RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4951
(1189 letters)
>gnl|CDD|214550 smart00194, PTPc, Protein tyrosine phosphatase, catalytic domain.
Length = 259
Score = 92.0 bits (229), Expect = 2e-20
Identities = 36/70 (51%), Positives = 48/70 (68%), Gaps = 2/70 (2%)
Query: 1029 FSEEFEELKHVGRE-QSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINAN 1087
EEFE+L + + +SCT A P NR KNR+ ++LPYDH+R KL+P EGSDYINA+
Sbjct: 2 LEEEFEKLDRLKPDDESCTVAAFPENRDKNRYKDVLPYDHTRVKLKP-PPGEGSDYINAS 60
Query: 1088 YVPGHNSPRR 1097
Y+ G N P+
Sbjct: 61 YIDGPNGPKA 70
Score = 80.8 bits (200), Expect = 1e-16
Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLL 1148
R+GT IA+D +LQ + VDIF IV +R +R MVQTE+QYI +++ +L
Sbjct: 207 RTGTFIAIDILLQQLEAGKEVDIFEIVKELRSQRPGMVQTEEQYIFLYRAIL 258
>gnl|CDD|238006 cd00047, PTPc, Protein tyrosine phosphatases (PTP) catalyze the
dephosphorylation of phosphotyrosine peptides; they
regulate phosphotyrosine levels in signal transduction
pathways. The depth of the active site cleft renders the
enzyme specific for phosphorylated Tyr (pTyr) residues,
instead of pSer or pThr. This family has a distinctive
active site signature motif, HCSAGxGRxG. Characterized as
either transmembrane, receptor-like or non-transmembrane
(soluble) PTPs. Receptor-like PTP domains tend to occur
in two copies in the cytoplasmic region of the
transmembrane proteins, only one copy may be active.
Length = 231
Score = 85.3 bits (212), Expect = 2e-18
Identities = 25/52 (48%), Positives = 36/52 (69%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLL 1148
R+GT IA+D +LQ + VVDIF V +R +R MVQTE+QYI +++ +L
Sbjct: 179 RTGTFIAIDILLQRLEAEGVVDIFQTVKELRSQRPGMVQTEEQYIFLYRAIL 230
Score = 75.3 bits (186), Expect = 5e-15
Identities = 27/43 (62%), Positives = 36/43 (83%), Gaps = 1/43 (2%)
Query: 1055 PKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRR 1097
KNR+ +ILPYDH+R KL+P DD+EGSDYINA+Y+ G+N P+
Sbjct: 1 KKNRYKDILPYDHTRVKLKP-DDDEGSDYINASYIDGYNPPKA 42
>gnl|CDD|215717 pfam00102, Y_phosphatase, Protein-tyrosine phosphatase.
Length = 233
Score = 77.7 bits (192), Expect = 8e-16
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLL 1148
R+GT IA+D +LQ + VD+F IV +R +R MVQTE+QYI ++ +L
Sbjct: 181 RTGTFIAIDILLQQLEAEGEVDVFQIVKELRSQRPGMVQTEEQYIFLYDAVL 232
Score = 70.0 bits (172), Expect = 4e-13
Identities = 24/45 (53%), Positives = 30/45 (66%), Gaps = 3/45 (6%)
Query: 1053 NRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRR 1097
N KNR+ +ILPYDH+R KL P SDYINA+Y+ G+ PR
Sbjct: 1 NLEKNRYKDILPYDHTRVKLTPGGP---SDYINASYIDGYRKPRA 42
>gnl|CDD|214649 smart00404, PTPc_motif, Protein tyrosine phosphatase, catalytic
domain motif.
Length = 105
Score = 68.9 bits (169), Expect = 5e-14
Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 1097 RSGTLIALDRILQSI-NHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLL 1148
R+GT +A+D +LQ + + VDIF V +R +R MVQTE+QY+ +++ LL
Sbjct: 52 RTGTFVAIDILLQQLEAEAGEVDIFDTVKELRSQRPGMVQTEEQYLFLYRALL 104
>gnl|CDD|214469 smart00012, PTPc_DSPc, Protein tyrosine phosphatase, catalytic
domain, undefined specificity. Protein tyrosine
phosphatases. Homologues detected by this profile and not
by those of "PTPc" or "DSPc" are predicted to be protein
phosphatases with a similar fold to DSPs and PTPs, yet
with unpredicted specificities.
