CCCccchhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 33445555555666655555555555555544
No 81
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=65.11 E-value=4.5 Score=41.17 Aligned_cols=30 Identities=20% Similarity=0.430 Sum_probs=19.9
Q ss_pred CCCCEEEeehHHHHHHHHHHHHhhheeecC
Q psy4951 952 DNTPLVVGITIPFILVLILCMTVFILRSRR 981 (1189)
Q Consensus 952 ~~~~ii~~~~~~~~~~~~~~~~~~~~~~~r 981 (1189)
.-+.|++|+++|++.++++++++.++|++|
T Consensus 35 d~~~I~iaiVAG~~tVILVI~i~v~vR~CR 64 (221)
T PF08374_consen 35 DYVKIMIAIVAGIMTVILVIFIVVLVRYCR 64 (221)
T ss_pred cceeeeeeeecchhhhHHHHHHHHHHHHHh
Confidence 456688888888777666666655555344
No 82
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=63.93 E-value=3.1 Score=39.91 Aligned_cols=6 Identities=33% Similarity=0.363 Sum_probs=2.2
Q ss_pred heeecC
Q psy4951 976 ILRSRR 981 (1189)
Q Consensus 976 ~~~~~r 981 (1189)
|++|||
T Consensus 21 ~~~rRR 26 (130)
T PF12273_consen 21 CHNRRR 26 (130)
T ss_pred HHHHHH
Confidence 333333
No 83
>PF05454 DAG1: Dystroglycan (Dystrophin-associated glycoprotein 1); InterPro: IPR008465 Dystroglycan is one of the dystrophin-associated glycoproteins, which is encoded by a 5.5 kb transcript in Homo sapiens. The protein product is cleaved into two non-covalently associated subunits, [alpha] (N-terminal) and [beta] (C-terminal). In skeletal muscle the dystroglycan complex works as a transmembrane linkage between the extracellular matrix and the cytoskeleton [alpha]-dystroglycan is extracellular and binds to merosin ([alpha]-2 laminin) in the basement membrane, while [beta]-dystroglycan is a transmembrane protein and binds to dystrophin, which is a large rod-like cytoskeletal protein, absent in Duchenne muscular dystrophy patients. Dystrophin binds to intracellular actin cables. In this way, the dystroglycan complex, which links the extracellular matrix to the intracellular actin cables, is thought to provide structural integrity in muscle tissues. The dystroglycan complex is also known to serve as an agrin receptor in muscle, where it may regulate agrin-induced acetylcholine receptor clustering at the neuromuscular junction. There is also evidence which suggests the function of dystroglycan as a part of the signal transduction pathway because it is shown that Grb2, a mediator of the Ras-related signal pathway, can interact with the cytoplasmic domain of dystroglycan. In general, aberrant expression of dystrophin-associated protein complex underlies the pathogenesis of Duchenne muscular dystrophy, Becker muscular dystrophy and severe childhood autosomal recessive muscular dystrophy. Interestingly, no genetic disease has been described for either [alpha]- or [beta]-dystroglycan. Dystroglycan is widely distributed in non-muscle tissues as well as in muscle tissues. During epithelial morphogenesis of kidney, the dystroglycan complex is shown to act as a receptor for the basement membrane. Dystroglycan expression in Mus musculus brain and neural retina has also been reported. However, the physiological role of dystroglycan in non-muscle tissues has remained unclear [].; PDB: 1EG4_P.
Probab=63.70 E-value=2.3 Score=46.29 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=0.0
Q ss_pred EEEeehHHHHHHHHHHHHhhheeecCccccc
Q psy4951 956 LVVGITIPFILVLILCMTVFILRSRRKNVRK 986 (1189)
Q Consensus 956 ii~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 986 (1189)
+|..++++++++++.+++.||+||||+.+..
T Consensus 149 ~IpaVVI~~iLLIA~iIa~icyrrkR~GK~~ 179 (290)
T PF05454_consen 149 FIPAVVIAAILLIAGIIACICYRRKRKGKMS 179 (290)
T ss_dssp -------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhccccc
Confidence 4444444444555555555777766654433
No 84
>PF01299 Lamp: Lysosome-associated membrane glycoprotein (Lamp); InterPro: IPR002000 Lysosome-associated membrane glycoproteins (lamp) [] are integral membrane proteins, specific to lysosomes, and whose exact biological function is not yet clear. Structurally, the lamp proteins consist of two internally homologous lysosome-luminal domains separated by a proline-rich hinge region; at the C-terminal extremity there is a transmembrane region (TM) followed by a very short cytoplasmic tail (C). In each of the duplicated domains, there are two conserved disulphide bonds. This structure is schematically represented in the figure below. +-----+ +-----+ +-----+ +-----+ | | | | | | | | xCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxxxCxxxxxCxxxxxxxxxxxxCxxxxxCxxxxxxxx +--------------------------++Hinge++--------------------------++TM++C+ In mammals, there are two closely related types of lamp: lamp-1 and lamp-2, which form major components of the lysosome membrane. In chicken lamp-1 is known as LEP100. Also included in this entry is the macrophage protein CD68 (or macrosialin) [] is a heavily glycosylated integral membrane protein whose structure consists of a mucin-like domain followed by a proline-rich hinge; a single lamp-like domain; a transmembrane region and a short cytoplasmic tail. Similar to CD68, mammalian lamp-3, which is expressed in lymphoid organs, dendritic cells and in lung, contains all the C-terminal regions but lacks the N-terminal lamp-like region []. In a lamp-family protein from nematodes [] only the part C-terminal to the hinge is conserved. ; GO: 0016020 membrane
Probab=62.84 E-value=12 Score=41.96 Aligned_cols=15 Identities=13% Similarity=0.279 Sum_probs=11.2
Q ss_pred CCEEEEEEEEEeCCC
Q psy4951 912 GSTYKVKIRAFTTPD 926 (1189)
Q Consensus 912 ~~~Y~~~v~a~t~~~ 926 (1189)
-.-..++|.||...+
T Consensus 241 l~~~~lqvQaF~~~~ 255 (306)
T PF01299_consen 241 LNLSDLQVQAFRVKN 255 (306)
T ss_pred EEEeEEEEEEEEecC
Confidence 456678899998763
No 85
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=61.57 E-value=2.6 Score=33.82 Aligned_cols=21 Identities=10% Similarity=0.434 Sum_probs=0.0
Q ss_pred CCEEEeehHHHHHHHHHHHHh
Q psy4951 954 TPLVVGITIPFILVLILCMTV 974 (1189)
