RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4951
(1189 letters)
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 185 bits (472), Expect = 1e-51
Identities = 76/400 (19%), Positives = 146/400 (36%), Gaps = 49/400 (12%)
Query: 82 PVLDLTAVMDDKTGDLFISWKPDNASYQDMYKISIKSILLEEEHQKQFLMGFLGDCDNGS 141
P +L + TG L +SW+ Y+I+ ++ + + ++
Sbjct: 5 PPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVH--------- 55
Query: 142 KISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMES--------PSFP 193
D++ ++L PG +Y+++V V + ES P P
Sbjct: 56 ------------------ADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPEVP 97
Query: 194 IIEDLRPIEFG---LNISWKSDVNSRQDNFEVIY-NRNDTITEDPITVVTTDSKLLLENL 249
+ DL ++ + + W +S + + + I V ++ + L
Sbjct: 98 QLTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGL 157
Query: 250 YPGAGYSIQVFAISHGLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTE 309
PG Y I V + +G S P Q PPT+L + + V W P T
Sbjct: 158 EPGIDYDISVITLINGGESAPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTN 217
Query: 310 YSIRYRTEEDKTWVRLPNV-GTSLEAEVTDMVPGEKCMIQVNSVSYSVESAHPLQINHTI 368
+ +RY +++ V ++ + +T+++PG + ++ V+SV ES T
Sbjct: 218 FLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTG 277
Query: 369 SPNPATYVAALVDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKD 428
+P + + A++ T+ + P I Y + PE S V +
Sbjct: 278 LDSPTGIDFSDITANSFTVHWIAPRATITGYRIRHH---PEHFSGRPREDRVPHS----- 329
Query: 429 KHVHILIDQLTPGVKYQFTIRTVSYNLESGVTSLSARTMP 468
I + LTPG +Y +I ++ ES + T+
Sbjct: 330 -RNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVS 368
Score = 165 bits (420), Expect = 8e-45
Identities = 76/383 (19%), Positives = 140/383 (36%), Gaps = 26/383 (6%)
Query: 281 PPTNLTLEK-TSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNV--GTSLEAEVT 337
PPTNL LE + + V W+ T Y I + L V
Sbjct: 5 PPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFD 64
Query: 338 DMVPGEKCMIQVNSVSYSVESAHPLQINHTISPNPATYVAALVDASNVTLE-FPRPEGRI 396
++ PG + + V +V ES P + S++ L P I
Sbjct: 65 NLSPGLEYNVSVYTVKDDKESVPISDTIIPEVPQLTDLSFVDITDSSIGLRWTPLNSSTI 124
Query: 397 EYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLE 456
Y +T G E F + + + L PG+ Y ++ T+ E
Sbjct: 125 IGYRITVVAAGEGIPIFEDFVDSSVG---------YYTVTGLEPGIDYDISVITLINGGE 175
Query: 457 SGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQNSNHFDFY--RFTLSEPDIPVIE 514
S T+L+ +T +++ N D++ + + P S + R++ + + V E
Sbjct: 176 SAPTTLTQQTAVPPPTDLRFTN--IGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAE 233
Query: 515 KAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTPIQRHDRLYPEPITRINATEITDTS 574
+ + +D V NL PG Y +V +V + STP++ + + T I+ ++IT S
Sbjct: 234 LSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANS 293
Query: 575 VSLTWDSPRGEYNAFEVQYLNTEG----FLIQNLTLHTSIVIGDLKPHRNYTFTVIVRSG 630
++ W +PR + +++ + SI + +L P Y +++ +G
Sbjct: 294 FTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNG 353
Query: 631 TESSVLRRSLPVSAIFQTHESLP 653
E S + T +
Sbjct: 354 REESP-----LLIGQQSTVSAHH 371
Score = 68.3 bits (167), Expect = 4e-12
Identities = 29/216 (13%), Positives = 64/216 (29%), Gaps = 42/216 (19%)
Query: 80 PLPVLDLTAVMDDKTGDLFISWKPDNASYQDMYKISIKSILLEEEHQKQFLMGFLGDCDN 139
P DL + ++W P + + + + EE+ + +
Sbjct: 187 VPPPTDLRFTNIGPD-TMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISP------- 238
Query: 140 GSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESPSFPIIE--- 196
VL +LLPG +Y ++V +V ES +
Sbjct: 239 ---------------------SDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKTG 277
Query: 197 -----DLRPIEFG---LNISWKSDVNSRQDNFEVIYNR-NDTITEDPITVVTTDSKLLLE 247
+ + + W + + + + ++ + + V + + + L
Sbjct: 278 LDSPTGIDFSDITANSFTVHWIA-PRATITGYRIRHHPEHFSGRPREDRVPHSRNSITLT 336
Query: 248 NLYPGAGYSIQVFAISHGLRSEPHDYFQAVYPKPPT 283
NL PG Y + + A++ S Q+
Sbjct: 337 NLTPGTEYVVSIVALNGREESPLLIGQQSTVSAHHH 372
>2gjt_A Receptor-type tyrosine-protein phosphatase PTPro; tyrosine
phosphatase, glepp1, PTPU2, structural genom structural
genomics consortium, SGC; 2.15A {Homo sapiens} PDB:
2g59_A 2pi7_A
Length = 295
Score = 159 bits (404), Expect = 2e-43
Identities = 50/93 (53%), Positives = 72/93 (77%)
Query: 1005 TSRPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFTNILP 1064
+ P++L++F + + M+ DSD++FS +FEELK +G + AADLP NR KNR+TNILP
Sbjct: 1 SMNPVQLDDFDAYIKDMAKDSDYKFSLQFEELKLIGLDIPHFAADLPLNRCKNRYTNILP 60
Query: 1065 YDHSRFKLQPVDDEEGSDYINANYVPGHNSPRR 1097
YD SR +L +++EEG+DYINANY+PG+NSP+
Sbjct: 61 YDFSRVRLVSMNEEEGADYINANYIPGYNSPQE 93
Score = 98.1 bits (245), Expect = 2e-22
Identities = 32/67 (47%), Positives = 44/67 (65%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+GT IALDR+LQ I + VDI G+V MR R+ MVQTE+QYI IHQC+ + +
Sbjct: 229 RTGTFIALDRLLQHIRDHEFVDILGLVSEMRSYRMSMVQTEEQYIFIHQCVQLMWMKKKQ 288
Query: 1157 QLPLREI 1163
Q + ++
Sbjct: 289 QFCISDV 295
>3i36_A Vascular protein tyrosine phosphatase 1; PTP, hydrolase; 1.84A
{Rattus norvegicus} PDB: 2nz6_A 2cfv_A
Length = 342
Score = 160 bits (406), Expect = 3e-43
Identities = 45/113 (39%), Positives = 67/113 (59%), Gaps = 1/113 (0%)
Query: 985 RKTTESRNADNMSLQDSIVETSRPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQS 1044
RK + + +S + S+ IR+ENF +++ ADS+ F+EE+E+LK +G
Sbjct: 2 RKKRKDAKNNEVSFSQIKPKKSKLIRVENFEAYFKKQQADSNCGFAEEYEDLKLIGISLP 61
Query: 1045 CTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRR 1097
AA++ NR KNR+ N+LPYD SR KL DYINANY+PG++S +
Sbjct: 62 KYAAEIAENRGKNRYNNVLPYDISRVKLSV-QTHSTDDYINANYMPGYHSKKD 113
Score = 98.2 bits (245), Expect = 4e-22
Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 3/85 (3%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+GT IA+DR++ I + + VD++GIVY +R R MVQTE QY+ ++QC+L ++ ++
Sbjct: 250 RTGTFIAIDRLIYQIENENTVDVYGIVYDLRMHRPLMVQTEDQYVFLNQCVLDIIRAQKD 309
Query: 1157 ---QLPLREIHHNQGYEGLSQPMQF 1178
L + YE L + F
Sbjct: 310 SKVDLIYQNTTAMTIYENLERVSMF 334
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 157 bits (398), Expect = 5e-42
Identities = 78/405 (19%), Positives = 150/405 (37%), Gaps = 56/405 (13%)
Query: 80 PLPVLDLTAVMDDKTGDLFISWKPDNASYQDMYKISIKSILLEEEHQKQFLMGFLGDCDN 139
P +L + TG L +SW+ Y+I+ ++ + + ++
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVH------- 54
Query: 140 GSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESPSF------- 192
D++ ++L PG +Y+++V V + ES
Sbjct: 55 --------------------ADQSSCTFDNLSPGLEYNVSVYTVKDDKESVPISDTIIPA 94
Query: 193 -PIIEDLRPIEFG---LNISWKSDVNSRQDNFEVIYNRNDTITEDP-ITVVTTDSKLLLE 247
P DLR G + ++W + NF V Y+ + +++ +D+ ++L
Sbjct: 95 VPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLT 154
Query: 248 NLYPGAGYSIQVFAISHGLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPVGSIF 307
NL PG Y + V ++ S P Q PT + ++N+ V W P +I
Sbjct: 155 NLLPGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFSDITANSFTVHWIAPRATI- 213
Query: 308 TEYSIRYRTEEDKTWVRLPNV-GTSLEAEVTDMVPGEKCMIQVNSVSYSVESAHPLQINH 366
T Y IR+ E R V + +T++ PG + ++ + +++ ES +
Sbjct: 214 TGYRIRHHPEHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQS 273
Query: 367 TISPNPATYVAALVDASNVTLEFPRPEGRIEYYLVTWRGI-GPEATSTELFTKNVTNDPE 425
T+S P +++ + + P + YY +T+ G + +
Sbjct: 274 TVSDVPRDLEVVAATPTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKS---- 329
Query: 426 DKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGVTS----LSART 466
I L PGV Y T+ V+ +S +S ++ RT
Sbjct: 330 ------TATISGLKPGVDYTITVYAVTGRGDSPASSKPISINYRT 368
Score = 155 bits (393), Expect = 2e-41
Identities = 75/381 (19%), Positives = 135/381 (35%), Gaps = 25/381 (6%)
Query: 279 PKPPTNLTL-EKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNV--GTSLEAE 335
PPTNL L + + V W+ T Y I + L V
Sbjct: 2 LSPPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCT 61
Query: 336 VTDMVPGEKCMIQVNSVSYSVESAHPLQINHTISPNPATYVAAL-VDASNVTLEF-PRPE 393
++ PG + + V +V ES P+ + P T + + + + + P P
Sbjct: 62 FDNLSPGLEYNVSVYTVKDDKESV-PISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPPPS 120
Query: 394 GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSY 453
+ +LV + E ++ P D +++ L PG +Y ++ +V
Sbjct: 121 IDLTNFLVRYS-----PVKNEEDVAELSISPSDN----AVVLTNLLPGTEYVVSVSSVYE 171
Query: 454 NLESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQNSNHFDFYRFTLSEPDIP-- 511
ES +T + + + + +S T+ + + YR
Sbjct: 172 QHESTPLRGRQKTGLDSPTGIDFSD--ITANSFTVHWIAPRA-TITGYRIRHHPEHFSGR 228
Query: 512 VIEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTPIQRHDRLYPEPITRINATEIT 571
E + +T NLTPG Y ++ + S + + + T
Sbjct: 229 PREDRVPHSRNSITLTNLTPGTEYVVSIVALNGREESPLLIGQQSTVSDVPRDLEVVAAT 288
Query: 572 DTSVSLTWDSPRGEYNAFEVQYLNTEG-FLIQNLTL---HTSIVIGDLKPHRNYTFTVIV 627
TS+ ++WD+P + + Y T G +Q T+ ++ I LKP +YT TV
Sbjct: 289 PTSLLISWDAPAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYA 348
Query: 628 RSGTESSVLRRSLPVSAIFQT 648
+G S S P+S ++T
Sbjct: 349 VTGRGDSP-ASSKPISINYRT 368
Score = 151 bits (383), Expect = 6e-40
Identities = 71/352 (20%), Positives = 130/352 (36%), Gaps = 19/352 (5%)
Query: 205 LNISWKSDVNSRQDNFEVIYNRNDTITEDPI--TVVTTDSKLLLENLYPGAGYSIQVFAI 262
L +SW+ + + + + + V S +NL PG Y++ V+ +
Sbjct: 19 LTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTV 78
Query: 263 SHGLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTW 322
S P PPT+L + + V W P T + +RY +++
Sbjct: 79 KDDKESVPISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEED 138
Query: 323 VRLPNV-GTSLEAEVTDMVPGEKCMIQVNSVSYSVESAHPLQINHTISPNPATYVAAL-V 380
V ++ + +T+++PG + ++ V+SV ES PL+ + T + +
Sbjct: 139 VAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHEST-PLRGRQKTGLDSPTGIDFSDI 197
Query: 381 DASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTP 440
A++ T+ + P I Y + E + N I + LTP
Sbjct: 198 TANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSRN---------SITLTNLTP 248
Query: 441 GVKYQFTIRTVSYNLESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQNSNHFDF 500
G +Y +I ++ ES + T+ + ++ VV + S+ + + +
Sbjct: 249 GTEYVVSIVALNGREESPLLIGQQSTVSDVPRDLEVVA--ATPTSLLISWDAPAVT-VRY 305
Query: 501 YRFTLSEPD--IPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTP 550
YR T E PV E + T + L PG Y TV+ V S
Sbjct: 306 YRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPA 357
Score = 127 bits (320), Expect = 9e-32
Identities = 56/339 (16%), Positives = 117/339 (34%), Gaps = 45/339 (13%)
Query: 376 VAALVDASNVTLE-FPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHIL 434
+ A D +T+ I Y +T + ++ +
Sbjct: 10 LEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQ--------SSCT 61
Query: 435 IDQLTPGVKYQFTIRTVSYNLESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQN 494
D L+PG++Y ++ TV + ES S + +++ N D++ + + P
Sbjct: 62 FDNLSPGLEYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFTNI--GPDTMRVTWAPPP 119
Query: 495 SNHFDFYR--FTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTPIQ 552
S + ++ + + V E + + +D V NL PG Y +V +V + STP++
Sbjct: 120 SIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLR 179
Query: 553 RHDRLYPEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEGFLIQNLTL----HT 608
+ + T I+ ++IT S ++ W +PR + +++
Sbjct: 180 GRQKTGLDSPTGIDFSDITANSFTVHWIAPRATITGYRIRHHPEHFSGRPREDRVPHSRN 239
Query: 609 SIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVR 668
SI + +L P Y +++ +G E S + ++
Sbjct: 240 SITLTNLTPGTEYVVSIVALNGREES--------PLLIGQQSTVSD-------------- 277
Query: 669 FFQAEKFHPIDVQPGDITFEWSLPGSEQNGVIRKFTISY 707
+ P + W P +R + I+Y
Sbjct: 278 --VPRDLEVVAATPTSLLISWDAP----AVTVRYYRITY 310
Score = 113 bits (283), Expect = 7e-27
Identities = 51/306 (16%), Positives = 101/306 (33%), Gaps = 47/306 (15%)
Query: 78 PEPLPVLDLTAVMDDKTGDLFISWKPDNASYQDMYKISIKSILLEEEHQKQFLMGFLGDC 137
P P DL + ++W P + + + +
Sbjct: 93 PAVPPPTDLRFTNIGPD-TMRVTWAPPPSIDLTNFLVRYSPV------------------ 133
Query: 138 DNGSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESPSFPIIE- 196
N ++ + I VL +LLPG +Y ++V +V ES +
Sbjct: 134 KNEEDVAELSISP----------SDNAVVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQK 183
Query: 197 -------DLRPIEFG---LNISWKSDVNSRQDNFEVIYNRNDTITE-DPITVVTTDSKLL 245
+ + + W + + + + ++ V + + +
Sbjct: 184 TGLDSPTGIDFSDITANSFTVHWIA-PRATITGYRIRHHPEHFSGRPREDRVPHSRNSIT 242
Query: 246 LENLYPGAGYSIQVFAISHGLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPVGS 305
L NL PG Y + + A++ S Q+ P +L + + ++L+ W P +
Sbjct: 243 LTNLTPGTEYVVSIVALNGREESPLLIGQQSTVSDVPRDLEVVAATPTSLLISWDAPAVT 302
Query: 306 IFTEYSIRYRTEEDKTWVRLPNV-GTSLEAEVTDMVPGEKCMIQV---NSVSYSVESAHP 361
+ Y I Y + V+ V G+ A ++ + PG I V S S+ P
Sbjct: 303 V-RYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGRGDSPASSKP 361
Query: 362 LQINHT 367
+ IN+
Sbjct: 362 ISINYR 367
>1yfo_A D1, receptor protein tyrosine phosphatase alpha; hydrolase, signal
transduction, glycoprotein, phosphorylation, signal;
2.25A {Mus musculus} SCOP: c.45.1.2
Length = 302
Score = 153 bits (390), Expect = 2e-41
Identities = 35/94 (37%), Positives = 49/94 (52%)
Query: 1004 ETSRPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFTNIL 1063
P+ ++ E AD + F EEF L + +C AA N+ KNR+ NIL
Sbjct: 6 RKYPPLPVDKLEEEINRRMADDNKLFREEFNALPACPIQATCEAASKEENKEKNRYVNIL 65
Query: 1064 PYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRR 1097
PYDHSR L PV+ SDYINA+++ G+ +
Sbjct: 66 PYDHSRVHLTPVEGVPDSDYINASFINGYQEKNK 99
Score = 92.7 bits (231), Expect = 1e-20
Identities = 23/59 (38%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLL-AVLEGN 1154
R+GT + +D +L ++ VD++G V +R +R MVQT+ QY+ I+Q LL L G+
Sbjct: 238 RTGTFVVIDAMLDMMHSERKVDVYGFVSRIRAQRCQMVQTDMQYVFIYQALLEHYLYGD 296
>2ooq_A Receptor-type tyrosine-protein phosphatase T; protein tyrosine
phosphatase, human, structural GE structural genomics
consortium, SGC, hydrolase; HET: B3P; 1.80A {Homo
sapiens} PDB: 1rpm_A 2c7s_A
Length = 286
Score = 151 bits (384), Expect = 8e-41
Identities = 38/91 (41%), Positives = 52/91 (57%), Gaps = 1/91 (1%)
Query: 1006 SRPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFTNILPY 1065
S IR+ + +H M + F EE+E L G+ S A NR KNR+ NI+ Y
Sbjct: 1 SMAIRVADLLQHITQMKRGQGYGFKEEYEALPE-GQTASWDTAKEDENRNKNRYGNIISY 59
Query: 1066 DHSRFKLQPVDDEEGSDYINANYVPGHNSPR 1096
DHSR +L +D + SDYINANY+ G++ PR
Sbjct: 60 DHSRVRLLVLDGDPHSDYINANYIDGYHRPR 90
Score = 93.0 bits (232), Expect = 8e-21
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLL-AVLEGN 1154
R+G IA+D +L + VVDIF V +R +RV +VQTE+QY+ +H +L A L GN
Sbjct: 225 RTGCFIAIDTMLDMAENEGVVDIFNCVRELRAQRVNLVQTEEQYVFVHDAILEACLCGN 283
>3s3e_A Tyrosine-protein phosphatase 10D; differentiation, neurogenesis,
signal transduction, developm protein, hydrolase; 2.40A
{Drosophila melanogaster} PDB: 3s3f_A 3s3h_A* 3s3k_A*
Length = 307
Score = 152 bits (385), Expect = 9e-41
Identities = 83/104 (79%), Positives = 90/104 (86%)
Query: 994 DNMSLQDSIVETSRPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCN 1053
+ + SRPI ++NFAEHYR+MSADSDFRFSEEFEELKHVGR+Q CT ADLPCN
Sbjct: 11 SSGLVPRGSHMASRPILIKNFAEHYRLMSADSDFRFSEEFEELKHVGRDQPCTFADLPCN 70
Query: 1054 RPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRR 1097
RPKNRFTNILPYDHSRFKLQPVDD+EGSDYINANYVPGHNSPR
Sbjct: 71 RPKNRFTNILPYDHSRFKLQPVDDDEGSDYINANYVPGHNSPRE 114
Score = 99.7 bits (249), Expect = 7e-23
Identities = 53/60 (88%), Positives = 53/60 (88%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
RSGT I LDRILQ IN SD VDIFGIVY MRKERVWMVQTEQQYICIHQCLLAVLEG EN
Sbjct: 248 RSGTFITLDRILQQINTSDYVDIFGIVYAMRKERVWMVQTEQQYICIHQCLLAVLEGKEN 307
>2hc1_A Receptor-type tyrosine-protein phosphatase beta; protein tyrosine
phosphatase, WPD-loop, sulfamic acid, inhibitor, drug
design, hydrolase; 1.30A {Homo sapiens} PDB: 2h03_A
2hc2_A 2i4g_A* 2h04_A* 2h02_A 2i3u_A 2i3r_A 2i4e_A*
2i4h_A* 2i5x_A* 2ahs_A
Length = 291
Score = 147 bits (373), Expect = 2e-39
Identities = 51/97 (52%), Positives = 65/97 (67%), Gaps = 5/97 (5%)
Query: 1001 SIVETSRPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFT 1060
S +TS PI++ F H+ + ADS++ S+E+EELK VGR QSC A LP NR KNR+
Sbjct: 1 SNRKTSCPIKINQFEGHFMKLQADSNYLLSKEYEELKDVGRNQSCDIALLPENRGKNRYN 60
Query: 1061 NILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRR 1097
NILPYD +R KL GSDYINA+Y+PG+N R
Sbjct: 61 NILPYDATRVKLSG-----GSDYINASYIPGNNFRRE 92
Score = 93.1 bits (232), Expect = 1e-20
Identities = 32/59 (54%), Positives = 42/59 (71%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNE 1155
R+GT IALDRILQ ++ D VDI+G V+ +R RV MVQTE QY+ +HQC+ VL +
Sbjct: 231 RTGTFIALDRILQQLDSKDSVDIYGAVHDLRLHRVHMVQTECQYVYLHQCVRDVLRARK 289
>2jjd_A Receptor-type tyrosine-protein phosphatase epsilo; transmembrane,
phosphoprotein, consorti structural, glycoprotein, SGC,
PTPRE, membrane genomics; 3.20A {Homo sapiens}
Length = 599
Score = 154 bits (391), Expect = 3e-39
Identities = 39/97 (40%), Positives = 52/97 (53%)
Query: 1001 SIVETSRPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFT 1060
S + PI +E+ E RI SAD +F EEF L + + A+ NR KNR+
Sbjct: 2 SGPKKYFPIPVEHLEEEIRIRSADDCKQFREEFNSLPSGHIQGTFELANKEENREKNRYP 61
Query: 1061 NILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRR 1097
NILP DHSR L +D SDYINA+Y+ G+ +
Sbjct: 62 NILPNDHSRVILSQLDGIPCSDYINASYIDGYKEKNK 98
Score = 115 bits (290), Expect = 1e-26
Identities = 36/171 (21%), Positives = 64/171 (37%), Gaps = 23/171 (13%)
Query: 949 QDQDNTPLVV----GI--TIPFILVLILCM------------TVFILRSRRKNVRKTTE- 989
P+VV G+ T FI++ + V +R++R + +T
Sbjct: 219 NPVHAGPIVVHCSAGVGRTGTFIVIDAMMAMMHAEQKVDVFEFVSRIRNQRPQMVQTDMQ 278
Query: 990 ---SRNADNMSLQDSIVETSRPIRLENFAEHYRIMSADSDFRFSEEFEELKHVG-REQSC 1045
A E ++ + + EEF +L +V +++
Sbjct: 279 YTFIYQALLEYYLYGDTELDVSSLEKHLQTMHGTTTHFDKIGLEEEFRKLTNVRIMKENM 338
Query: 1046 TAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPR 1096
+LP N K R I+PYD +R L +E +DYINA+++ G+
Sbjct: 339 RTGNLPANMKKARVIQIIPYDFNRVILSMKRGQEYTDYINASFIDGYRQKD 389
Score = 90.1 bits (224), Expect = 1e-18
Identities = 21/69 (30%), Positives = 36/69 (52%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+GT IAL IL+ + ++D+F V +R +R MVQT +QY ++ + ++ +
Sbjct: 531 RTGTFIALSNILERVKAEGLLDVFQAVKSLRLQRPHMVQTLEQYEFCYKVVQDFIDIFSD 590
Query: 1157 QLPLREIHH 1165
HH
Sbjct: 591 YAAHHHHHH 599
Score = 85.9 bits (213), Expect = 3e-17
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+GT I +D ++ ++ VD+F V +R +R MVQT+ QY I+Q LL +
Sbjct: 236 RTGTFIVIDAMMAMMHAEQKVDVFEFVSRIRNQRPQMVQTDMQYTFIYQALLEYYLYGDT 295
Query: 1157 QLPLREIHHNQGY 1169
+L + + +
Sbjct: 296 ELDVSSLEKHLQT 308
>2oc3_A Tyrosine-protein phosphatase non-receptor type 18; protein tyrosine
phosphatase, human, structural genomics, structural
genomics consortium, SGC; 1.50A {Homo sapiens}
Length = 303
Score = 145 bits (368), Expect = 1e-38
Identities = 26/100 (26%), Positives = 40/100 (40%), Gaps = 6/100 (6%)
Query: 1004 ETSRPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQ------SCTAADLPCNRPKN 1057
P +F E + EF +++ S A P N KN
Sbjct: 5 SPGIPDSARSFLERLEARGGREGAVLAGEFSDIQACSAAWKADGVCSTVAGSRPENVRKN 64
Query: 1058 RFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRR 1097
R+ ++LPYD +R L + +E SDYIN N++ G +
Sbjct: 65 RYKDVLPYDQTRVILSLLQEEGHSDYINGNFIRGVDGSLA 104
Score = 85.8 bits (213), Expect = 4e-18
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 1097 RSGTLIALDRILQSINH---SDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLE 1152
R+G L +D + Q + +F +V MRK+R VQTE+QY ++ + +
Sbjct: 239 RTGVLCTVDYVRQLLLTQMIPPDFSLFDVVLKMRKQRPAAVQTEEQYRFLYHTVAQMFC 297
>1ygr_A CD45 protein tyrosine phosphatase; protein tyrosine phosphatase,
RPTP, LCA, lymphocyte activation, hydrolase; HET: PTR;
2.90A {Homo sapiens} PDB: 1ygu_A*
Length = 610
Score = 151 bits (384), Expect = 3e-38
Identities = 33/91 (36%), Positives = 51/91 (56%)
Query: 1007 RPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFTNILPYD 1066
PI + E Y+ AD F EF+ + V + A P N+ KNR+ +ILPYD
Sbjct: 8 EPIHADILLETYKRKIADEGRPFLAEFQSIPRVFSKFPIKEARKPFNQNKNRYVDILPYD 67
Query: 1067 HSRFKLQPVDDEEGSDYINANYVPGHNSPRR 1097
++R +L ++ + GS+YINA+Y+ G PR+
Sbjct: 68 YNRVELSEINGDAGSNYINASYIDGFKEPRK 98
Score = 94.8 bits (236), Expect = 5e-20
Identities = 35/189 (18%), Positives = 62/189 (32%), Gaps = 41/189 (21%)
Query: 949 QDQDNTPLVV----GI--TIPFILVLILCM------------TVFILRSRRKNVRKTTE- 989
+ + P+VV G+ T +I + + V LR +R + +
Sbjct: 219 SNFFSGPIVVHSSAGVGRTGTYIGIDAMLEGLEAENKVDVYGYVVKLRRQRCLMVQVEAQ 278
Query: 990 ---SRNADNMSLQDSIVETSRPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCT 1046
A Q E + + EF+ L ++
Sbjct: 279 YILIHQALVEYNQFGETEVNLSELHPYLHNMKKRDPPSEPSPLEAEFQRLPSYRSWRTQH 338
Query: 1047 AADLPCNRPKNRFTNILPYDHSRFKLQ-------------------PVDDEEGSDYINAN 1087
+ N+ KNR +N++PYD++R L+ D EE S YINA+
Sbjct: 339 IGNQEENKSKNRNSNVIPYDYNRVPLKHELEMSKESEHDSDESSDDDSDSEEPSKYINAS 398
Query: 1088 YVPGHNSPR 1096
++ + P
Sbjct: 399 FIMSYWKPE 407
Score = 90.2 bits (224), Expect = 1e-18
Identities = 28/84 (33%), Positives = 44/84 (52%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+GT I +D +L+ + + VD++G V +R++R MVQ E QYI IHQ L+ + E
Sbjct: 236 RTGTYIGIDAMLEGLEAENKVDVYGYVVKLRRQRCLMVQVEAQYILIHQALVEYNQFGET 295
Query: 1157 QLPLREIHHNQGYEGLSQPMQFRP 1180
++ L E+H P
Sbjct: 296 EVNLSELHPYLHNMKKRDPPSEPS 319
Score = 85.6 bits (212), Expect = 4e-17
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLE-GN 1154
++G AL +L+S +VVDIF +V +RK R+ MV T +QY ++ + + N
Sbjct: 552 QTGIFCALLNLLESAETEEVVDIFQVVKALRKARLGMVSTFEQYQFLYDVIASTYPAQN 610
>2h4v_A Receptor-type tyrosine-protein phosphatase gamma; tyrosine receptor
phosphatase, human, structural GENO structural genomics
consortium, SGC; HET: FLC; 1.55A {Homo sapiens} PDB:
3qcd_A 3qcc_A 3qcb_A 3qce_A* 3qcf_A* 3qcg_A* 3qch_A*
3qci_A* 3qcj_A* 3qck_A* 2pbn_A 2hy3_A 3qcm_A* 3qcl_A*
3qcn_A
Length = 320
Score = 139 bits (352), Expect = 3e-36
Identities = 36/95 (37%), Positives = 57/95 (60%), Gaps = 4/95 (4%)
Query: 1007 RPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQ--SCTAADLPCNRPKNRFTNILP 1064
++ F +H + +++ FSE+FEE++ + + ++ P N+ KNR+ NIL
Sbjct: 19 YFQSMKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILA 78
Query: 1065 YDHSRFKLQPV--DDEEGSDYINANYVPGHNSPRR 1097
YDHSR KL+P+ D + SDYINANYV G+N +
Sbjct: 79 YDHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKA 113
Score = 92.4 bits (230), Expect = 3e-20
Identities = 26/59 (44%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLL-AVLEGN 1154
R+GT I +D +LQ I V++ G + H+R +R ++VQTE+QYI IH LL A+L
Sbjct: 259 RTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALLEAILGKE 317
>1lar_A Protein (LAR); tyrosine phosphatease, LAR protein, hydrolase; 2.00A
{Homo sapiens} SCOP: c.45.1.2 c.45.1.2 PDB: 2fh7_A 2nv5_A
Length = 575
Score = 142 bits (360), Expect = 2e-35
Identities = 31/87 (35%), Positives = 53/87 (60%), Gaps = 1/87 (1%)
Query: 1011 LENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRF 1070
+ + A++ + A+ +FS+E+E + G++ + ++L N+PKNR+ N++ YDHSR
Sbjct: 2 ITDLADNIERLKANDGLKFSQEYESID-PGQQFTWENSNLEVNKPKNRYANVIAYDHSRV 60