Length = 105
Score = 68.9 bits (169), Expect = 5e-14
Identities = 23/53 (43%), Positives = 36/53 (67%), Gaps = 1/53 (1%)
Query: 1097 RSGTLIALDRILQSI-NHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLL 1148
R+GT +A+D +LQ + + VDIF V +R +R MVQTE+QY+ +++ LL
Sbjct: 52 RTGTFVAIDILLQQLEAEAGEVDIFDTVKELRSQRPGMVQTEEQYLFLYRALL 104
>gnl|CDD|238020 cd00063, FN3, Fibronectin type 3 domain; One of three types of
internal repeats found in the plasma protein
fibronectin. Its tenth fibronectin type III repeat
contains an RGD cell recognition sequence in a flexible
loop between 2 strands. Approximately 2% of all animal
proteins contain the FN3 repeat; including extracellular
and intracellular proteins, membrane spanning cytokine
receptors, growth hormone receptors, tyrosine
phosphatase receptors, and adhesion molecules. FN3-like
domains are also found in bacterial glycosyl hydrolases.
Length = 93
Score = 54.0 bits (130), Expect = 6e-09
Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 3/78 (3%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKTWVRL-PNVGTSLEAE 335
P PPTNL + +S +V + W P G T Y + YR + W + G+
Sbjct: 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSETSYT 60
Query: 336 VTDMVPGEKCMIQVNSVS 353
+T + PG + +V +V+
Sbjct: 61 LTGLKPGTEYEFRVRAVN 78
Score = 53.7 bits (129), Expect = 9e-09
Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 7/83 (8%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNA---FEVQYLNTEGFLIQNLTLH----TSIV 611
P P T + T++T TSV+L+W P + + V+Y + + + TS
Sbjct: 1 PSPPTNLRVTDVTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSETSYT 60
Query: 612 IGDLKPHRNYTFTVIVRSGTESS 634
+ LKP Y F V +G S
Sbjct: 61 LTGLKPGTEYEFRVRAVNGGGES 83
Score = 38.6 bits (90), Expect = 0.002
Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 3/69 (4%)
Query: 205 LNISWK--SDVNSRQDNFEVIYNRNDTITEDPITV-VTTDSKLLLENLYPGAGYSIQVFA 261
+ +SW D + V Y + + V +++ L L PG Y +V A
Sbjct: 17 VTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRA 76
Query: 262 ISHGLRSEP 270
++ G S P
Sbjct: 77 VNGGGESPP 85
Score = 36.7 bits (85), Expect = 0.007
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 13/91 (14%)
Query: 380 VDASNVTLEFPRPE---GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILID 436
V +++VTL + PE G I Y+V +R G K V P + + +
Sbjct: 12 VTSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDW------KEVEVTPGSETSYT---LT 62
Query: 437 QLTPGVKYQFTIRTVSYNLESG-VTSLSART 466
L PG +Y+F +R V+ ES S++ T
Sbjct: 63 GLKPGTEYEFRVRAVNGGGESPPSESVTVTT 93
Score = 36.7 bits (85), Expect = 0.008
Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 6/65 (9%)
Query: 138 DNGSKISYVEIETLNGDSNQM------FVDKTEYVLESLLPGRKYSINVQAVSNGMESPS 191
D+G I+ +E S +T Y L L PG +Y V+AV+ G ESP
Sbjct: 26 DDGGPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEFRVRAVNGGGESPP 85
Query: 192 FPIIE 196
+
Sbjct: 86 SESVT 90
Score = 35.5 bits (82), Expect = 0.019
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Query: 482 STDSVTLRYTPQNSNH--FDFYRFTLSEPDIPVIEKAAND--TDRKVTFNNLTPGKLYNF 537
++ SVTL +TP + Y E ++ ++ T L PG Y F
Sbjct: 13 TSTSVTLSWTPPEDDGGPITGYVVEYREKGSGDWKEVEVTPGSETSYTLTGLKPGTEYEF 72
Query: 538 TVWTVADGVLSTPIQ 552
V V G S P +
Sbjct: 73 RVRAVNGGGESPPSE 87
>gnl|CDD|214495 smart00060, FN3, Fibronectin type 3 domain. One of three types of
internal repeat within the plasma protein, fibronectin.