Q Consensus 954 ~~ii~~~~~~~~~~~~~~~~~ 974 (1189)
.++|+|+++++++.+++++++
T Consensus 12 aavIaG~Vvgll~ailLIlf~ 32 (64)
T PF01034_consen 12 AAVIAGGVVGLLFAILLILFL 32 (64)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 457777776665555554333
No 86
>KOG1948|consensus
Probab=61.37 E-value=4.3e+02 Score=33.36 Aligned_cols=47 Identities=9% Similarity=0.115 Sum_probs=29.7
Q ss_pred cEEEEEEEeCCCcceEEeccCCCccEEEecCCCCCCeEEEEEEEEEc
Q psy4951 308 TEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQVNSVSY 354 (1189)
Q Consensus 308 ~~Y~V~~~~~~~~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V~A~~~ 354 (1189)
.+-.|+-...+.....+...+..+-.|.|.||.|++.|.++|.+..+
T Consensus 922 ~gVaieA~sdn~~~y~eeattdenG~yRiRGL~Pdc~Y~V~vk~~~~ 968 (1165)
T KOG1948|consen 922 KGVAIEALSDNCDLYQEEATTDENGTYRIRGLLPDCEYQVHVKSYAD 968 (1165)
T ss_pred cCeEEEEecCCCCccccccccccCCcEEEeccCCCceEEEEEeeccC
Confidence 34444444433222223333334578999999999999999998743
No 87
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=61.24 E-value=4.9 Score=38.60 Aligned_cols=13 Identities=8% Similarity=0.370 Sum_probs=5.4
Q ss_pred HHhhheeecCccc
Q psy4951 972 MTVFILRSRRKNV 984 (1189)
Q Consensus 972 ~~~~~~~~~r~~~ 984 (1189)
++++++.+.++++
T Consensus 14 l~~~~~~~~~rRR 26 (130)
T PF12273_consen 14 LFLFLFYCHNRRR 26 (130)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444333
No 88
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=60.61 E-value=1.8 Score=40.46 Aligned_cols=27 Identities=19% Similarity=0.459 Sum_probs=13.6
Q ss_pred CCEEEeehHHHHHHHHHHHHhhheeecCc
Q psy4951 954 TPLVVGITIPFILVLILCMTVFILRSRRK 982 (1189)
Q Consensus 954 ~~ii~~~~~~~~~~~~~~~~~~~~~~~r~ 982 (1189)
.+|++|+++|++++++ +++||+||+|+
T Consensus 67 ~~Ii~gv~aGvIg~Il--li~y~irR~~K 93 (122)
T PF01102_consen 67 IGIIFGVMAGVIGIIL--LISYCIRRLRK 93 (122)
T ss_dssp HHHHHHHHHHHHHHHH--HHHHHHHHHS-
T ss_pred eehhHHHHHHHHHHHH--HHHHHHHHHhc
Confidence 3466666666654333 33455555554
No 89
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=59.00 E-value=6 Score=38.34 Aligned_cols=48 Identities=10% Similarity=-0.015 Sum_probs=36.3
Q ss_pred CCCCCCCcceEEeHHHHHHHhcCCCCCCHHHHHHHHHhCccccccChhhhhhH
Q psy4951 1091 GHNSPRRSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICI 1143 (1189)
Q Consensus 1091 ~~~~~~rtg~fi~~~~~~~~~~~~~~~dv~~~v~~~r~~R~~~v~~~~Qy~f~ 1143 (1189)
...+..|||++|+...+..+ ..++.+.+..+|++|+.+..+..+...+
T Consensus 88 C~~G~~Rs~~~~~~~l~~~~-----~~~~~~a~~~vr~~r~~~~~~~~~~~~l 135 (139)
T cd00127 88 CLAGVSRSATLVIAYLMKTL-----GLSLREAYEFVKSRRPIISPNAGFMRQL 135 (139)
T ss_pred CCCCCchhHHHHHHHHHHHc-----CCCHHHHHHHHHHHCCccCCCHHHHHHH
Confidence 33444599999988655433 5699999999999999888877666554
No 90
>PF15069 FAM163: FAM163 family
Probab=58.67 E-value=11 Score=35.96 Aligned_cols=28 Identities=14% Similarity=0.248 Sum_probs=19.4
Q ss_pred CCEEEeehHHHHHHHHHHHHhhheeecC
Q psy4951 954 TPLVVGITIPFILVLILCMTVFILRSRR 981 (1189)
Q Consensus 954 ~~ii~~~~~~~~~~~~~~~~~~~~~~~r 981 (1189)
..+|.|.+++.+++++|++++++.|-+.
T Consensus 5 TvVItGgILAtVILLcIIaVLCYCRLQY 32 (143)
T PF15069_consen 5 TVVITGGILATVILLCIIAVLCYCRLQY 32 (143)
T ss_pred eEEEechHHHHHHHHHHHHHHHHHhhHH
Confidence 3577888888877777777776655443
No 91
>KOG1948|consensus
Probab=57.37 E-value=5e+02 Score=32.84 Aligned_cols=116 Identities=18% Similarity=0.210 Sum_probs=63.4
Q ss_pred cccEEEEcCCCCCCEEEEEEEEEeCCCcceeeeccceeEEEEeccCCCCCcccccccccceeeccccccee-eeecccce
Q psy4951 606 LHTSIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFFQAEKFH-PIDVQPGD 684 (1189)
Q Consensus 606 ~~~~~~l~~L~p~t~Y~~~V~A~~~~g~~~~~~s~~~s~~~~T~~~~P~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~ts 684 (1189)
.+..|.|.||.|+..|.++|.+.-+. ....++.|.+.++......-... ++. +.....+.
T Consensus 944 enG~yRiRGL~Pdc~Y~V~vk~~~~n--~~iers~P~s~tv~vgneDv~gl-----------------nf~af~q~kttd 1004 (1165)
T KOG1948|consen 944 ENGTYRIRGLLPDCEYQVHVKSYADN--SPIERSFPRSFTVSVGNEDVKGL-----------------NFMAFIQAKTTD 1004 (1165)
T ss_pred cCCcEEEeccCCCceEEEEEeeccCC--CcccccCCceEEEEecccccCCc-----------------eEEEEeccceEE
Confidence 35679999999999999999988432 12346666665554322211111 222 22333344
Q ss_pred EEEEecCCCCCCCCcceEE-EEEEeccCcccceeeeeeeeecCcceeeEEeC--CCCCCcccceEEEEEEEEE
Q psy4951 685 ITFEWSLPGSEQNGVIRKF-TISYAQEAACNHNQRLHAKFQLPRVNSKKLKG--WPGTLRTDWRSYIYKLQAE 754 (1189)
Q Consensus 685 v~l~W~~P~~~~ng~i~~Y-~i~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~pg~~~~~~t~Y~~~V~A~ 754 (1189)
|+..-..-. |-.+..- .+.|+.++....... +. ..+..+.+.. .+| ..|.+++.+.
T Consensus 1005 it~~V~~~~---ne~l~sl~vv~yKs~nddspv~s----v~-~gql~~ffp~l~~dg------~~yvV~l~St 1063 (1165)
T KOG1948|consen 1005 ITVEVGMDT---NEELQSLRVVIYKSNNDDSPVAS----VV-AGQLLHFFPNLPRDG------VEYVVRLEST 1063 (1165)
T ss_pred EEEEEcccc---cccccceEEEEEecCCCCCcceE----Ee-ccceeeeccccCCCC------ceEEEEEecc
Confidence 444433322 2233333 344555544433333 33 4445666666 899 9999888643
No 92
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=52.17 E-value=94 Score=27.37 Aligned_cols=65 Identities=12% Similarity=0.165 Sum_probs=38.2
Q ss_pred cEEEEEeeCCCcceeEEEEEEEeeccCCCCcceEeeeecCCCCCCCCceEEEe-cCCCCCCeEEEEEEE
Q psy4951 383 SNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILI-DQLTPGVKYQFTIRT 450 (1189)
Q Consensus 383 ~sv~lsW~~p~g~i~~Y~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~L~p~t~Y~v~V~a 450 (1189)
..++|+|+..+.....|.|... ............+............+.+ .+|.++..|.|++..
T Consensus 13 ~~~~I~W~~~~~~~~~~~I~L~---~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~l~~~~~Y~i~~~~ 78 (93)
T PF10342_consen 13 QPITITWTSDGTDPGNVTIYLC---NGNNTNLNFVQTIASNVSNSDGSYTWTIPSDLPSGGDYFIQIVN 78 (93)
T ss_pred CcEEEEEeCCCCCCcEEEEEEE---cCCCCCcceeEEEEecccCCCCEEEEEcCCCCCCCCcEEEEEEE
Confidence 7799999987544577888887 2222111111222211111113445556 569999999999984
No 93
>PF14575 EphA2_TM: Ephrin type-A receptor 2 transmembrane domain; PDB: 3KUL_A 2XVD_A 2VX1_A 2VWV_A 2VX0_A 2VWY_A 2VWZ_A 2VWW_A 2VWU_A 2VWX_A ....