Query: 1071 KLQPVDDEEGSDYINANYVPGHNSPRR 1097
L +D GSDYINANY+ G+
Sbjct: 61 ILTSIDGVPGSDYINANYIDGYRKQNA 87
Score = 98.2 bits (245), Expect = 3e-21
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 1041 REQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPR 1096
+A+LPCN+ KNR NI+PY+ +R LQP+ EGSDYINA+++ G+ +
Sbjct: 320 HTSRFISANLPCNKFKNRLVNIMPYELTRVCLQPIRGVEGSDYINASFLDGYRQQK 375
Score = 90.9 bits (226), Expect = 8e-19
Identities = 25/52 (48%), Positives = 35/52 (67%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLL 1148
R+G I +D +L+ + H VDI+G V MR +R +MVQTE QY+ IH+ LL
Sbjct: 222 RTGCFIVIDAMLERMKHEKTVDIYGHVTCMRSQRNYMVQTEDQYVFIHEALL 273
Score = 87.8 bits (218), Expect = 7e-18
Identities = 21/60 (35%), Positives = 33/60 (55%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+G I L +L+ + + VVD+F V +R +R MVQTE QY ++ L L ++
Sbjct: 513 RTGVFITLSIVLERMRYEGVVDMFQTVKTLRTQRPAMVQTEDQYQLCYRAALEYLGSFDH 572
>2pa5_A Tyrosine-protein phosphatase non-receptor type 9; protein tyrosine
phosphatase, MEG2, PTPN9, structural genomi structural
genomics consortium, SGC; 1.60A {Homo sapiens}
Length = 314
Score = 136 bits (344), Expect = 3e-35
Identities = 19/91 (20%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Query: 1007 RPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFTNILPYD 1066
+ ++ ++ ++A EE+E+++ + + P N KNR+ ++ D
Sbjct: 9 HAMTIQELVDY---VNARQKQGIYEEYEDIRRENPVGTFHCSMSPGNLEKNRYGDVPCLD 65
Query: 1067 HSRFKLQPVDDEEGSDYINANYVPGHNSPRR 1097
+R KL +DYINA+++ G+
Sbjct: 66 QTRVKLTKRSGHTQTDYINASFMDGYKQKNA 96
Score = 94.3 bits (235), Expect = 6e-21
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+GT +LD L + +++F V MR +R + +QT +QY ++ +L E E
Sbjct: 246 RTGTFCSLDICLAQLEELGTLNVFQTVSRMRTQRAFSIQTPEQYYFCYKAILEFAE-KEG 304
Query: 1157 QLPLREIHH 1165
+ HH
Sbjct: 305 MVSAHHHHH 313
>2i1y_A Receptor-type tyrosine-protein phosphatase; receptor-type protein
tyrosine phosphatase precursor, phosph structural
genomics, PSI; 2.23A {Homo sapiens} PDB: 2qep_A
Length = 301
Score = 134 bits (339), Expect = 1e-34
Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 1/97 (1%)
Query: 1003 VETSRPIRLENFAEHYRIMSADSDFRFSEEFEELKHV-GREQSCTAADLPCNRPKNRFTN 1061
+ + I + Y + R ++E++ L +C A N KNR +
Sbjct: 5 AQANMDISTGHMILAYMEDHLRNRDRLAKEWQALCAYQAEPNTCATAQGEGNIKKNRHPD 64
Query: 1062 ILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRRS 1098
LPYDH+R KL+ SDYINA+ + H+ +
Sbjct: 65 FLPYDHARIKLKVESSPSRSDYINASPIIEHDPRMPA 101
Score = 90.0 bits (224), Expect = 1e-19
Identities = 15/64 (23%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 1097 RSGTLIALDRILQSIN-HSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNE 1155
R+GT I +D +L + +DI + H+R +R +V+++ Q+ + +
Sbjct: 237 RTGTYILIDMVLNRMAKGVKEIDIAATLEHVRDQRPGLVRSKDQFEFALTAVAEEVNAIL 296
Query: 1156 NQLP 1159
LP
Sbjct: 297 KALP 300
>2nlk_A Protein tyrosine phosphatase, receptor type, G VA (fragment); PTPRG,
R-PTP gamma, protein tyrosine phosphatase gamma, D3S1
HPTPG, RPTPG, PTPG; 2.40A {Homo sapiens}
Length = 627
Score = 140 bits (355), Expect = 1e-34
Identities = 37/94 (39%), Positives = 58/94 (61%), Gaps = 4/94 (4%)
Query: 1008 PIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQ--SCTAADLPCNRPKNRFTNILPY 1065
I ++ F +H + +++ FSE+FEE++ + + ++ P N+ KNR+ NIL Y
Sbjct: 2 AIPVKQFVKHIGELYSNNQHGFSEDFEEVQRCTADMNITAEHSNHPENKHKNRYINILAY 61
Query: 1066 DHSRFKLQPV--DDEEGSDYINANYVPGHNSPRR 1097
DHSR KL+P+ D + SDYINANYV G+N +
Sbjct: 62 DHSRVKLRPLPGKDSKHSDYINANYVDGYNKAKA 95
Score = 102 bits (256), Expect = 2e-22
Identities = 22/82 (26%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Query: 1016 EHYRIMSADSDFRFSEEFEELKHV-GREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQP 1074
I R ++F+ + + C +A CN+ KNR ++++P + +R L P
Sbjct: 312 NSILIPGVGGKTRLEKQFKLVTQCNAKYVECFSAQKECNKEKNRNSSVVPSERARVGLAP 371
Query: 1075 VDDEEGSDYINANYVPGHNSPR 1096
+ +G+DYINA+Y+ G+
Sbjct: 372 LPGMKGTDYINASYIMGYYRSN 393
Score = 90.6 bits (225), Expect = 1e-18
Identities = 24/52 (46%), Positives = 35/52 (67%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLL 1148
R+GT I +D +LQ I V++ G + H+R +R ++VQTE+QYI IH LL
Sbjct: 241 RTGTYIVIDSMLQQIKDKSTVNVLGFLKHIRTQRNYLVQTEEQYIFIHDALL 292
Score = 90.2 bits (224), Expect = 1e-18
Identities = 16/70 (22%), Positives = 33/70 (47%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
+G L AL + Q + + + VD+F + + R + +QY I++ +L+++ EN
Sbjct: 532 SAGMLCALTTLSQQLENENAVDVFQVAKMINLMRPGVFTDIEQYQFIYKAMLSLVSTKEN 591
Query: 1157 QLPLREIHHN 1166
+ N
Sbjct: 592 GNGPMTVDKN 601
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 130 bits (329), Expect = 1e-33
Identities = 50/266 (18%), Positives = 98/266 (36%), Gaps = 20/266 (7%)
Query: 376 VAALVDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILI 435
+ V + +E+ P ++++ L+ + +G E T + + +
Sbjct: 22 LVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPLS---------QYSV 72
Query: 436 DQLTPGVKYQFTIRTVSYNLESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQNS 495
L PG +Y+ +I V ES +S T + V + ++ S+ L + +
Sbjct: 73 QALRPGSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVGS--RTATSLDLEWDNSEA 130
Query: 496 NHFDFYRFTLSEPD----IPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTPI 551
Y+ S V+ K T +L PG Y + V + S P
Sbjct: 131 E-AQEYKVVYSTLAGEQYHEVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIPA 189
Query: 552 QRHDRLYPEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEGFLIQNLTL---HT 608
+ R + + T ++TS+SL W G + + + + + G +T+ T
Sbjct: 190 TMNARTELDSPRDLMVTASSETSISLIWTKASGPIDHYRITFTPSSGI-SSEVTVPRDRT 248
Query: 609 SIVIGDLKPHRNYTFTVIVRSGTESS 634
S + DL+P Y ++ G + S
Sbjct: 249 SYTLTDLEPGAEYIISITAERGRQQS 274
Score = 126 bits (318), Expect = 4e-32
Identities = 42/267 (15%), Positives = 102/267 (38%), Gaps = 19/267 (7%)
Query: 205 LNISWKSDVNSRQDNFEVIYN-RNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAIS 263
+ W ++ D + Y + + S+ ++ L PG+ Y + + A+
Sbjct: 31 AFVEWTP-PRAKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVR 89
Query: 264 HGLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWV 323
S+ P NL + ++ ++ ++W EY + Y T + +
Sbjct: 90 GTNESDASSTQFTTEIDAPKNLRVGSRTATSLDLEWDNSEAEA-QEYKVVYSTLAGEQYH 148
Query: 324 RL---PNVGTSLEAEVTDMVPGEKCMIQVNSVSYSVESAHPLQINHTISPNPATYVAAL- 379
+ +G + + +TD+VPG + + +++V S +S P +N + +
Sbjct: 149 EVLVPKGIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSI-PATMNARTELDSPRDLMVTA 207
Query: 380 VDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLT 439
++++L + + G I++Y +T+ ++ + + + L
Sbjct: 208 SSETSISLIWTKASGPIDHYRITFTPSSGISSEVTVPRDRTS-----------YTLTDLE 256
Query: 440 PGVKYQFTIRTVSYNLESGVTSLSART 466
PG +Y +I +S +++ A T
Sbjct: 257 PGAEYIISITAERGRQQSLESTVDAFT 283
Score = 122 bits (307), Expect = 8e-31
Identities = 50/274 (18%), Positives = 95/274 (34%), Gaps = 14/274 (5%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSL-EAEVT 337
PT + + S V+W P + ++Y + + L + V
Sbjct: 15 IDGPTQILVRDVSDTVAFVEWTPPRAKV-DFILLKYGLVGGEGGKTTFRLQPPLSQYSVQ 73
Query: 338 DMVPGEKCMIQVNSVSYSVESAHPLQINHTISPNPATYVAAL-VDASNVTLEFPRPEGRI 396
+ PG + + +++V + ES T + + A+++ LE+ E
Sbjct: 74 ALRPGSRYEVSISAVRGTNESD-ASSTQFTTEIDAPKNLRVGSRTATSLDLEWDNSEAEA 132
Query: 397 EYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLE 456
+ Y V + + E L K + + + L PG +Y I V + +
Sbjct: 133 QEYKVVYSTLAGEQYHEVLVPKGIGPTTK-------TTLTDLVPGTEYGVGISAVMNSKQ 185
Query: 457 SGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQNSNHFDFYRFTLSEPDIPVIEKA 516
S +++ART +++V S S++L +T + D YR T + E
Sbjct: 186 SIPATMNARTELDSPRDLMVTA--SSETSISLIWTKASGP-IDHYRITFTPSSGISSEVT 242
Query: 517 ANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTP 550
T +L PG Y ++ S
Sbjct: 243 VPRDRTSYTLTDLEPGAEYIISITAERGRQQSLE 276
Score = 106 bits (266), Expect = 2e-25
Identities = 41/236 (17%), Positives = 89/236 (37%), Gaps = 18/236 (7%)
Query: 139 NGSKISYVEIETLNGDSNQMF-VDKTEYVLESLLPGRKYSINVQAVSNGMESPSFPIIE- 196
+ + Y + G + ++Y +++L PG +Y +++ AV ES +
Sbjct: 43 DFILLKYGLVGGEGGKTTFRLQPPLSQYSVQALRPGSRYEVSISAVRGTNESDASSTQFT 102
Query: 197 -------DLRPIEFG---LNISWKSDVNSRQDNFEVIYNRNDTITEDPITV---VTTDSK 243
+LR L++ W + + ++V+Y+ + V + +K
Sbjct: 103 TEIDAPKNLRVGSRTATSLDLEWDN-SEAEAQEYKVVYSTLAGEQYHEVLVPKGIGPTTK 161
Query: 244 LLLENLYPGAGYSIQVFAISHGLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPV 303
L +L PG Y + + A+ + +S P P +L + +S ++ + W +
Sbjct: 162 TTLTDLVPGTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVTASSETSISLIWTKAS 221
Query: 304 GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQVNSVSYSVESA 359
G I Y I + + +TD+ PG + +I + + +S
Sbjct: 222 GPI-DHYRITFTPSSGISSEVTVP-RDRTSYTLTDLEPGAEYIISITAERGRQQSL 275
Score = 64.4 bits (157), Expect = 4e-11
Identities = 32/201 (15%), Positives = 58/201 (28%), Gaps = 40/201 (19%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEG-FLIQNLTLH---TSIVIGD 614
+ T+I +++DT + W PR + + ++Y G L + +
Sbjct: 15 IDGPTQILVRDVSDTVAFVEWTPPRAKVDFILLKYGLVGGEGGKTTFRLQPPLSQYSVQA 74
Query: 615 LKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFFQAEK 674
L+P Y ++ GT S S F T P +
Sbjct: 75 LRPGSRYEVSISAVRGTNESD-----ASSTQFTTEIDAP-------------------KN 110
Query: 675 FHPIDVQPGDITFEWSLPGSEQNGVIRKFTISYAQEAACNHNQRLHAKFQLPRVNSKKLK 734
+ EW +++ + Y+ A +++ L K L
Sbjct: 111 LRVGSRTATSLDLEWDNS----EAEAQEYKVVYSTLAGEQYHEVLVPKGI-GPTTKTTLT 165
Query: 735 G-WPGTLRTDWRSYIYKLQAE 754
PGT Y + A
Sbjct: 166 DLVPGTE------YGVGISAV 180
Score = 40.6 bits (95), Expect = 0.002
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 139 NGSKISY-VEIETLNGDSNQMFVDK--TEYVLESLLPGRKYSINVQAVSNGMESPS 191
+G Y + +G S+++ V + T Y L L PG +Y I++ A +S
Sbjct: 221 SGPIDHYRITFTPSSGISSEVTVPRDRTSYTLTDLEPGAEYIISITAERGRQQSLE 276
>2bzl_A Tyrosine-protein phosphatase, non-receptor type 14; PTPN14,
hydrolase; 1.65A {Homo sapiens}
Length = 325
Score = 128 bits (323), Expect = 2e-32
Identities = 17/103 (16%), Positives = 41/103 (39%), Gaps = 3/103 (2%)
Query: 995 NMSLQDSIVETSRPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNR 1054
+L + + + ++ + + E+E++ + A LP N
Sbjct: 15 TENLYFQSMVDATRVPMDERFRTLK--KKLEEGMVFTEYEQIPKKKANGIFSTAALPENA 72
Query: 1055 PKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRR 1097
++R ++PY+ +R +L P + + YINA+++
Sbjct: 73 ERSRIREVVPYEENRVELIPTKE-NNTGYINASHIKVVVGGAE 114
Score = 93.1 bits (232), Expect = 1e-20
Identities = 16/56 (28%), Positives = 37/56 (66%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLE 1152
R+G LI + ++ + H++ V++ ++ +R++R++M+QT QY ++Q L+ L+
Sbjct: 265 RTGVLILSELMIYCLEHNEKVEVPMMLRLLREQRMFMIQTIAQYKFVYQVLIQFLQ 320
>1wch_A Protein tyrosine phosphatase, non-receptor type 13; hydrolase,
phosphate ION, colorectal cancer alternative splicing,
coiled coil, cytoskeleton; 1.85A {Homo sapiens} SCOP:
c.45.1.2
Length = 315
Score = 125 bits (315), Expect = 2e-31
Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 6/107 (5%)
Query: 992 NADNMSLQDSIVETSRPIRLENFAEHYRIMSADSDF-RFSEEFEELKHVGREQSCTAADL 1050
N + L V S N R++ D S+E E L+ + C
Sbjct: 13 NDELAVLPVVKVLPSGKYTGANLKSVIRVLRGLLDQGIPSKELENLQELKPLDQCLIGQT 72
Query: 1051 PCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRR 1097
NR KNR+ NILPYD +R L YINA+++
Sbjct: 73 KENRRKNRYKNILPYDATRVPLGD-----EGGYINASFIKIPVGKEE 114
Score = 93.1 bits (232), Expect = 2e-20
Identities = 27/56 (48%), Positives = 34/56 (60%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLE 1152
RSGTLI +D +L I+ DI +V MR +R MVQTE QYI +Q +L VL
Sbjct: 252 RSGTLICIDVVLGLISQDLDFDISDLVRCMRLQRHGMVQTEDQYIFCYQVILYVLT 307
>1jln_A STEP-like ptpase, protein tyrosine phosphatase, receptor type, R;
PTP-SL, PTPBR7, ERK2-MAP kinase regulation, hydrolase;
1.81A {Mus musculus} SCOP: c.45.1.2 PDB: 2a8b_A
Length = 297
Score = 123 bits (312), Expect = 3e-31
Identities = 26/103 (25%), Positives = 42/103 (40%), Gaps = 8/103 (7%)
Query: 997 SLQDSIVETSRPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPK 1056
+ + SR + + S EF E+ D+P + K
Sbjct: 7 VAMEYLQSASRVLTRSQLRDV-----VASSHLLQSEFMEIPM--NFVDPKEIDIPRHGTK 59
Query: 1057 NRFTNILPYDHSRFKLQPVD-DEEGSDYINANYVPGHNSPRRS 1098
NR+ ILP SR L+P + + S YINANY+ G++ ++
Sbjct: 60 NRYKTILPNPLSRVCLRPKNITDSLSTYINANYIRGYSGKEKA 102
Score = 90.4 bits (225), Expect = 8e-20
Identities = 20/56 (35%), Positives = 26/56 (46%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLE 1152
R+G IA Q + VVD IV +R +R MVQT +QY +H L
Sbjct: 235 RTGCFIATSIGCQQLKEEGVVDALSIVCQLRVDRGGMVQTSEQYEFVHHALCLFES 290
>2p6x_A Tyrosine-protein phosphatase non-receptor type 22; tyrosine
phosphatase, lymphoid phosphatase, PEP, LYP, struct
genomics; 1.90A {Homo sapiens} PDB: 3h2x_A 3brh_A 2qct_A*
2qcj_A* 3olr_A* 3omh_A*
Length = 309
Score = 123 bits (311), Expect = 5e-31
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 7/93 (7%)
Query: 1011 LENFAEHYRIMSADSDFRFSEEFEELKH------VGREQSCTAADLPCNRPKNRFTNILP 1064
L+ F + + + F+ EF +LK + T A+ P N KNR+ +ILP
Sbjct: 7 LQKFLDEAQ-SKKITKEEFANEFLKLKRQSTKYKADKTYPTTVAEKPKNIKKNRYKDILP 65
Query: 1065 YDHSRFKLQPVDDEEGSDYINANYVPGHNSPRR 1097
YD+SR +L + +E S YINAN++ G P+
Sbjct: 66 YDYSRVELSLITSDEDSSYINANFIKGVYGPKA 98
Score = 91.6 bits (228), Expect = 5e-20
Identities = 16/77 (20%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 1097 RSGTLIALDRILQSINHS---DVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEG 1153
R+G + A+D + + +F ++ MR +R +VQT++QY ++ +L + +
Sbjct: 233 RTGVICAIDYTWMLLKDGIIPENFSVFSLIREMRTQRPSLVQTQEQYELVYNAVLELFKR 292
Query: 1154 NENQLPLREI-HHNQGY 1169
+ + + HH+ +
Sbjct: 293 QMDVIRDKHSAHHHHHH 309
>2cm2_A Tyrosine-protein phosphatase non-receptor type 1; polymorphism,
phosphorylation, endoplasmic reticulum, oxidation,
hydrolase, acetylation; 1.5A {Homo sapiens} SCOP:
c.45.1.2 PDB: 2cm3_A 2cmb_A* 2cmc_A* 2cne_A* 3a5j_A
2cma_A 3a5k_A 3eu0_A 3sme_A 2azr_A* 2b07_A* 2h4g_A*
2h4k_A* 2hb1_A* 2qbp_A* 2qbq_A* 2qbr_A* 2qbs_A* 2zmm_A*
2zn7_A* ...
Length = 304
Score = 121 bits (307), Expect = 2e-30
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 6/86 (6%)
Query: 1012 ENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFTNILPYDHSRFK 1071
+ + D ++ +++++H + C A LP N+ +NR+ ++ P+DHSR K
Sbjct: 7 HEMEKEFE--QIDKSGSWAAIYQDIRHEASDFPCRVAKLPKNKNRNRYRDVSPFDHSRIK 64
Query: 1072 LQPVDDEEGSDYINANYVPGHNSPRR 1097
L +E +DYINA+ + + R
Sbjct: 65 LH----QEDNDYINASLIKMEEAQRS 86
Score = 84.2 bits (209), Expect = 1e-17
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 1097 RSGTLIALDRILQSINHS---DVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLE 1152
RSGT D L ++ VDI ++ MRK R+ ++QT Q + ++ +
Sbjct: 227 RSGTFCLADTCLLLMDKRKDPSSVDIKKVLLEMRKFRMGLIQTADQLRFSYLAVIEGAK 285
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 119 bits (299), Expect = 1e-29
Identities = 52/299 (17%), Positives = 102/299 (34%), Gaps = 22/299 (7%)
Query: 260 FAISHGLRSEPHD-YFQAVYPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEE 318
A H S + FQ PT+L + + ++ +W P + T Y +R +E
Sbjct: 1 MAHHHHHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTPPNVQL-TGYRVRVTPKE 59
Query: 319 DKTWVRLPNV-GTSLEAEVTDMVPGEKCMIQVNSVSYSVESAHPLQ--INHTISPNPATY 375
++ N+ S V+ ++ K + V ++ ++ S P Q + + +P
Sbjct: 60 KTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSR-PAQGVVTTLENVSPPRR 118
Query: 376 VAAL-VDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHIL 434
+ +T+ + I + V + +V +
Sbjct: 119 ARVTDATETTITISWRTKTETITGFQVDAVPANGQTPIQRTIKPDVRS----------YT 168
Query: 435 IDQLTPGVKYQFTIRTVSYNLESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQN 494
I L PG Y+ + T++ N S + A T S + + + +S+ + + P
Sbjct: 169 ITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLRFLA--TTPNSLLVSWQPPR 226
Query: 495 SNHFDFYRFTLSEPDIPVIEKAA--NDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTPI 551
+ Y +P P E + T L PG Y V + + S P+
Sbjct: 227 AR-ITGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKSEPL 284
Score = 116 bits (293), Expect = 6e-29
Identities = 41/266 (15%), Positives = 92/266 (34%), Gaps = 16/266 (6%)
Query: 205 LNISWKSDVNSRQDNFEVIY-NRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAIS 263
L+ W N + + V + T I + S +++ L Y + V+A+
Sbjct: 37 LSAQWTP-PNVQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALK 95
Query: 264 HGLRSEP--HDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKT 321
L S P PP + + + + W+ +I T + + +T
Sbjct: 96 DTLTSRPAQGVVTTLENVSPPRRARVTDATETTITISWRTKTETI-TGFQVDAVPANGQT 154
Query: 322 WVRLPNVGTSLEAEVTDMVPGEKCMIQVNSVSYSVESAHPLQINHTISPNPATYVAAL-V 380
++ +T + PG I + +++ + S+ P+ I+ + + + + + L
Sbjct: 155 PIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNARSS-PVVIDASTAIDAPSNLRFLAT 213
Query: 381 DASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTP 440
+++ + + P RI Y++ + G + I L P
Sbjct: 214 TPNSLLVSWQPPRARITGYIIKYEKPGSPPREVVPRPRPGVT---------EATITGLEP 264
Query: 441 GVKYQFTIRTVSYNLESGVTSLSART 466
G +Y + + N +S +T
Sbjct: 265 GTEYTIYVIALKNNQKSEPLIGRKKT 290
Score = 114 bits (286), Expect = 6e-28
Identities = 52/239 (21%), Positives = 92/239 (38%), Gaps = 21/239 (8%)
Query: 139 NGSKISY-VEIETLNGDSNQMFV----DKTEYVLESLLPGRKYSINVQAVSNGMES-PSF 192
N Y V + + D + V+ L+ KY ++V A+ + + S P+
Sbjct: 45 NVQLTGYRVRVTPKEKTGPMKEINLAPDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQ 104
Query: 193 PIIEDLRPI------------EFGLNISWKSDVNSRQDNFEVIYNRNDTITEDPITVVTT 240
++ L + E + ISW++ F+V + T T+
Sbjct: 105 GVVTTLENVSPPRRARVTDATETTITISWRT-KTETITGFQVDAVPANGQTPIQRTIKPD 163
Query: 241 DSKLLLENLYPGAGYSIQVFAISHGLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWK 300
+ L PG Y I ++ ++ RS P + P+NL T+ N++LV W+
Sbjct: 164 VRSYTITGLQPGTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLRFLATTPNSLLVSWQ 223
Query: 301 EPVGSIFTEYSIRYRTEEDKTWVRLPNV-GTSLEAEVTDMVPGEKCMIQVNSVSYSVES 358
P I T Y I+Y +P EA +T + PG + I V ++ + +S
Sbjct: 224 PPRARI-TGYIIKYEKPGSPPREVVPRPRPGVTEATITGLEPGTEYTIYVIALKNNQKS 281
Score = 113 bits (284), Expect = 1e-27
Identities = 43/286 (15%), Positives = 94/286 (32%), Gaps = 22/286 (7%)
Query: 369 SPNPATYVAALVDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKD 428
P P V ++++ ++ P ++ Y V E + P+
Sbjct: 21 IPAPTDLKFTQVTPTSLSAQWTPPNVQLTGYRVRVTPKEKTGPMKE-----INLAPD--- 72
Query: 429 KHVHILIDQLTPGVKYQFTIRTVSYNLESG-VTSLSARTMPLIESEVLVVNNQQSTDSVT 487
+++ L KY+ ++ + L S + + V + + ++T
Sbjct: 73 -SSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARVTDA-TETTIT 130
Query: 488 LRYTPQNSNHFDFYRFTLSEPD-IPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGV 546
+ + + ++ + I++ R T L PG Y ++T+ D
Sbjct: 131 ISWRTKTET-ITGFQVDAVPANGQTPIQRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNA 189
Query: 547 LSTPIQRHDRLYPEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYL----NTEGFLIQ 602
S+P+ + + + T S+ ++W PR + ++Y + +
Sbjct: 190 RSSPVVIDASTAIDAPSNLRFLATTPNSLLVSWQPPRARITGYIIKYEKPGSPPREVVPR 249
Query: 603 NLTLHTSIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQT 648
T I L+P YT VI + S P+ +T
Sbjct: 250 PRPGVTEATITGLEPGTEYTIYVIALKNNQKSE-----PLIGRKKT 290
Score = 35.5 bits (82), Expect = 0.073
Identities = 19/112 (16%), Positives = 30/112 (26%), Gaps = 30/112 (26%)
Query: 79 EPLPVLDLTAVMDDKTGDLFISWKPDNASYQDMYKISIKSILLEEEHQKQFLMGFLGDCD 138
+L + L +SW+P A Y I +
Sbjct: 201 AIDAPSNLRFLATTPN-SLLVSWQPPRARITG-YIIKYEK-------------------- 238
Query: 139 NGSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESP 190
+ TE + L PG +Y+I V A+ N +S
Sbjct: 239 -PGSPPREVVPRPRPGV-------TEATITGLEPGTEYTIYVIALKNNQKSE 282
>1l8k_A T-cell protein-tyrosine phosphatase; hydrolase; 2.56A {Homo sapiens}
SCOP: c.45.1.2
Length = 314
Score = 118 bits (299), Expect = 2e-29
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 9/90 (10%)
Query: 1008 PIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFTNILPYDH 1067
P +E + D+ R+ + E+++ + A P NR +NR+ ++ PYDH
Sbjct: 2 PTTIE---REFE--ELDTQRRWQPLYLEIRNESHDYPHRVAKFPENRNRNRYRDVSPYDH 56
Query: 1068 SRFKLQPVDDEEGSDYINANYVPGHNSPRR 1097
SR KLQ + +DYINA+ V + R
Sbjct: 57 SRVKLQNAE----NDYINASLVDIEEAQRS 82
Score = 94.7 bits (236), Expect = 5e-21
Identities = 19/84 (22%), Positives = 37/84 (44%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
RSGT +D L + D ++I ++ +MRK R+ ++QT Q + ++ + +
Sbjct: 222 RSGTFSLVDTCLVLMEKGDDINIKQVLLNMRKYRMGLIQTPDQLRFSYMAIIEGAKCIKG 281
Query: 1157 QLPLREIHHNQGYEGLSQPMQFRP 1180
+++ E LS P
Sbjct: 282 DSSIQKRWKELSKEDLSPAFDHSP 305
>2b49_A Protein tyrosine phosphatase, non-receptor type 3; human, STRU
genomics, structural genomics consortium, SGC, hydrolase;
1.54A {Homo sapiens}
Length = 287
Score = 116 bits (292), Expect = 1e-28
Identities = 27/92 (29%), Positives = 39/92 (42%), Gaps = 10/92 (10%)
Query: 1011 LENFAEHYRIM-SADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFTNILPYDHSR 1069
++ + +FE+L + T A LP N KNR+ ++LPYD +R
Sbjct: 1 MDTLEGSMAQLKKGLESGTVLIQFEQLYRKKPGLAITFAKLPQNLDKNRYKDVLPYDTTR 60
Query: 1070 FKLQPVDDEEGSDYINANYV----PGHNSPRR 1097
LQ DYINA+YV P N +
Sbjct: 61 VLLQG-----NEDYINASYVNMEIPAANLVNK 87
Score = 92.3 bits (230), Expect = 1e-20
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLE 1152
R+G L+ ++ + + + IV MR +R MVQT QY + + +L V E
Sbjct: 222 RTGVLVTMETAMCLTERNLPIYPLDIVRKMRDQRAMMVQTSSQYKFVCEAILRVYE 277
>1zc0_A Tyrosine-protein phosphatase, non-receptor type 7; heptp, human
tyrosine phosphatase catalytic domain, LC-PTP, hydrolase;
1.85A {Homo sapiens} PDB: 2gp0_A 2qdc_A 2hvl_A 2qdp_A
2qdm_A 3o4s_A 3o4t_A* 3o4u_A* 3d44_A* 3d42_A* 2a3k_A
Length = 309
Score = 115 bits (289), Expect = 5e-28
Identities = 24/91 (26%), Positives = 36/91 (39%), Gaps = 2/91 (2%)
Query: 1008 PIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFTNILPYDH 1067
S + EEF ++ S D+P + K+R+ ILP
Sbjct: 25 RTAGHPLTRWALQRQPPSPKQLEEEFLKIP--SNFVSPEDLDIPGHASKDRYKTILPNPQ 82
Query: 1068 SRFKLQPVDDEEGSDYINANYVPGHNSPRRS 1098
SR L +E DYINANY+ G++ +
Sbjct: 83 SRVCLGRAQSQEDGDYINANYIRGYDGKEKV 113
Score = 90.9 bits (226), Expect = 8e-20
Identities = 20/61 (32%), Positives = 28/61 (45%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+G IA Q + VDI GIV +R +R M+QT +QY +H L
Sbjct: 246 RTGCFIATRIGCQQLKARGEVDILGIVCQLRLDRGGMIQTAEQYQFLHHTLALYAGQLPE 305
Query: 1157 Q 1157
+
Sbjct: 306 E 306
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 109 bits (274), Expect = 2e-27
Identities = 40/190 (21%), Positives = 71/190 (37%), Gaps = 11/190 (5%)
Query: 462 LSARTMPLIESEVLVVNNQQSTDSVTLRYTPQNSNHFDFYRFTLSEPDIPVIEKAANDTD 521
++A T ++ V + + +++LR+ + FD YR T P E
Sbjct: 1 INAGTDLDNPKDLEVSD--PTETTLSLRWRRPVAK-FDRYRLTYVSPSGKKNEMEIPVDS 57
Query: 522 RKVTFNNLTPGKLYNFTVWTVADGVLSTPIQRHDRLYPEPITRINATEITDTSVSLTWDS 581
L G Y ++ S P I+ ++IT+ S +++W
Sbjct: 58 TSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFSDITENSATVSWTP 117
Query: 582 PRGEYNAFEVQYLNTEGFLIQNLTLH---TSIVIGDLKPHRNYTFTVIVRSGTESSVLRR 638
PR +++ V Y+ G +T+ T + L P +Y +I G E S
Sbjct: 118 PRSRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESE--- 174