The tenth fibronectin type III repeat contains a RGD
cell recognition sequence in a flexible loop between 2
strands. Type III modules are present in both
extracellular and intracellular proteins.
Length = 83
Score = 53.4 bits (128), Expect = 8e-09
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 3/78 (3%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYR---TEEDKTWVRLPNVGTSLEAE 335
P PP+NL + +S +V + W+ P T Y + YR EE W + +S
Sbjct: 1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPSSTSYT 60
Query: 336 VTDMVPGEKCMIQVNSVS 353
+T + PG + +V +V+
Sbjct: 61 LTGLKPGTEYEFRVRAVN 78
Score = 50.3 bits (120), Expect = 1e-07
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 7/83 (8%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGE-YNAFEVQY------LNTEGFLIQNLTLHTSIV 611
P P + + T++T TSV+L+W+ P + + V Y +E + TS
Sbjct: 1 PSPPSNLRVTDVTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPSSTSYT 60
Query: 612 IGDLKPHRNYTFTVIVRSGTESS 634
+ LKP Y F V +G
Sbjct: 61 LTGLKPGTEYEFRVRAVNGAGEG 83
Score = 36.8 bits (85), Expect = 0.006
Identities = 16/65 (24%), Positives = 21/65 (32%), Gaps = 4/65 (6%)
Query: 482 STDSVTLRYTPQNSNHFDFYRFTL----SEPDIPVIEKAANDTDRKVTFNNLTPGKLYNF 537
++ SVTL + P + Y E E + T L PG Y F
Sbjct: 13 TSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPSSTSYTLTGLKPGTEYEF 72
Query: 538 TVWTV 542
V V
Sbjct: 73 RVRAV 77
Score = 36.1 bits (83), Expect = 0.011
Identities = 13/64 (20%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
Query: 205 LNISWKSDVNSRQDNFEVIY---NRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFA 261
+ +SW+ + + V Y R + + V + + L L PG Y +V A
Sbjct: 17 VTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPSSTSYTLTGLKPGTEYEFRVRA 76
Query: 262 ISHG 265
++
Sbjct: 77 VNGA 80
Score = 33.7 bits (77), Expect = 0.072
Identities = 20/110 (18%), Positives = 31/110 (28%), Gaps = 27/110 (24%)
Query: 80 PLPVLDLTAVMDDKTGDLFISWKPDNASYQDMYKISIKSILLEEEHQKQFLMGFLGDCDN 139
P P +L T + +SW+P Y + +
Sbjct: 1 PSPPSNLRVTDVTSTS-VTLSWEPPPDDGITGYIVGYR------------------VEYR 41
Query: 140 GSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMES 189
+ E+ T Y L L PG +Y V+AV+ E
Sbjct: 42 EEGSEWKEVNVT--------PSSTSYTLTGLKPGTEYEFRVRAVNGAGEG 83
Score = 30.7 bits (69), Expect = 0.80
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 8/74 (10%)
Query: 380 VDASNVTLEFPRPE-GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQL 438
V +++VTL + P I Y+V +R E S + + L
Sbjct: 12 VTSTSVTLSWEPPPDDGITGYIVGYRVEYREEGSEWKEVNVTPSSTS-------YTLTGL 64
Query: 439 TPGVKYQFTIRTVS 452
PG +Y+F +R V+
Sbjct: 65 KPGTEYEFRVRAVN 78
>gnl|CDD|200951 pfam00041, fn3, Fibronectin type III domain.