Probab=46.02 E-value=5.6 Score=33.83 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=9.5
Q ss_pred eehHHHHHHHHHHHHhhhee
Q psy4951 959 GITIPFILVLILCMTVFILR 978 (1189)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~~ 978 (1189)
++++|+++++.+++++++++
T Consensus 5 ~~~~g~~~ll~~v~~~~~~~ 24 (75)
T PF14575_consen 5 SIIVGVLLLLVLVIIVIVCF 24 (75)
T ss_dssp HHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHhheeEEEEE
Confidence 34555555554444444333
No 94
>PF02010 REJ: REJ domain; InterPro: IPR002859 The REJ (Receptor for Egg Jelly) domain is found in PKD1 P98161 from SWISSPROT and the sperm receptor for egg jelly Q26627 from SWISSPROT. The exact function of this domain is unknown. The domain is 600 amino acids long so is probably composed of multiple structural domains. There are six completely conserved cysteine residues that may form disulphide bridges. This region contains tandem PKD-like domains. Sequence similarity between a region of the autosomal dominant polycystic kidney disease (ADPKD) protein, polycystin-1 and a sea urchin sperm glycoprotein involved in fertilization, the receptor for egg jelly (suREJ) has been known for some time. The suREJ protein binds the glycoprotein coat of the egg (egg jelly), triggering the acrosome reaction, which transforms the sperm into a fusogenic cell. The sequence similarity and expression pattern suggests that the predicted human PKDREJ protein is a mammalian equivalent of the suREJ protein and therefore may have a central role in human fertilization [].; PDB: 2E7M_A 2YRL_A.
Probab=45.52 E-value=18 Score=43.17 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=0.0
Q ss_pred EeCCCCCCeEEEEEEEEeCCcCCC
Q psy4951 526 FNNLTPGKLYNFTVWTVADGVLST 549 (1189)
Q Consensus 526 l~~L~p~t~Y~v~V~a~~~~~~S~ 549 (1189)
-..|.+|..|.|++.+..++..+.
T Consensus 154 ~~~l~~~~~y~f~ltv~k~~r~s~ 177 (440)
T PF02010_consen 154 ASTLSPGSTYTFTLTVSKGSRSSS 177 (440)
T ss_dssp ------------------------
T ss_pred hHHcCCCceEEEEEEEEeCCCCce
Confidence 367999999999999988765333
No 95
>KOG0792|consensus
Probab=45.21 E-value=5.2 Score=50.15 Aligned_cols=55 Identities=24% Similarity=0.287 Sum_probs=44.2
Q ss_pred CCCcccccccCCCCCCCCCcce----EEeHHHHHHHhcCCCCCCHHHHHHHHHhCccccccChh
Q psy4951 1079 EGSDYINANYVPGHNSPRRSGT----LIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQ 1138 (1189)
Q Consensus 1079 ~~~dYInAs~v~~~~~~~rtg~----fi~~~~~~~~~~~~~~~dv~~~v~~~r~~R~~~v~~~~ 1138 (1189)
+..|| ||+||+.-..+--.|. |||+ |.+...+.-|||+|||+-...-..|+.++.
T Consensus 915 ~~~~~-nagYINAS~i~ipvgg~e~~YIA~----QGPLp~T~~DFWQMVWEQ~~~lIvMlT~e~ 973 (1144)
T KOG0792|consen 915 PSKDN-NAGYINASHIEIPVGGIENRYIAC----QGPLPHTCTDFWQMVWEQGSTLIVMLTTEV 973 (1144)
T ss_pred cCCCC-CcccccceeeEeeecceeEEEEEe----cCCCcchHHHHHHHHHhcCceEEEEEeehh
Confidence 55688 9999996444332243 6777 999999999999999999999999998854
No 96
>PF14292 SusE: SusE outer membrane protein
Probab=42.39 E-value=1.9e+02 Score=27.30 Aligned_cols=61 Identities=13% Similarity=0.318 Sum_probs=39.0
Q ss_pred cccEEEEEeeCCCCC---CceEEEEEEEeCCCCCccceEEeee---ccEEEEc-----------CCCCCCeEEEEEEE
Q psy4951 201 IEFGLNISWKSDVNS---RQDNFEVIYNRNDTITEDPITVVTT---DSKLLLE-----------NLYPGAGYSIQVFA 261 (1189)
Q Consensus 201 ~~~si~lsW~~p~~~---~i~~Y~V~~~~~~~~~~~~~~~~~~---~~s~~i~-----------~L~p~t~Y~v~V~a 261 (1189)
....+.++|+++..+ ....|.|++...++.......+... .++..++ |+.||....+.++.
T Consensus 43 ~~~a~tftW~~~~~~~~~a~v~Y~lq~~~~~~~F~~~~~~~~~~~~~~s~~~t~~eLN~~l~~~g~~~~~~~~l~~rV 120 (122)
T PF14292_consen 43 SDNAVTFTWTAADYGGPDAPVTYTLQFDKKGNDFSSPVEIVTTDNGSTSVSITVKELNSILLKLGLEPGEAGTLYWRV 120 (122)
T ss_pred CCceEEEEEECCccCCCCCceEEEEEEeccCCCccCcEEEEeecCcceeEEecHHHHHHHHHHcCCCCCceEEEEEEE
Confidence 446899999998533 3468999998755433323333322 3455543 57888888877764
No 97
>PF09240 IL6Ra-bind: Interleukin-6 receptor alpha chain, binding; InterPro: IPR015321 Members of this entry adopt a structure consisting of an immunoglobulin-like beta-sandwich, with seven strands in two beta-sheets, in a Greek-key topology. They are required for binding to the cytokine Interleukin-6 []. ; PDB: 1N26_A 1P9M_C 3LB6_C 1PVH_A 3L5H_A 1BQU_A 1I1R_A 3QT2_B 3BPN_C 3BPO_C ....
Probab=41.93 E-value=2.6e+02 Score=25.10 Aligned_cols=72 Identities=8% Similarity=0.003 Sum_probs=49.9
Q ss_pred CCcceEEEEEeCcEEEEEeeCCC--CCCceEEEEEEcCCC--eEEE-----eeccccEEEEcCCCC----CCEEEEEEEE
Q psy4951 561 PITRINATEITDTSVSLTWDSPR--GEYNAFEVQYLNTEG--FLIQ-----NLTLHTSIVIGDLKP----HRNYTFTVIV 627 (1189)
Q Consensus 561 ~P~~l~v~~v~~~sv~l~W~~p~--g~i~~Y~V~~~~~~~--~~~~-----~~~~~~~~~l~~L~p----~t~Y~~~V~A 627 (1189)
+|++|.+.--+...+.-+|.+-. ..-+.|.+.|+.... .... .......+.+..+.. ...|.|.|.+
T Consensus 1 ~~~nlsC~~~~~~~m~CtW~~g~~~~~~t~y~L~~~~~~~~~~~eC~~y~~~~~~~~gC~~~~~~~~~~~~~~~~v~V~~ 80 (99)
T PF09240_consen 1 KPQNLSCFIYNLEYMNCTWEPGKEAPPDTQYTLYYWYSPLEEEKECPHYSKDSGTRIGCQFPVSEIDSSEFSQYNVCVNG 80 (99)
T ss_dssp S-EEEEEEEETTTEEEEEEECCTTCSTTEEEEEEEEETTSSSEEEESEEEESTSSEEEEEEESCTT-TTTTSEEEEEEEE
T ss_pred CCeeCEEEEECCEEEEEEECCCCCCCCcccEEEEEEcCCCCccccCCCccccCCceeEEEecCCCccccccceEEEEEEe
Confidence 46788888888999999998754 235689999988763 2111 112245566666555 3589999999
Q ss_pred EeCCC
Q psy4951 628 RSGTE 632 (1189)
Q Consensus 628 ~~~~g 632 (1189)
.+..|
T Consensus 81 ss~~~ 85 (99)
T PF09240_consen 81 SSSAG 85 (99)
T ss_dssp EETTE
T ss_pred ccCCC
Confidence 98886
No 98
>PF06365 CD34_antigen: CD34/Podocalyxin family; InterPro: IPR013836 This family consists of several mammalian CD34 antigen proteins. The CD34 antigen is a human leukocyte membrane protein expressed specifically by lymphohematopoietic progenitor cells. CD34 is a phosphoprotein. Activation of protein kinase C (PKC) has been found to enhance CD34 phosphorylation [, ]. This family contains several eukaryotic podocalyxin proteins. Podocalyxin is a major membrane protein of the glomerular epithelium and is thought to be involved in maintenance of the architecture of the foot processes and filtration slits characteristic of this unique epithelium by virtue of its high negative charge. Podocalyxin functions as an anti-adhesin that maintains an open filtration pathway between neighbouring foot processes in the glomerular epithelium by charge repulsion [].