Query: 639 SLPVSAIFQT 648
P+S I +T
Sbjct: 175 --PISGILKT 182
Score = 91.0 bits (226), Expect = 4e-21
Identities = 31/191 (16%), Positives = 64/191 (33%), Gaps = 14/191 (7%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTD 338
P +L + + + ++W+ PV Y + Y + S +
Sbjct: 7 LDNPKDLEVSDPTETTLSLRWRRPVAKF-DRYRLTYV-SPSGKKNEMEIPVDSTSFILRG 64
Query: 339 MVPGEKCMIQVNSVSYSVESAHPLQINHTISPNPATYVAAL-VDASNVTLEFPRPEGRIE 397
+ G + I + + +S P I + ++ + ++ T+ + P R++
Sbjct: 65 LDAGTEYTISLVAEKGRHKSK-PTTIKGSTVVGSPKGISFSDITENSATVSWTPPRSRVD 123
Query: 398 YYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLES 457
Y V++ I + + T + +L PGV Y I +V ES
Sbjct: 124 SYRVSYVPITGGTPNVVTVDGSKT----------RTKLVKLVPGVDYNVNIISVKGFEES 173
Query: 458 GVTSLSARTMP 468
S +T
Sbjct: 174 EPISGILKTAL 184
Score = 86.0 bits (213), Expect = 3e-19
Identities = 28/154 (18%), Positives = 61/154 (39%), Gaps = 3/154 (1%)
Query: 205 LNISWKSDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAISH 264
L++ W+ ++ D + + Y + + ++ + + + +L L G Y+I + A
Sbjct: 23 LSLRWRR-PVAKFDRYRLTY-VSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKG 80
Query: 265 GLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVR 324
+S+P + P ++ + N+ V W P + Y + Y T
Sbjct: 81 RHKSKPTTIKGSTVVGSPKGISFSDITENSATVSWTPPRSRV-DSYRVSYVPITGGTPNV 139
Query: 325 LPNVGTSLEAEVTDMVPGEKCMIQVNSVSYSVES 358
+ G+ ++ +VPG + + SV ES
Sbjct: 140 VTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEES 173
Score = 67.9 bits (166), Expect = 5e-13
Identities = 33/139 (23%), Positives = 58/139 (41%), Gaps = 14/139 (10%)
Query: 145 YVEIETLNGDSNQMFV--DKTEYVLESLLPGRKYSINVQAVSNGMESPSFPIIEDLRP-- 200
+ + +G N+M + D T ++L L G +Y+I++ A +S I
Sbjct: 38 RLTYVSPSGKKNEMEIPVDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGS 97
Query: 201 ---IEFG------LNISWKSDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYP 251
I F +SW SR D++ V Y T + +TV + ++ L L P
Sbjct: 98 PKGISFSDITENSATVSWTP-PRSRVDSYRVSYVPITGGTPNVVTVDGSKTRTKLVKLVP 156
Query: 252 GAGYSIQVFAISHGLRSEP 270
G Y++ + ++ SEP
Sbjct: 157 GVDYNVNIISVKGFEESEP 175
Score = 37.8 bits (88), Expect = 0.010
Identities = 15/49 (30%), Positives = 24/49 (48%)
Query: 142 KISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESP 190
++SYV I + + KT L L+PG Y++N+ +V ES
Sbjct: 126 RVSYVPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFEESE 174
>3b7o_A Tyrosine-protein phosphatase non-receptor type 11; SHP2, PTPN11,
tyrosine phosphatase, structural genomics, STR genomics
consortium, SGC, deafness; 1.60A {Homo sapiens} PDB:
3jrl_A* 3mow_A* 3o5x_A*
Length = 316
Score = 113 bits (284), Expect = 2e-27
Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 4/100 (4%)
Query: 1004 ETSRPIR-LENFAEHYRIMSADSDFRFSEEFEELKH--VGREQSCTAADLPCNRPKNRFT 1060
+ + + + + F EEFE L+ S N+ KNR+
Sbjct: 8 SSGVDLGTENLYFQSMAETTDKVKQGFWEEFETLQQQECKLLYSRKEGQRQENKNKNRYK 67
Query: 1061 NILPYDHSRFKLQPVD-DEEGSDYINANYVPGHNSPRRSG 1099
NILP+DH+R L D +E SDYINAN + + +
Sbjct: 68 NILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNN 107
Score = 88.5 bits (220), Expect = 5e-19
Identities = 19/65 (29%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 1097 RSGTLIALDRILQSINHSDV---VDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEG 1153
R+GT I +D ++ I V +D+ + +R +R MVQTE QY I+ + +E
Sbjct: 252 RTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYRFIYMAVQHYIET 311
Query: 1154 NENQL 1158
+ ++
Sbjct: 312 LQRRI 316
>3m4u_A Tyrosine specific protein phosphatase, putative; protein tyrosine
phosphatase, hydrolase; 2.39A {Trypanosoma brucei}
Length = 306
Score = 111 bits (280), Expect = 7e-27
Identities = 20/98 (20%), Positives = 38/98 (38%), Gaps = 10/98 (10%)
Query: 1003 VETSRPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFTNI 1062
+ T++ + + R EF +L+ ++ NR KNR+ +I
Sbjct: 1 MSTAKSFPMAQLSTRA------QYSRMQREFVQLQRQENPRNINFTTSLKNRHKNRYLDI 54
Query: 1063 LPYDHSRFK--LQPVDDEEGS-DYINANYVPGHNSPRR 1097
L + + + L+ V + G YIN N + + P
Sbjct: 55 LANEETIYPPVLKAVGAQPGRYPYINGNLI-DLDLPHT 91
Score = 92.8 bits (231), Expect = 1e-20
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 1097 RSGTLIALDRILQSINHSDVVD--IFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGN 1154
R+GTLI L I + D ++ IV M+++R MVQ +QY I+ +L L +
Sbjct: 235 RTGTLIGAYAALLHIERGILTDSTVYSIVAAMKQKRFGMVQRLEQYAVIYMTVLGRLGVD 294
Query: 1155 ENQLP 1159
+ L
Sbjct: 295 ISGLV 299
>2cjz_A Human protein tyrosine phosphatase PTPN5; protein phosphatase, STEP,
hydrolase; HET: PTR; 1.70A {Homo sapiens} PDB: 2bij_A
2bv5_A*
Length = 305
Score = 110 bits (276), Expect = 2e-26
Identities = 27/106 (25%), Positives = 40/106 (37%), Gaps = 7/106 (6%)
Query: 998 LQDSIVETSRPIRLENFAEHY----RIMSADSDFRFSEEFEELKHVGREQSCTAADLPCN 1053
+ + + ++ + A F EF E+ D+P
Sbjct: 7 HSSGVDLGTENLYFQSMSRVLQAEELHEKALDPFLLQAEFFEIPMNF--VDPKEYDIPGL 64
Query: 1054 RPKNRFTNILPYDHSRFKLQPVD-DEEGSDYINANYVPGHNSPRRS 1098
KNR+ ILP HSR L D D+ S YINANY+ G+ +
Sbjct: 65 VRKNRYKTILPNPHSRVCLTSPDPDDPLSSYINANYIRGYGGEEKV 110
Score = 92.8 bits (231), Expect = 1e-20
Identities = 17/56 (30%), Positives = 27/56 (48%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLE 1152
R+G IA Q + VVDI +R++R M+QT +QY +H + +
Sbjct: 244 RTGCFIATSICCQQLRQEGVVDILKTTCQLRQDRGGMIQTCEQYQFVHHVMSLYEK 299
>2i75_A Tyrosine-protein phosphatase non-receptor type 4; PTPN4, PTP,
tyrosine phosphatase, MEG-1, structural genomics
structural genomics consortium, SGC; 2.45A {Homo sapiens}
Length = 320
Score = 110 bits (276), Expect = 3e-26
Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 10/97 (10%)
Query: 1006 SRPIRLENFAEHY-RIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFTNILP 1064
S + E ++ +F++L + + A LP N KNR+ +I P
Sbjct: 23 SVHQDDHSLRESMIQLAEGLITGTVLTQFDQLYRKKPGMTMSCAKLPQNISKNRYRDISP 82
Query: 1065 YDHSRFKLQPVDDEEGSDYINANYV----PGHNSPRR 1097
YD +R L+ DYINANY+ P + +
Sbjct: 83 YDATRVILKG-----NEDYINANYINMEIPSSSIINQ 114
Score = 92.4 bits (230), Expect = 3e-20
Identities = 19/56 (33%), Positives = 29/56 (51%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLE 1152
R+G LI ++ + I + V IV MR +R M+QT QY + + +L V E
Sbjct: 250 RTGVLITMETAMCLIECNQPVYPLDIVRTMRDQRAMMIQTPSQYRFVCEAILKVYE 305
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 112 bits (282), Expect = 9e-26
Identities = 83/543 (15%), Positives = 159/543 (29%), Gaps = 76/543 (13%)
Query: 139 NGSKISYVEIETLNGDSNQMFV-----DKTEYVLESLLPGRKYSINVQAVSNGMESPSFP 193
N I + +N ++ + + L G+ P P
Sbjct: 47 NHFTIPKEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKP 106
Query: 194 IIEDLRPIEFG---LNISWKSDVNSRQD-NFEVIYNR-NDTITEDPITVVTTDSKLLLEN 248
++L I + W + + NF + + T S + +
Sbjct: 107 --KNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYS 164
Query: 249 LYPGAGYSIQVFAI-SHG-LRSEPH--DYFQAVYPKPPTNLTLEKTSSNA--VLVKWKEP 302
+ V A + G + S+ D V P PP NL++ + + + + W P
Sbjct: 165 TVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNP 224
Query: 303 V--GSIFTEYSIRYRTEEDKTWVRLPNV---GTSLEAEVTDMVPGEKCMIQV---NSVSY 354
I +Y+I+YRT++ TW ++P T V D+ P + + ++
Sbjct: 225 SIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGK 284
Query: 355 SVESAHPLQINHT---------ISPNPATYVAALVDASNVTL--EFPRPE---GRIEYYL 400
S + + S + V L + P G+I Y
Sbjct: 285 GYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYE 344
Query: 401 VTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGVT 460
VT + + +T N T + +Y T+ N G +
Sbjct: 345 VTLT---RWKSHLQNYTVNATK------------LTVNLTNDRYLATLT--VRN-LVGKS 386
Query: 461 SLSARTMPLIESE----VLVVNNQQSTDSVTLRYTPQNS---NHFDFYR-FTLSEPDIPV 512
+ T+P + + V+ + + + + +T + + + P I
Sbjct: 387 DAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITD 446
Query: 513 IEKAANDTDRKVTFNNLTPGKLYNFTVW---TVADGVLSTPIQRHDRLYPEPITRINATE 569
++ R NL K Y TV G + + P + +
Sbjct: 447 WQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKK 506
Query: 570 ITDTSVSLTWDS-PRGEYNAF----EVQY--LNTEGFLIQNLTLHTSIVIGDLKPHRNYT 622
+ L WD P N F + Y + + + HT + L Y
Sbjct: 507 VGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYM 566
Query: 623 FTV 625
+
Sbjct: 567 VRM 569
Score = 111 bits (278), Expect = 3e-25
Identities = 82/565 (14%), Positives = 157/565 (27%), Gaps = 74/565 (13%)
Query: 184 SNGMESPSFPIIEDLRPIEFGLNISWKSDVNSRQDNFEVIYNRND-TITEDPITVV-TTD 241
G SP P+++ + K + +++ N TI ++ T++ T
Sbjct: 4 PCGYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTA 63
Query: 242 SKLLLENL-YPGAGYSIQVFAISH-GLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKW 299
S + ++ + + + P+ P NL+ + +W
Sbjct: 64 SSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEW 123
Query: 300 KEPV-GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVT-DMVPGEKCMIQV---NSVSY 354
+ T ++++ K T V V + V N++
Sbjct: 124 DGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGK 183
Query: 355 SVESAHPLQINHTISPNPATYVAAL---VDASNVTLEFPRPE---GRIEYYLVTWRGIGP 408
+ + PNP ++ + +S + L + P I Y + +R
Sbjct: 184 VTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDA 243
Query: 409 EATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGVTSLS----A 464
T + + + L P +Y F IR + + + + S
Sbjct: 244 S-------TWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASG 296
Query: 465 RTM---PLIESEVLVVNNQ---QSTDSVTLRYTP-----QNSNHFDFYRFTLSEPDIPVI 513
T P + Q +V L + N D Y TL+ +
Sbjct: 297 ITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILD-YEVTLTRWKSHLQ 355
Query: 514 EKAANDTDRKVTFNNLTPGKLYNFTVWT---VADGVLSTPIQRHDRLYPEPITRINATEI 570
N T Y T+ V +
Sbjct: 356 NYTVNAT----KLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFP 411
Query: 571 TDTSVSLTWDSPRGEYNAFEVQYL-------NTEGFLIQNLTLHTSIVIGDLKPHRNYTF 623
D + + W +PR + +++ + ++ T+H + + G+L + Y
Sbjct: 412 KDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLI 471
Query: 624 TVIVRSGTESSVLRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFFQAEKFHPIDVQPG 683
TV P S ++ P + V
Sbjct: 472 TVTPVYA-----DGPGSPESIKAYLKQAPPS----------------KGPTVRTKKVGKN 510
Query: 684 DITFEWS-LPGSEQNGVIRKFTISY 707
+ EW LP QNG IR +TI Y
Sbjct: 511 EAVLEWDQLPVDVQNGFIRNYTIFY 535
Score = 98.9 bits (246), Expect = 2e-21
Identities = 58/451 (12%), Positives = 119/451 (26%), Gaps = 58/451 (12%)
Query: 138 DNGSKISYVEIETLNGDSNQMFVDKTE-----YVLESLLPGRKYSINVQAVSNGMESPSF 192
+ + ++ K + V S + + V+A + + S
Sbjct: 128 ETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSD 187
Query: 193 PIIEDLRPIEF-----------------GLNISWK--SDVNSRQDNFEVIYNRNDTITED 233
I D L ++W S + + + Y D T
Sbjct: 188 HINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWS 247
Query: 234 PITVVTTDSK---LLLENLYPGAGYSIQVFAISHGLRSEPHDYFQAVYPKPP-------- 282
I T S +++L P Y ++ + + D+ +
Sbjct: 248 QIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAP 307
Query: 283 ----TNLTLEKTSSNAVLVKWK-----EPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLE 333
V + WK E G I +Y + T L
Sbjct: 308 SFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKIL-DYEVTLT-RWKSHLQNYTVNATKLT 365
Query: 334 AEVTDMVPGEKCMIQVNSVSYSVESAHPLQINHTISPNPATYVAALVDASNVTLEFPRPE 393
+T+ + N V S + + + +P + A + + +E+ P
Sbjct: 366 VNLTN-DRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPR 424
Query: 394 GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSY 453
++ Y++ W + +A + + H L L Y T+ V
Sbjct: 425 ESVKKYILEWCVLSDKAPCITDWQQEDGT------VHRTYLRGNLAESKCYLITVTPVYA 478
Query: 454 NLESGVTSLSARTMPLIESEVLVVN-NQQSTDSVTLRYTP----QNSNHFDFYRFTLSEP 508
+ S+ A S+ V + + L + + Y
Sbjct: 479 DGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTI 538
Query: 509 DIPVIEKAANDTDRKVTFNNLTPGKLYNFTV 539
+ + + T ++LT LY +
Sbjct: 539 IGNETAVNVDSSHTEYTLSSLTSDTLYMVRM 569
Score = 76.6 bits (188), Expect = 2e-14
Identities = 49/414 (11%), Positives = 107/414 (25%), Gaps = 86/414 (20%)
Query: 80 PLPVLDLTAV-MDDKTGDLFISWKP--DNASYQDMYKISIKSILLEEEHQKQFLMGFLGD 136
P P +L+ + ++ + L ++W + Y I ++
Sbjct: 199 PNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTK----------------- 241
Query: 137 CDNGSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAV-SNGMESPSFP-- 193
+ S S + E + + ++ L P +Y ++ + +G S
Sbjct: 242 --DASTWSQIPPEDTASTRSS-------FTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSE 292
Query: 194 --------------------IIEDLRPIEFGLNISWK----SDVNSRQDNFEVIYNRNDT 229
I + + WK + N + ++EV R +
Sbjct: 293 EASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKS 352
Query: 230 ITEDPITVVTTDSKLLLENLYPGAGYSIQVFAISH---GLRSEPHDYFQAVYPKPPTNLT 286
++ T + L Y + + + P
Sbjct: 353 HLQNYTVNATKLTVNL-----TNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDL 407
Query: 287 LEKTSSNAVLVKWKEP---VGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGE 343
N + V+W P V E+ + T + + ++ +
Sbjct: 408 KAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESK 467
Query: 344 KCMIQV---NSVSYSVESAHPLQINHTISPNPATYVAALVDASNVTLEFPRP-----EGR 395
+I V + + + T V + LE+ + G
Sbjct: 468 CYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGF 527
Query: 396 IEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIR 449
I Y + +R I T+ + + H + LT Y +
Sbjct: 528 IRNYTIFYRTIIGNETAVNVDSS-----------HTEYTLSSLTSDTLYMVRMA 570
Score = 63.9 bits (155), Expect = 2e-10
Identities = 59/449 (13%), Positives = 114/449 (25%), Gaps = 94/449 (20%)
Query: 482 STDSVTLRYTPQNSNHFDFY---RFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFT 538
+ + H + + + + + +
Sbjct: 115 EGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVW 174
Query: 539 VWTV-ADGVLS---TPIQRHDRLYPEP--ITRINATEITDTSVSLTWDSPR---GEYNAF 589
V A G ++ ++ P P + +E + + LTW +P +
Sbjct: 175 VEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKY 234
Query: 590 EVQYLNTEGFLIQNLTLH------TSIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVS 643
+QY + + +S + DLKP Y F + R E S
Sbjct: 235 NIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRI--RCMKEDGKGYWSDWSE 292
Query: 644 AI-FQTHESLPGKMDRTIVDTWHFVRFFQAEKFHPIDVQPGDITFEWS-LPGSEQNGVIR 701
T+E P K W+ + + + + + W LP E NG I
Sbjct: 293 EASGITYEDRPSKAP----SFWYKIDPSHTQGYRTVQLV-------WKTLPPFEANGKIL 341
Query: 702 KFTISYAQEAACNHNQRLHA------------KFQLPRVNSK------------------ 731
+ ++ + + N ++A L N
Sbjct: 342 DYEVTLTRWKSHLQNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQAT 401
Query: 732 ------KLKGWPGTLRTDW-------RSYI--YKLQAELGLHMEPETIWKQKMPIPRRC- 775
K L +W + YI + L T W+Q+ R
Sbjct: 402 HPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWC---VLSDKAPCITDWQQEDGTVHRTY 458
Query: 776 ---GLNPNSD-IIKVNENNIKRINS-----FNIYFLAPPRPSSQVVPTEVCRTSTTIQIR 826
L + +I V S + P + + +
Sbjct: 459 LRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKV---GKNEAVLE 515
Query: 827 FRKNYFSEKNGAIIYYTVIVAEDDSKNSS 855
+ + +NG I YT+ ++
Sbjct: 516 WDQLPVDVQNGFIRNYTIFYRTIIGNETA 544
Score = 52.7 bits (126), Expect = 6e-07
Identities = 51/356 (14%), Positives = 93/356 (26%), Gaps = 77/356 (21%)
Query: 518 NDTDRKVTFNNLTPGK-LYNFTVWT---VADGVLSTPIQRHDRLYPEPITRINATEITDT 573
N T VTF ++ + T + V I PE ++
Sbjct: 60 NRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLP--PEKPKNLSCIVNEGK 117
Query: 574 SVSLTWDSPR--GEYNAFEVQY----LNTEGFLIQNLTLHTSIVIGDLKPHRNYTFTVIV 627
+ WD R F ++ + T + V N V
Sbjct: 118 KMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEA 177
Query: 628 RS--GTESSVLRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFFQAEKFH--PIDVQPG 683
+ G +S D D + V+ +
Sbjct: 178 ENALGKVTS----------------------DHINFDPVYKVKPNPPHNLSVINSEELSS 215
Query: 684 DITFEWSLPGSEQNGVIRKFTISYAQEAACNHNQ--RLHAKFQLPRVNSKKLKGWPGTLR 741
+ W+ S ++ +I K+ I Y + A +Q + LK P T
Sbjct: 216 ILKLTWT-NPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLK--PFT-- 270
Query: 742 TDWRSYIYKLQAELGLHMEPETIWKQKMPIPRRCGLNPNSDIIKVNENNIKRINSFNIYF 801
Y+++++ + W S+ S Y
Sbjct: 271 ----EYVFRIRCMKEDGKGYWSDW---------------SEEA-----------SGITYE 300
Query: 802 LAPPRPSSQV--VPTEVCRTSTTIQIRFRKNYFSEKNGAIIYYTVIVAEDDSKNSS 855
P + S + + T+Q+ ++ E NG I+ Y V + S +
Sbjct: 301 DRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQN 356
Score = 47.7 bits (113), Expect = 2e-05
Identities = 30/205 (14%), Positives = 56/205 (27%), Gaps = 47/205 (22%)
Query: 75 LSGPEPLPVLDLTAVMDDKTGDLFISWKPDNASYQDMYKISIKSILLEEEHQKQFLMGFL 134
PV+DL A D L++ W S + Y +
Sbjct: 396 CDFQATHPVMDLKAFPKDNM--LWVEWTTPRESVKK-YIL-------------------- 432
Query: 135 GDCDNGSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESPSFPI 194
+ + + + Y+ +L + Y I V V I
Sbjct: 433 -----EWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESI 487
Query: 195 I-----------EDLRPIEFG---LNISWK----SDVNSRQDNFEVIYNRNDTITEDPIT 236
+R + G + W N N+ + Y R E +
Sbjct: 488 KAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFY-RTIIGNETAVN 546
Query: 237 VVTTDSKLLLENLYPGAGYSIQVFA 261
V ++ ++ L +L Y +++ A
Sbjct: 547 VDSSHTEYTLSSLTSDTLYMVRMAA 571
Score = 31.9 bits (72), Expect = 1.3
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 145 YVEIETLNGDSNQMFVD--KTEYVLESLLPGRKYSINVQAVSNGMESPS 191
+ T+ G+ + VD TEY L SL Y + + A ++
Sbjct: 532 TIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDG 580
>1fpr_A Protein-tyrosine phosphatase 1C; protein tyrosine phosphatase,
substrate specificity, residue shift, signaling protein;
HET: PTR; 2.50A {Homo sapiens} SCOP: c.45.1.2 PDB: 1gwz_A
Length = 284
Score = 105 bits (264), Expect = 5e-25
Identities = 32/70 (45%), Positives = 38/70 (54%), Gaps = 3/70 (4%)
Query: 1029 FSEEFEELK--HVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVD-DEEGSDYIN 1085
F EEFE L+ V P N+ KNR+ NILP+DHSR LQ D + GSDYIN
Sbjct: 2 FWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGRDSNIPGSDYIN 61
Query: 1086 ANYVPGHNSP 1095
ANY+
Sbjct: 62 ANYIKNQLLG 71
Score = 89.7 bits (223), Expect = 1e-19
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 1097 RSGTLIALDRILQSINHSDV---VDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEG 1153
R+GT+I +D ++++I+ + +DI + +R +R MVQTE QY I+ + +E
Sbjct: 217 RTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET 276
Query: 1154 NENQLPL 1160
+ +L +
Sbjct: 277 TKKKLEV 283
>2shp_A SHP-2, SYP, SHPTP-2; tyrosine phosphatase, insulin signaling, SH2
protein; HET: CAT; 2.00A {Homo sapiens} SCOP: c.45.1.2
d.93.1.1 d.93.1.1
Length = 525
Score = 109 bits (274), Expect = 7e-25
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 9/103 (8%)
Query: 1006 SRPIRLENFAEHYRIMSADSDF------RFSEEFEELKH--VGREQSCTAADLPCNRPKN 1057
+ I R +S ++ F EEFE L+ S N+ KN
Sbjct: 218 TTRINAAEIESRVRELSKLAETTDKVKQGFWEEFETLQQQECKLLYSRKEGQRQENKNKN 277
Query: 1058 RFTNILPYDHSRFKLQPVD-DEEGSDYINANYVPGHNSPRRSG 1099
R+ NILP+DH+R L D +E SDYINAN + + +
Sbjct: 278 RYKNILPFDHTRVVLHDGDPNEPVSDYINANIIMPEFETKCNN 320
Score = 86.1 bits (213), Expect = 2e-17
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 1097 RSGTLIALDRILQSINHSDV---VDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLE 1152
R+GT I +D ++ I V +D+ + +R +R MVQTE QY I+ + +E
Sbjct: 465 RTGTFIVIDILIDIIREKGVDCDIDVPKTIQMVRSQRSGMVQTEAQYRSIYMAVQHYIE 523
>1p15_A Protein-tyrosine phosphatase alpha; transmembrane, hydrolase,
phosphorylation; 2.00A {Mus musculus} SCOP: c.45.1.2
Length = 253
Score = 101 bits (255), Expect = 4e-24
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 1047 AADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRR 1097
+LP N KNR I+PY+ +R + EE +DY+NA+++ G+
Sbjct: 3 TGNLPANMKKNRVLQIIPYEFNRVIIPVKRGEENTDYVNASFIDGYRQKDS 53
Score = 92.6 bits (231), Expect = 7e-21
Identities = 17/60 (28%), Positives = 33/60 (55%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
R+GT AL +L+ + ++D+F V +R +R MVQT +QY ++ + ++ +
Sbjct: 189 RTGTFCALSTVLERVKAEGILDVFQTVKSLRLQRPHMVQTLEQYEFCYKVVQEYIDAFSD 248
>2b3o_A Tyrosine-protein phosphatase, non-receptor type 6; protein tyrosine
phosphatase, SHP-1, signaling, hydrolase; 2.80A {Homo
sapiens} PDB: 1x6c_A 2rmx_A* 2yu7_A*
Length = 532
Score = 106 bits (267), Expect = 5e-24
Identities = 34/141 (24%), Positives = 52/141 (36%), Gaps = 5/141 (3%)
Query: 958 VGITIPFILVLILCMTVFILRSRRKNVRKTTESRNADNMSLQDSIVETSRPIRLENFAEH 1017
+T + ++ + + + + + V +
Sbjct: 175 RYTVGGLET--FDSLTDLVEHFKKTGIEEASGAFVYLRQPYYATRVNAADIENRVLELNK 232
Query: 1018 YRIMSADSDFRFSEEFEELK--HVGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPV 1075
+ + F EEFE L+ V P N+ KNR+ NILP+DHSR LQ
Sbjct: 233 KQESEDTAKAGFWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNILPFDHSRVILQGR 292
Query: 1076 D-DEEGSDYINANYVPGHNSP 1095
D + GSDYINANY+
Sbjct: 293 DSNIPGSDYINANYIKNQLLG 313
Score = 95.0 bits (236), Expect = 3e-20
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 1097 RSGTLIALDRILQSINHSDV---VDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEG 1153
R+GT+I +D ++++I+ + +DI + +R +R MVQTE QY I+ + +E
Sbjct: 459 RTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET 518
Query: 1154 NENQLPLREIHHNQ 1167
+ +L + + Q
Sbjct: 519 TKKKLEVLQSQKGQ 532
Score = 39.9 bits (93), Expect = 0.005
Identities = 10/61 (16%), Positives = 17/61 (27%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNEN 1156
G L D + + H I R T I +L + + E+
Sbjct: 177 TVGGLETFDSLTDLVEHFKKTGIEEASGAFVYLRQPYYATRVNAADIENRVLELNKKQES 236
Query: 1157 Q 1157
+
Sbjct: 237 E 237
>3ps5_A Tyrosine-protein phosphatase non-receptor type 6; SH2, PTP,
hydrolase, signaling protein; 3.10A {Homo sapiens}
Length = 595
Score = 103 bits (258), Expect = 9e-23
Identities = 39/164 (23%), Positives = 59/164 (35%), Gaps = 13/164 (7%)
Query: 951 QDNTPLVV------GITIPFILVLILCMTVFILRSRRKNVRKTTESRNADNMSLQDSIVE 1004
T + V +T + ++ + + + + + V
Sbjct: 162 LRVTHIKVMCEGGRYTVGGLET--FDSLTDLVEHFKKTGIEEASGAFVYLRQPYYATRVN 219
Query: 1005 TSRPIRLENFAEHYRIMSADSDFRFSEEFEELK--HVGREQSCTAADLPCNRPKNRFTNI 1062
+ + + F EEFE L+ V P N+ KNR+ NI
Sbjct: 220 AADIENRVLELNKKQESEDTAKAGFWEEFESLQKQEVKNLHQRLEGQRPENKGKNRYKNI 279
Query: 1063 LPYDHSRFKLQPVD-DEEGSDYINANYVPGHNSP--RRSGTLIA 1103
LP+DHSR LQ D + GSDYINANY+ + T IA
Sbjct: 280 LPFDHSRVILQGRDSNIPGSDYINANYIKNQLLGPDENAKTYIA 323
Score = 92.7 bits (230), Expect = 2e-19
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 3/77 (3%)
Query: 1097 RSGTLIALDRILQSINHSDV---VDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEG 1153
R+GT+I +D ++++I+ + +DI + +R +R MVQTE QY I+ + +E
Sbjct: 459 RTGTIIVIDMLMENISTKGLDCDIDIQKTIQMVRAQRSGMVQTEAQYKFIYVAIAQFIET 518
Query: 1154 NENQLPLREIHHNQGYE 1170
+ +L + + Q E
Sbjct: 519 TKKKLEVLQSQKGQESE 535
Score = 39.1 bits (91), Expect = 0.008
Identities = 8/50 (16%), Positives = 10/50 (20%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQC 1146
G L D + + H I R T I
Sbjct: 177 TVGGLETFDSLTDLVEHFKKTGIEEASGAFVYLRQPYYATRVNAADIENR 226
Score = 33.8 bits (77), Expect = 0.39
Identities = 6/52 (11%), Positives = 16/52 (30%), Gaps = 1/52 (1%)
Query: 1019 RIMSADSDFRFSEEFEELKHVGREQS-CTAADLPCNRPKNRFTNILPYDHSR 1069
++ S E+ + + ++ A ++ K L + R
Sbjct: 522 KLEVLQSQKGQESEYGNITYPPAMKNAHAKASRTSSKHKEDVYENLHTKNKR 573
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 94.5 bits (234), Expect = 8e-20