Length = 84
Score = 52.0 bits (125), Expect = 2e-08
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 6/76 (7%)
Query: 561 PITRINATEITDTSVSLTWDSPR--GEYNAFEVQYLNT-EGFLIQNLTL---HTSIVIGD 614
T + T++T TS++L+W P G +EV+Y G + +T+ TS +
Sbjct: 2 APTNLTVTDVTSTSLTLSWSPPPGNGPITGYEVEYRPVNGGEEWKEITVPGTTTSYTLTG 61
Query: 615 LKPHRNYTFTVIVRSG 630
LKP Y V +G
Sbjct: 62 LKPGTEYEVRVQAVNG 77
Score = 49.7 bits (119), Expect = 2e-07
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEPVGSI-FTEYSIRYRTEED-KTWVRLPNVGTSLEAEVTD 338
PTNLT+ +S ++ + W P G+ T Y + YR + W + GT+ +T
Sbjct: 2 APTNLTVTDVTSTSLTLSWSPPPGNGPITGYEVEYRPVNGGEEWKEITVPGTTTSYTLTG 61
Query: 339 MVPGEKCMIQVNSVS 353
+ PG + ++V +V+
Sbjct: 62 LKPGTEYEVRVQAVN 76
Score = 38.6 bits (90), Expect = 0.001
Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 205 LNISWK-SDVNSRQDNFEVIY-NRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAI 262
L +SW N +EV Y N ITV T + L L PG Y ++V A+
Sbjct: 16 LTLSWSPPPGNGPITGYEVEYRPVNGGEEWKEITVPGTTTSYTLTGLKPGTEYEVRVQAV 75
Query: 263 SHGLRSEPH 271
+ P
Sbjct: 76 NGAGEGPPS 84
Score = 37.4 bits (87), Expect = 0.003
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 6/59 (10%)
Query: 138 DNGSKISYVEIE----TLNGDSNQMFVDKTE--YVLESLLPGRKYSINVQAVSNGMESP 190
I+ E+E + ++ V T Y L L PG +Y + VQAV+ E P
Sbjct: 24 PGNGPITGYEVEYRPVNGGEEWKEITVPGTTTSYTLTGLKPGTEYEVRVQAVNGAGEGP 82
Score = 37.4 bits (87), Expect = 0.003
Identities = 16/75 (21%), Positives = 30/75 (40%), Gaps = 11/75 (14%)
Query: 380 VDASNVTLEF--PRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQ 437
V ++++TL + P G I Y V +R + E+ T +
Sbjct: 11 VTSTSLTLSWSPPPGNGPITGYEVEYRPVNGGEEWKEITVPGTTT---------SYTLTG 61
Query: 438 LTPGVKYQFTIRTVS 452
L PG +Y+ ++ V+
Sbjct: 62 LKPGTEYEVRVQAVN 76
Score = 33.6 bits (77), Expect = 0.083
Identities = 14/74 (18%), Positives = 23/74 (31%), Gaps = 5/74 (6%)
Query: 481 QSTDSVTLRYT-PQNSNHFDFYR---FTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYN 536
++ S+TL ++ P + Y ++ + T T L PG Y
Sbjct: 11 VTSTSLTLSWSPPPGNGPITGYEVEYRPVNGGEEWKEITVPGTTTS-YTLTGLKPGTEYE 69
Query: 537 FTVWTVADGVLSTP 550
V V P
Sbjct: 70 VRVQAVNGAGEGPP 83
>gnl|CDD|227886 COG5599, PTP2, Protein tyrosine phosphatase [Signal transduction
mechanisms].
Length = 302
Score = 49.1 bits (117), Expect = 7e-06
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 3/54 (5%)
Query: 1043 QSCTAADL-PCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSP 1095
+ L N +NR++NI+PY+H+R L+ + +DYINA+Y+
Sbjct: 42 RWSDDTSLSSTNYARNRYSNIVPYEHTRVHLKYG--KSINDYINASYIKTPRGK 93
Score = 46.8 bits (111), Expect = 4e-05
Identities = 26/71 (36%), Positives = 43/71 (60%), Gaps = 12/71 (16%)
Query: 1097 RSGTLIALDRILQ----SINHSDVVD-----IFGIVYHMRKERVWMVQTEQQYICIHQCL 1147
R+GT IALD +L+ ++NH+D + IF IV +R +R+ MVQ + Q+ ++
Sbjct: 231 RTGTFIALDILLRMPNDTLNHTDTWEDTQDLIFQIVLSLRSQRMKMVQNKTQFKFLYD-- 288
Query: 1148 LAVLEGNENQL 1158
A LE N++Q+
Sbjct: 289 -AFLELNKSQI 298
>gnl|CDD|222923 PHA02738, PHA02738, hypothetical protein; Provisional.