Probab=41.32 E-value=18 Score=37.10 Aligned_cols=61 Identities=13% Similarity=0.206 Sum_probs=27.3
Q ss_pred EEEeehH-H-HHHHHHHHHHhhheeecCccccccccccccCCccccccccCCCCccchhhHHHHH
Q psy4951 956 LVVGITI-P-FILVLILCMTVFILRSRRKNVRKTTESRNADNMSLQDSIVETSRPIRLENFAEHY 1018 (1189)
Q Consensus 956 ii~~~~~-~-~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 1018 (1189)
+++++++ | ++++++++.++||+.+||..+.+ .++...+....|..-.+.+.+++.+.....
T Consensus 101 ~lI~lv~~g~~lLla~~~~~~Y~~~~Rrs~~~~--~~rl~Ee~~~vEng~h~n~~l~v~~~~~E~ 163 (202)
T PF06365_consen 101 TLIALVTSGSFLLLAILLGAGYCCHQRRSWSKK--GQRLGEELYTVENGYHDNPTLSVAESQPEM 163 (202)
T ss_pred EEEehHHhhHHHHHHHHHHHHHHhhhhccCCcc--hhhhccCceecccCccCCcccccCCCCccc
Confidence 4444433 3 34444444455555555544322 223333444444444455555555433333
No 99
>PF12877 DUF3827: Domain of unknown function (DUF3827); InterPro: IPR024606 The function of the proteins in this entry is not currently known, but one of the human proteins (Q9HCM3 from SWISSPROT) has been implicated in pilocytic astrocytomas [, , ]. In the majority of cases of pilocytic astrocytomas a tandem duplication produces an in-frame fusion of the gene encoding this protein and the BRAF oncogene. The resulting fusion protein has constitutive BRAF kinase activity and is capable of transforming cells.
Probab=40.30 E-value=22 Score=42.49 Aligned_cols=25 Identities=20% Similarity=0.590 Sum_probs=17.4
Q ss_pred CCCCCCEEEeehHHHHHHHHHHHHh
Q psy4951 950 DQDNTPLVVGITIPFILVLILCMTV 974 (1189)
Q Consensus 950 ~~~~~~ii~~~~~~~~~~~~~~~~~ 974 (1189)
...++.||+|+++.++++++|++++
T Consensus 265 ~~~NlWII~gVlvPv~vV~~Iiiil 289 (684)
T PF12877_consen 265 PPNNLWIIAGVLVPVLVVLLIIIIL 289 (684)
T ss_pred CCCCeEEEehHhHHHHHHHHHHHHH
Confidence 4567778899988777666665554
No 100
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=38.08 E-value=6.6 Score=43.20 Aligned_cols=25 Identities=24% Similarity=0.723 Sum_probs=13.2
Q ss_pred EEeehHHHHHHHHHHHHhh-heeecC
Q psy4951 957 VVGITIPFILVLILCMTVF-ILRSRR 981 (1189)
Q Consensus 957 i~~~~~~~~~~~~~~~~~~-~~~~~r 981 (1189)
+++.+++|+++++++++|+ ++|-||
T Consensus 258 I~aSiiaIliIVLIMvIIYLILRYRR 283 (299)
T PF02009_consen 258 IIASIIAILIIVLIMVIIYLILRYRR 283 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444556666666666554 344444
No 101
>PHA02579 7 baseplate wedge subunit; Provisional
Probab=38.05 E-value=98 Score=37.87 Aligned_cols=77 Identities=18% Similarity=0.295 Sum_probs=54.9
Q ss_pred CCCcceEEEeeeCCeEEEEeeCCCCCcccEEEEEEEeC---CC-------cceEEeccCCCccEEEecCCCCCCeEEEEE
Q psy4951 280 KPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTE---ED-------KTWVRLPNVGTSLEAEVTDMVPGEKCMIQV 349 (1189)
Q Consensus 280 ~pP~~l~v~~~t~~sv~vsW~~p~~g~i~~Y~V~~~~~---~~-------~~~~~~~~~~~~~~~~i~~L~p~t~Y~~~V 349 (1189)
.+...|++...+.+.+.|+|+.... --.|.|++... ++ -.|.++........+. +.++|.+.|.+||
T Consensus 6 P~vtslrI~kLsaN~v~l~WddVG~--NFyY~Ve~a~t~~~~g~~ip~~~~~w~nlg~T~~~~wFe-d~~~p~t~Yk~Rv 82 (1030)
T PHA02579 6 PSVTSLRIDKLSANQVYLTWDDVGA--NFYYFVELAETRDADGELIPDDELRWINLGYTANNEWFE-DKLQPNTYYKFRV 82 (1030)
T ss_pred CcccEEEhhhhccceEEEEeeccCC--ceEEEEEEEeeccCCCccCCCccccceecCcccchhhhh-hccCCcceEEEEE
Confidence 3457888889999999999997542 36799998854 22 2366666655534444 4599999999999
Q ss_pred EEEEcCccCC
Q psy4951 350 NSVSYSVESA 359 (1189)
Q Consensus 350 ~A~~~~g~s~ 359 (1189)
+....+-+.+
T Consensus 83 ~~~~qGFe~S 92 (1030)
T PHA02579 83 AVAAQGFEQS 92 (1030)
T ss_pred EeeccCCCcc
Confidence 9776655444
No 102
>PF13908 Shisa: Wnt and FGF inhibitory regulator
Probab=37.75 E-value=24 Score=36.02 Aligned_cols=23 Identities=22% Similarity=0.407 Sum_probs=12.7
Q ss_pred CCCEEEeehHHHHHHHHHHHHhh
Q psy4951 953 NTPLVVGITIPFILVLILCMTVF 975 (1189)
Q Consensus 953 ~~~ii~~~~~~~~~~~~~~~~~~ 975 (1189)
.++|++++++++++|++++++++
T Consensus 77 ~~~iivgvi~~Vi~Iv~~Iv~~~ 99 (179)
T PF13908_consen 77 ITGIIVGVICGVIAIVVLIVCFC 99 (179)
T ss_pred eeeeeeehhhHHHHHHHhHhhhe
Confidence 34577777666655544444443
No 103
>TIGR00868 hCaCC calcium-activated chloride channel protein 1. distributions. found a row in 1A13.INFO that was not parsed out
Probab=36.36 E-value=1.1e+03 Score=30.66 Aligned_cols=32 Identities=25% Similarity=0.469 Sum_probs=24.1
Q ss_pred ccceEEeecCcEEEEEeeCC-----CcceeEEEEEEE
Q psy4951 373 ATYVAALVDASNVTLEFPRP-----EGRIEYYLVTWR 404 (1189)
Q Consensus 373 p~~l~~~~~~~sv~lsW~~p-----~g~i~~Y~V~~~ 404 (1189)
..+|........|.|+|+.| .|....|.|.+.