Identities = 79/575 (13%), Positives = 156/575 (27%), Gaps = 102/575 (17%)
Query: 401 VTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGVT 460
+ + +++ KY+ IRT S
Sbjct: 196 DRLW-LQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYA 254
Query: 461 SLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQNSN----HFDFYRFTLSEPDIPVIEKA 516
L + P+ + + + + + L N + + T S
Sbjct: 255 ELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQ--- 311
Query: 517 ANDTDRKVTFNNLTPGKLYNFTVWTVADGVL-------STPIQRHDRLYPEPITRINATE 569
+L P Y +V G + + ++ E
Sbjct: 312 -PVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVE 370
Query: 570 ITDTSVSLTWDSP-----RGEYNAFEVQYL--------NTEGFLIQNLTLHTSIVIGDLK 616
+ +++ W+ R V Y E H I +L
Sbjct: 371 VKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLS 430
Query: 617 PHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFFQAEKFH 676
P+ N + +I+ + S + I QT E LPG + +
Sbjct: 431 PYTNVSVKLILMNPEGRK---ESQEL--IVQTDEDLPGAVPTESIQG------------- 472
Query: 677 PIDVQPGDITFEWSLPGSEQNGVIRKFTISY----AQEAACNHNQRLHAKFQLPRVNSKK 732
I +W P ++ GVI + I+Y + + + + + +L
Sbjct: 473 --STFEEKIFLQWREP-TQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFL 529
Query: 733 LKG-WPGTLRTDWRSYIYKLQAELGLHMEPETIWKQKMPIPRRCGLNPNSDIIKVNENNI 791
G +PGT Y + ++A P + I
Sbjct: 530 FFGLYPGTT------YSFTIRASTAKGFGPPATNQFTTKI-------------------- 563
Query: 792 KRINSFNIYFLAPPRPSSQVVPTEVCRTSTTIQIRFRKNYFSEKNGAIIYYTVIVAEDDS 851
+ P + + T + +T T+ + + + + Y ++V E+
Sbjct: 564 -----------SAPSMPAYELETPLNQTDNTVTVMLKPA--HSRGAPVSVYQIVVEEERP 610
Query: 852 KNSSGL-----EMPSWRDVQAYSVW-PPYQVLEPFQFFKNMSVEDFTIGEESCEGKTGYC 905
+ + P Q S+ Y F + + FTIG+ GY
Sbjct: 611 RRTKKTTEILKCYPVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYN--GYW 668
Query: 906 NGPLKSGSTYKVKIRAFTTPDKFTDTAYSFPISTG 940
N PL +Y++ +A + + T + G
Sbjct: 669 NTPLLPYKSYRIYFQAASRANGETKIDCVQVATKG 703
Score = 86.0 bits (212), Expect = 3e-17
Identities = 53/339 (15%), Positives = 101/339 (29%), Gaps = 52/339 (15%)
Query: 138 DNGSKISYVEIE--TLNGD-SNQMFVDKTEYVLESLLPGRKYSINVQAVSN-----GMES 189
+ I E+E T +G +++ VD T Y + L P +Y I+V G
Sbjct: 288 NGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPG 347
Query: 190 PSFPIIEDL-------RPIEFG------LNISWK----SDVNSRQDNFEVIYNRNDTITE 232
P+ R +E + I W+ + N V Y E
Sbjct: 348 PALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQE 407
Query: 233 DPITVV-----TTDSKLLLENLYPGAGYSIQVFAISHGLRSEPHDY----FQAVYPKPPT 283
V + + + NL P S+++ ++ R E + + + PT
Sbjct: 408 QVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPT 467
Query: 284 NLTLEKTSSNAVLVKWKEP--VGSIFTEYSIRYRTEEDKTW--------VRLPNVGTSLE 333
T + ++W+EP + T Y I Y+ R+ +G
Sbjct: 468 ESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETH 527
Query: 334 AEVTDMVPGEKCMIQV---NSVSYSVESAHPLQINHTISPNPATYVAALVDASN--VTLE 388
+ PG + + + + + + PA + ++ ++ VT+
Sbjct: 528 FLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVM 587
Query: 389 FPRPE---GRIEYYLVTWRGIGPEATSTELFTKNVTNDP 424
+ Y + P T P
Sbjct: 588 LKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCYPVP 626
Score = 78.3 bits (192), Expect = 8e-15
Identities = 66/515 (12%), Positives = 132/515 (25%), Gaps = 75/515 (14%)
Query: 236 TVVTTDSKLLLENLYPGAGYSIQVFAISHGLRSEPHDYFQAVYPKPPTNLTLEKTSSNAV 295
T +++ E + G + + + P + + ++
Sbjct: 129 TFWPNFYQVIFEVITSGHQGYLAIDEVKV--LGHPCTRTPHFLRIQNVEVNAGQFATFQC 186
Query: 296 LVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGE----KCMIQVNS 351
+ G I R K + V + + +CMI+
Sbjct: 187 SAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEG 246
Query: 352 VSYSVESAHPLQINHTISPNPATYVAALVDASNVTLEFPRPEGR--IEYYLVTWRGIGPE 409
A + + P + + L G I V +
Sbjct: 247 GVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYC----- 301
Query: 410 ATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLE-SGVTSLSARTM- 467
T + + + I L P +Y+ ++ +G + RT
Sbjct: 302 -------TASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRT 354
Query: 468 ----PLIESEVLVVNNQQSTDSVTLRYTP-----QNSNHFDF-----YRFTLSEPDIPVI 513
P+ L V +S +T+R+ P + ++ Y+ E +
Sbjct: 355 KCADPMRGPRKLEVVEVKSR-QITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEV 413
Query: 514 EKAANDTDRKVTFNNLTPGKLYNFTV--WTVADGVLSTPIQRHDR--LYPEPITRINATE 569
++ + T NL+P + + S + L T
Sbjct: 414 SWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPTESIQGS 473
Query: 570 ITDTSVSLTWDSP---RGEYNAFEVQYLNTEGFL-----------IQNLTLHTSIVIGDL 615
+ + L W P G +E+ Y F + L T + L
Sbjct: 474 TFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGL 533
Query: 616 KPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFFQAEKF 675
P Y+FT+ + P + F T S P +
Sbjct: 534 YPGTTYSFTIRASTAKGFGP-----PATNQFTTKISAPSMPAYELE-------------- 574
Query: 676 HPIDVQPGDITFEWSLPGSEQNGVIRKFTISYAQE 710
P++ +T P + + + I +E
Sbjct: 575 TPLNQTDNTVTVML-KPAHSRGAPVSVYQIVVEEE 608
Score = 63.6 bits (154), Expect = 3e-10
Identities = 33/215 (15%), Positives = 65/215 (30%), Gaps = 32/215 (14%)
Query: 155 SNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESPSFPII----EDL-----RPIEFG- 204
S ++ + +L P S+ + ++ S +I EDL G
Sbjct: 414 SWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPTESIQGS 473
Query: 205 -----LNISWK--SDVNSRQDNFEVIYNRNDT--------ITEDPITVVTTDSKLLLENL 249
+ + W+ + +E+ Y + ++ + ++ L L
Sbjct: 474 TFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGL 533
Query: 250 YPGAGYSIQVFAISH---GLRSEPH-DYFQAVYPKPPTNL-TLEKTSSNAVLVKWKEP-- 302
YPG YS + A + G + + P L T + N V V K
Sbjct: 534 YPGTTYSFTIRASTAKGFGPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAHS 593
Query: 303 VGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVT 337
G+ + Y I E + + + +
Sbjct: 594 RGAPVSVYQIVVEEERPRRTKKTTEILKCYPVPIH 628
Score = 62.1 bits (150), Expect = 8e-10
Identities = 71/527 (13%), Positives = 134/527 (25%), Gaps = 112/527 (21%)
Query: 419 NVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLES-------GVTSLSARTMPLIE 471
N++ DP + I P YQ ++ + V P
Sbjct: 111 NISGDPTRTWNRAELAISTFWPN-FYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFL 169
Query: 472 SEVLVVNNQQSTDSVTLRYTPQNSNHFDFYRFTLSEPDIPVIEKAANDTDRKV---TFNN 528
V N + + + + D P+ E + R + N
Sbjct: 170 RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVN 229
Query: 529 LTPGKLYNFTVW--TVADGVLSTPIQRHDRLYPEPITRINATEITDTSVSLTWDSPRGEY 586
T + T +S + + P PI + T + + ++
Sbjct: 230 TTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSING 289
Query: 587 NA----FEVQY-LNTEGFLIQNLTLHTSIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLP 641
+ EV+Y + + + TS IG L P Y +V++ E
Sbjct: 290 DGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPA 349
Query: 642 VSAIFQTHESLPGKMDRTIVDTWHFVRFFQAEKFHPIDVQPGDITFEWSLPGSE-QNGVI 700
+ +T + P + K ++V+ IT W G
Sbjct: 350 L--RTRTKCADPMR---------------GPRKLEVVEVKSRQITIRWEPFGYNVTRCHS 392
Query: 701 RKFTISYAQEAACNHNQRLHAKFQLPRVNSK-KLKGW-PGTLRTDWRSYIYKLQA--ELG 756
T+ Y + R + + + + P T + KL G
Sbjct: 393 YNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYT------NVSVKLILMNPEG 446
Query: 757 LHMEPETIWKQKMPIPRRCGLNPNSDIIKVNENNIKRINSFNIYFLAPPRPSSQVVPTEV 816
E + + I++ +E+ P ++ +
Sbjct: 447 -RKESQEL------------------IVQTDED-------------LPGAVPTESIQGST 474
Query: 817 CRTSTTIQIRFRKNYFSEKNGAIIYYTVIVAEDDSKNSSGLEMPSWRDVQAYSVWPPYQV 876
I +++R+ ++ G I Y + S + V
Sbjct: 475 --FEEKIFLQWREP--TQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLG------- 523
Query: 877 LEPFQFFKNMSVEDFTIGEESCEGKTGYCNGPLKSGSTYKVKIRAFT 923
+ F L G+TY IRA T
Sbjct: 524 ----------NETHFLFFG-------------LYPGTTYSFTIRAST 547
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 86.4 bits (214), Expect = 3e-19
Identities = 44/175 (25%), Positives = 74/175 (42%), Gaps = 12/175 (6%)
Query: 481 QSTDSVTLRYTPQNSNHFDFYRFTLSEPD--IPVIEKAANDTDRKVTFNNLTPGKLYNFT 538
+ S+ LR+TP NS+ YR T+ IP+ E + + T L PG Y+ +
Sbjct: 34 ITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDIS 93
Query: 539 VWTVADGVLSTPIQRHDRLYPEPITRINATEITDTSVSLTWDSPR-GEYNAFEVQYLNTE 597
V+TV +G STP + P T + T I ++ +TW P + F V+Y +
Sbjct: 94 VYTVKNGGESTPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVK 153
Query: 598 GF-LIQNLTLH---TSIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQT 648
+ L++ ++V+ +L P Y +V S P+ +T
Sbjct: 154 NEEDVAELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHEST-----PLRGRQKT 203
Score = 86.4 bits (214), Expect = 3e-19
Identities = 33/156 (21%), Positives = 64/156 (41%), Gaps = 2/156 (1%)
Query: 205 LNISWKSDVNSRQDNFEVIYN-RNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAIS 263
+ + W +S + + + I V ++ + L PG Y I V+ +
Sbjct: 39 IGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVK 98
Query: 264 HGLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWV 323
+G S P Q PPT+L + + V W P T + +RY +++ V
Sbjct: 99 NGGESTPTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDV 158
Query: 324 RLPNV-GTSLEAEVTDMVPGEKCMIQVNSVSYSVES 358
++ + +T+++PG + ++ V+SV ES
Sbjct: 159 AELSISPSDNAVVLTNLLPGTEYVVSVSSVYEQHES 194
Score = 81.8 bits (202), Expect = 1e-17
Identities = 36/189 (19%), Positives = 68/189 (35%), Gaps = 13/189 (6%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNV-GTSLEAEVTDM 339
PT+L+ + +++ ++W S Y I + + V + VT +
Sbjct: 25 QPTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDFVDSSVGYYTVTGL 84
Query: 340 VPGEKCMIQVNSVSYSVESAHPLQINHTISPNPATYVAAL-VDASNVTLEF-PRPEGRIE 397
PG I V +V ES P + + P T + + + + + P P +
Sbjct: 85 EPGIDYDISVYTVKNGGEST-PTTLTQQTAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLT 143
Query: 398 YYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLES 457
+LV + + E EL N +++ L PG +Y ++ +V ES
Sbjct: 144 NFLVRYSPVKNEEDVAELSISPSDN---------AVVLTNLLPGTEYVVSVSSVYEQHES 194
Query: 458 GVTSLSART 466
+T
Sbjct: 195 TPLRGRQKT 203
Score = 77.2 bits (190), Expect = 5e-16
Identities = 41/207 (19%), Positives = 80/207 (38%), Gaps = 15/207 (7%)
Query: 350 NSVSYSVESAHPLQIN-HTISPNPATYVAALVDASNVTLEFPRPE-GRIEYYLVTWRGIG 407
+S + S+ + H P P + S++ L + I Y +T
Sbjct: 3 SSHHHHHHSSGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVV--- 59
Query: 408 PEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGVTSLSARTM 467
+F V + + + L PG+ Y ++ TV ES T+L+ +T
Sbjct: 60 AAGEGIPIFEDFVDSS------VGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTA 113
Query: 468 PLIESEVLVVNNQQSTDSVTLRYTPQNSNHFDFYR--FTLSEPDIPVIEKAANDTDRKVT 525
+++ N D++ + + P S + ++ + + V E + + +D V
Sbjct: 114 VPPPTDLRFTN--IGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVV 171
Query: 526 FNNLTPGKLYNFTVWTVADGVLSTPIQ 552
NL PG Y +V +V + STP++
Sbjct: 172 LTNLLPGTEYVVSVSSVYEQHESTPLR 198
Score = 62.5 bits (152), Expect = 5e-11
Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 13/142 (9%)
Query: 142 KISYVEIETLNGDSNQMF-VDKTEYVLESLLPGRKYSINVQAVSNGMESPSFPIIE---- 196
+I+ V Y + L PG Y I+V V NG ES + +
Sbjct: 55 RITVVAAGEGIPIFEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAV 114
Query: 197 ----DLRPIEFG---LNISWKSDVNSRQDNFEVIYNRNDTITE-DPITVVTTDSKLLLEN 248
DLR G + ++W + NF V Y+ + +++ +D+ ++L N
Sbjct: 115 PPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNAVVLTN 174
Query: 249 LYPGAGYSIQVFAISHGLRSEP 270
L PG Y + V ++ S P
Sbjct: 175 LLPGTEYVVSVSSVYEQHESTP 196
Score = 57.5 bits (139), Expect = 3e-09
Identities = 26/165 (15%), Positives = 49/165 (29%), Gaps = 32/165 (19%)
Query: 548 STPIQRHDRLYPEPITRINATEITDTSVSLTWDSPR-GEYNAFEVQYLNT-EGFLIQNLT 605
S + R + T ++ +ITD+S+ L W + + + EG I
Sbjct: 12 SGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFEDF 71
Query: 606 L---HTSIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPGKMDRTIVD 662
+ + L+P +Y +V S P + QT P
Sbjct: 72 VDSSVGYYTVTGLEPGIDYDISVYTVKNG-----GESTPTTLTQQTAVPPP--------- 117
Query: 663 TWHFVRFFQAEKFHPIDVQPGDITFEWSLPGSEQNGVIRKFTISY 707
++ P + W+ P + + F + Y
Sbjct: 118 ----------TDLRFTNIGPDTMRVTWAPP---PSIDLTNFLVRY 149
Score = 39.0 bits (91), Expect = 0.004
Identities = 18/112 (16%), Positives = 33/112 (29%), Gaps = 29/112 (25%)
Query: 79 EPLPVLDLTAVMDDKTGDLFISWKPDNASYQDMYKISIKSILLEEEHQKQFLMGFLGDCD 138
P DL + ++W P + + + +
Sbjct: 113 AVPPPTDLRFTNIGPD-TMRVTWAPPPSIDLTNFLVRYSPV------------------K 153
Query: 139 NGSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESP 190
N ++ + I VL +LLPG +Y ++V +V ES
Sbjct: 154 NEEDVAELSISP----------SDNAVVLTNLLPGTEYVVSVSSVYEQHEST 195
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 92.3 bits (228), Expect = 4e-19
Identities = 68/510 (13%), Positives = 131/510 (25%), Gaps = 125/510 (24%)
Query: 268 SEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRT--------E 317
P ++ V KP L + S + VKW Y ++ R +
Sbjct: 150 QVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYGIHPSED 209
Query: 318 EDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQV---NSVSYSVESA--HPLQINHTISPNP 372
+ W + T ++TD+ P +V N +A + + S P
Sbjct: 210 DATHWQTVAQT-TDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPP 268
Query: 373 ATYVAALVDAS-------NVTLEFPRPE---GRIEYYLVTWRGIGPEATSTELFTKNVTN 422
A L +++ VT+ + PE + +Y V W + + K
Sbjct: 269 APANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKT 328
Query: 423 DPEDKDKHVHILIDQLTPGVKYQFTIRTVSY----------------------------- 453
++ + +++L P Y ++ ++Y
Sbjct: 329 TDGFQNSVI---LEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVK 385
Query: 454 --NLESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQNSNHFDFYR------FTL 505
R P EV Q V + + + Y
Sbjct: 386 TRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACA 445
Query: 506 SEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVW--------TVADGVLSTP------- 550
+ + + +L+ Y TV +TP
Sbjct: 446 HNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKG 505
Query: 551 --------------IQRHDRLYPEPITRINATEITDTSVSLTWDSPRGEYNA----FEVQ 592
+ PE ++ + + + +W + F+V
Sbjct: 506 KSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVT 565
Query: 593 YLNTEGFLIQNLTL-------------HTSIVIGDLKPHRNYTFTVIVRS----GTESSV 635
+ QN H + + +L+P Y V V + G +
Sbjct: 566 WAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIK 625
Query: 636 LRRSLPVSAIFQTHESLPGKMDRTIVDTWH 665
F+T E P R+ + H
Sbjct: 626 ---------TFRTPELPPSSAHRSHLKHRH 646
Score = 61.1 bits (147), Expect = 2e-09
Identities = 56/410 (13%), Positives = 108/410 (26%), Gaps = 103/410 (25%)
Query: 160 VDKTEYVLESLLPGRKYSINVQAV-SNGMESPSFPI-------------------IEDLR 199
L + P R Y V AV +G + P + +
Sbjct: 220 TTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANST 279
Query: 200 PIEFG---LNISWK--SDVNSRQDNFEVIYNRNDTITEDPI-------TVVTTDSKLLLE 247
G + I W + + +++V ++ + T + ++LE
Sbjct: 280 VNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILE 339
Query: 248 NLYPGAGYSIQVFAISHG----LRSEPHDYFQAVYPKPPTNLTLEKTSSNA--------- 294
L P Y +++ AI++ L+S L KT
Sbjct: 340 KLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQR 399
Query: 295 --------------------VLVKWKEPVGSIFTEYSIRYRTE---EDKTWVRLPNVGTS 331
V V WK+ Y +R+ E ++T + G +
Sbjct: 400 RRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMT 459
Query: 332 LE--AEVTDMVPGEKCMIQVNSV----------------SYSVESAHPLQINHTISPNPA 373
E + D+ K + V + S + +
Sbjct: 460 HENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGH 519
Query: 374 TYVAALVDASNVTLEFPR-----------------PEGRIEYYLVTWRGIGPEATSTELF 416
L N++ F + + VTW + E+ L
Sbjct: 520 VLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLP 579
Query: 417 TKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGVTSLSART 466
++ H + + L P Y+ ++ ++ E T + RT
Sbjct: 580 NSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATIKTFRT 629
Score = 59.2 bits (142), Expect = 6e-09
Identities = 70/511 (13%), Positives = 148/511 (28%), Gaps = 110/511 (21%)
Query: 468 PLIESEVLVVNNQQSTDSVTLRYTPQNSNHFDFYRFTL----------SEPDIPVIEKAA 517
PL + L QS + ++++ + + + + + SE D + A
Sbjct: 160 PLKPRKELRFTELQSG-QLEVKWSSKFNISIEPVIYVVQRRWNYGIHPSEDDATHWQTVA 218
Query: 518 NDTDRKVTFNNLTPGKLYNFTVWTVAD---GVLSTPIQRHDRLYPEP----------ITR 564
TD +V ++ P + Y F V V + P + R +P +
Sbjct: 219 QTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHF-RSSKDPSAPPAPANLRLAN 277
Query: 565 INATEITDTSVSLTWDSPR---GEYNAFEVQY--LNTEGFLIQNLTLH--------TSIV 611
+V++ WD P + ++V + + + L+ S++
Sbjct: 278 STVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVI 337
Query: 612 IGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPG--------KMDRTIVDT 663
+ L+P +Y + + + L+ S VS F + + K
Sbjct: 338 LEKLQPDCDYVVELQAITYWGQTRLK-SAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLP 396
Query: 664 WHFVRFFQAEKFHPIDVQPGDITFEWSLPGSEQNGVIRKFTISYAQEAACNHNQRLHAKF 723
+ R + + Q G + + +E V R + + A N A
Sbjct: 397 FQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEACAHNRTTGSEASS 456
Query: 724 QLPRVNSKKLKG-WPGTLRTDWRSYIYKLQA----------ELGLHMEPETIWKQKMPIP 772
+ N L+ Y +Q + P + K K P
Sbjct: 457 GMTHENYIILQDLSFSCK------YKVTVQPIRPKSHSKAEAVFFTTPPCSALKGKSHKP 510
Query: 773 RRCGLNPNSDIIKVNENNIKRINSFNIYFLAPPRPSSQVVPTEVCRTSTTIQIRFRKNYF 832
C + KV +P + V + T ++
Sbjct: 511 IGCLGEAGHVLSKV-----------------LAKPENLSASFIVQDVNITGHFSWKMAK- 552
Query: 833 SEKNGAIIYYTVIVAEDDSKNSSGLEMPSWRDVQAYSVWPPYQVLEPFQFFKNMSVEDFT 892
+ + + V AE ++ S ++ S+ Q+L + T
Sbjct: 553 ANLYQPMTGFQVTWAEVTTE--------SRQNSLPNSIISQSQILPSDHY-------VLT 597
Query: 893 IGEESCEGKTGYCNGPLKSGSTYKVKIRAFT 923
+ L+ + Y+++++ T
Sbjct: 598 VPN-------------LRPSTLYRLEVQVLT 615
Score = 46.1 bits (108), Expect = 7e-05
Identities = 26/148 (17%), Positives = 46/148 (31%), Gaps = 25/148 (16%)
Query: 47 QPLSIPITKSRDEPTQCDMSEGLETRQNLSGPEPLPVLDLTAVMDDKTGDLFISWK-PDN 105
P + +P C G + L+ PE L ++ D SWK
Sbjct: 497 TPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASF---IVQDVNITGHFSWKMAKA 553
Query: 106 ASYQDM--YKISIKSILLEEEHQKQFLMGFLGDCDNGSKISYVEIETLNGDSNQMFVDKT 163
YQ M ++++ + E ++ S + D
Sbjct: 554 NLYQPMTGFQVTWAEVTTESRQNS-------------------LPNSIISQSQILPSDHY 594
Query: 164 EYVLESLLPGRKYSINVQAVSNGMESPS 191
+ +L P Y + VQ ++ G E P+
Sbjct: 595 VLTVPNLRPSTLYRLEVQVLTPGGEGPA 622
>1lyv_A Protein-tyrosine phosphatase YOPH; toxin, hydrolase; 1.36A {Yersinia
enterocolitica} SCOP: c.45.1.2 PDB: 1qz0_A* 1ytn_A 1ytw_A
2i42_A 2y2f_A* 2ydu_A* 1xxp_A* 3blu_A* 1ypt_A* 3blt_A*
1xxv_A* 3f9b_A 3f9a_A 3f99_A 3bm8_A* 1pa9_A* 1yts_A
Length = 306
Score = 84.0 bits (208), Expect = 1e-17
Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 12/75 (16%)
Query: 1022 SADSDFRFSEEFEELKH--VGREQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEE 1079
++ S L++ NRF +I + +
Sbjct: 28 GPEARAELSSRLTTLRNTLAPATNDPRYLQACGGEKLNRFRDIQCRRQTAVRA------- 80
Query: 1080 GSDYINANYVPGHNS 1094
+NANY+ N+
Sbjct: 81 ---DLNANYIQVGNT 92
Score = 76.3 bits (188), Expect = 5e-15
Identities = 11/56 (19%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERV-WMVQTEQQYICIHQCLLAVL 1151
R+ LI + + + + + +V MR +R MVQ ++Q + +
Sbjct: 247 RTAQLIGAM--CMNDSRNSQLSVEDMVSQMRVQRNGIMVQKDEQLDVLIKLAEGQG 300
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 86.5 bits (213), Expect = 3e-17
Identities = 56/367 (15%), Positives = 108/367 (29%), Gaps = 60/367 (16%)
Query: 228 DTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAI--------SHGLRSEPHDYF---QA 276
D L+ L P Y+I V + ++G +S+ Y
Sbjct: 535 DPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDII-YVQTDAT 593
Query: 277 VYPKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEA 334
P P + SS+ +++KWK P T Y + + + + + + +
Sbjct: 594 N-PSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLK--- 649
Query: 335 EVTDMVPGEKCMIQV---NSVSYSVESAHPLQINHTISPNPATYVAALVDASNVTLEF-- 389
+P +S ++ P + + ++ S+ F
Sbjct: 650 --GLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFED 707
Query: 390 --------PRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPG 441
PRP + E N ++I L
Sbjct: 708 YLHNVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKE----------SLVISGLRHF 757
Query: 442 VKYQFTI---RTVSYNLESGVTS-LSARTMPLIESEVLVVN---NQQSTDSVTLRYT-PQ 493
Y+ + + V + +SARTMP +++ +V + V L + P+
Sbjct: 758 TGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPK 817
Query: 494 NSNHFD-----FYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTV--WTVA-DG 545
N YR E + +R L+PG Y+ + ++A +G
Sbjct: 818 EPNGLIVLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN-YSVRIRATSLAGNG 876
Query: 546 VLSTPIQ 552
+ P
Sbjct: 877 SWTEPTY 883
Score = 75.3 bits (184), Expect = 8e-14
Identities = 48/279 (17%), Positives = 90/279 (32%), Gaps = 26/279 (9%)
Query: 80 PLPVLDLTAVMDDKTGDLFISWKPDNASYQDMYKISIKSILLEEEHQKQFLMGFLGDCDN 139
P LD +V + + + + WKP + ++ + E+ + L L
Sbjct: 595 PSVPLDPISVSNSSS-QIILKWKPPSDPNGNITHYLVFWERQAEDSELFELDYCLKGLKL 653
Query: 140 GSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESPSFPIIEDLR 199
S+ E+ + + ++EY + + Q + ES ED
Sbjct: 654 PSRTWSPPFESEDSQKHN----QSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYL 709
Query: 200 PIEFGLNISWKSDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQV 259
N+ + + ++ + + N + P V L++ L GY I++
Sbjct: 710 H-----NVVFVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIEL 764
Query: 260 FA---ISHGLRSEPHDYF------QAVYPKPPTNLTLEKTSSNAVLVKWKEPV---GSIF 307
A + R Y +A +T E +N V + W+EP G I
Sbjct: 765 QACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLI- 823
Query: 308 TEYSIRYR---TEEDKTWVRLPNVGTSLEAEVTDMVPGE 343
Y + YR EE + + + PG
Sbjct: 824 VLYEVSYRRYGDEELHLCDTRKHFALERGCRLRGLSPGN 862
Score = 60.7 bits (146), Expect = 3e-09
Identities = 41/312 (13%), Positives = 83/312 (26%), Gaps = 61/312 (19%)
Query: 429 KHVHILIDQLTPGVKYQFTIRTVSYNLESGVTS------LSARTMPLIESEVLVVN-NQQ 481
H L+ L P +Y ++T+ + T + +T S L
Sbjct: 547 NHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSN 606
Query: 482 STDSVTLRYTPQNSNH--FDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTV 539
S+ + L++ P + + Y E + P + ++
Sbjct: 607 SSSQIILKWKPPSDPNGNITHYLVFWERQA----EDSELFELDYCLKGLKLPSRTWSPPF 662
Query: 540 W---TVADGVLSTPIQRHDRLYPEPITRINATEITDTSVSLTWDSP-------------R 583
+ + E+ ++S T++ R
Sbjct: 663 ESEDSQKHNQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKR 722
Query: 584 GEYNAFEVQYLNTEGFLIQNLTLHTSIVIGDLKPHRNYTFTVI--------VRSGTESSV 635
N E + + S+VI L+ Y + R + V
Sbjct: 723 RSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYV 782
Query: 636 LRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFFQAEKFHPIDVQPGDITFEWSLPGSE 695
R++P + + + G + I + + W P E
Sbjct: 783 SARTMPEAKA----DDIVGPVTHEIFE-------------------NNVVHLMWQEP-KE 818
Query: 696 QNGVIRKFTISY 707
NG+I + +SY
Sbjct: 819 PNGLIVLYEVSY 830
Score = 58.8 bits (141), Expect = 9e-09
Identities = 52/424 (12%), Positives = 117/424 (27%), Gaps = 53/424 (12%)
Query: 71 TRQNLSGPEPLPVLDLTAVMDDKTGDLFISWKPDNASYQDMYKISIKSILLEEEHQKQFL 130
+ N L + + + + W+P D + + +E +
Sbjct: 459 LKTNGDQASCENELLKFSYIRTSFDKILLRWEPYWPP--DFRDLLGFMLFYKEAPYQNVT 516
Query: 131 MGFLGDCDNGSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMES- 189
D + + V+I+ ++ + +++ L P +Y+I V+ + +
Sbjct: 517 EFDGQDACGSNSWTVVDIDPPLRSNDPKSQNHPGWLMRGLKPWTQYAIFVKTLVTFSDER 576