Length = 320
Score = 45.3 bits (107), Expect = 1e-04
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 20/77 (25%)
Query: 1015 AEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQP 1074
EH +++S D F+ E + NR NR+ + + +DHSR L P
Sbjct: 29 REHQKVISEKVDGTFNAEKK------------------NRKLNRYLDAVCFDHSRVIL-P 69
Query: 1075 VDDEEGSDYINANYVPG 1091
+ G DYINANYV G
Sbjct: 70 AERNRG-DYINANYVDG 85
>gnl|CDD|165114 PHA02747, PHA02747, protein tyrosine phosphatase; Provisional.
Length = 312
Score = 43.5 bits (102), Expect = 4e-04
Identities = 18/47 (38%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 1051 PCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRR 1097
P N+PKNR+ +I +DH+R L SDYI+AN++ G ++
Sbjct: 49 PENQPKNRYWDIPCWDHNRVILD-SGGGSTSDYIHANWIDGFEDDKK 94
>gnl|CDD|165109 PHA02742, PHA02742, protein tyrosine phosphatase; Provisional.
Length = 303
Score = 43.5 bits (102), Expect = 5e-04
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 4/87 (4%)
Query: 1013 NFAEHYRIMSADSDFR--FSEEFEELKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRF 1070
+FA++ + +S+ EE E + SC + N K R+ + +D +R
Sbjct: 10 SFAKNCEQLIEESNLAEILKEEHEHIMQEIVAFSCNESLELKNMKKCRYPDAPCFDRNRV 69
Query: 1071 KLQPVDDEEGSDYINANYVPGHNSPRR 1097
L ++D G D+INA+YV GHN+ R
Sbjct: 70 IL-KIEDG-GDDFINASYVDGHNAKGR 94
>gnl|CDD|232839 TIGR00128, fabD, malonyl CoA-acyl carrier protein transacylase.
This enzyme of fatty acid biosynthesis transfers the
malonyl moeity from coenzyme A to acyl-carrier protein.
The seed alignment for this family of proteins contains
a single member each from a number of bacterial species
but also an additional pair of closely related,
uncharacterized proteins from B. subtilis, one of which
has a long C-terminal extension [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 290
Score = 34.4 bits (79), Expect = 0.33
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 419 NVTNDPE-DKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGVTSL 462
NV P + D+ L +QLT V++ +V + GVT
Sbjct: 229 NVDAKPYTNGDRIKEKLSEQLTSPVRWT---DSVEKLMARGVTEF 270
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 33.3 bits (77), Expect = 0.89
Identities = 25/73 (34%), Positives = 32/73 (43%), Gaps = 17/73 (23%)
Query: 511 PVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVA-----DGVLSTPIQRHDRLYPEPITRI 565
PVI+ D KV L GKLY + +A DG T I R ++LYP P +
Sbjct: 1097 PVIDDPTVDDGAKVRRVLLCSGKLY----YDLAARREKDGRDDTAIVRVEQLYPLPRAEL 1152
Query: 566 --------NATEI 570
NATE+
Sbjct: 1153 REALARYPNATEV 1165
>gnl|CDD|236514 PRK09434, PRK09434, aminoimidazole riboside kinase; Provisional.
Length = 304
Score = 32.6 bits (75), Expect = 1.1
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 10/77 (12%)
Query: 580 DSPRGEYNAFEVQYLNTEG----FLIQNLTLHTSIVIGDLKPHRNYTFTVIVRSGTESSV 635
D P G F Q L EG +L + TS V+ DL +FT +VR + +
Sbjct: 53 DDPFG---RFMQQTLQDEGVDTTYLRLDPAHRTSTVVVDLDDQGERSFTFMVRPSADLFL 109
Query: 636 LRRSLPVSAIFQTHESL 652
+ LP F+ E L
Sbjct: 110 QPQDLPP---FRQGEWL 123
>gnl|CDD|238989 cd02032, Bchl_like, This family of proteins contains bchL and chlL.