T Consensus 759 ItDL~~~~~~~~v~LsWTAPG~d~D~G~a~~y~ir~s 795 (863)
T TIGR00868 759 ITDLEAGFQGDNIILTWTAPGDVLDHGRADRYIIRIS 795 (863)
T ss_pred ceeeEEeecCCEEEEEeeCCCccCCCCccceEEEEec
Confidence 34444456667799999998 467789999987
No 104
>PHA02740 protein tyrosine phosphatase; Provisional
Probab=35.34 E-value=10 Score=42.22 Aligned_cols=39 Identities=3% Similarity=0.083 Sum_probs=35.7
Q ss_pred CCcceEEeHHHHHHHhcCCCCCCHHHHHHHHHhCccccccChh
Q psy4951 1096 RRSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQ 1138 (1189)
Q Consensus 1096 ~rtg~fi~~~~~~~~~~~~~~~dv~~~v~~~r~~R~~~v~~~~ 1138 (1189)
++...|||+ |.+..++..|||+|||+-+.+-..|+...+
T Consensus 88 ~~~~~fIaT----Q~Pl~~T~~dFW~MVwe~~~~iIVMLt~~~ 126 (298)
T PHA02740 88 DFEQKFICI----INLCEDACDKFLQALSDNKVQIIVLISRHA 126 (298)
T ss_pred CCCCcEEEe----cCCchhhHHHHHHHHHhcCCCEEEEccccc
Confidence 388899999 999999999999999999999999998754
No 105
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=35.29 E-value=13 Score=34.03 Aligned_cols=24 Identities=17% Similarity=0.337 Sum_probs=14.9
Q ss_pred eehHHHHHHHHHHHHhhheeecCc
Q psy4951 959 GITIPFILVLILCMTVFILRSRRK 982 (1189)
Q Consensus 959 ~~~~~~~~~~~~~~~~~~~~~~r~ 982 (1189)
..++++++++++++-+++||.+++
T Consensus 4 l~il~llLll~l~asl~~wr~~~r 27 (107)
T PF15330_consen 4 LGILALLLLLSLAASLLAWRMKQR 27 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345666666666666766665543
No 106
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=34.93 E-value=19 Score=34.81 Aligned_cols=48 Identities=13% Similarity=0.001 Sum_probs=35.4
Q ss_pred CCCCCCCcceEEeHHHHHHHhcCCCCCCHHHHHHHHHhCccccccChhhhhhH
Q psy4951 1091 GHNSPRRSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICI 1143 (1189)
Q Consensus 1091 ~~~~~~rtg~fi~~~~~~~~~~~~~~~dv~~~v~~~r~~R~~~v~~~~Qy~f~ 1143 (1189)
+..+..|||+++++..+. . ...++.+.+..+|+.|+.+..+..|+.-+
T Consensus 85 C~~G~~RS~~v~~~yl~~----~-~~~~~~~A~~~v~~~R~~~~p~~~~~~qL 132 (138)
T smart00195 85 CQAGVSRSATLIIAYLMK----Y-RNLSLNDAYDFVKDRRPIISPNFGFLRQL 132 (138)
T ss_pred CCCCCchHHHHHHHHHHH----H-hCCCHHHHHHHHHHHCCccCCCHhHHHHH
Confidence 333444999999985443 2 23589999999999999998887766554
No 107
>PF06697 DUF1191: Protein of unknown function (DUF1191); InterPro: IPR010605 This family contains hypothetical plant proteins of unknown function.
Probab=34.21 E-value=23 Score=38.22 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=16.1
Q ss_pred EEEeehHHHHHHHHHHHHhhheeecC
Q psy4951 956 LVVGITIPFILVLILCMTVFILRSRR 981 (1189)
Q Consensus 956 ii~~~~~~~~~~~~~~~~~~~~~~~r 981 (1189)
|++|++.|+++++++.+++++..|.+
T Consensus 215 iv~g~~~G~~~L~ll~~lv~~~vr~k 240 (278)
T PF06697_consen 215 IVVGVVGGVVLLGLLSLLVAMLVRYK 240 (278)
T ss_pred EEEEehHHHHHHHHHHHHHHhhhhhh
Confidence 56666788877776665555444433
No 108
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=33.49 E-value=12 Score=35.10 Aligned_cols=35 Identities=17% Similarity=0.309 Sum_probs=18.0
Q ss_pred CCCCCEEEeehHHHHHHHHHHHHhhheeecCccccc
Q psy4951 951 QDNTPLVVGITIPFILVLILCMTVFILRSRRKNVRK 986 (1189)
Q Consensus 951 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~r~~~~~ 986 (1189)
....+.++++++|++.-+ |.++++++..-|+.+++
T Consensus 60 ~fs~~~i~~Ii~gv~aGv-Ig~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 60 RFSEPAIIGIIFGVMAGV-IGIILLISYCIRRLRKK 94 (122)
T ss_dssp SSS-TCHHHHHHHHHHHH-HHHHHHHHHHHHHHS--
T ss_pred CccccceeehhHHHHHHH-HHHHHHHHHHHHHHhcc
Confidence 344456666666664333 33555667776655555
No 109
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=33.19 E-value=2.2e+02 Score=26.08 Aligned_cols=30 Identities=17% Similarity=0.163 Sum_probs=22.8
Q ss_pred EEEEccCCCCCeEEEEEEEeeCCCCCCCCCc
Q psy4951 164 EYVLESLLPGRKYSINVQAVSNGMESPSFPI 194 (1189)
Q Consensus 164 ~~~l~~L~p~t~Y~~~V~A~~~~g~sP~~p~ 194 (1189)
+.++. ..-|-.|+++|..+++.|.+-++|.
T Consensus 71 ~at~~-v~kgG~y~m~V~lCn~dGCS~S~~~ 100 (106)
T cd02848 71 TATFK-VGKGGRYQMQVALCNGDGCSTSAAK 100 (106)
T ss_pred EEEEE-eCCCCeEEEEEEEECCCCccCcCCE
Confidence 44444 3445589999999999999977765
No 110
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=32.82 E-value=99 Score=29.61 Aligned_cols=85 Identities=15% Similarity=0.243 Sum_probs=40.0
Q ss_pred CCCeEEEEeecCCCCCcceEEEEeeehhhHhHhhhhhhccccccCCCCCceeeeeecccCCCceeeecCccEEEEccCCC
Q psy4951 93 KTGDLFISWKPDNASYQDMYKISIKSILLEEEHQKQFLMGFLGDCDNGSKISYVEIETLNGDSNQMFVDKTEYVLESLLP 172 (1189)
Q Consensus 93 s~~sv~l~W~~p~~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~p 172 (1189)
..-.+.|+|+...|..-+.|+|. .+|..| +.. ... ...+.+++.- .