Query: 190 ------------------PSFPIIEDLRPIEFG-LNISWK--SDVNSRQDNFEVIYNRND 228
PS P+ + + WK SD N ++ V + R
Sbjct: 577 RTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKPPSDPNGNITHYLVFWERQA 636
Query: 229 TITEDPITVVTTDSKLLLENLYP-------GAGYSIQVFAIS-HGLRSEPHDYFQAVYPK 280
+E L + ++ + S S P Q +
Sbjct: 637 EDSELFELDYCLKGLKLPSRTWSPPFESEDSQKHNQSEYEDSAGECCSCPKTDSQILKEL 696
Query: 281 PPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMV 340
++ +V + ++ V ++ +
Sbjct: 697 EESSFRKTFEDYLHNVV-FVPRPSRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLR 755
Query: 341 PGEKCMIQV---NSVSYSVESAHPLQINHTISPN------PATYVAALVDASNVTLEFPR 391
I++ N + + ++ P + + + V L +
Sbjct: 756 HFTGYRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQE 815
Query: 392 PE---GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTI 448
P+ G I Y V++R G E ++ + + + L+PG Y I
Sbjct: 816 PKEPNGLIVLYEVSYRRYGDE-------ELHLCDTRKHFALERGCRLRGLSPG-NYSVRI 867
Query: 449 RTVS 452
R S
Sbjct: 868 RATS 871
Score = 42.2 bits (98), Expect = 0.001
Identities = 18/109 (16%), Positives = 32/109 (29%), Gaps = 22/109 (20%)
Query: 605 TLHTSIVIGDLKPHRNYTFTVI---VRSGTESSVLRRSLPVSAIFQTHESLPGKMDRTIV 661
H ++ LKP Y V S + +S + QT + P
Sbjct: 546 QNHPGWLMRGLKPWTQYAIFVKTLVTFSDERRTYGAKSDIIY--VQTDATNPS------- 596
Query: 662 DTWHFVRFFQAEKFHPIDVQPGDITFEWSLPGSEQNGVIRKFTISYAQE 710
+ I +W P S+ NG I + + + ++
Sbjct: 597 ---------VPLDPISVSNSSSQIILKWKPP-SDPNGNITHYLVFWERQ 635
Score = 41.1 bits (95), Expect = 0.003
Identities = 31/180 (17%), Positives = 56/180 (31%), Gaps = 29/180 (16%)
Query: 135 GDCDNGSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNG-------- 186
+ V+K V+ L Y I +QA +
Sbjct: 719 SRKRRSLGDVGNAGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSV 778
Query: 187 ---------MESPSFPIIEDLRPIEFG---LNISWK--SDVNSRQDNFEVIYNRNDTITE 232
E+ + I+ + F +++ W+ + N +EV Y R
Sbjct: 779 AAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEEL 838
Query: 233 DPITVVTTDSKL---LLENLYPGAGYSIQVFAIS---HGLRSEPHDYFQAVYPKPPTNLT 286
+ L L PG YS+++ A S +G +EP ++ Y P+N+
Sbjct: 839 HLCDTRKHFALERGCRLRGLSPGN-YSVRIRATSLAGNGSWTEPTYFYVTDYLDVPSNIA 897
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 77.8 bits (192), Expect = 3e-16
Identities = 35/182 (19%), Positives = 65/182 (35%), Gaps = 22/182 (12%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAE 335
P PP +L +++ + +V + W P+ GS Y + R K + + +
Sbjct: 6 PGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWK 65
Query: 336 VTDMVPGEKCMIQV---NSVSYSVESAHPLQINHTISPNPATYVAAL-VDASNVTLEFPR 391
V + G +V N + + + + P P + + V ++V+L + +
Sbjct: 66 VDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSWEK 125
Query: 392 PE----GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFT 447
PE RI Y+V + S + T E I L G +Y F
Sbjct: 126 PEHDGGSRILGYIVEMQ----TKGSDKWATCATVKVTE-------ATITGLIQGEEYSFR 174
Query: 448 IR 449
+
Sbjct: 175 VS 176
Score = 57.4 bits (139), Expect = 3e-09
Identities = 24/119 (20%), Positives = 43/119 (36%), Gaps = 14/119 (11%)
Query: 520 TDRKVTFNNLTPGKLYNFTVWTV-ADGV-----LSTPIQRHDRLYPEPITRINATEITDT 573
+ L G Y F V G+ + ++ +R P P +I ++T
Sbjct: 60 HKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASER--PLPPGKITLMDVTRN 117
Query: 574 SVSLTWDSPRGEYNA----FEVQY--LNTEGFLIQNLTLHTSIVIGDLKPHRNYTFTVI 626
SVSL+W+ P + + + V+ ++ + T I L Y+F V
Sbjct: 118 SVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVS 176
Score = 48.5 bits (116), Expect = 3e-06
Identities = 26/156 (16%), Positives = 51/156 (32%), Gaps = 27/156 (17%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNA----FEVQYLNTEGFLIQNLTLH---TSIV 611
P P + E+T TSV+LTWD P + + + V+ + + + TS
Sbjct: 6 PGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWK 65
Query: 612 IGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFFQ 671
+ L+ +Y F V+ + + + ++ P
Sbjct: 66 VDQLQEGCSYYFRVLAENEYGIGLP--AETAESV--KASERPL----------------P 105
Query: 672 AEKFHPIDVQPGDITFEWSLPGSEQNGVIRKFTISY 707
K +DV ++ W P + I + +
Sbjct: 106 PGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEM 141
Score = 45.4 bits (108), Expect = 2e-05
Identities = 29/148 (19%), Positives = 48/148 (32%), Gaps = 24/148 (16%)
Query: 138 DNGSKISY--VEIETLNGDSNQMF---VDKTEYVLESLLPGRKYSINVQAV-SNGMESPS 191
D GSKI VE + KT + ++ L G Y V A G+ P+
Sbjct: 32 DGGSKIKNYIVEKRESTRKAYSTVATNCHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPA 91
Query: 192 FPII-----------EDLRPIEFG---LNISWK---SDVNSRQDNFEVIYNRNDTITEDP 234
+ ++ +++SW+ D SR + V +
Sbjct: 92 ETAESVKASERPLPPGKITLMDVTRNSVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWAT 151
Query: 235 ITVVTTDSKLLLENLYPGAGYSIQVFAI 262
V ++ + L G YS +V A
Sbjct: 152 CATV-KVTEATITGLIQGEEYSFRVSAQ 178
Score = 43.5 bits (103), Expect = 1e-04
Identities = 36/184 (19%), Positives = 61/184 (33%), Gaps = 28/184 (15%)
Query: 370 PNPATYVAAL-VDASNVTLEFPRPEGR----IEYYLVTWRGIGPEATSTELFTKNVTNDP 424
P P + V ++VTL + P I+ Y+V R +A ST + T+
Sbjct: 6 PGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTS-- 63
Query: 425 EDKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGVTSLSARTMPLIESEV------LVVN 478
+DQL G Y F + + E G+ + + SE + +
Sbjct: 64 --------WKVDQLQEGCSYYFRVLAEN---EYGIGLPAETAESVKASERPLPPGKITLM 112
Query: 479 NQQSTDSVTLRYTP---QNSNHFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLY 535
+ SV+L + + Y + A + T L G+ Y
Sbjct: 113 DVTRN-SVSLSWEKPEHDGGSRILGYIVEMQTKGSDKWATCATVKVTEATITGLIQGEEY 171
Query: 536 NFTV 539
+F V
Sbjct: 172 SFRV 175
Score = 36.6 bits (85), Expect = 0.022
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 138 DNGSKIS--YVEIETLNGDSNQMF--VDKTEYVLESLLPGRKYSINVQAV-SNGMESPS 191
D GS+I VE++T D V TE + L+ G +YS V A G+ P
Sbjct: 129 DGGSRILGYIVEMQTKGSDKWATCATVKVTEATITGLIQGEEYSFRVSAQNEKGISDPR 187
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 76.6 bits (188), Expect = 6e-16
Identities = 40/192 (20%), Positives = 61/192 (31%), Gaps = 30/192 (15%)
Query: 482 STDSVTLRYTPQNSNHFDFYR--FTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTV 539
+S +++ +H Y + E T L PG +Y +
Sbjct: 14 QPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQL 73
Query: 540 WTVADG-------------------VLSTPIQRHDRLYPEPITRINATEITDTSVSLTWD 580
++ +T P T + TEIT +S ++W
Sbjct: 74 ISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWV 133
Query: 581 SPRGEYNAFEVQY-LNTEGFLIQNLTL---HTSIVIGDLKPHRNYTFTVIVRSGTESSVL 636
S + F V+Y L+ EG Q L L TS+ I DL P R Y V S
Sbjct: 134 SASDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQS- 192
Query: 637 RRSLPVSAIFQT 648
+ + QT
Sbjct: 193 ----LILSTSQT 200
Score = 66.2 bits (161), Expect = 2e-12
Identities = 27/184 (14%), Positives = 68/184 (36%), Gaps = 22/184 (11%)
Query: 205 LNISWKSDVNSRQDNFEVIYNRNDTITE-DPITVVTTDSKLLLENLYPGAGYSIQVFAIS 263
I W + S + + + +++ T+ + ++ L PG Y Q+ +I
Sbjct: 18 HPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGLKPGVVYEGQLISIQ 77
Query: 264 HGLRSEPHDYFQAV-------------------YPKPPTNLTLEKTSSNAVLVKWKEPVG 304
E + P T+ ++ + ++++ +V W
Sbjct: 78 QYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSASD 137
Query: 305 SIFTEYSIRYRTEEDKTWVRLPNV-GTSLEAEVTDMVPGEKCMIQVNSVSYSVESAHPLQ 363
++ + + + Y E+ + ++ T+ + D++PG K ++ V +S E + L
Sbjct: 138 TV-SGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILS 196
Query: 364 INHT 367
+ T
Sbjct: 197 TSQT 200
Score = 65.5 bits (159), Expect = 5e-12
Identities = 25/206 (12%), Positives = 61/206 (29%), Gaps = 29/206 (14%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNV-GTSLEAEVTDM 339
+T + N+ ++W P S ++Y +R+R + + + G + +
Sbjct: 4 VEVFITETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGL 63
Query: 340 VPGEKCMIQVNSVSYSVES-------------------AHPLQINHTISPNPATYVAALV 380
PG Q+ S+ + + +
Sbjct: 64 KPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEI 123
Query: 381 DASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTP 440
AS+ + + + + V + + + + + I L P
Sbjct: 124 TASSFVVSWVSASDTVSGFRVEYE-----LSEEGDEPQYLDLPSTAT----SVNIPDLLP 174
Query: 441 GVKYQFTIRTVSYNLESGVTSLSART 466
G KY + +S + E + +++T
Sbjct: 175 GRKYIVNVYQISEDGEQSLILSTSQT 200
Score = 47.7 bits (113), Expect = 4e-06
Identities = 19/152 (12%), Positives = 39/152 (25%), Gaps = 14/152 (9%)
Query: 561 PITRINATEITDTSVSLTWDSPR-GEYNAFEVQYLNTEGF-LIQNLTL---HTSIVIGDL 615
I T S + W++P+ + + +++ + T+ S I L
Sbjct: 4 VEVFITETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTIKGL 63
Query: 616 KPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFFQAEKF 675
KP Y +I + R + T + T +
Sbjct: 64 KPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVT-- 121
Query: 676 HPIDVQPGDITFEWSLPGSEQNGVIRKFTISY 707
++ W + F + Y
Sbjct: 122 ---EITASSFVVSWVSAS----DTVSGFRVEY 146
Score = 46.2 bits (109), Expect = 2e-05
Identities = 30/226 (13%), Positives = 59/226 (26%), Gaps = 64/226 (28%)
Query: 76 SGPEPLPVLDLTAVMDDKTGDLFISWKPDNASYQDMYKISIKSILLEEEHQKQFLMGFLG 135
SGP + + + I W S+ Y + + ++ + G
Sbjct: 1 SGPVEVFI----TETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPG--- 53
Query: 136 DCDNGSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESP----- 190
Y ++ L PG Y + ++
Sbjct: 54 -------------------------HLNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFD 88
Query: 191 ------SFPIIEDLRPIEF-------------------GLNISWKSDVNSRQDNFEVIYN 225
S P+ + E +SW + F V Y
Sbjct: 89 FTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWV-SASDTVSGFRVEYE 147
Query: 226 RNDTITE-DPITVVTTDSKLLLENLYPGAGYSIQVFAISHGLRSEP 270
++ E + + +T + + + +L PG Y + V+ IS
Sbjct: 148 LSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSL 193
>1g4w_R Protein tyrosine phosphatase SPTP; virulence factor, GTPase
activating protein, 4-helix bundle, disorder, signaling
protein; 2.20A {Salmonella typhimurium} SCOP: a.24.11.1
c.45.1.2 PDB: 1g4u_S
Length = 383
Score = 79.5 bits (196), Expect = 1e-15
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERV-WMVQTEQQYICIHQCLLAVLE 1152
R+GT+ A + + ++ + R R M++ Q++ + +L
Sbjct: 327 RTGTMAAALVLK----DNPHSNLEQVRADFRDSRNNRMLEDASQFVQLKAMQAQLLM 379
Score = 76.1 bits (187), Expect = 2e-14
Identities = 11/91 (12%), Positives = 30/91 (32%), Gaps = 6/91 (6%)
Query: 1003 VETSRPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFTNI 1062
V+ + L + +++ + + E E+++ G T + + ++I
Sbjct: 98 VDKASTHELTQAVKKIHVIAKELK-NVTAELEKIE-AGAPMPQTMSGPTLGLARFAVSSI 155
Query: 1063 LPYDHSRFKLQPVDDEEGSDYINANYVPGHN 1093
++ KL + +N G
Sbjct: 156 PINQQTQVKLS----DGMPVPVNTLTFDGKP 182
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 74.8 bits (184), Expect = 5e-15
Identities = 36/198 (18%), Positives = 58/198 (29%), Gaps = 20/198 (10%)
Query: 205 LNISWKSDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAIS- 263
++ +W + + + V Y + + + + L NLYP Y ++V A
Sbjct: 22 IHFNWLP-PSGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGA 80
Query: 264 --HGLRSEPHDY--FQAVYPKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTE 317
G S Q V P P L SS + W EP T Y + Y
Sbjct: 81 QGEGPYSSLVSCRTHQEV-PSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLV 139
Query: 318 EDKTWVRLPNV------GTSLEAEVTDMVPGEKCMIQV---NSVSYSVESAHPLQINHTI 368
D P + + ++ + V N + E IN
Sbjct: 140 NDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPER--EAIINLAT 197
Query: 369 SPNPATYVAALVDASNVT 386
P + + D V
Sbjct: 198 QPKRPMSIPIIPDIPIVD 215
Score = 73.3 bits (180), Expect = 2e-14
Identities = 31/176 (17%), Positives = 61/176 (34%), Gaps = 12/176 (6%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMV 340
P N + S + W P G Y ++Y + D E+T++
Sbjct: 8 APQNPNAKAAGSRKIHFNWLPPSGKP-MGYRVKYWIQGDSESEAHLLDSKVPSVELTNLY 66
Query: 341 PGEKCMIQV---NSVSYSVESAHPLQINHTISPNPATYVAAL-VDASNVTLEF---PRPE 393
P ++V + S+ H P+ +A V ++ L +
Sbjct: 67 PYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETN 126
Query: 394 GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIR 449
G I Y V + + + K + ++P K+ +LI+ L Y++T++
Sbjct: 127 GEITAYEVCYGLVNDDNRPIGPMKKVLVDNP----KNRMLLIENLRESQPYRYTVK 178
Score = 64.4 bits (157), Expect = 2e-11
Identities = 27/146 (18%), Positives = 48/146 (32%), Gaps = 24/146 (16%)
Query: 565 INATEITDTSVSLTWDSPRGEYNAFEVQYL---NTEGFLIQNLTLHTSIVIGDLKPHRNY 621
NA + W P G+ + V+Y ++E + S+ + +L P+ +Y
Sbjct: 12 PNAKAAGSRKIHFNWLPPSGKPMGYRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDY 71
Query: 622 TFTVIVRSGTESSVLRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFFQAEKFHPIDVQ 681
V S VS +TH+ +P + + V
Sbjct: 72 EMKVCAYGAQGEGP--YSSLVS--CRTHQEVPSEP----------------GRLAFNVVS 111
Query: 682 PGDITFEWSLPGSEQNGVIRKFTISY 707
W+ P +E NG I + + Y
Sbjct: 112 STVTQLSWAEP-AETNGEITAYEVCY 136
Score = 55.2 bits (133), Expect = 3e-08
Identities = 32/196 (16%), Positives = 57/196 (29%), Gaps = 34/196 (17%)
Query: 142 KISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESP-SFPII----- 195
++ Y +++ + L +L P Y + V A E P S +
Sbjct: 37 RVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQ 96
Query: 196 ------EDLRPIEFG---LNISWK--SDVNSRQDNFEVIY---NRNDTITEDPITVVTTD 241
L +SW ++ N +EV Y N ++ V+ +
Sbjct: 97 EVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDN 156
Query: 242 SK---LLLENLYPGAGYSIQVFAISH---GLRSEPHDYFQ---AVYPKPPTNLTLEKTSS 292
K LL+ENL Y V A + G E P + +
Sbjct: 157 PKNRMLLIENLRESQPYRYTVKARNGAGWGPEREAIINLATQPKRPMSIPIIPDIPIVDA 216
Query: 293 NA-----VLVKWKEPV 303
+ + + + V
Sbjct: 217 QSGEDYDSFLMYSDDV 232
Score = 53.2 bits (128), Expect = 1e-07
Identities = 31/161 (19%), Positives = 57/161 (35%), Gaps = 18/161 (11%)
Query: 482 STDSVTLRYTPQNSNHFDFYRFTLSEPDIPVIEKAANDTDR-KVTFNNLTPGKLYNFTV- 539
+ + + P + YR E D+ V NL P Y V
Sbjct: 18 GSRKIHFNWLPPSGKPMG-YRVKYWIQGDSESEAHLLDSKVPSVELTNLYPYCDYEMKVC 76
Query: 540 -WTVA-DGVLSTPIQ-RHDRLYPEPITRINATEITDTSVSLTWDSPR---GEYNAFEVQY 593
+ +G S+ + R + P R+ ++ T L+W P GE A+EV Y
Sbjct: 77 AYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAETNGEITAYEVCY 136
Query: 594 ---------LNTEGFLIQNLTLHTSIVIGDLKPHRNYTFTV 625
+ ++ + + ++I +L+ + Y +TV
Sbjct: 137 GLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTV 177
Score = 44.8 bits (106), Expect = 6e-05
Identities = 38/227 (16%), Positives = 64/227 (28%), Gaps = 36/227 (15%)
Query: 380 VDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLT 439
+ + + P G+ Y V + G + L V + + L
Sbjct: 17 AGSRKIHFNWLPPSGKPMGYRVKYWIQGDSESEAHLLDSKVP----------SVELTNLY 66
Query: 440 PGVKYQFTIRTVSYNLE-SGVTS--LSARTMPLIESEVLVVN-NQQSTDSVTLRYT-PQN 494
P Y+ + +Y + G S +S RT + SE + N S+ L + P
Sbjct: 67 PYCDYEMKVC--AYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAEPAE 124
Query: 495 SN--------HFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVW--TVA- 543
+N + N +R + NL + Y +TV A
Sbjct: 125 TNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAG 184
Query: 544 DGVLSTPIQRHDRLYPEP--------ITRINATEITDTSVSLTWDSP 582
G I P I ++A D L +
Sbjct: 185 WGPEREAIINLATQPKRPMSIPIIPDIPIVDAQSGEDYDSFLMYSDD 231
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 75.6 bits (186), Expect = 8e-15
Identities = 39/264 (14%), Positives = 77/264 (29%), Gaps = 27/264 (10%)
Query: 290 TSSNAVLVKWKEPV-----GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGEK 344
V + WK G I +Y + T L + ++
Sbjct: 20 QGYRTVQLVWKTLPPFEANGKI-LDYEVTLT-RWKSHLQNYTVNATKLTVNL----TNDR 73
Query: 345 CMIQV---NSVSYSVESAHPLQINHTISPNPATYVAALVDASNVTLEFPRPEGRIEYYLV 401
+ + N V S + + + +P + A + + +E+ P ++ Y++
Sbjct: 74 YLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYIL 133
Query: 402 TWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGVTS 461
W + +A + + ED H L L Y T+ V + S
Sbjct: 134 EWCVLSDKAPCITDWQQ------EDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPES 187
Query: 462 LSARTMPLIESEVLVVN-NQQSTDSVTLRYTP-----QNSNHFDFYRFTLSEPDIPVIEK 515
+ A S+ V + + L + QN Y
Sbjct: 188 IKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNG-FIRNYTIFYRTIIGNETAV 246
Query: 516 AANDTDRKVTFNNLTPGKLYNFTV 539
+ + + T ++LT LY +
Sbjct: 247 NVDSSHTEYTLSSLTSDTLYMVRM 270
Score = 72.9 bits (179), Expect = 6e-14
Identities = 38/236 (16%), Positives = 72/236 (30%), Gaps = 28/236 (11%)
Query: 139 NGSKISY-VEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAV-SNGMESPSFPII- 195
NG + Y V + V+ T+ L L +Y + G + I
Sbjct: 38 NGKILDYEVTLTRWKSHLQNYTVNATK--LTVNLTNDRYLATLTVRNLVGKSDAAVLTIP 95
Query: 196 ----EDLRPIEF--------GLNISWKSDVNSRQD---NFEVIYNRNDTITEDPITVVTT 240
+ P+ L + W + S + + V+ ++ IT+ T
Sbjct: 96 ACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTV 155
Query: 241 DSKLLLENLYPGAGYSIQVFAISH---GLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVLV 297
L NL Y I V + G Y + P + +K N ++
Sbjct: 156 HRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVL 215
Query: 298 KWKEP----VGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQV 349
+W + Y+I YRT + + E ++ + M+++
Sbjct: 216 EWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVD-SSHTEYTLSSLTSDTLYMVRM 270
Score = 70.2 bits (172), Expect = 5e-13
Identities = 35/218 (16%), Positives = 59/218 (27%), Gaps = 36/218 (16%)
Query: 501 YRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVW---TVADGVLSTPIQRHDRL 557
Y TL+ + N T Y T+ V +
Sbjct: 44 YEVTLTRWKSHLQNYTVNAT----KLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDF 99
Query: 558 YPEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEG-------FLIQNLTLHTSI 610
D + + W +PR + +++ + ++ T+H +
Sbjct: 100 QATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTY 159
Query: 611 VIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFF 670
+ G+L + Y TV P S ++ P
Sbjct: 160 LRGNLAESKCYLITVTPVYADGP-----GSPESIKAYLKQAPPS---------------- 198
Query: 671 QAEKFHPIDVQPGDITFEWS-LPGSEQNGVIRKFTISY 707
+ V + EW LP QNG IR +TI Y
Sbjct: 199 KGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFY 236
Score = 67.5 bits (165), Expect = 4e-12
Identities = 34/247 (13%), Positives = 68/247 (27%), Gaps = 30/247 (12%)
Query: 394 GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSY 453
G+I Y VT + + +T N T + +Y T+ +
Sbjct: 39 GKILDYEVTLT---RWKSHLQNYTVNATK------------LTVNLTNDRYLATLTVRNL 83
Query: 454 NLESGVTSLSARTMPLIESE-VLVVNNQQSTDSVTLRYTPQNSNHFDF---YRFTL-SEP 508
+S L+ + V+ + + + + +T + + + P
Sbjct: 84 VGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRESVKKYILEWCVLSDKAP 143
Query: 509 DIPVIEKAANDTDRKVTFNNLTPGKLYNFTVW---TVADGVLSTPIQRHDRLYPEPITRI 565
I ++ R NL K Y TV G + + P +
Sbjct: 144 CITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTV 203
Query: 566 NATEITDTSVSLTWDSP-----RGEYNAFEVQY--LNTEGFLIQNLTLHTSIVIGDLKPH 618
++ L WD G + + Y + + + HT + L
Sbjct: 204 RTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSD 263
Query: 619 RNYTFTV 625
Y +
Sbjct: 264 TLYMVRM 270
Score = 63.3 bits (154), Expect = 9e-11
Identities = 36/266 (13%), Positives = 71/266 (26%), Gaps = 40/266 (15%)
Query: 205 LNISWK----SDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVF 260
+ + WK + N + ++EV R + + TV T + L Y +
Sbjct: 25 VQLVWKTLPPFEANGKILDYEVTLTRWKSHLQ-NYTVNATKLTVNL----TNDRYLATLT 79
Query: 261 AISHGLRSEPHDYF----QAVYPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYR- 315
+ +S+ P +L N + V+W P S+ +Y + +
Sbjct: 80 VRNLVGKSDAAVLTIPACDFQATHPVMDLKAF-PKDNMLWVEWTTPRESV-KKYILEWCV 137
Query: 316 ----TEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQV---NSVSYSVESAHPLQINHTI 368
W + ++ + +I V + + +
Sbjct: 138 LSDKAPCITDWQQEDGTVHR-TYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAP 196
Query: 369 SPNPATYVAALVDASNVTL--EFPRPE---GRIEYYLVTWRGIGPEATSTELFTKNVTND 423
T V + L + + G I Y + +R I V D
Sbjct: 197 PSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGN-------ETAVNVD 249
Query: 424 PEDKDKHVHILIDQLTPGVKYQFTIR 449
+ LT Y +
Sbjct: 250 SSHT----EYTLSSLTSDTLYMVRMA 271
Score = 52.5 bits (126), Expect = 3e-07
Identities = 32/209 (15%), Positives = 61/209 (29%), Gaps = 47/209 (22%)
Query: 71 TRQNLSGPEPLPVLDLTAVMDDKTGDLFISWKPDNASYQDMYKISIKSILLEEEHQKQFL 130
T PV+DL A D L++ W S + Y + + +
Sbjct: 93 TIPACDFQATHPVMDLKAFPKDNM--LWVEWTTPRESVKK-YILEWCVLSDKAP------ 143
Query: 131 MGFLGDCDNGSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESP 190
+ + +G + Y+ +L + Y I V V
Sbjct: 144 -------------CITDWQQEDGTVH------RTYLRGNLAESKCYLITVTPVYADGPGS 184
Query: 191 SFPII----ED-------LRPIEFG---LNISWK----SDVNSRQDNFEVIYNRNDTITE 232
I + +R + G + W N N+ + Y R E
Sbjct: 185 PESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFY-RTIIGNE 243
Query: 233 DPITVVTTDSKLLLENLYPGAGYSIQVFA 261
+ V ++ ++ L +L Y +++ A
Sbjct: 244 TAVNVDSSHTEYTLSSLTSDTLYMVRMAA 272
Score = 31.7 bits (72), Expect = 1.4
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
Query: 139 NGSKISY-VEIETLNGDSNQMFVD--KTEYVLESLLPGRKYSINVQAVSNGMESPS 191
NG +Y + T+ G+ + VD TEY L SL Y + + A ++
Sbjct: 226 NGFIRNYTIFYRTIIGNETAVNVDSSHTEYTLSSLTSDTLYMVRMAAYTDEGGKDG 281
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 72.4 bits (177), Expect = 2e-14
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 8/114 (7%)
Query: 244 LLLENLYPGAGYSIQVFAISHGLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPV 303
LL++++ Y++ ++A L + V P+ P NLT+ S+ +L+ W P
Sbjct: 63 LLMDDVVSADNYTLDLWAGQQLLWKGSFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNPY 122
Query: 304 GSIFT-----EYSIRYRTEEDKTWVRLPNV---GTSLEAEVTDMVPGEKCMIQV 349
Y++ +E D R+ NV SL + + G +V
Sbjct: 123 PPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARV 176
Score = 43.9 bits (103), Expect = 1e-04
Identities = 21/152 (13%), Positives = 42/152 (27%), Gaps = 15/152 (9%)
Query: 489 RYTPQNSNHFDFYRFTLSEPDIPVIEKAANDTDR---KVTFNNLTPGKLYNFTVWTVADG 545
T ++ Y+ + N + +++ Y +W
Sbjct: 25 GPTNCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDLWAGQQL 84
Query: 546 VLSTPIQRHDRLYPEPITRINATEITDTSVSLTWDSPRGEYNA------FEVQY---LNT 596
+ + + + P + ++ LTW +P N + V +
Sbjct: 85 LWKGSFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSENDP 144
Query: 597 EGFLIQNLTLH---TSIVIGDLKPHRNYTFTV 625
F I N+T I LK +Y V
Sbjct: 145 ADFRIYNVTYLEPSLRIAASTLKSGISYRARV 176
Score = 40.8 bits (95), Expect = 0.001
Identities = 20/142 (14%), Positives = 42/142 (29%), Gaps = 26/142 (18%)
Query: 168 ESLLPGRKYSINVQAVSNGMESPSFPIIEDLRP-----------IEFGLNISWK-----S 211
+ ++ Y++++ A + SF E ++P + L ++W
Sbjct: 66 DDVVSADNYTLDLWAGQQLLWKGSFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNPYPPD 125
Query: 212 DVNSRQDNFEVIYNRNDTITEDPITVVTTDSK---LLLENLYPGAGYSIQVFAISHGLR- 267
+ + V + + I VT + L G Y +V A +
Sbjct: 126 NYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARVRAWAQAYNT 185
Query: 268 -----SEPHDYFQAVYPKPPTN 284
S + Y +P
Sbjct: 186 TWSEWSPST-KWHNSYREPFEQ 206
Score = 31.5 bits (71), Expect = 1.2
Identities = 21/156 (13%), Positives = 47/156 (30%), Gaps = 23/156 (14%)
Query: 308 TEYSIRYRTEED--KTWVRLP----NVGTSLEAEVTDMVPGEKCMIQVNSVSYSVESAHP 361
TE + Y+ + +P G + D+V + + + + +
Sbjct: 31 TELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDLWAGQQLLWK-GS 89
Query: 362 LQINHTISPNPATYVAA-LVDASNVTLEFPRP-------EGRIEYYLVTWRGIGPEATST 413
+ + + P + + + L + P + Y + W E