Protochlorophyllide reductase catalyzes the reductive
formation of chlorophyllide from protochlorophyllide
during biosynthesis of chlorophylls and
bacteriochlorophylls. Three genes, bchL, bchN and bchB,
are involved in light-independent protochlorophyllide
reduction in bacteriochlorophyll biosynthesis. In
cyanobacteria, algae, and gymnosperms, three similar
genes, chlL, chlN and chlB are involved in
protochlorophyllide reduction during chlorophylls
biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit
significant sequence similarity to the nifH, nifD and
nifK subunits of nitrogenase, respectively. Nitrogenase
catalyzes the reductive formation of ammonia from
dinitrogen.
Length = 267
Score = 31.6 bits (72), Expect = 2.1
Identities = 11/43 (25%), Positives = 20/43 (46%), Gaps = 9/43 (20%)
Query: 649 HES---LPGKMDRTIVDTWHFVRFFQAEKFHPIDVQPGDITFE 688
H+S L G + T++D + FH ++ P D+ +E
Sbjct: 40 HDSTFTLTGFLIPTVIDI------LEEVDFHYEELWPEDVIYE 76
>gnl|CDD|197581 smart00219, TyrKc, Tyrosine kinase, catalytic domain.
Phosphotransferases. Tyrosine-specific kinase subfamily.
Length = 257
Score = 31.0 bits (71), Expect = 3.3
Identities = 15/60 (25%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 1106 RILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNENQLPLREIHH 1165
RI++ ++H +VV + G+ +E +++V E LL+ L N +L L ++
Sbjct: 53 RIMRKLDHPNVVKLLGVCTE--EEPLYIV-ME---YMEGGDLLSYLRKNRPKLSLSDLLS 106
>gnl|CDD|133425 cd05197, GH4_glycoside_hydrolases, Glycoside Hydrases Family 4.
Glycoside hydrolases cleave glycosidic bonds to release
smaller sugars from oligo- or polysaccharides. Some
bacteria simultaneously translocate and phosphorylate
disaccharides via the phosphoenolpyruvate-dependent
phosphotransferase system (PEP-PTS). After
translocation, these phospho-disaccharides may be
hydrolyzed by GH4 glycoside hydrolases. Other organisms
(such as archaea and Thermotoga maritima) lack the
PEP-PTS system, but have several enzymes normally
associated with the PEP-PTS operon. GH4 family members
include 6-phospho-beta-glucosidases,
6-phospho-alpha-glucosidases,
alpha-glucosidases/alpha-glucuronidases (only from
Thermotoga), and alpha-galactosidases. They require two
cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+),
for activity. Some also require reducing conditions. GH4
glycoside hydrolases are part of the NAD(P)-binding
Rossmann fold superfamily, which includes a wide variety
of protein families including the NAD(P)-binding domains
of alcohol dehydrogenases, tyrosine-dependent
oxidoreductases, glyceraldehyde-3-phosphate
dehydrogenases, formate/glycerate dehydrogenases,
siroheme synthases, 6-phosphogluconate dehydrogenases,
aminoacid dehydrogenases, repressor rex, and NAD-binding
potassium channel domains, among others.