T Consensus 36 ~~v~V~VtwN~WsG~~Gd~~kly----------------------~dG~~V-~tG---------~~~-~~~~a~~~~~-~ 81 (133)
T PF08329_consen 36 DQVDVSVTWNVWSGTNGDTAKLY----------------------FDGVLV-WTG---------PSP-QQKSATFTVT-K 81 (133)
T ss_dssp SSEEEEEEEE-SSS---SEEEEE----------------------ETTEEE-EEE---------E---SEEEEEEEE--S
T ss_pred CceEEEEEEEEecCCCCCEEEEE----------------------ECCEEE-EeC---------CCc-cCceEEEEec-C
Confidence 55679999999877444788881 223222 110 011 1223344444 4
Q ss_pred CCeEEEEEEEeeCCCCCCCCCceeeecccc----cEEEEEeeC
Q psy4951 173 GRKYSINVQAVSNGMESPSFPIIEDLRPIE----FGLNISWKS 211 (1189)
Q Consensus 173 ~t~Y~~~V~A~~~~g~sP~~p~~~~~~~~~----~si~lsW~~ 211 (1189)
+-.|+++|..+|..|.+-+.|....+.-+. .-|...|.+
T Consensus 82 gG~y~~~VeLCN~~GCS~S~~~~V~VaDTDGsHl~pL~~~~~~ 124 (133)
T PF08329_consen 82 GGRYQMQVELCNADGCSTSAPVEVVVADTDGSHLAPLPYNWDE 124 (133)
T ss_dssp -EEEEEEEEEEETTEEEE---EEEEEE-TTSTTS--------T
T ss_pred CCEEEEEEEEECCCCcccCCCEEEEEeCCCccccccccCcccc
Confidence 458999999999999997776633332211 235556665
No 111
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=31.48 E-value=33 Score=30.82 Aligned_cols=11 Identities=18% Similarity=0.579 Sum_probs=5.9
Q ss_pred CEEEeehHHHH
Q psy4951 955 PLVVGITIPFI 965 (1189)
Q Consensus 955 ~ii~~~~~~~~ 965 (1189)
+.|+|++++++
T Consensus 66 gaiagi~vg~~ 76 (96)
T PTZ00382 66 GAIAGISVAVV 76 (96)
T ss_pred ccEEEEEeehh
Confidence 45666555443
No 112
>PF07204 Orthoreo_P10: Orthoreovirus membrane fusion protein p10; InterPro: IPR009854 This family consists of several Orthoreovirus membrane fusion protein p10 sequences. p10 is thought to be a multifunctional protein that plays a key role in virus-host interaction [].
Probab=30.86 E-value=26 Score=30.54 Aligned_cols=20 Identities=35% Similarity=0.526 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHhhheeecCc
Q psy4951 963 PFILVLILCMTVFILRSRRK 982 (1189)
Q Consensus 963 ~~~~~~~~~~~~~~~~~~r~ 982 (1189)
+++++++++.+++|+|.|++
T Consensus 50 G~iLilIii~Lv~CC~~K~K 69 (98)
T PF07204_consen 50 GLILILIIIALVCCCRAKHK 69 (98)
T ss_pred hhhhHHHHHHHHHHhhhhhh
Confidence 55566666666666665554
No 113
>PF14054 DUF4249: Domain of unknown function (DUF4249)
Probab=30.09 E-value=6.7e+02 Score=27.68 Aligned_cols=63 Identities=22% Similarity=0.330 Sum_probs=37.3
Q ss_pred CCCCCCeEEEEEEEEeCCcCCCcEEEeeccCCCCCc--ceEEEEEe-----CcE---EEEEeeCCCCCCceEEEEEEc
Q psy4951 528 NLTPGKLYNFTVWTVADGVLSTPIQRHDRLYPEPIT--RINATEIT-----DTS---VSLTWDSPRGEYNAFEVQYLN 595 (1189)
Q Consensus 528 ~L~p~t~Y~v~V~a~~~~~~S~~~~~~~~t~p~~P~--~l~v~~v~-----~~s---v~l~W~~p~g~i~~Y~V~~~~ 595 (1189)
.+.+|..|.++|.+-++...+ .. .+.|.+|. .+...... ... +.+.|+.|.+.-..|++.+..
T Consensus 95 ~~~~G~~Y~L~V~~~~~~~~s----a~-~~vp~~~~i~~v~~~~~~~~~~~~~~~~~i~~~~~D~~~~~nyY~~~~~~ 167 (298)
T PF14054_consen 95 RGRPGRTYRLEVETPGGKTYS----AE-TTVPPPPPIDSVSYEFKKIGDGDEGEYYRISITFQDPPGEDNYYRWRVEQ 167 (298)
T ss_pred cccCCCEEEEEEEECCCCEEE----EE-EEECCCCceeEEEEEEecCCCCcccceeEEEEEEeCCCCCceEEEEEEEE
Confidence 468999999999886332221 11 23343333 33332211 112 889999888777778887763
No 114
>PF14292 SusE: SusE outer membrane protein
Probab=29.58 E-value=4.3e+02 Score=24.82 Aligned_cols=69 Identities=19% Similarity=0.346 Sum_probs=40.0
Q ss_pred cceEEEeeeCCeEEEEeeCCCCC---cccEEEEEEEeCCCc--ceEEeccCC-CccEEEec-----------CCCCCCeE
Q psy4951 283 TNLTLEKTSSNAVLVKWKEPVGS---IFTEYSIRYRTEEDK--TWVRLPNVG-TSLEAEVT-----------DMVPGEKC 345 (1189)
Q Consensus 283 ~~l~v~~~t~~sv~vsW~~p~~g---~i~~Y~V~~~~~~~~--~~~~~~~~~-~~~~~~i~-----------~L~p~t~Y 345 (1189)
..+.+.......++++|+++..+ ....|.|+....++. ....+.... ..++..++ |+.|+...
T Consensus 35 ~~i~L~~~~~~a~tftW~~~~~~~~~a~v~Y~lq~~~~~~~F~~~~~~~~~~~~~~s~~~t~~eLN~~l~~~g~~~~~~~ 114 (122)
T PF14292_consen 35 SSIVLDEASDNAVTFTWTAADYGGPDAPVTYTLQFDKKGNDFSSPVEIVTTDNGSTSVSITVKELNSILLKLGLEPGEAG 114 (122)
T ss_pred ceEEecccCCceEEEEEECCccCCCCCceEEEEEEeccCCCccCcEEEEeecCcceeEEecHHHHHHHHHHcCCCCCceE
Confidence 34555444567899999999833 245899998875432 112221111 12444443 57788777
Q ss_pred EEEEEE
Q psy4951 346 MIQVNS 351 (1189)
Q Consensus 346 ~~~V~A 351 (1189)
.+.++.
T Consensus 115 ~l~~rV 120 (122)
T PF14292_consen 115 TLYWRV 120 (122)
T ss_pred EEEEEE
Confidence 776653
No 115
>PF10342 GPI-anchored: Ser-Thr-rich glycosyl-phosphatidyl-inositol-anchored membrane family; InterPro: IPR018466 This entry represents glycoproteins involved in cell wall (1-->6)-beta-glucan assembly. In yeast a null mutation leads to severe growth defects, aberrant multi-budded morphology, and mating defects [, ]. The entry includes DRMIP and Hesp-379, which are involved in both fruiting body formation and in host attack respectively. Hesp-379 is a haustorially expressed secreted protein; the haustorium being the small sucker that penetrates host tissue [].
Probab=29.28 E-value=2.2e+02 Score=24.96 Aligned_cols=55 Identities=18% Similarity=0.347 Sum_probs=37.0
Q ss_pred CcEEEEEeeCCCCCCceEEEEEEcCCC---eEEE----ee-c--cccEEEE-cCCCCCCEEEEEEE
Q psy4951 572 DTSVSLTWDSPRGEYNAFEVQYLNTEG---FLIQ----NL-T--LHTSIVI-GDLKPHRNYTFTVI 626 (1189)
Q Consensus 572 ~~sv~l~W~~p~g~i~~Y~V~~~~~~~---~~~~----~~-~--~~~~~~l-~~L~p~t~Y~~~V~ 626 (1189)
...+.|+|+........|.|.+..... .... .. . ....+++ .+|.++..|.|++.
T Consensus 12 g~~~~I~W~~~~~~~~~~~I~L~~g~~~~~~~~~~ia~~v~~~~gs~~~~~p~~l~~~~~Y~i~~~ 77 (93)
T PF10342_consen 12 GQPITITWTSDGTDPGNVTIYLCNGNNTNLNFVQTIASNVSNSDGSYTWTIPSDLPSGGDYFIQIV 77 (93)
T ss_pred CCcEEEEEeCCCCCCcEEEEEEEcCCCCCcceeEEEEecccCCCCEEEEEcCCCCCCCCcEEEEEE
Confidence 467999999986555788888877655 1111 11 1 2334455 56999999999988
No 116
>PF07213 DAP10: DAP10 membrane protein; InterPro: IPR009861 This family consists of several mammalian DAP10 membrane proteins. In activated mouse natural killer (NK) cells, the NKG2D receptor associates with two intracellular adaptors, DAP10 and DAP12, which trigger phosphatidyl inositol 3 kinase (PI3K) and Syk family protein tyrosine kinases, respectively. It has been suggested that the DAP10-PI3K pathway is sufficient to initiate NKG2D-mediated killing of target cells [].