Sbjct: 90 FKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWS----ENDPA 145
Query: 414 ELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIR 449
+ NVT + + I L G+ Y+ +R
Sbjct: 146 DFRIYNVT----YLEPSLRIAASTLKSGISYRARVR 177
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 74.5 bits (182), Expect = 7e-14
Identities = 75/484 (15%), Positives = 148/484 (30%), Gaps = 50/484 (10%)
Query: 205 LNISWK-SDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYP-------GAGYS 256
SWK R ++EV + + + L Y G S
Sbjct: 12 WQCSWKAPSGTGRGTDYEVCIEQRSRSCY-QLEKTSIKIPALSHGDYEITINSLHDFGSS 70
Query: 257 IQVFAISHGLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVL-VKWKEPV----GSIFTEYS 311
F ++ S P P L L S + L +KW + +
Sbjct: 71 TSKFTLNEQNVSLI--------PDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWE 122
Query: 312 IRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQVNSVSYSVESAHPLQINHTISP- 370
I+ +E V+L T+L + T + + + VE + H
Sbjct: 123 IKVLRKESMELVKLVTHQTTLNGKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLE 182
Query: 371 ---NPATYVAALVDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDK 427
+ + + T FP+ + + +T+ + E + L
Sbjct: 183 EWSDWSPVKQISWIPDSQTKVFPQDKVILVGSDITFCCVSQEKVLSALIGHTNCPLIHLD 242
Query: 428 DKHVHILIDQLTPGVKYQFTIRTVSYNLESGVTSLSARTMPLIESEVLVVNNQQSTDSV- 486
++V I I ++ + + + G T + A P ++ +
Sbjct: 243 GENVAIKIRNISVSASSGTNVVFTTEDNIFG-TVIFAGYPPDTPQQLNCETHDLKEIICS 301
Query: 487 ------TLRYTPQNSNHFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVW 540
T P+ +++ F+ + E N++ ++ F L ++YNFT+
Sbjct: 302 WNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTNES-YQLLFQMLPNQEIYNFTLN 360
Query: 541 TV-ADGVLSTPIQRH--DRLYPEPITRINATEITDTSVSLTWDSPR---GEYNAFEVQYL 594
G + I + +++YP T +I T+V L+W P E++
Sbjct: 361 AHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEIK 420
Query: 595 NTEG-------FLIQNLTLHTSIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQ 647
+ + + + L P+ YTF + + T + S
Sbjct: 421 KSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRIRCSTETFWKWSKWSNKKQ--HL 478
Query: 648 THES 651
T E+
Sbjct: 479 TTEA 482
Score = 59.5 bits (143), Expect = 4e-09
Identities = 32/239 (13%), Positives = 64/239 (26%), Gaps = 26/239 (10%)
Query: 137 CDNGSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQ---------AVSNGM 187
C + K+ I N + + + ++ NV V
Sbjct: 220 CVSQEKVLSALIGHTNCPLIHLDGENVAIKIRNISVSASSGTNVVFTTEDNIFGTVIFAG 279
Query: 188 ESPSFPIIEDLRPIEFG-LNISWKSDVNSRQDNFEVI-------YNRNDTITEDPITVVT 239
P P + + + SW + ++ +
Sbjct: 280 YPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSYTLVESFSGKYVRLKRAEAPTN 339
Query: 240 TDSKLLLENLYPGAGYSIQVFAI-SHGLRSEPH--DYFQAVYPKPPTNLTLEKTSSNAVL 296
+LL + L Y+ + A G + + VYP PT+ ++ +S AV
Sbjct: 340 ESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITEKVYPHTPTSFKVKDINSTAVK 399
Query: 297 VKWKEP--VGSIFTEYSIRYRTEEDKTWVRLPNV----GTSLEAEVTDMVPGEKCMIQV 349
+ W P I I + R + +S + + P ++
Sbjct: 400 LSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGVENSSYLVALDKLNPYTLYTFRI 458
Score = 58.3 bits (140), Expect = 8e-09
Identities = 54/390 (13%), Positives = 111/390 (28%), Gaps = 35/390 (8%)
Query: 80 PLPVLDLTAVMDDKTGDLFISWKPDNASYQDMYKISIKSILLEEEHQKQFLMGFLGDCDN 139
P L D T L++ W + + + + +L +E + + N
Sbjct: 85 PDTPEILQLSADFSTSTLYLKWNDRGSVFPHRSNVIWEIKVLRKESMELVKLVTHQTTLN 144
Query: 140 GSKI--SYVEIETLNGDSNQMFVDKTEYVLESLLPGRKY--------SINVQAVSNGMES 189
G + + + FV+ Y+ G + I+ S
Sbjct: 145 GKDTLHHWSWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVF 204
Query: 190 PSFPIIEDLRPIEFGLNISWKSDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENL 249
P + I G +I++ + + + + I D + + + N+
Sbjct: 205 PQDKV------ILVGSDITFCCVSQEKVLSALIGHTNCPLIHLDG-----ENVAIKIRNI 253
Query: 250 YPGAGYSIQVFAISHGLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEP-----VG 304
A V + F P P L E ++ W VG
Sbjct: 254 SVSASSGTNVVF-TTEDNIFGTVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVG 312
Query: 305 SIFTEYSIRYRTEEDKTWVRLPNV--GTSLEAEVTDMVPGEKCMIQVNSVSY--SVESAH 360
T Y++ ++ S + + E +N+ + +S
Sbjct: 313 PRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTI 372
Query: 361 PLQINHTISPNPATYVAAL-VDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKN 419
+ I + P+ T ++++ V L + P + + I + E
Sbjct: 373 LVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVT 432
Query: 420 VTNDPEDKDKHVHILIDQLTPGVKYQFTIR 449
+ + +D+L P Y F IR
Sbjct: 433 IQGVENSSY---LVALDKLNPYTLYTFRIR 459
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 72.5 bits (178), Expect = 2e-13
Identities = 28/181 (15%), Positives = 57/181 (31%), Gaps = 19/181 (10%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAE 335
P P + + + S V + +P G Y + + + W + + G
Sbjct: 196 PSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVV 255
Query: 336 VTDMVPGEKCMIQV---NSVSYSVESAHPLQI-NHTISPNPATYVAALVDASNVTLEFPR 391
+ ++ P I+V N S + P+P + + L +
Sbjct: 256 LNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITK 315
Query: 392 PE---GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTI 448
+ I Y+V +R E E + + HI+++ L + Y+ I
Sbjct: 316 QDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKD---------HIILEHLQWTMGYEVQI 366
Query: 449 R 449
Sbjct: 367 T 367
Score = 61.4 bits (149), Expect = 7e-10
Identities = 32/187 (17%), Positives = 71/187 (37%), Gaps = 18/187 (9%)
Query: 188 ESPSFPIIEDLRPIEFG---LNISWK---SDVNSRQDNFEVIYNRNDTITEDPITVVTTD 241
+ PS P ++ IE +S+ S +++V + +
Sbjct: 194 DVPSSP--YGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQ 251
Query: 242 SKLLLENLYPGAGYSIQVFAISH---GLRSEPHDYFQAVYPKP-PTNLTLEKTSSNAVLV 297
+ ++L NL P Y I+V A++ G S+ + +P P ++ + +S + +
Sbjct: 252 TMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKL 311
Query: 298 KWKEPV--GSIFTEYSIRYRTEEDKTWVRLPNV-GTSLEAEVTDMVPGEKCMIQV---NS 351
+ G+ EY ++YR+++ + V G + + +Q+ N
Sbjct: 312 SITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANR 371
Query: 352 VSYSVES 358
+ YS +
Sbjct: 372 LGYSEPT 378
Score = 57.1 bits (138), Expect = 2e-08
Identities = 38/168 (22%), Positives = 59/168 (35%), Gaps = 25/168 (14%)
Query: 138 DNGSKISY--VEIETLNGDS---NQMFVDKTEYVLESLLPGRKYSINVQAV-SNGMESPS 191
G I + V+++ + + + +T VL +L P Y I V AV G S
Sbjct: 222 HGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYS 281
Query: 192 FPIIEDLRPIEFG--------------LNISWK--SDVNSRQDNFEVIYNRNDTITE-DP 234
I P+ +S D + + V Y D +
Sbjct: 282 KIEIFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLE 341
Query: 235 ITVVTTDSKLLLENLYPGAGYSIQVFAI-SHGLRSEPHDYFQAVYPKP 281
V ++LE+L GY +Q+ A G SEP Y ++ PKP
Sbjct: 342 KKVQGNKDHIILEHLQWTMGYEVQITAANRLGY-SEPTVYEFSMPPKP 388
Score = 49.0 bits (117), Expect = 6e-06
Identities = 16/156 (10%), Positives = 44/156 (28%), Gaps = 28/156 (17%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNA----FEVQY---LNTEGFLIQNLTLHTSIV 611
P + E++ T+ ++++ P ++V + ++++ + T +V
Sbjct: 196 PSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQTMVV 255
Query: 612 IGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFFQ 671
+ +L+P+ Y V +G + P
Sbjct: 256 LNNLEPNTTYEIRVAAVNGKGQG---DYSKIEIFQTLPVREPS----------------- 295
Query: 672 AEKFHPIDVQPGDITFEWSLPGSEQNGVIRKFTISY 707
H + + I ++ + Y
Sbjct: 296 PPSIHGQPSSGKSFKLSIT-KQDDGGAPILEYIVKY 330
Score = 38.2 bits (89), Expect = 0.014
Identities = 21/123 (17%), Positives = 40/123 (32%), Gaps = 15/123 (12%)
Query: 516 AANDTDRKVTFNNLTPGKLYNFTVWTV-ADGV----LSTPIQRHDRLYPEPITRINATEI 570
++ V NNL P Y V V G Q P P I+
Sbjct: 246 RSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSP-PSIHGQPS 304
Query: 571 TDTSVSLTWDSPRGEYNAFEVQYL-------NTEGFLIQNLTLH-TSIVIGDLKPHRNYT 622
+ S L+ + + A ++Y+ + +L + + + I++ L+ Y
Sbjct: 305 SGKSFKLSIT-KQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYE 363
Query: 623 FTV 625
+
Sbjct: 364 VQI 366
Score = 37.9 bits (88), Expect = 0.019
Identities = 25/173 (14%), Positives = 57/173 (32%), Gaps = 26/173 (15%)
Query: 380 VDASNVTLEFPRPEG----RIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILI 435
+ + + F +P+ I +Y V + + E K V + +++
Sbjct: 207 LSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIW------KIVRSHGVQT----MVVL 256
Query: 436 DQLTPGVKYQFTIRTVSYNLESGV----TSLSARTMPLIESEVLVVNNQ-QSTDSVTLRY 490
+ L P Y+ + V+ G +T+P+ E ++ Q S S L
Sbjct: 257 NNLEPNTTYEIRVAAVN---GKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKLSI 313
Query: 491 TP---QNSNHFDFY-RFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTV 539
T + ++ ++ + + +EK + +L Y +
Sbjct: 314 TKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQI 366
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 66.8 bits (163), Expect = 2e-13
Identities = 27/118 (22%), Positives = 47/118 (39%), Gaps = 5/118 (4%)
Query: 535 YNFTVWTVADGVLSTPIQRHDRLYPEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYL 594
++ D + T++ T TS+ ++WD+P + + Y
Sbjct: 5 HHHHSSDYKDDDDKGENLYFQGSVSDVPTKLEVVAATPTSLLISWDAPAVTVRYYRITYG 64
Query: 595 NTEG-FLIQNLTLH---TSIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQT 648
T G +Q T+ ++ I LKP +YT TV +G L S P+S ++T
Sbjct: 65 ETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLM-LAGSKPISINYRT 121
Score = 56.8 bits (137), Expect = 7e-10
Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 5/117 (4%)
Query: 255 YSIQVFAISHGLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRY 314
+ + YFQ PT L + + ++L+ W P ++ Y I Y
Sbjct: 5 HHHHSSDYKDDDDKGENLYFQGSVSDVPTKLEVVAATPTSLLISWDAPAVTV-RYYRITY 63
Query: 315 RTEEDKTWVRLPNV-GTSLEAEVTDMVPGEKCMIQV---NSVSYSVESAHPLQINHT 367
+ V+ V G+ A ++ + PG I V + + + P+ IN+
Sbjct: 64 GETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPISINYR 120
Score = 41.8 bits (98), Expect = 2e-04
Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 13/122 (10%)
Query: 349 VNSVSYSVESAHPLQINHTISPNPATYVAALVDASNVTLEFPRPEGRIEYYLVTWRGIGP 408
+ + L ++S P +++ + + P + YY +T+ G
Sbjct: 9 SSDYKDDDDKGENLYFQGSVSDVPTKLEVVAATPTSLLISWDAPAVTVRYYRITYGETGG 68
Query: 409 EATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVS----YNLESGVTSLSA 464
+ E + I L PGV Y T+ V+ S S++
Sbjct: 69 NSPVQEFTVPGSKS---------TATISGLKPGVDYTITVYAVTGLRLMLAGSKPISINY 119
Query: 465 RT 466
RT
Sbjct: 120 RT 121
Score = 37.2 bits (86), Expect = 0.006
Identities = 17/102 (16%), Positives = 37/102 (36%), Gaps = 5/102 (4%)
Query: 443 KYQFTIRTVSYNLESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQNSNHFDFYR 502
+ + + G ++ + +++ VV + S+ + + +YR
Sbjct: 4 HHHHHSSDYKDDDDKGENLYFQGSVSDVPTKLEVVA--ATPTSLLISWDAPAVT-VRYYR 60
Query: 503 --FTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTV 542
+ + + PV E + T + L PG Y TV+ V
Sbjct: 61 ITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAV 102
Score = 34.5 bits (79), Expect = 0.046
Identities = 14/52 (26%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 142 KISYVEIETLNGDSNQMFVD--KTEYVLESLLPGRKYSINVQAVSNGMESPS 191
+I+Y E N + V K+ + L PG Y+I V AV+ +
Sbjct: 60 RITYGETGG-NSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGLRLMLA 110
Score = 30.6 bits (69), Expect = 0.92
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 205 LNISWKSDVNSRQDNFEVIYNR-NDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAIS 263
L ISW + + + Y TV + S + L PG Y+I V+A++
Sbjct: 45 LLISWDA-PAVTVRYYRITYGETGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVT 103
Query: 264 HGLRSEP 270
Sbjct: 104 GLRLMLA 110
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 72.0 bits (175), Expect = 4e-13
Identities = 50/404 (12%), Positives = 102/404 (25%), Gaps = 48/404 (11%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEPVGSIF-TEYSIRYRTEEDKTWVRLPNV----GTSLEAE 335
P + ++ N +L +W S+ +S Y+ W++L T
Sbjct: 10 SPQKVEVDIIDDNFIL-RWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNFS 68
Query: 336 VTDMVPGEKCMIQVNSVSY----SVESAHPLQINHTISPNPATYVAALVDASNVTLEFPR 391
+ E+ +++ + E P ++ A A + +
Sbjct: 69 SLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGT 128
Query: 392 PEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPED-KDKHVHILIDQLTPGVKYQFTIRT 450
+ V W G T + + KN + E ++ + I +L+P Y ++
Sbjct: 129 KDS------VMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKA 182
Query: 451 VSYNLESGVTSLSARTMPLIESEVLVVNNQQSTDSVT-------------LRYTPQNSNH 497
+ L + + Q +
Sbjct: 183 ALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHA 242
Query: 498 FDFYRFTLSEPDIPVIEKAANDTDRKVTF-NNLTPGKLYNFTVWTVADGVLSTPIQRHDR 556
F I N + F N+ +Y V S +
Sbjct: 243 FLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTS-FWSEEIK 301
Query: 557 LYPEPITRI----NATEITDTSVSLTWDSPRGEYNA---------FEVQYL-NTEGFLIQ 602
E + S + +P+ N +E+ + NT +
Sbjct: 302 FDTEIQAFLLPPVFNIRSLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERK 361
Query: 603 NLTLHTSIVIGDLKPHRNYTFTV--IVRSGTESSVLRRSLPVSA 644
+ T + + +LKP Y + S V
Sbjct: 362 IIEKKTDVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCE 405
Score = 60.4 bits (145), Expect = 1e-09
Identities = 40/359 (11%), Positives = 96/359 (26%), Gaps = 67/359 (18%)
Query: 168 ESLLPGRKYSINVQAVSNGMESPS-------------FPIIEDLRPIEFGLNISWKS--- 211
L + + ++A S P L + + I
Sbjct: 70 LKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTK 129
Query: 212 -----DVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAISHGL 266
++ + ++ +N + E+ I S+ + L P Y ++V A
Sbjct: 130 DSVMWALDGLSFTYSLVIWKNSSGVEERIE--NIYSRHKIYKLSPETTYCLKVKAALLTS 187
Query: 267 ------RSEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPVGSI------FTEYSIRY 314
PP + ++KW ++ + R
Sbjct: 188 WKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRN 247
Query: 315 RTEEDKTWVRLPNVG--TSLEAEVTD-MVPGEKCMIQVNSVSYSVESAHPLQI-----NH 366
W ++P+ + + + +++V + + S +I
Sbjct: 248 PGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQ 307
Query: 367 TISPNPATYVAALVDASNVTLEFPR-------PEGRIEYYLVTWRGIGPEATSTELFTKN 419
P + +L D+ ++ + P+ + Y + + A + K
Sbjct: 308 AFLLPPVFNIRSLSDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERKIIEKKT 367
Query: 420 VTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGVTS-----LSARTMPLIESE 473
+ + L P Y R + + + +S + +T P S+
Sbjct: 368 ------------DVTVPNLKPLTVYCVKARAHTMDEKLNKSSVFSDAVCEKTKPGNTSK 414
Score = 50.4 bits (119), Expect = 3e-06
Identities = 35/304 (11%), Positives = 80/304 (26%), Gaps = 36/304 (11%)
Query: 390 PRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIR 449
+ ++ G + +N+T+ + +L + + IR
Sbjct: 30 SDESVGNVTFSFDYQKTGMDNWIKLSGCQNITS------TKCNFSSLKLNVYEEIKLRIR 83
Query: 450 TVSYNLESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQNSN--------HFDFY 501
N S S + V+ + ++ + +P + Y
Sbjct: 84 AEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTY 143
Query: 502 RFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTPI------QRHD 555
+ + +E+ + + L+P Y V + +
Sbjct: 144 SLVIWKNSSG-VEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTT 202
Query: 556 RLYPEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYL--------------NTEGFLI 601
P + + + L WD F+VQ+L +
Sbjct: 203 VENELPPPENIEVSVQNQNYVLKWDYTYANMT-FQVQWLHAFLKRNPGNHLYKWKQIPDC 261
Query: 602 QNLTLHTSIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPGKMDRTIV 661
+N+ + ++ Y V G +S + Q P R++
Sbjct: 262 ENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLS 321
Query: 662 DTWH 665
D++H
Sbjct: 322 DSFH 325
Score = 45.0 bits (105), Expect = 1e-04
Identities = 30/253 (11%), Positives = 66/253 (26%), Gaps = 47/253 (18%)
Query: 139 NGSKISYVEIETLNGDSNQMFVD--KTEYVLESLLPGRKYSINVQAVSNGMESPSF---- 192
+G +Y + N + ++ + + + L P Y + V+A
Sbjct: 137 DGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPV 196
Query: 193 -------------PIIEDLRPIEFGLNISWKSDVNSRQDNFEVIYNRNDTITE------- 232
P ++ + W D F+V +
Sbjct: 197 HCIKTTVENELPPPENIEVSVQNQNYVLKW--DYTYANMTFQVQWLHAFLKRNPGNHLYK 254
Query: 233 ----DPITVVTTDSKLLLENLYPGAGYSIQVFAISHGLRSEPHDYFQAVY----PKPPTN 284
V T + +N++ Y ++V A S + + P
Sbjct: 255 WKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPV 314
Query: 285 LTLEKTSSNAVLVKWKEPVGSIFT--------EYSIRYRTEEDKTWVRLPNVGTSLEAEV 336
+ S++ + P S T Y I + ++ T + V
Sbjct: 315 FNIRSL-SDSFHIYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERKIIEKKTDV--TV 371
Query: 337 TDMVPGEKCMIQV 349
++ P ++
Sbjct: 372 PNLKPLTVYCVKA 384
Score = 41.5 bits (96), Expect = 0.002
Identities = 18/135 (13%), Positives = 42/135 (31%), Gaps = 31/135 (22%)
Query: 166 VLESLLPGRKYSINVQAVSNGMES--------------PSFPIIEDLRPIEFGLNISWK- 210
+++ Y + VQA S P + ++R + +I
Sbjct: 271 FPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSDSFHIYIGA 330
Query: 211 -------SDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAIS 263
+ +E+I+ N + E ++ + + + NL P Y ++ A +
Sbjct: 331 PKQSGNTPVIQDYPLIYEIIFWENTSNAE--RKIIEKKTDVTVPNLKPLTVYCVKARAHT 388
Query: 264 -------HGLRSEPH 271
+ S+
Sbjct: 389 MDEKLNKSSVFSDAV 403
Score = 29.6 bits (65), Expect = 6.8
Identities = 6/30 (20%), Positives = 14/30 (46%)
Query: 157 QMFVDKTEYVLESLLPGRKYSINVQAVSNG 186
++ KT+ + +L P Y + +A +
Sbjct: 361 KIIEKKTDVTVPNLKPLTVYCVKARAHTMD 390
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 68.7 bits (167), Expect = 1e-12
Identities = 27/155 (17%), Positives = 57/155 (36%), Gaps = 11/155 (7%)
Query: 205 LNISWKSDVNSRQDNFEV--IYNRNDTITEDPITVVTTDS------KLLLENLYPGAGYS 256
+N +W+S + N + Y +D + +L + ++ +
Sbjct: 53 MNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFV 112
Query: 257 IQVFAISHGLRSEPH--DYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRY 314
+Q+ R V P P NLTL K S + + + W + E+ ++Y
Sbjct: 113 VQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNHCLEHLVQY 172
Query: 315 RTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQV 349
RT+ D +W +V + + + ++ +V
Sbjct: 173 RTDWDHSWTEQ-SVDYRHKFSLPSVDGQKRYTFRV 206
Score = 50.2 bits (119), Expect = 1e-06
Identities = 14/111 (12%), Positives = 34/111 (30%), Gaps = 7/111 (6%)
Query: 525 TFNNLTPGKLYNFTVWTVADGVLSTP----IQRHDRLYPEPITRINATEITDTSVSLTWD 580
F V ++ + + P + +++++ + L W+
Sbjct: 99 QLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWN 158
Query: 581 SPRGEYN-AFEVQY--LNTEGFLIQNLTLHTSIVIGDLKPHRNYTFTVIVR 628
+ + VQY + Q++ + + + YTF V R
Sbjct: 159 NRFLNHCLEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSR 209
Score = 43.3 bits (101), Expect = 2e-04
Identities = 20/194 (10%), Positives = 58/194 (29%), Gaps = 12/194 (6%)
Query: 77 GPEPLPVLDLTAVMDDKTGDLFISWKPDNASYQDMYKISIKSILLEEEHQKQFLMGFLGD 136
LP+ ++ + + + +W+ + + + + ++
Sbjct: 34 SVSTLPLPEVQCFVFNVE-YMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQK-------- 84
Query: 137 CDNGSKISYVEIE-TLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESPSFPII 195
C + + L ++ + + P R+ + ++ + + +
Sbjct: 85 CSHYLFSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAP-ENL 143
Query: 196 EDLRPIEFGLNISWKSDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGY 255
+ E L ++W + + V Y R D V K L ++ Y
Sbjct: 144 TLHKLSESQLELNWNNRFLNHCLEHLVQY-RTDWDHSWTEQSVDYRHKFSLPSVDGQKRY 202
Query: 256 SIQVFAISHGLRSE 269
+ +V + + L
Sbjct: 203 TFRVRSRFNPLCGS 216
Score = 30.9 bits (69), Expect = 2.0
Identities = 18/183 (9%), Positives = 48/183 (26%), Gaps = 24/183 (13%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYS--IRYRTEEDKTWVRLPNVGTSLEAEV 336
P + + + W+ T + Y+ ++ + + S E
Sbjct: 37 TLPLPEVQCFVFNVEYMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITS 96
Query: 337 TDMVPGEKCM------IQVNSVSYSVESAHP-LQINHTISPNPATYVAAL-VDASNVTL- 387
+ ++ +Q+ A L++ + + P + + S + L
Sbjct: 97 GCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELN 156
Query: 388 -EFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQF 446
+E+ + T + D + + +Y F
Sbjct: 157 WNNRFLNHCLEHLVQYRTDWDHSWTEQSV------------DYRHKFSLPSVDGQKRYTF 204
Query: 447 TIR 449
+R
Sbjct: 205 RVR 207
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 67.1 bits (163), Expect = 1e-12
Identities = 27/155 (17%), Positives = 56/155 (36%), Gaps = 11/155 (7%)
Query: 205 LNISWKSDVNSRQDN--FEVIYNRNDTITEDPITVVTTDS------KLLLENLYPGAGYS 256
+N +W+S + N Y +D + +L + ++ +
Sbjct: 15 MNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGCQLQKKEIHLYQTFV 74
Query: 257 IQVFAISHGLRSEPH--DYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRY 314
+Q+ R V P P NLTL K S + + + W + E+ ++Y
Sbjct: 75 VQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWNNRFLNHCLEHLVQY 134
Query: 315 RTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQV 349
RT+ D +W +V + + + ++ +V
Sbjct: 135 RTDWDHSWTEQ-SVDYRHKFSLPSVDGQKRYTFRV 168
Score = 49.4 bits (117), Expect = 1e-06
Identities = 14/111 (12%), Positives = 34/111 (30%), Gaps = 7/111 (6%)
Query: 525 TFNNLTPGKLYNFTVWTVADGVLSTP----IQRHDRLYPEPITRINATEITDTSVSLTWD 580
F V ++ + + P + +++++ + L W+
Sbjct: 61 QLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNWN 120
Query: 581 SPRGEYN-AFEVQY--LNTEGFLIQNLTLHTSIVIGDLKPHRNYTFTVIVR 628
+ + VQY + Q++ + + + YTF V R
Sbjct: 121 NRFLNHCLEHLVQYRTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVRSR 171
Score = 39.0 bits (90), Expect = 0.005
Identities = 19/189 (10%), Positives = 57/189 (30%), Gaps = 12/189 (6%)
Query: 82 PVLDLTAVMDDKTGDLFISWKPDNASYQDMYKISIKSILLEEEHQKQFLMGFLGDCDNGS 141
P+ ++ + + + +W+ + + + + ++ C +
Sbjct: 1 PLPEVQCFVFNVE-YMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQK--------CSHYL 51
Query: 142 KISYVEIE-TLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESPSFPIIEDLRP 200
+ L ++ + + P R+ + ++ + + + +
Sbjct: 52 FSEEITSGCQLQKKEIHLYQTFVVQLQDPREPRRQATQMLKLQNLVIPWAP-ENLTLHKL 110
Query: 201 IEFGLNISWKSDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVF 260
E L ++W + + V Y R D V K L ++ Y+ +V
Sbjct: 111 SESQLELNWNNRFLNHCLEHLVQY-RTDWDHSWTEQSVDYRHKFSLPSVDGQKRYTFRVR 169
Query: 261 AISHGLRSE 269
+ + L
Sbjct: 170 SRFNPLCGS 178
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 63.6 bits (155), Expect = 3e-12
Identities = 24/97 (24%), Positives = 37/97 (38%), Gaps = 7/97 (7%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEGFLIQNLT--LHTSIVIGDLK 616
P+ T++ A +T+ L W P+ + +++Q +Q T + DL
Sbjct: 8 PDGPTQLRALNLTEGFAVLHWKPPQNPVDTYDIQVTAPGAPPLQAETPGSAVDYPLHDLV 67
Query: 617 PHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLP 653
H NYT TV G + P S F T P
Sbjct: 68 LHTNYTATVRGLRGPNLTS-----PASITFTTGLEAP 99
Score = 58.2 bits (141), Expect = 2e-10
Identities = 20/114 (17%), Positives = 41/114 (35%), Gaps = 3/114 (2%)
Query: 463 SARTMPLIESEVLVVNNQQSTDSVTLRYTPQNSNHFDFYRFTLSEPDIPVIEKAANDTDR 522
S + P +++ +N + L + P + D Y ++ P P ++ +
Sbjct: 3 SGSSGPDGPTQLRALN--LTEGFAVLHWKPPQNP-VDTYDIQVTAPGAPPLQAETPGSAV 59
Query: 523 KVTFNNLTPGKLYNFTVWTVADGVLSTPIQRHDRLYPEPITRINATEITDTSVS 576
++L Y TV + L++P E + A E+T + S
Sbjct: 60 DYPLHDLVLHTNYTATVRGLRGPNLTSPASITFTTGLEAPRDLEAKEVTPSGPS 113
Score = 55.9 bits (135), Expect = 1e-09
Identities = 19/108 (17%), Positives = 35/108 (32%), Gaps = 7/108 (6%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTD 338
P PT L + ++ WK P + Y I+ G++++ + D
Sbjct: 8 PDGPTQLRALNLTEGFAVLHWKPPQNPV-DTYDIQVTAPGAPPLQAETP-GSAVDYPLHD 65