Length = 425
Score = 31.0 bits (70), Expect = 3.9
Identities = 31/135 (22%), Positives = 41/135 (30%), Gaps = 21/135 (15%)
Query: 286 TLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDM--VPGE 343
EK S +A + + P G + TE RY E V L NV + V + E
Sbjct: 129 KXEKLSPDAWYLNFTNPAGEV-TEAVRRYVPPE--KAVGLCNVPIGVMEIVAKLLGESEE 185
Query: 344 KCMIQV---------NSVSYSVESAHPLQINH-----TISPNPATYVAALVDASNVTLEF 389
K Q N V Y+ P +V L A+ F
Sbjct: 186 KVDWQYAGLNHGIWLNRVRYNGGDVTPKLDEWVEEKSKDWKTENPFVDQLSPAAIDFYRF 245
Query: 390 PR--PEGRIEYYLVT 402
P + YYL
Sbjct: 246 YGVLPNPYLRYYLSW 260
>gnl|CDD|219654 pfam07944, DUF1680, Putative glycosyl hydrolase of unknown function
(DUF1680). The members of this family are sequences
derived from hypothetical bacterial and eukaryotic
proteins of unknown function. One members of this family
is annotated as a possible arabinosidase, but no
references were found to back this. These proteins are
related to a large family of glycosyl hydrolases.
Length = 511
Score = 30.4 bits (69), Expect = 6.3
Identities = 10/50 (20%), Positives = 14/50 (28%)
Query: 670 FQAEKFHPIDVQPGDITFEWSLPGSEQNGVIRKFTISYAQEAACNHNQRL 719
A++F + LPG QN I A + L
Sbjct: 200 DLAKRFIHNRGLDPLAYGQDHLPGRHQNTAIGHAVRGAADLYEETGDDAL 249
>gnl|CDD|197376 cd09967, UP_II, Uroplakin II. Uroplakin II, the dimerization
partner of uroplakin Ia, is a member of the uroplakin
family. Uroplakins (UPs) are a family of proteins that
associate with each other to form plaques on the apical
surface of the urothelium, the pseudo-stratified
epithelium lining the urinary tract from renal pelvis to
the bladder outlet. UPs are classified into 3 types:
UPIa and UPIb, UPII, and UPIIIa and IIIb. UPIs are
tetraspanins that have four transmembrane domains
seperating one large and one small extracellular domain
while UPII and UPIIIs are single-pass transmembrane
proteins. UPIa and UPIb form specific heterodimers with
UPII and UPIII, respectively, which allows them to exit
the endoplasmatic rediculum. UPII/UPIa and UPIIIs/UPIb
form heterotetramers and six of these tetramers form the
16nm particle, seen in the hexagonal array of the
asymmetric unit membrane, which is believed to form a
urinary tract barrier. Uroplakins are also believed to
play a role during urinary tract morphogenesis.
Length = 165
Score = 29.5 bits (66), Expect = 6.7
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 612 IGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIF-QTHESLPGKMDRT 659
+ +L P Y + +V GTESS R +P+S + + S+ M R+
Sbjct: 97 VTNLTPGTKYYISYLVGKGTESS---REIPMSTLPRKNMNSIGLGMARS 142
>gnl|CDD|165113 PHA02746, PHA02746, protein tyrosine phosphatase; Provisional.
Length = 323
Score = 30.0 bits (67), Expect = 6.8
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 19/60 (31%)
Query: 1051 PCNRPKNRFTNILPYDHSR--------FKLQPVDDEEG-----------SDYINANYVPG 1091
N KNRF +I +DHSR K+ V D +G +YI+AN+V G
Sbjct: 49 KENLKKNRFHDIPCWDHSRVVINAHESLKMFDVGDSDGKKIEVTSEDNAENYIHANFVDG 108
>gnl|CDD|234997 PRK02090, PRK02090, phosphoadenosine phosphosulfate reductase;
Provisional.
Length = 241
Score = 29.4 bits (67), Expect = 9.3
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 13/55 (23%)
Query: 1041 REQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPV---DDEEGSDYINANYVPGH 1092
REQS T A+LP +L D RFK+ P+ +E+ Y+ + +P H
Sbjct: 151 REQSGTRANLP----------VLEIDGGRFKINPLADWTNEDVWAYLKEHDLPYH 195
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.400
Gapped
Lambda K H
0.267 0.0705 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 59,960,663
Number of extensions: 5851389
Number of successful extensions: 4317
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4295
Number of HSP's successfully gapped: 51
Length of query: 1189
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1081
Effective length of database: 6,147,370
Effective search space: 6645306970
Effective search space used: 6645306970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (28.9 bits)