Probab=26.53 E-value=28 Score=29.49 Aligned_cols=31 Identities=23% Similarity=0.437 Sum_probs=18.0
Q ss_pred CCCCEEEeehHH-HHHHHHHHHHhhheeecCc
Q psy4951 952 DNTPLVVGITIP-FILVLILCMTVFILRSRRK 982 (1189)
Q Consensus 952 ~~~~ii~~~~~~-~~~~~~~~~~~~~~~~~r~ 982 (1189)
...++++|++++ +++-++|++++|++-|.|+
T Consensus 31 ls~g~LaGiV~~D~vlTLLIv~~vy~car~r~ 62 (79)
T PF07213_consen 31 LSPGLLAGIVAADAVLTLLIVLVVYYCARPRR 62 (79)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 345678888776 4445555555555554443
No 117
>PF13750 Big_3_3: Bacterial Ig-like domain (group 3)
Probab=24.54 E-value=7.1e+02 Score=24.77 Aligned_cols=34 Identities=18% Similarity=0.174 Sum_probs=25.2
Q ss_pred EeCCCCCCeEEEEEEEEeCCcCCCcEEEeeccCC
Q psy4951 526 FNNLTPGKLYNFTVWTVADGVLSTPIQRHDRLYP 559 (1189)
Q Consensus 526 l~~L~p~t~Y~v~V~a~~~~~~S~~~~~~~~t~p 559 (1189)
+..|+++..|.++|.|....|......+.+.-.|
T Consensus 116 fpsle~~~~YtLtV~a~D~aGN~~~~si~F~y~P 149 (158)
T PF13750_consen 116 FPSLEADDSYTLTVSATDKAGNQSTKSISFSYMP 149 (158)
T ss_pred cCCcCCCCeEEEEEEEEecCCCEEEEEEEEEEeC
Confidence 4578899999999999988776555555554443
No 118
>PF12191 stn_TNFRSF12A: Tumour necrosis factor receptor stn_TNFRSF12A_TNFR domain; InterPro: IPR022316 The tumour necrosis factor (TNF) receptor (TNFR) superfamily comprises more than 20 type-I transmembrane proteins. Family members are defined based on similarity in their extracellular domain - a region that contains many cysteine residues arranged in a specific repetitive pattern []. The cysteines allow formation of an extended rod-like structure, responsible for ligand binding []. Upon receptor activation, different intracellular signalling complexes are assembled for different members of the TNFR superfamily, depending on their intracellular domains and sequences []. Activation of TNFRs can therefore induce a range of disparate effects, including cell proliferation, differentiation, survival, or apoptotic cell death, depending upon the receptor involved []. TNFRs are widely distributed and play important roles in many crucial biological processes, such as lymphoid and neuronal development, innate and adaptive immunity, and maintenance of cellular homeostasis []. Drugs that manipulate their signalling have potential roles in the prevention and treatment of many diseases, such as viral infections, coronary heart disease, transplant rejection, and immune disease []. TNF receptor 12 (also known as TWEAK receptor, and fibroblast growth factor-inducible-14 (Fn14)) has been implicated in endothelial cell growth and migration []. The receptor may also play a role in cell-matrix interactions [].; PDB: 2KN0_A 2RPJ_A 2KMZ_A 2EQP_A.
Probab=23.56 E-value=28 Score=32.32 Aligned_cols=21 Identities=29% Similarity=0.463 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhheeecC
Q psy4951 961 TIPFILVLILCMTVFILRSRR 981 (1189)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~~~r 981 (1189)
+.++++++.++.+++++||.|
T Consensus 85 al~v~lVl~llsg~lv~rrcr 105 (129)
T PF12191_consen 85 ALSVVLVLALLSGFLVWRRCR 105 (129)
T ss_dssp ---------------------
T ss_pred HHHHHHHHHHHHHHHHHhhhh
Confidence 334444444444555565554
No 119
>PF05568 ASFV_J13L: African swine fever virus J13L protein; InterPro: IPR008385 This family consists of several African swine fever virus (ASFV) j13L proteins [, , ].
Probab=23.50 E-value=41 Score=31.66 Aligned_cols=7 Identities=0% Similarity=0.183 Sum_probs=2.8
Q ss_pred hheeecC
Q psy4951 975 FILRSRR 981 (1189)
Q Consensus 975 ~~~~~~r 981 (1189)
+|-+|||
T Consensus 51 lcssRKk 57 (189)
T PF05568_consen 51 LCSSRKK 57 (189)
T ss_pred HHhhhhH
Confidence 3444433
No 120
>KOG3515|consensus
Probab=23.43 E-value=6.3e+02 Score=31.86 Aligned_cols=151 Identities=13% Similarity=0.100 Sum_probs=92.4
Q ss_pred CccEEEEccCCCCCeEEEEEEEeeCCCCCCCCCceee------------ecccccEEEEEeeCCCCCCc---eEEEEEEE
Q psy4951 161 DKTEYVLESLLPGRKYSINVQAVSNGMESPSFPIIED------------LRPIEFGLNISWKSDVNSRQ---DNFEVIYN 225 (1189)
Q Consensus 161 ~~~~~~l~~L~p~t~Y~~~V~A~~~~g~sP~~p~~~~------------~~~~~~si~lsW~~p~~~~i---~~Y~V~~~ 225 (1189)
..+.+.++++.|-..|.-++.+....+..+.+|.+.. .....-+....|...+-... .-|..-+.
T Consensus 568 ~~~~~~~d~~~~pA~~~~~l~~~s~~~v~~~tp~~~~~~~g~v~as~~~~a~~~~~~~~~~~k~p~~~~~~~~~~~~~~~ 647 (741)
T KOG3515|consen 568 SETACVVDGSSPPAGLSLVLKAYSALIVTVRTPNMYTAQEGCVNASDDCVASGVPSTSFTTAKTPLQTTEGPHIREKATQ 647 (741)
T ss_pred cceEEeecCCCCccccceEEEecccccccccCCceeeeccCcccccccceecccccceeecccCCCcccCCceEEEeeee
Confidence 4466888888899999999999888777754443211 11123345566766431111 11111111
Q ss_pred eCCCCCccceEEeeeccEEEEcCCCCCCeEEEEEEEEeCCccCCc-eeeecccCCCCCcceEEEeeeCCeEEEEeeCCC-
Q psy4951 226 RNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAISHGLRSEP-HDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPV- 303 (1189)
Q Consensus 226 ~~~~~~~~~~~~~~~~~s~~i~~L~p~t~Y~v~V~a~~~~~~s~~-~~~~~~t~p~pP~~l~v~~~t~~sv~vsW~~p~- 303 (1189)
.. .....+-.+-+-.++..|.+.+.+.|.-+...- .....-+.+..|.||.+...+..++.+.|.+--
T Consensus 648 ~~----------~~~s~~~~~~~~~~~~~y~~~c~t~n~lg~~~v~~~~~~~t~~~~~~n~~~~~~~~~~i~l~~~p~fd 717 (741)
T KOG3515|consen 648 QG----------QTHSSSEWILNHIDGSDYENGCTTQNLLGSDHVSGAIHSGTASVGPINLTYDNLTYSTISLEWMPGFD 717 (741)
T ss_pred cc----------ccccccccccCCcchhhhcceeeecccCCCccccceecCCcCCCCccceEeeeeeeeeeceeeeeccc
Confidence 10 112223334455788899977777774322221 123345678899999999999999999999876
Q ss_pred CCcccEEEEEEEeCCCcc
Q psy4951 304 GSIFTEYSIRYRTEEDKT 321 (1189)
Q Consensus 304 ~g~i~~Y~V~~~~~~~~~ 321 (1189)
+|--..|.+.|...++..