Query: 339 MVPGEKCMIQVNSVSYSVESAHPLQINHTISPNPATYVAALVDASNVT 386
+V V + ++ P I T ++A VT
Sbjct: 66 LVLHTNYTATVRGLRGPNLTS-PASITFTTGLEAPRD----LEAKEVT 108
Score = 40.9 bits (96), Expect = 2e-04
Identities = 10/91 (10%), Positives = 26/91 (28%), Gaps = 2/91 (2%)
Query: 205 LNISWKSDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAISH 264
+ WK + D +++ + L +L Y+ V +
Sbjct: 24 AVLHWKP-PQNPVDTYDIQVTAPGA-PPLQAETPGSAVDYPLHDLVLHTNYTATVRGLRG 81
Query: 265 GLRSEPHDYFQAVYPKPPTNLTLEKTSSNAV 295
+ P + P +L ++ + +
Sbjct: 82 PNLTSPASITFTTGLEAPRDLEAKEVTPSGP 112
Score = 39.7 bits (93), Expect = 7e-04
Identities = 10/89 (11%), Positives = 23/89 (25%), Gaps = 11/89 (12%)
Query: 380 VDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLT 439
+ L + P+ ++ Y + G + + L
Sbjct: 19 LTEGFAVLHWKPPQNPVDTYDIQVTAPGAP-PLQAETPGSAV----------DYPLHDLV 67
Query: 440 PGVKYQFTIRTVSYNLESGVTSLSARTMP 468
Y T+R + + S++ T
Sbjct: 68 LHTNYTATVRGLRGPNLTSPASITFTTGL 96
Score = 39.0 bits (91), Expect = 0.001
Identities = 7/51 (13%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 146 VEIETLNGDSNQMFV--DKTEYVLESLLPGRKYSINVQAVSNGMESPSFPI 194
+++ Q +Y L L+ Y+ V+ + + I
Sbjct: 40 IQVTAPGAPPLQAETPGSAVDYPLHDLVLHTNYTATVRGLRGPNLTSPASI 90
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 69.8 bits (170), Expect = 3e-12
Identities = 29/191 (15%), Positives = 57/191 (29%), Gaps = 23/191 (12%)
Query: 172 PGRKYSINVQAVSNGMESPSFPIIEDLRPIEFGLNISWK--SDVNSRQD-NFEVIYNR-- 226
R S + + + + W D R+D + V +
Sbjct: 318 FFRAPQDPASMPCTRPPSAPHYLTAVGMGAK--VELRWTPPQDSGGREDIVYSVTCEQCW 375
Query: 227 ---------NDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFA---ISHGLRSEPHDYF 274
++ T + + + +L P Y+ V A +S + S
Sbjct: 376 PESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTA 435
Query: 275 -QAVYPKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKTWVRLPNVGTS 331
++ P + LE S+ ++ V W P S +Y + YR + D +
Sbjct: 436 SVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKGDSNSYNVRRT-EG 494
Query: 332 LEAEVTDMVPG 342
+ D+ P
Sbjct: 495 FSVTLDDLAPD 505
Score = 61.3 bits (148), Expect = 1e-09
Identities = 47/275 (17%), Positives = 86/275 (31%), Gaps = 23/275 (8%)
Query: 298 KWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQ-----VNSV 352
+W P+G + + + + E+ + +
Sbjct: 257 EWLVPIGQCLCQAGYEKVEDACQACSPGFFKFEASESPCLECPEHTLPSPEGATSCECEE 316
Query: 353 SYSVESAHPLQINHTISPNPATYVAALVDASNVTLEFPRPE----GRIEYYLVTWRGIGP 408
+ P + T P+ Y+ A+ + V L + P+ Y VT P
Sbjct: 317 GFFRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWP 376
Query: 409 EATSTELFTKNVTNDPEDKD-KHVHILIDQLTPGVKYQFTIRTVSYNLES-GVTSLSART 466
E+ +V + + L P + Y FT+ + N S VTS S RT
Sbjct: 377 ESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVE--ARNGVSGLVTSRSFRT 434
Query: 467 MPLIESEVLVVNNQ---QSTDSVTLRYTP---QNSNHFDFYRFTLSEPDIPVIEKAANDT 520
+ ++ + +ST S+++ ++ Q S + Y T +
Sbjct: 435 ASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWK-YEVTYRKKGDSNSYNVRRTE 493
Query: 521 DRKVTFNNLTPGKLYNFTV--WTVA-DGVLSTPIQ 552
VT ++L P Y V T G S +
Sbjct: 494 GFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVHE 528
Score = 59.4 bits (143), Expect = 4e-09
Identities = 29/140 (20%), Positives = 46/140 (32%), Gaps = 9/140 (6%)
Query: 499 DFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWT---VADGVLSTPIQRHD 555
+ E + E T VT ++L P Y FTV V+ V S +
Sbjct: 377 ESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTAS 436
Query: 556 -RLYPEPITRINATEITDTSVSLTWDSPR---GEYNAFEVQY--LNTEGFLIQNLTLHTS 609
+ ++ + TS+S++W P +EV Y T S
Sbjct: 437 VSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKGDSNSYNVRRTEGFS 496
Query: 610 IVIGDLKPHRNYTFTVIVRS 629
+ + DL P Y V +
Sbjct: 497 VTLDDLAPDTTYLVQVQALT 516
Score = 49.4 bits (117), Expect = 6e-06
Identities = 30/181 (16%), Positives = 47/181 (25%), Gaps = 39/181 (21%)
Query: 545 GVLSTPIQRHDRLYPEPITRINATEITDTSVSLTWDSPRGEYNA----FEVQY------- 593
P V L W P+ + V
Sbjct: 319 FRAPQDPASMPCTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPES 378
Query: 594 -------LNTEGFLIQNLTLHTSIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIF 646
+ + TS+ + DL+PH NYTFTV R+G S L S
Sbjct: 379 GECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGV--SGLVTSRSFRTA- 435
Query: 647 QTHESLPGKMDRTIVDTWHFVRFFQAEKFHPIDVQPGDITFEWSLPGSEQNGVIRKFTIS 706
+ + K ++ WS+P Q + K+ ++
Sbjct: 436 -SVSINQT----------------EPPKVRLEGRSTTSLSVSWSIP-PPQQSRVWKYEVT 477
Query: 707 Y 707
Y
Sbjct: 478 Y 478
Score = 44.4 bits (104), Expect = 2e-04
Identities = 32/155 (20%), Positives = 52/155 (33%), Gaps = 21/155 (13%)
Query: 137 CDNGSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQA---VSNGMES---- 189
C S ++ + +T + L P Y+ V+A VS + S
Sbjct: 374 CWPESGECGPCEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFR 433
Query: 190 -------PSFPIIEDLRPI-EFGLNISWK--SDVNSRQDNFEVIYNRNDTITEDPITVVT 239
+ P L L++SW SR +EV Y + T
Sbjct: 434 TASVSINQTEPPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKGDSNS-YNVRRT 492
Query: 240 TDSKLLLENLYPGAGYSIQVFAIS---HGLRSEPH 271
+ L++L P Y +QV A++ G S+ H
Sbjct: 493 EGFSVTLDDLAPDTTYLVQVQALTQEGQGAGSKVH 527
Score = 31.3 bits (70), Expect = 2.2
Identities = 9/53 (16%), Positives = 17/53 (32%), Gaps = 5/53 (9%)
Query: 136 DCDNGSKISYVEIETLNGDSNQMF----VDKTEYVLESLLPGRKYSINVQAVS 184
Y E+ + + + L+ L P Y + VQA++
Sbjct: 465 PPQQSRVWKY-EVTYRKKGDSNSYNVRRTEGFSVTLDDLAPDTTYLVQVQALT 516
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 62.9 bits (153), Expect = 3e-12
Identities = 29/96 (30%), Positives = 47/96 (48%), Gaps = 10/96 (10%)
Query: 557 LYPEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEGF-LIQNLTLH---TSIVI 612
+ P P + +E+T+ S+ L+W +P +++F +QY +E NLT+ S +
Sbjct: 1 MLPAP-KNLVVSEVTEDSLRLSWTAPDAAFDSFMIQYQESEKVGEAINLTVPGSERSYDL 59
Query: 613 GDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQT 648
LKP YT ++ G RS P+SA F T
Sbjct: 60 TGLKPGTEYTVSIYGVKGG-----HRSNPLSAEFTT 90
Score = 47.8 bits (114), Expect = 6e-07
Identities = 18/96 (18%), Positives = 38/96 (39%), Gaps = 3/96 (3%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNV-GTSLEAEVTDM 339
P NL + + + +++ + W P + + I+Y+ E V G+ ++T +
Sbjct: 4 APKNLVVSEVTEDSLRLSWTAPDAAF-DSFMIQYQESEKVGEAINLTVPGSERSYDLTGL 62
Query: 340 VPGEKCMIQVNSVSYSVESAHPLQINHTISPNPATY 375
PG + + + V S PL T + +
Sbjct: 63 KPGTEYTVSIYGVKGGHRSN-PLSAEFTTGGHHHHH 97
Score = 46.7 bits (111), Expect = 2e-06
Identities = 16/100 (16%), Positives = 31/100 (31%), Gaps = 9/100 (9%)
Query: 370 PNPATYVAALVDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDK 429
P P V + V ++ L + P+ + +++ ++ + L
Sbjct: 3 PAPKNLVVSEVTEDSLRLSWTAPDAAFDSFMIQYQESEKVGEAINLTVPGSER------- 55
Query: 430 HVHILIDQLTPGVKYQFTIRTVSYNLESGVTSLSARTMPL 469
+ L PG +Y +I V S S T
Sbjct: 56 --SYDLTGLKPGTEYTVSIYGVKGGHRSNPLSAEFTTGGH 93
Score = 41.7 bits (98), Expect = 9e-05
Identities = 20/79 (25%), Positives = 34/79 (43%), Gaps = 4/79 (5%)
Query: 475 LVVNNQQSTDSVTLRYTPQNSNHFDFYRFTLSEPDI--PVIEKAANDTDRKVTFNNLTPG 532
LVV+ + DS+ L +T ++ FD + E + I ++R L PG
Sbjct: 8 LVVSEV-TEDSLRLSWTAPDAA-FDSFMIQYQESEKVGEAINLTVPGSERSYDLTGLKPG 65
Query: 533 KLYNFTVWTVADGVLSTPI 551
Y +++ V G S P+
Sbjct: 66 TEYTVSIYGVKGGHRSNPL 84
Score = 35.5 bits (82), Expect = 0.012
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 140 GSKISYVEIETLNGDSNQMFV--DKTEYVLESLLPGRKYSINVQAVSNGMESP 190
I Y E E G++ + V + Y L L PG +Y++++ V G S
Sbjct: 31 SFMIQYQESEK-VGEAINLTVPGSERSYDLTGLKPGTEYTVSIYGVKGGHRSN 82
Score = 35.5 bits (82), Expect = 0.014
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 205 LNISWKSDVNSRQDNFEVIYNRNDTITED-PITVVTTDSKLLLENLYPGAGYSIQVFAIS 263
L +SW + ++ D+F + Y ++ + E +TV ++ L L PG Y++ ++ +
Sbjct: 18 LRLSWTA-PDAAFDSFMIQYQESEKVGEAINLTVPGSERSYDLTGLKPGTEYTVSIYGVK 76
Query: 264 HGLRSEP 270
G RS P
Sbjct: 77 GGHRSNP 83
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 66.0 bits (161), Expect = 3e-12
Identities = 34/176 (19%), Positives = 54/176 (30%), Gaps = 21/176 (11%)
Query: 205 LNISWKSDVNSRQDN------FEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQ 258
+ I+W + + + V + N T L+ L P Y
Sbjct: 21 IRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFS 80
Query: 259 VFA---ISHGLRSEPHDY--FQAVYPKPPTNLTLEKT--SSNAVLVKWKEPV--GSIFTE 309
V S F+ V PP ++T+ ++V W+ P T
Sbjct: 81 VMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITG 140
Query: 310 YSIRYRT---EEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQV---NSVSYSVESA 359
Y I Y T E WV P VG L ++ ++ ++ NS S
Sbjct: 141 YIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSE 196
Score = 59.4 bits (144), Expect = 6e-10
Identities = 31/159 (19%), Positives = 55/159 (34%), Gaps = 28/159 (17%)
Query: 559 PEPITRINATEITDTSVSLTWDSP-------RGEYNAFEVQY---LNTEGFLIQNLTLHT 608
P + A+ ++ ++ +TW + + V++ +
Sbjct: 5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 64
Query: 609 SIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVR 668
S ++ LKP+ Y F+V+V G SS S+ T E +P + +
Sbjct: 65 SYLVTGLKPNTLYEFSVMVTKGRRSST--WSMTA--HGTTFELVPTSPPKDV-------- 112
Query: 669 FFQAEKFHPIDVQPGDITFEWSLPGSEQNGVIRKFTISY 707
+ +P I W P SE NG I + I Y
Sbjct: 113 -----TVVSKEGKPKTIIVNWQPP-SEANGKITGYIIYY 145
Score = 56.0 bits (135), Expect = 1e-08
Identities = 30/189 (15%), Positives = 56/189 (29%), Gaps = 27/189 (14%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEP------VGSIFTEYSIRYRTEEDKTWVRLPNVGTSL 332
PP + S + + + W + + Y++R++T T+L
Sbjct: 5 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 64
Query: 333 EAEVTDMVPGEKCMIQV---NSVSYSVESAHPLQINHT------ISPNPATYVAALVDAS 383
VT + P V S S T P T V+
Sbjct: 65 SYLVTGLKPNTLYEFSVMVTKGRRSSTWS--MTAHGTTFELVPTSPPKDVTVVSKEGKPK 122
Query: 384 NVTL---EFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTP 440
+ + G+I Y++ + + E+ + ++ H I +LT
Sbjct: 123 TIIVNWQPPSEANGKITGYIIYYS----TDVNAEIHDWVIEPVVGNRLTHQ---IQELTL 175
Query: 441 GVKYQFTIR 449
Y F I+
Sbjct: 176 DTPYYFKIQ 184
Score = 49.4 bits (118), Expect = 2e-06
Identities = 20/155 (12%), Positives = 43/155 (27%), Gaps = 26/155 (16%)
Query: 142 KISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESP-SFPII----- 195
+ + N Y++ L P Y +V S S
Sbjct: 43 TVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFE 102
Query: 196 -------EDLRPIEFGLN-----ISWK--SDVNSRQDNFEVIYNRNDTITEDPITVVTTD 241
+D+ + ++W+ S+ N + + + Y+ + +
Sbjct: 103 LVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVV 162
Query: 242 SKLL---LENLYPGAGYSIQVFAIS---HGLRSEP 270
L ++ L Y ++ A + G SE
Sbjct: 163 GNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEA 197
Score = 48.6 bits (116), Expect = 3e-06
Identities = 27/174 (15%), Positives = 51/174 (29%), Gaps = 26/174 (14%)
Query: 394 GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSY 453
YY V W+ P T + L+ L P Y+F++
Sbjct: 37 TDSRYYTVRWKTNIPANTKYKNANATTL----------SYLVTGLKPNTLYEFSVMVTK- 85
Query: 454 NLESGVTS--LSARTMPLI----ESEVLVVNNQQSTDSVTLRYTPQNSNHFD------FY 501
S S T L+ +V VV+ + ++ + + P + + +Y
Sbjct: 86 GRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYY 145
Query: 502 RFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTV--WTVA-DGVLSTPIQ 552
++ + + LT Y F + G +S +Q
Sbjct: 146 STDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQARNSKGMGPMSEAVQ 199
Score = 47.5 bits (113), Expect = 7e-06
Identities = 20/124 (16%), Positives = 34/124 (27%), Gaps = 16/124 (12%)
Query: 518 NDTDRKVTFNNLTPGKLYNFTVWTV---ADGVLSTPIQRHDR----LYPEPITRINATEI 570
N T L P LY F+V S P + + E
Sbjct: 60 NATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEG 119
Query: 571 TDTSVSLTWDSPR---GEYNAFEVQYLNTEGFLIQNLTLH------TSIVIGDLKPHRNY 621
++ + W P G+ + + Y I + + + I +L Y
Sbjct: 120 KPKTIIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPY 179
Query: 622 TFTV 625
F +
Sbjct: 180 YFKI 183
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 62.8 bits (153), Expect = 4e-12
Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 8/93 (8%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEGFLIQNLTLH---TSIVIGDL 615
P + ++++ + + W+ V Y+++EG TS ++G L
Sbjct: 8 LAPPRHLGFSDVSHDAARVFWEGAPRPVRLVRVTYVSSEGGHSGQTEAPGNATSAMLGPL 67
Query: 616 KPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQT 648
YT V S ++ T
Sbjct: 68 SSSTTYTVRVTCLYPGG-----GSSTLTGRVTT 95
Score = 55.5 bits (134), Expect = 2e-09
Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 2/95 (2%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTD 338
PP +L S +A V W+ + + Y + E + G + A +
Sbjct: 8 LAPPRHLGFSDVSHDAARVFWEGAPRPV-RLVRVTYVSSEGGHSGQTEAPGNATSAMLGP 66
Query: 339 MVPGEKCMIQVNSVSYSVESAHPLQINHTISPNPA 373
+ ++V + S+ L T P+
Sbjct: 67 LSSSTTYTVRVTCLYPGGGSS-TLTGRVTTKKAPS 100
Score = 39.3 bits (92), Expect = 8e-04
Identities = 9/90 (10%), Positives = 20/90 (22%), Gaps = 10/90 (11%)
Query: 380 VDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLT 439
V + + + VT+ + N T ++ L+
Sbjct: 19 VSHDAARVFWEGAPRPVRLVRVTYVSSEGGHSGQTEAPGNAT----------SAMLGPLS 68
Query: 440 PGVKYQFTIRTVSYNLESGVTSLSARTMPL 469
Y + + S + T
Sbjct: 69 SSTTYTVRVTCLYPGGGSSTLTGRVTTKKA 98
Score = 38.6 bits (90), Expect = 0.001
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 4/51 (7%)
Query: 142 KISYVEIETLNGDSNQMFVD--KTEYVLESLLPGRKYSINVQAVSNGMESP 190
+++YV E G S Q T +L L Y++ V + G S
Sbjct: 39 RVTYVSSE--GGHSGQTEAPGNATSAMLGPLSSSTTYTVRVTCLYPGGGSS 87
Score = 38.2 bits (89), Expect = 0.002
Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 2/82 (2%)
Query: 205 LNISWKSDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAISH 264
+ W+ V Y ++ + +L L Y+++V +
Sbjct: 24 ARVFWEG-APRPVRLVRVTYVSSEGGHSGQTEAPGNATSAMLGPLSSSTTYTVRVTCLYP 82
Query: 265 GLRSEPHDYFQAVYPKP-PTNL 285
G S P P++
Sbjct: 83 GGGSSTLTGRVTTKKAPSPSSG 104
Score = 32.8 bits (75), Expect = 0.13
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 7/92 (7%)
Query: 463 SARTMPLIESEVLVVNNQQSTDSVTLRYTPQNSNHFDFYRFTLSEPD---IPVIEKAAND 519
S+ + L L ++ S D+ + + R T + E N
Sbjct: 2 SSGSSGLAPPRHLGFSDV-SHDAARVFWEGAPRP-VRLVRVTYVSSEGGHSGQTEAPGNA 59
Query: 520 TDRKVTFNNLTPGKLYNFTVWTVADGVLSTPI 551
T L+ Y V + G S+ +
Sbjct: 60 T--SAMLGPLSSSTTYTVRVTCLYPGGGSSTL 89
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 62.8 bits (153), Expect = 4e-12
Identities = 25/101 (24%), Positives = 41/101 (40%), Gaps = 9/101 (8%)
Query: 557 LYPEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEGF-LIQNLTLH---TSIVI 612
+ + ++I ++TDT+ +TW P + FE+ Y + + L I
Sbjct: 1 MRLDAPSQIEVKDVTDTTALITWMPPSQPVDGFELTYGIKDVPGDRTTIDLTEDENQYSI 60
Query: 613 GDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLP 653
G+LKP Y ++I R G SS P F T +
Sbjct: 61 GNLKPDTEYEVSLISRRGDMSSN-----PAKETFTTGLAAA 96
Score = 45.1 bits (107), Expect = 7e-06
Identities = 8/81 (9%), Positives = 29/81 (35%), Gaps = 2/81 (2%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNV-GTSLEAEVT 337
P+ + ++ + L+ W P + + + Y ++ ++ + +
Sbjct: 3 LDAPSQIEVKDVTDTTALITWMPPSQPV-DGFELTYGIKDVPGDRTTIDLTEDENQYSIG 61
Query: 338 DMVPGEKCMIQVNSVSYSVES 358
++ P + + + S + S
Sbjct: 62 NLKPDTEYEVSLISRRGDMSS 82
Score = 41.2 bits (97), Expect = 2e-04
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 482 STDSVTLRYTPQNSNHFDFYRFTLSEPDIP--VIEKAANDTDRKVTFNNLTPGKLYNFTV 539
+ + + + P + D + T D+P + + + + NL P Y ++
Sbjct: 15 TDTTALITWMPPSQP-VDGFELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSL 73
Query: 540 WTVADGVLSTPI 551
+ + S P
Sbjct: 74 ISRRGDMSSNPA 85
Score = 39.3 bits (92), Expect = 7e-04
Identities = 12/89 (13%), Positives = 33/89 (37%), Gaps = 9/89 (10%)
Query: 380 VDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLT 439
V + + + P ++ + +T+ T + ED++++ I L
Sbjct: 14 VTDTTALITWMPPSQPVDGFELTYGIKDVPGDRTTIDL------TEDENQYS---IGNLK 64
Query: 440 PGVKYQFTIRTVSYNLESGVTSLSARTMP 468
P +Y+ ++ + ++ S + T
Sbjct: 65 PDTEYEVSLISRRGDMSSNPAKETFTTGL 93
Score = 37.8 bits (88), Expect = 0.002
Identities = 11/52 (21%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 142 KISYVEIETLNGDSNQMFV--DKTEYVLESLLPGRKYSINVQAVSNGMESPS 191
+++Y I+ + GD + + D+ +Y + +L P +Y +++ + M S
Sbjct: 34 ELTY-GIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGDMSSNP 84
Score = 36.6 bits (85), Expect = 0.007
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 2/65 (3%)
Query: 207 ISWKSDVNSRQDNFEVIYNRNDTI-TEDPITVVTTDSKLLLENLYPGAGYSIQVFAISHG 265
I+W + D FE+ Y D I + +++ + NL P Y + + +
Sbjct: 21 ITWMP-PSQPVDGFELTYGIKDVPGDRTTIDLTEDENQYSIGNLKPDTEYEVSLISRRGD 79
Query: 266 LRSEP 270
+ S P
Sbjct: 80 MSSNP 84
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 62.0 bits (151), Expect = 6e-12
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 560 EPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEG----FLIQNLTLHTSIVIGDL 615
+P I T IT T+ +TW P V + + + TS+ + +L
Sbjct: 3 QPPFNIKVTNITLTTAVVTWQPPILPIEGILVTFGRKNDPSDETTVDLTSSITSLTLTNL 62
Query: 616 KPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQT 648
+P+ Y ++ R+G + S PVS F T
Sbjct: 63 EPNTTYEIRIVARNGQ-----QYSPPVSTTFTT 90
Score = 47.0 bits (112), Expect = 1e-06
Identities = 11/74 (14%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNV-GTSLEAEVTDM 339
PP N+ + + +V W+ P+ I + + + D + ++ + +T++
Sbjct: 4 PPFNIKVTNITLTTAVVTWQPPILPI-EGILVTFGRKNDPSDETTVDLTSSITSLTLTNL 62
Query: 340 VPGEKCMIQVNSVS 353
P I++ + +
Sbjct: 63 EPNTTYEIRIVARN 76
Score = 37.8 bits (88), Expect = 0.003
Identities = 18/91 (19%), Positives = 31/91 (34%), Gaps = 11/91 (12%)
Query: 380 VDASNVTLEFPRPEGRIEYYLVTWRGI-GPEATSTELFTKNVTNDPEDKDKHVHILIDQL 438
+ + + + P IE LVT+ P +T T ++T + + L
Sbjct: 13 ITLTTAVVTWQPPILPIEGILVTFGRKNDPSDETTVDLTSSIT----------SLTLTNL 62
Query: 439 TPGVKYQFTIRTVSYNLESGVTSLSARTMPL 469
P Y+ I + S S + T L
Sbjct: 63 EPNTTYEIRIVARNGQQYSPPVSTTFTTGSL 93
Score = 36.2 bits (84), Expect = 0.008
Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 207 ISWKSDVNSRQDNFEVIYNR-NDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAISHG 265
++W+ + V + R ND E + + ++ + L L NL P Y I++ A +
Sbjct: 20 VTWQP-PILPIEGILVTFGRKNDPSDETTVDLTSSITSLTLTNLEPNTTYEIRIVARNGQ 78
Query: 266 LRSEP 270
S P
Sbjct: 79 QYSPP 83
Score = 35.1 bits (81), Expect = 0.020
Identities = 13/50 (26%), Positives = 18/50 (36%), Gaps = 4/50 (8%)
Query: 146 VEIETLNGDSNQMFV----DKTEYVLESLLPGRKYSINVQAVSNGMESPS 191
V N S++ V T L +L P Y I + A + SP
Sbjct: 34 VTFGRKNDPSDETTVDLTSSITSLTLTNLEPNTTYEIRIVARNGQQYSPP 83
Score = 31.2 bits (71), Expect = 0.42
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 3/72 (4%)
Query: 482 STDSVTLRYTPQNSNHFDFYRFTLSEPDIPVIEKAAND--TDRKVTFNNLTPGKLYNFTV 539
+ + + + P + T + P E + + +T NL P Y +
Sbjct: 14 TLTTAVVTWQPPILP-IEGILVTFGRKNDPSDETTVDLTSSITSLTLTNLEPNTTYEIRI 72
Query: 540 WTVADGVLSTPI 551
S P+
Sbjct: 73 VARNGQQYSPPV 84
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 62.2 bits (151), Expect = 9e-12
Identities = 26/106 (24%), Positives = 43/106 (40%), Gaps = 8/106 (7%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEG-FLIQNLTL---HTSIVIGD 614
+ + T TS+ ++WDS RG Y + + Y T G +Q T+ + I
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDSGRGSYQYYRITYGETGGNSPVQEFTVPGPVHTATISG 63
Query: 615 LKPHRNYTFTVI----VRSGTESSVLRRSLPVSAIFQTHESLPGKM 656
LKP +YT TV + + P+S ++T P +
Sbjct: 64 LKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKPSQH 109
Score = 48.8 bits (116), Expect = 5e-07
Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 5/97 (5%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNV-GTSLEAEVT 337
P +L + + ++L+ W GS Y I Y + V+ V G A ++
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDSGRGSY-QYYRITYGETGGNSPVQEFTVPGPVHTATIS 62
Query: 338 DMVPGEKCMIQVNSVSYSVESAHPLQINHTISPNPAT 374
+ PG I V +V+ + HT +P +
Sbjct: 63 GLKPGVDYTITVYAVT---DHKPHADGPHTYHESPIS 96
Score = 42.2 bits (99), Expect = 9e-05
Identities = 15/90 (16%), Positives = 30/90 (33%), Gaps = 9/90 (10%)
Query: 380 VDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLT 439
+++ + + G +YY +T+ G + E + I L
Sbjct: 15 ATPTSLLISWDSGRGSYQYYRITYGETGGNSPVQEFTVPGPVH---------TATISGLK 65
Query: 440 PGVKYQFTIRTVSYNLESGVTSLSARTMPL 469
PGV Y T+ V+ + + P+
Sbjct: 66 PGVDYTITVYAVTDHKPHADGPHTYHESPI 95
Score = 37.6 bits (87), Expect = 0.004
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 142 KISYVEIETLNGDSNQMFV--DKTEYVLESLLPGRKYSINVQAVSNGMESPSFPIIEDLR 199
+I+Y E N + V + L PG Y+I V AV++ P
Sbjct: 35 RITYGETGG-NSPVQEFTVPGPVHTATISGLKPGVDYTITVYAVTDHKPHADGPHTYHES 93
Query: 200 PI 201
PI
Sbjct: 94 PI 95
Score = 36.0 bits (83), Expect = 0.012
Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 6/98 (6%)
Query: 475 LVVNNQQSTDSVTLRYTPQNSNHFDFYR--FTLSEPDIPVIEKAANDTDRKVTFNNLTPG 532
L V + S+ + + + + +YR + + + PV E T + L PG
Sbjct: 10 LEVVAA-TPTSLLISWDSGRGS-YQYYRITYGETGGNSPVQEFTVPGPVHTATISGLKPG 67
Query: 533 KLYNFTVWTVADGVLSTPIQRHDRLYPEPITRINATEI 570
Y TV+ V D PI+ TEI
Sbjct: 68 VDYTITVYAVTDHKPHADGPHTYH--ESPISINYRTEI 103
Score = 34.5 bits (79), Expect = 0.047
Identities = 18/90 (20%), Positives = 26/90 (28%), Gaps = 2/90 (2%)
Query: 205 LNISWKSDVNSRQDNFEVIYNR-NDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAIS 263
L ISW S + + Y TV + L PG Y+I V+A++
Sbjct: 20 LLISWDS-GRGSYQYYRITYGETGGNSPVQEFTVPGPVHTATISGLKPGVDYTITVYAVT 78
Query: 264 HGLRSEPHDYFQAVYPKPPTNLTLEKTSSN 293
+ P T S
Sbjct: 79 DHKPHADGPHTYHESPISINYRTEIDKPSQ 108
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 60.2 bits (146), Expect = 3e-11
Identities = 22/93 (23%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEGFLIQNLTLH---TSIVIGDL 615
E + A E+T + LTW P + + + G Q + L TS + L
Sbjct: 8 LEAPRDLEAKEVTPRTALLTWTEPPVRPAGYLLSFHTPGGQ-TQEILLPGGITSHQLLGL 66
Query: 616 KPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQT 648
P +Y + G PVS F T
Sbjct: 67 FPSTSYNARLQAMWGQ-----SLLPPVSTSFTT 94
Score = 47.8 bits (114), Expect = 6e-07
Identities = 12/89 (13%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTD 338
+ P +L ++ + L+ W EP Y + + T + G ++
Sbjct: 8 LEAPRDLEAKEVTPRTALLTWTEPPVRP-AGYLLSFHT-PGGQTQEILLPGGITSHQLLG 65
Query: 339 MVPGEKCMIQVNSVSYSVESAHPLQINHT 367
+ P ++ ++ P+ + T
Sbjct: 66 LFPSTSYNARLQAMWGQSLLP-PVSTSFT 93
Score = 41.7 bits (98), Expect = 1e-04
Identities = 12/78 (15%), Positives = 18/78 (23%), Gaps = 2/78 (2%)
Query: 475 LVVNNQQSTDSVTLRYTPQNSNHFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKL 534
L + L +T Y + P E L P
Sbjct: 14 LEAKEVTPR-TALLTWTEPPVR-PAGYLLSFHTPGGQTQEILLPGGITSHQLLGLFPSTS 71
Query: 535 YNFTVWTVADGVLSTPIQ 552
YN + + L P+
Sbjct: 72 YNARLQAMWGQSLLPPVS 89
Score = 40.1 bits (94), Expect = 3e-04
Identities = 10/48 (20%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 146 VEIETLNGDSNQMFVD--KTEYVLESLLPGRKYSINVQAVSNGMESPS 191
+ T G + ++ + T + L L P Y+ +QA+ P
Sbjct: 40 LSFHTPGGQTQEILLPGGITSHQLLGLFPSTSYNARLQAMWGQSLLPP 87
Score = 38.6 bits (90), Expect = 0.001
Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 11/90 (12%)
Query: 380 VDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLT 439
V L + P R YL+++ G + T+ + + L