T Consensus 718 gg~~q~f~~~~~~~~~~~ 735 (741)
T KOG3515|consen 718 GGLQQRFFLKYYDLGTMK 735 (741)
T ss_pred cccccceeeehhhcCCce
Confidence 566778888887765543
No 121
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=23.01 E-value=16 Score=34.95 Aligned_cols=45 Identities=13% Similarity=0.067 Sum_probs=34.1
Q ss_pred CCcceEEeHHHHHHHhcCCCCCCHHHHHHHHHhCccccccChhhhhhHHH
Q psy4951 1096 RRSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQ 1145 (1189)
Q Consensus 1096 ~rtg~fi~~~~~~~~~~~~~~~dv~~~v~~~r~~R~~~v~~~~Qy~f~y~ 1145 (1189)
.|||+++++..+. .. ..++-+.+..+|+.|+.+..+..|+..+++
T Consensus 85 ~RS~~v~~ayLm~----~~-~~~~~~A~~~v~~~rp~~~~~~~~~~~L~~ 129 (133)
T PF00782_consen 85 SRSGAVAAAYLMK----KN-GMSLEEAIEYVRSRRPQINPNPSFIRQLYE 129 (133)
T ss_dssp SHHHHHHHHHHHH----HH-TSSHHHHHHHHHHHSTTSTHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH----Hc-CCCHHHHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 3899988874433 22 338889999999999999988877776654
No 122
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=22.96 E-value=61 Score=29.16 Aligned_cols=30 Identities=3% Similarity=-0.011 Sum_probs=16.1
Q ss_pred CCCCCEEEeehHHHHHHHHHHHHhhheeecC
Q psy4951 951 QDNTPLVVGITIPFILVLILCMTVFILRSRR 981 (1189)
Q Consensus 951 ~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~r 981 (1189)
....+|.+++++.+..++.+ +.+++++|||
T Consensus 66 gaiagi~vg~~~~v~~lv~~-l~w~f~~r~k 95 (96)
T PTZ00382 66 GAIAGISVAVVAVVGGLVGF-LCWWFVCRGK 95 (96)
T ss_pred ccEEEEEeehhhHHHHHHHH-HhheeEEeec
Confidence 34566778777666444444 3344444433
No 123
>cd02848 Chitinase_N_term Chitinase N-terminus domain. Chitinases hydrolyze the abundant natural biopolymer chitin, producing smaller chito-oligosaccharides. Chitin consists of multiple N-acetyl-D-glucosamine (NAG) residues connected via beta-1,4-glycosidic linkages and is an important structural element of fungal cell wall and arthropod exoskeletons. On the basis of the mode of chitin hydrolysis, chitinases are classified as random, endo-, and exo-chitinases and based on sequence criteria, chitinases belong to families 18 and 19 of glycosyl hydrolases. The N-terminus of chitinase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitob
Probab=22.10 E-value=4e+02 Score=24.44 Aligned_cols=57 Identities=14% Similarity=0.238 Sum_probs=34.0
Q ss_pred CcEEEEEeeCCCCCC-ceEEEEEEcCCCeEEEe---eccccEEEEcCCCCCCEEEEEEEEEeCCC
Q psy4951 572 DTSVSLTWDSPRGEY-NAFEVQYLNTEGFLIQN---LTLHTSIVIGDLKPHRNYTFTVIVRSGTE 632 (1189)
Q Consensus 572 ~~sv~l~W~~p~g~i-~~Y~V~~~~~~~~~~~~---~~~~~~~~l~~L~p~t~Y~~~V~A~~~~g 632 (1189)
.-.+.|+|+-=.|.. +.|.|.+.. ..+.. ...+++.++. ...|-.|.++|..++..|
T Consensus 33 ~v~V~V~wnvWsG~~Gd~a~vl~dg---~~V~~G~~~~~~~~at~~-v~kgG~y~m~V~lCn~dG 93 (106)
T cd02848 33 AADVSVKWNAWSGDPGDTYKVLLDG---KEVWSGALTGSSGTATFK-VGKGGRYQMQVALCNGDG 93 (106)
T ss_pred ceEEEEEEeeecCCCCcEEEEEECC---eEEEcccCCCCccEEEEE-eCCCCeEEEEEEEECCCC
Confidence 345677777655432 567775522 11111 1122344444 566779999999999998
No 124
>KOG1094|consensus
Probab=20.65 E-value=78 Score=37.82 Aligned_cols=32 Identities=25% Similarity=0.489 Sum_probs=25.1
Q ss_pred CCCCCCEEEeehHHHHHHHHHHHHhhheeecC
Q psy4951 950 DQDNTPLVVGITIPFILVLILCMTVFILRSRR 981 (1189)
Q Consensus 950 ~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~r 981 (1189)
+..+..++++|++++++++++++.++.||.||
T Consensus 386 ~~~~t~~~~~~f~~if~iva~ii~~~L~R~rr 417 (807)
T KOG1094|consen 386 DGSPTAILIIIFVAIFLIVALIIALMLWRWRR 417 (807)
T ss_pred cCCCceehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667788999999988888888888887433
No 125
>PF15102 TMEM154: TMEM154 protein family
Probab=20.61 E-value=37 Score=32.70 Aligned_cols=9 Identities=44% Similarity=0.593 Sum_probs=4.6
Q ss_pred hHHHHHHcc
Q psy4951 1029 FSEEFEELK 1037 (1189)
Q Consensus 1029 ~~~E~~~l~ 1037 (1189)
+.-|-++|.
T Consensus 123 meiEmeeld 131 (146)
T PF15102_consen 123 MEIEMEELD 131 (146)
T ss_pred hhhhHHHHH
Confidence 445555554
No 126
>PF08374 Protocadherin: Protocadherin; InterPro: IPR013585 The structure of protocadherins is similar to that of classic cadherins (IPR002126 from INTERPRO), but they also have some unique features associated with the cytoplasmic domains. They are expressed in a variety of organisms and are found in high concentrations in the brain where they seem to be localised mainly at cell-cell contact sites. Their expression seems to be developmentally regulated [].
Probab=20.60 E-value=71 Score=32.90 Aligned_cols=32 Identities=19% Similarity=0.357 Sum_probs=20.7
Q ss_pred CCCCEEEeehHHHHHHHHHHHHhhheeecCcc
Q psy4951 952 DNTPLVVGITIPFILVLILCMTVFILRSRRKN 983 (1189)
Q Consensus 952 ~~~~ii~~~~~~~~~~~~~~~~~~~~~~~r~~ 983 (1189)
..+++|+|+++.||+|++.+++-+|..+.++.
T Consensus 39 I~iaiVAG~~tVILVI~i~v~vR~CRq~~~k~ 70 (221)
T PF08374_consen 39 IMIAIVAGIMTVILVIFIVVLVRYCRQSPHKK 70 (221)
T ss_pred eeeeeecchhhhHHHHHHHHHHHHHhhccccc
Confidence 45678888887777666666665565344443
No 127
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=20.27 E-value=71 Score=29.07 Aligned_cols=11 Identities=9% Similarity=0.362 Sum_probs=4.0
Q ss_pred EEEeehHHHHH
Q psy4951 956 LVVGITIPFIL 966 (1189)
Q Consensus 956 ii~~~~~~~~~ 966 (1189)
+++..++++++
T Consensus 63 iili~lls~v~ 73 (101)
T PF06024_consen 63 IILISLLSFVC 73 (101)
T ss_pred chHHHHHHHHH
Confidence 33333333333
Done!