Sbjct: 19 VTPRTALLTWTEPPVRPAGYLLSFHTPGGQ-------TQEILLPGGIT----SHQLLGLF 67
Query: 440 PGVKYQFTIRTVSYNLESGVTSLSARTMPL 469
P Y ++ + S S T L
Sbjct: 68 PSTSYNARLQAMWGQSLLPPVSTSFTTGGL 97
Score = 37.4 bits (87), Expect = 0.003
Identities = 9/64 (14%), Positives = 22/64 (34%), Gaps = 2/64 (3%)
Query: 207 ISWKSDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAISHGL 266
++W R + + ++ I + + L L+P Y+ ++ A+
Sbjct: 26 LTWTE-PPVRPAGYLLSFHTPGG-QTQEILLPGGITSHQLLGLFPSTSYNARLQAMWGQS 83
Query: 267 RSEP 270
P
Sbjct: 84 LLPP 87
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 62.9 bits (153), Expect = 4e-11
Identities = 36/201 (17%), Positives = 66/201 (32%), Gaps = 36/201 (17%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTE-EDKTWVRL---------- 325
PPT + + S +V+++W P G + ++YR + K W
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 61
Query: 326 --PNVGTSLEAEVTDMVPGEKCMIQV---NSVSYSVESA--HPLQINHTISPNPATYVAA 378
+G S A VTD+ P ++ S + + ES + + +P
Sbjct: 62 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPEL 121
Query: 379 L----VDASNVTLEFPRPE----GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKH 430
L + V L + I Y +R P +++ E F +
Sbjct: 122 LEIEEYSETAVVLHWSLASDADEHLITGYYAYYR---PSSSAGEYFKATIEGAHAR---- 174
Query: 431 VHILIDQLTPGVKYQFTIRTV 451
I L Y+F +++
Sbjct: 175 -SFKIAPLETATMYEFKLQSF 194
Score = 57.1 bits (138), Expect = 4e-09
Identities = 23/162 (14%), Positives = 50/162 (30%), Gaps = 17/162 (10%)
Query: 215 SRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAI-SHGL--RSEPH 271
++ N++ + + + + +L P Y ++ A+ S+ S
Sbjct: 43 GKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTS 102
Query: 272 DYFQAVY------PKPPTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTW 322
F P L +E+ S AV++ W + T Y YR
Sbjct: 103 AKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGE 162
Query: 323 VRLPNV--GTSLEAEVTDMVPGEKCMIQV---NSVSYSVESA 359
+ + ++ + ++ ++ S S SA
Sbjct: 163 YFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSA 204
Score = 48.3 bits (115), Expect = 3e-06
Identities = 27/178 (15%), Positives = 49/178 (27%), Gaps = 34/178 (19%)
Query: 482 STDSVTLRYTPQNSNH-------------FDFYRFTLSEPDIPVIEKAANDTDRKVTF-- 526
S +SV LR+ ++ + + +IP + N K
Sbjct: 14 SDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTAS 73
Query: 527 -NNLTPGKLYNFTVWTV-ADGV-----LSTPIQRHDRLYPEPI---TRINATEITDTSVS 576
+L P Y F + V ++ S +P+ + E ++T+V
Sbjct: 74 VTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVV 133
Query: 577 LTWDSPRGEYNA----FEVQYLNTEG-----FLIQNLTLHTSIVIGDLKPHRNYTFTV 625
L W + Y + S I L+ Y F +
Sbjct: 134 LHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKL 191
Score = 43.6 bits (103), Expect = 1e-04
Identities = 31/177 (17%), Positives = 46/177 (25%), Gaps = 52/177 (29%)
Query: 559 PEPITRINATEITDTSVSLTWDSPR---GEYNAFEVQY----------------LNTEGF 599
P T N T ++D SV L W PR F+VQY +
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 61
Query: 600 LIQNLTLHTSIVIGDLKPHRNYTFTVI----VRSGTESSVLRRSLPVSAIFQTHESLPGK 655
L + + DLKP Y F ++ ES+ S
Sbjct: 62 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT---SAKFYLQPGAALDPMPV 118
Query: 656 MDRTIVDTWHFVRFFQAEKFHPIDVQPGD-----ITFEWSLPGSEQNGVIRKFTISY 707
P ++ + + WSL +I + Y
Sbjct: 119 ---------------------PELLEIEEYSETAVVLHWSLASDADEHLITGYYAYY 154
Score = 37.1 bits (86), Expect = 0.020
Identities = 23/187 (12%), Positives = 45/187 (24%), Gaps = 43/187 (22%)
Query: 138 DNGSKIS--YVEIETLNGDSNQMFV----------------DKTEYVLESLLPGRKYSIN 179
++G I V+ + N + L P Y
Sbjct: 27 NDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFR 86
Query: 180 VQAV-SNGMESPSFP----IIEDLRPIEFG---------------LNISWK---SDVNSR 216
+ AV SN S ++ ++ + + W
Sbjct: 87 ILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVLHWSLASDADEHL 146
Query: 217 QDNFEVIYNRNDTITE-DPITVVTTDS-KLLLENLYPGAGYSIQVFAISHGLRSEPHDYF 274
+ Y + + E T+ + + L Y ++ + S SE
Sbjct: 147 ITGYYAYYRPSSSAGEYFKATIEGAHARSFKIAPLETATMYEFKLQSFSAASASEFSALK 206
Query: 275 QAVYPKP 281
Q +P
Sbjct: 207 QGRTQRP 213
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 59.3 bits (144), Expect = 5e-11
Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 9/93 (9%)
Query: 560 EPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEGFLIQNLTLH----TSIVIGDL 615
+ + T++ S+ + W+SP+G+ + + V Y + E + + + + L
Sbjct: 3 DRPKGLAFTDVDVDSIKIAWESPQGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGL 62
Query: 616 KPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQT 648
+P YT +V+ S P+ T
Sbjct: 63 RPGSEYTVSVVALHDDM-----ESQPLIGTQST 90
Score = 57.8 bits (140), Expect = 2e-10
Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 3/88 (3%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNV-GTSLEAEVTDM 339
P L +++ + W+ P G + + Y + Y + ED P G AE+ +
Sbjct: 4 RPKGLAFTDVDVDSIKIAWESPQGQV-SRYRVTYSSPEDGIHELFPAPDGEEDTAELQGL 62
Query: 340 VPGEKCMIQVNSVSYSVESAHPLQINHT 367
PG + + V ++ +ES PL +
Sbjct: 63 RPGSEYTVSVVALHDDMESQ-PLIGTQS 89
Score = 43.6 bits (103), Expect = 2e-05
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 475 LVVNNQQSTDSVTLRYTPQNSNHFDFYRFTLSEPD--IPVIEKAANDTDRKVTFNNLTPG 532
L + S+ + + YR T S P+ I + A + + L PG
Sbjct: 8 LAFTDVDVD-SIKIAWESPQGQ-VSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPG 65
Query: 533 KLYNFTVWTVADGVLSTPI 551
Y +V + D + S P+
Sbjct: 66 SEYTVSVVALHDDMESQPL 84
Score = 43.2 bits (102), Expect = 2e-05
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
Query: 205 LNISWKSDVNSRQDNFEVIYNRNDTITEDPITVV-TTDSKLLLENLYPGAGYSIQVFAIS 263
+ I+W+S + + V Y+ + + + L+ L PG+ Y++ V A+
Sbjct: 18 IKIAWES-PQGQVSRYRVTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALH 76
Query: 264 HGLRSEP 270
+ S+P
Sbjct: 77 DDMESQP 83
Score = 41.6 bits (98), Expect = 8e-05
Identities = 16/87 (18%), Positives = 35/87 (40%), Gaps = 9/87 (10%)
Query: 380 VDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLT 439
VD ++ + + P+G++ Y VT+ + + D E+ + L
Sbjct: 13 VDVDSIKIAWESPQGQVSRYRVTYS-----SPEDGIHELFPAPDGEE----DTAELQGLR 63
Query: 440 PGVKYQFTIRTVSYNLESGVTSLSART 466
PG +Y ++ + ++ES + T
Sbjct: 64 PGSEYTVSVVALHDDMESQPLIGTQST 90
Score = 37.8 bits (88), Expect = 0.002
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 146 VEIETLNGDSNQMFV----DKTEYVLESLLPGRKYSINVQAVSNGMESP 190
V + +++F ++ L+ L PG +Y+++V A+ + MES
Sbjct: 34 VTYSSPEDGIHELFPAPDGEEDTAELQGLRPGSEYTVSVVALHDDMESQ 82
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 59.8 bits (145), Expect = 5e-11
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 9/94 (9%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEG-FLIQNLTL---HTSIVIGD 614
P + + T S+ ++W P G + + Y G +++++ + + + D
Sbjct: 8 RSPPSNLALASETPDSLQVSWTPPLGRVLHYWLTYAPASGLGPEKSVSVPGARSHVTLPD 67
Query: 615 LKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQT 648
L+ Y V S VSA QT
Sbjct: 68 LQAATKYRVLVSAIYAAGRSE-----AVSATGQT 96
Score = 48.6 bits (116), Expect = 3e-07
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 2/95 (2%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNV-GTSLEAEVT 337
PP+NL L + +++ V W P+G + Y + Y + +V G +
Sbjct: 8 RSPPSNLALASETPDSLQVSWTPPLGRV-LHYWLTYAPASGLGPEKSVSVPGARSHVTLP 66
Query: 338 DMVPGEKCMIQVNSVSYSVESAHPLQINHTISPNP 372
D+ K + V+++ + S T P+
Sbjct: 67 DLQAATKYRVLVSAIYAAGRSEAVSATGQTACPSG 101
Score = 44.0 bits (104), Expect = 2e-05
Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 9/89 (10%)
Query: 380 VDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLT 439
++ + + P GR+ +Y +T+ + + H+ + L
Sbjct: 19 ETPDSLQVSWTPPLGRVLHYWLTYAPASGLGPEKSVSVPGARS---------HVTLPDLQ 69
Query: 440 PGVKYQFTIRTVSYNLESGVTSLSARTMP 468
KY+ + + S S + +T
Sbjct: 70 AATKYRVLVSAIYAAGRSEAVSATGQTAC 98
Score = 38.2 bits (89), Expect = 0.002
Identities = 11/58 (18%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 139 NGSKISY-VEIETLNGDSNQMFV----DKTEYVLESLLPGRKYSINVQAVSNGMESPS 191
G + Y + +G + V ++ L L KY + V A+ S +
Sbjct: 32 LGRVLHYWLTYAPASGLGPEKSVSVPGARSHVTLPDLQAATKYRVLVSAIYAAGRSEA 89
Score = 37.8 bits (88), Expect = 0.003
Identities = 17/67 (25%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 205 LNISWKSDVNSRQDNFEVIYNR-NDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAIS 263
L +SW R ++ + Y + E ++V S + L +L Y + V AI
Sbjct: 24 LQVSWTP-PLGRVLHYWLTYAPASGLGPEKSVSVPGARSHVTLPDLQAATKYRVLVSAIY 82
Query: 264 HGLRSEP 270
RSE
Sbjct: 83 AAGRSEA 89
Score = 36.7 bits (85), Expect = 0.006
Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Query: 475 LVVNNQQSTDSVTLRYTPQNSNHFDFYR--FTLSEPDIPVIEKAANDTDRKVTFNNLTPG 532
L + ++ + DS+ + +TP Y + + P + VT +L
Sbjct: 14 LALASE-TPDSLQVSWTPPLGR-VLHYWLTYAPASGLGPEKSVSVPGARSHVTLPDLQAA 71
Query: 533 KLYNFTVWTVADGVLSTPI 551
Y V + S +
Sbjct: 72 TKYRVLVSAIYAAGRSEAV 90
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 61.8 bits (150), Expect = 1e-10
Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 28/187 (14%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTWVRLPN----VGTS 331
P P+ +E S+ V++ EP G +Y +R ++ W
Sbjct: 9 PSSPSIDQVE-PYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 67
Query: 332 LEAEVTDMVPGEKCMIQV---NSVSYSVESAHPLQIN---HTISPNPATYVAALVDASNV 385
+ + P +++ N SA + P D +++
Sbjct: 68 GIVTIVGLKPETTYAVRLAALNGKGLGEISA-ASEFKTQPVREPSAPKLEGQMGEDGNSI 126
Query: 386 TLEFPRPE---GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGV 442
+ + + I +YLV +R + E H+++ L
Sbjct: 127 KVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSD----------HVMLKSLDWNA 176
Query: 443 KYQFTIR 449
+Y+ +
Sbjct: 177 EYEVYVV 183
Score = 61.0 bits (148), Expect = 2e-10
Identities = 25/186 (13%), Positives = 56/186 (30%), Gaps = 17/186 (9%)
Query: 190 PSFPIIEDLRPIEFGLNISWK---SDVNSRQDNFEVIYNRNDTIT----EDPITVVTTDS 242
PS P I+ + P + + + ++ + + +
Sbjct: 9 PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEG 68
Query: 243 KLLLENLYPGAGYSIQVFAIS---HGLRSEPHDYF--QAVYPKPPTNLTLEKTSSNAVLV 297
+ + L P Y++++ A++ G S ++ P P N++ V
Sbjct: 69 IVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKV 128
Query: 298 KWKEPV--GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQV---NSV 352
+ GS Y +RYR + + S + + + + V N
Sbjct: 129 NLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQ 188
Query: 353 SYSVES 358
S +
Sbjct: 189 GKSKAA 194
Score = 51.7 bits (124), Expect = 2e-07
Identities = 15/117 (12%), Positives = 29/117 (24%), Gaps = 11/117 (9%)
Query: 520 TDRKVTFNNLTPGKLYNFTVW---TVADGVLSTPIQ--RHDRLYPEPITRINATEITDTS 574
+ VT L P Y + G +S + P S
Sbjct: 66 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNS 125
Query: 575 VSLTWDSPR---GEYNAFEVQYLNTEG---FLIQNLTLHTSIVIGDLKPHRNYTFTV 625
+ + + V+Y I+ + +++ L + Y V
Sbjct: 126 IKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSDHVMLKSLDWNAEYEVYV 182
Score = 48.3 bits (115), Expect = 4e-06
Identities = 31/185 (16%), Positives = 53/185 (28%), Gaps = 26/185 (14%)
Query: 370 PNPATYVAALVDASNVTLEFPRPEGR----IEYYLVTWRGIGPEATSTELFTKNVTNDPE 425
P+ + +S ++F PE I Y WR +K
Sbjct: 9 PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWR----AVGEEVWHSKWYDAKEA 64
Query: 426 DKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGV----TSLSARTMPLIESEV--LVVNN 479
+ V I L P Y + ++ G+ + +T P+ E L
Sbjct: 65 SMEGIV--TIVGLKPETTYAVRLAALN---GKGLGEISAASEFKTQPVREPSAPKLEGQM 119
Query: 480 QQSTDSVTLRYTPQNSN-----HFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKL 534
+ +S+ + Q+ H+ LS P I + V +L
Sbjct: 120 GEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRLPSGSD--HVMLKSLDWNAE 177
Query: 535 YNFTV 539
Y V
Sbjct: 178 YEVYV 182
Score = 47.1 bits (112), Expect = 8e-06
Identities = 23/175 (13%), Positives = 51/175 (29%), Gaps = 29/175 (16%)
Query: 138 DNGSKISYVEIE---------TLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAV-SNGM 187
G I + E + + + L P Y++ + A+ G+
Sbjct: 34 TGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGKGL 93
Query: 188 ESPSFPIIEDLRPIEFG---------------LNISWK--SDVNSRQDNFEVIYNRNDTI 230
S +P+ + ++ D S ++ V Y +
Sbjct: 94 GEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIKQDDGGSPIRHYLVRYRALSSE 153
Query: 231 TEDPITVVTTDSKLLLENLYPGAGYSIQVFAI-SHGLRSEPHDYFQAVYPKPPTN 284
+ I + + ++L++L A Y + V A G S+ + +
Sbjct: 154 WKPEIRLPSGSDHVMLKSLDWNAEYEVYVVAENQQGK-SKAAHFVFRTAAAHHHH 207
Score = 39.0 bits (91), Expect = 0.005
Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 11/74 (14%)
Query: 564 RINATEITDTSVSLTWDSPRG-----------EYNAFEVQYLNTEGFLIQNLTLHTSIVI 612
I+ E ++ + +D P E+ A + +++ + + ++ + I
Sbjct: 13 SIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTI 72
Query: 613 GDLKPHRNYTFTVI 626
LKP Y +
Sbjct: 73 VGLKPETTYAVRLA 86
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 65.5 bits (159), Expect = 1e-10
Identities = 98/572 (17%), Positives = 165/572 (28%), Gaps = 201/572 (35%)
Query: 677 PIDVQPGDITFEWSLPGS-----EQNGVIR-KF-------TISYAQEAACNHNQRLHAKF 723
P+ + G + +P + Q ++ +F T +A + L KF
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQ---LQEQFNKILPEPTEGFAADDEPTTPAELVGKF 64
Query: 724 QLPRVNSKKLKGWPGT----LRTDW----RSY-----IYKLQAELGLHMEPETIWKQKMP 770
L V+S G L Y I+ L A+L L T+ K K
Sbjct: 65 -LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKL-LQENDTTLVKTK-- 120
Query: 771 IPRRCGLNPNSDIIKVNENNIKRINSFNIYFLA---PPRPSSQVVPTEVCRTSTTIQIRF 827
++IK Y A RP + + + R +
Sbjct: 121 -----------ELIK-------------NYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 828 ---------RKNYFSEKNGAIIY--YTVIVAE-----------------DDSKN-SSGLE 858
+YF E +Y Y V+V + D K + GL
Sbjct: 157 VAIFGGQGNTDDYFEEL--RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 859 MPSW-------RDVQ-----AYSVWPPYQVLEPFQFFKNMSVEDFTIGE--ESCEGKTGY 904
+ W D S P V++ + + FT GE +G TG+
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPIS-CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 905 CNGPLKSGSTYKVKIRAFTTPDKFTDTAYS---------------FPISTGWYNFALLGQ 949
G + + V I + + F + +P ++ ++L
Sbjct: 274 SQGLVTA-----VAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLP--PSILED 326
Query: 950 DQDN-----TP-LVV-GITIPFILVLILCMTVFILRSRRKNVRKTTESRNADNMSL---Q 999
+N +P L + +T + + + N + +SL
Sbjct: 327 SLENNEGVPSPMLSISNLTQEQVQDYV----------NKTNSHLPAGKQ--VEISLVNGA 374
Query: 1000 DSIVETSRPIRLENFAEHYRIMSADSDFRFSE-EFEELKHVGREQSCTAADLPCNRPKNR 1058
++V + P L R A S S F E K + NR
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERK-------------L--KFSNR 419
Query: 1059 FTNI-LPYDHSRFKLQPV------DDEEGSDYINANY--VP------GHNSPRRSGTLIA 1103
F + P+ HS L P D + + NA +P G + R I+
Sbjct: 420 FLPVASPF-HSHL-LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSD-LRVLSGSIS 476
Query: 1104 ---LDRILQ-----------SINHSDVVDIFG 1121
+D I++ H ++D FG
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATH--ILD-FG 505
Score = 63.5 bits (154), Expect = 4e-10
Identities = 90/582 (15%), Positives = 174/582 (29%), Gaps = 179/582 (30%)
Query: 254 GYSIQVFAISHG-LRSE---PH----------DYFQAVYPKPPTNLTL-EKTSSNAVLV- 297
YS + +SHG L P + F + P+P ++ ++ A LV
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVG 62
Query: 298 ----------------KWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVP 341
++ + + TE+ Y D + + L E +
Sbjct: 63 KFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGND-----IHALAAKLLQENDTTLV 117
Query: 342 GEKCMIQVNSVSYSVESAHPLQINHTISPNPATYVAALVDASNVTLEFPRPEGRIEYYL- 400
K +I+ +Y + + + N A + A + + F +G + Y
Sbjct: 118 KTKELIK----NY-ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFG-GQGNTDDYFE 171
Query: 401 ------VTWRG-IGP--EATSTELFTKNVTNDPEDKDKHVHILID--------QLTPGVK 443
T+ +G + ++ L + D +K ++ TP
Sbjct: 172 ELRDLYQTYHVLVGDLIKFSAETL--SELIRTTLDAEKVFTQGLNILEWLENPSNTPDKD 229
Query: 444 YQFTIRTVSYNLESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLR---YTPQNSNHFDF 500
Y +I +S PLI ++ Q + VT + +TP +
Sbjct: 230 YLLSI-PIS--------------CPLI---GVI---QLAHYVVTAKLLGFTP--GELRSY 266
Query: 501 YR-FTLSEPDIPV---IEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTPIQRHDR 556
+ T + I A D+ +F K + GV + +
Sbjct: 267 LKGATGHSQGLVTAVAI--AETDSWE--SFFVSVR-KAITVLFFI---GVRCY--EAYPN 316
Query: 557 LYPEPITRINATEITDT------SVSLTWDSPRGEYNAFEVQYLNTEGFLIQNLTLHTSI 610
P ++ E + S+S + + + + V N+ L + S+
Sbjct: 317 TSLPPSILEDSLENNEGVPSPMLSIS---NLTQEQVQDY-VNKTNSH--LPAGKQVEISL 370
Query: 611 VIGDLKPHRN----------YTFTVIVR-----SGTESS----------VLRRSLPVSAI 645
V G +N Y + +R SG + S R LPV++
Sbjct: 371 VNG----AKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASP 426
Query: 646 FQTHESLPGKMDRTIVDTWHFVRFFQAEKFHPIDVQPGDITF---EWSLPGSEQNGVIRK 702
F H L + A D+ +++F + +P V
Sbjct: 427 F--HSHL---LV-------------PASDLINKDLVKNNVSFNAKDIQIP------VYDT 462
Query: 703 FTISYAQEAACNHNQRL-HAKFQLPRVNSKKLKGWPGTLRTD 743
F S + + + ++R+ +LP V W T +
Sbjct: 463 FDGSDLRVLSGSISERIVDCIIRLP-VK------WETTTQFK 497
Score = 52.7 bits (126), Expect = 7e-07
Identities = 77/444 (17%), Positives = 129/444 (29%), Gaps = 143/444 (32%)
Query: 13 GQEGLLASSNYYSFSCVIAELQVPGCLSMLRRSWQPLSIPITK---------SRDEPTQC 63
GQ G +++ Y F EL+ L +++ L + K R
Sbjct: 162 GQ-G---NTDDY-FE----ELR------DLYQTYHVLVGDLIKFSAETLSELIRTTLDAE 206
Query: 64 DM-SEGLETRQNLSGPEPLPVLD-LTAVMDDKTGDLFISWKPDNASYQ-DMYKISIKSIL 120
+ ++GL + L P P D L ++ IS P Q Y ++ K +
Sbjct: 207 KVFTQGLNILEWLENPSNTPDKDYLLSI--------PISC-PLIGVIQLAHYVVTAKLLG 257
Query: 121 LEEEHQKQFLMGFLGDCDNGSKISYVEIETLNGDSNQMFVDKTEYVLESLL--------- 171
+ +L G G G ++ V I DS + F + L
Sbjct: 258 FTPGELRSYLKGATG-HSQGL-VTAVAIAE--TDSWESFFVSVRKAITVLFFIGVRCYEA 313
Query: 172 -PGRKYSINV--QAVSNGMESPSFPI--IEDLR---------------PIEFGLNISWKS 211
P ++ ++ N PS P+ I +L P + IS
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPS-PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISL-- 370
Query: 212 DVNSRQDNFEVIYNRNDTITEDPITVVT--TDS----KLLLENLYPGAG-------YSIQ 258
VN N VV+ S L L +G +S +
Sbjct: 371 -VNGA-KNL----------------VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 259 VFAISHG-LR-SEPHDYFQAVYPKPPTNLTLEKTSSNAVLVK---WKEPVGSIFTEYSIR 313
S+ L + P F + P ++L + N V + PV
Sbjct: 413 KLKFSNRFLPVASP---FHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV---------- 459
Query: 314 YRTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQVNSVSYSVESAHPLQINHTIS--PN 371
Y T L + S+ + D + + V E+ + H + P
Sbjct: 460 YDTF---DGSDLRVLSGSISERIVDCI----IRLPVK-----WETTTQFKATHILDFGPG 507
Query: 372 PATYVAALVDASNVTLEFPRPEGR 395
A+ + L N +G
Sbjct: 508 GASGLGVLT-HRNK-------DGT 523
Score = 48.1 bits (114), Expect = 2e-05
Identities = 85/558 (15%), Positives = 148/558 (26%), Gaps = 212/558 (37%)
Query: 638 RSLPVSAIFQTHESLPGKMDRTI-VDTWHFVRFFQ-AEKFHPIDVQPGDITFEWSLPGSE 695
R L +S H G ++ + V T F Q E+F+ I +P + P +
Sbjct: 7 RPLTLS-----H----GSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTP 57
Query: 696 QNGVIR--KFTISYAQEAACNHNQRLHAKFQLPRVNSKKLKGWPGTLRTDWRSYIYKLQA 753
V + + S + + ++ L + L+G D I+ L A
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQV-LNLCLTEFENCYLEG------ND----IHALAA 106
Query: 754 ELGLHMEPETIWKQKMPIPRRCGLNPNSDIIKVNENNIKRINSFNIYFLA---PPRPSSQ 810
+L L T+ K K ++IK Y A RP +
Sbjct: 107 KL-LQENDTTLVKTK-------------ELIK-------------NYITARIMAKRPFDK 139
Query: 811 VVPTEVCRTSTTIQIRF---------RKNYFSEKNGAIIYYTVIVAEDDSKNSSGLEMPS 861
+ + R + +YF E L
Sbjct: 140 KSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE----------------------L---- 173
Query: 862 WRDVQAYSVWPPYQVLEPFQFFKNMSVEDFTIGEESCEGKTGYCNGPLKSGSTYKVKIRA 921
RD+ Y + + K + + + + + + G + I
Sbjct: 174 -RDL--YQTYHVL--VGDL--IKFSAETLSELIRTTLDAEKVFTQG---------LNILE 217
Query: 922 F-TTPDKFTDTAY--SFPISTGWYNFALLGQDQDNTPLVVGITIPFILVLILC---MTVF 975
+ P D Y S PIS P I V+ L +T
Sbjct: 218 WLENPSNTPDKDYLLSIPIS-----------------------CPLIGVIQLAHYVVTAK 254
Query: 976 ILRSRRKNVRKTTESRNADNMSLQDSIVETSRPIRLENFAEHYRIMSADSDFRFSEEFEE 1035
+L +R + + L ++ I DS E F
Sbjct: 255 LLGFTPGELRSYLKGATGHSQGLVTAVA----------------IAETDSW----ESFFV 294
Query: 1036 --------LKHVG-REQSCTAADLPCNRPKNRFTNILPYDHSRFKLQPVDDEEGS----- 1081
L +G R P T++ P +++ EG
Sbjct: 295 SVRKAITVLFFIGVRCYEAY----PN-------TSLPPSILE----DSLENNEGVPSPML 339
Query: 1082 --------------DYINANYVPG--------HNSPRR---SG---TLIALDRILQSINH 1113
+ N+ ++P N + SG +L L+ L+
Sbjct: 340 SISNLTQEQVQDYVNKTNS-HLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA 398
Query: 1114 SDVVDIFGIVYHMRKERV 1131
+D I + RK +
Sbjct: 399 PSGLDQSRIPFSERKLKF 416
Score = 39.3 bits (91), Expect = 0.010
Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 39/148 (26%)
Query: 993 ADNMSLQD--SIVETSRPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADL 1050
AD MS++ +V YR + +GR A
Sbjct: 1774 ADVMSIESLVEVV-------------FYR-------GMTMQVAVPRDELGRSNYGMIAIN 1813
Query: 1051 PCNRPKNRFTNILPYDHSRFKLQPVDDEEGSD-YINANYVPGHNSPRR----SGTLIALD 1105
P R + ++ ++ V G I NY N + +G L ALD
Sbjct: 1814 P-----GRVAASFSQEALQYVVERVGKRTGWLVEI-VNY----NVENQQYVAAGDLRALD 1863
Query: 1106 RILQSINHSDV--VDIFGIVYHMRKERV 1131
+ +N + +DI + + E V
Sbjct: 1864 TVTNVLNFIKLQKIDIIELQKSLSLEEV 1891
Score = 33.5 bits (76), Expect = 0.55
Identities = 32/167 (19%), Positives = 53/167 (31%), Gaps = 63/167 (37%)
Query: 496 NHF-DFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLY-NF---TVWTVADGVLSTP 550
NHF D Y F++ + ++ N + + F ++ N+ T+ DG
Sbjct: 1651 NHFKDTYGFSILD----IVIN--NPVNLTIHFGGEKGKRIRENYSAMIFETIVDG----- 1699
Query: 551 IQRHDRLYPEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEGFLIQNLTLHTSI 610
+L E I + EI + S S T+ S +G L + T T
Sbjct: 1700 -----KLKTEKIFK----EINEHSTSYTFRSE--------------KGLL--SATQFTQP 1734
Query: 611 VIGDLKPHRNYTFTV---IVRSGTESSVLRR--SLPVSAIFQTHESL 652
+ + L+ +P A F H SL
Sbjct: 1735 AL----------TLMEKAAFE------DLKSKGLIPADATFAGH-SL 1764
Score = 33.5 bits (76), Expect = 0.64
Identities = 39/238 (16%), Positives = 70/238 (29%), Gaps = 89/238 (37%)
Query: 977 LRSRRKNVRKTTESRNADN-------MSLQDSIV-------------ETSRPIRLENFAE 1016
L K + ADN S+ D IV E + IR EN++
Sbjct: 1635 LYKTSKAAQDVWN--RADNHFKDTYGFSILD-IVINNPVNLTIHFGGEKGKRIR-ENYSA 1690
Query: 1017 HYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPCNRPKN----------------RFT 1060
D + + F+E+ + + + + +
Sbjct: 1691 MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSK 1750
Query: 1061 NILPYD-----HSRFKLQPVDDEEG--------SDYIN---------------ANYVPGH 1092
++P D HS L G +D ++ VP
Sbjct: 1751 GLIPADATFAGHS---L-------GEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRD 1800
Query: 1093 NSPRRSGTLIALD--RILQSINHSDVVDIFGIVYHMRKERVWMVQ-----TE-QQYIC 1142
R + +IA++ R+ S + + + V + K W+V+ E QQY+
Sbjct: 1801 ELGRSNYGMIAINPGRVAASFSQEALQYV---VERVGKRTGWLVEIVNYNVENQQYVA 1855
Score = 32.3 bits (73), Expect = 1.3
Identities = 47/285 (16%), Positives = 74/285 (25%), Gaps = 101/285 (35%)
Query: 933 YSFPISTGWYNFALLGQDQDNTPLVVGITIPFILVLILCMTVFILRSRRKNVRKTTESRN 992
+ + T + A Q+Q F K + + TE
Sbjct: 18 HVLLVPTASFFIASQLQEQ------------FN----------------KILPEPTEGFA 49
Query: 993 ADNMSLQDSIVETSRPIRLENFAEHYRIMSADSDFRFSEEFEELKHVGREQSCTAADLPC 1052
AD+ E + P L + + + E VG+ L
Sbjct: 50 ADD--------EPTTPAEL--VG---KFLG------YVSSLVEPSKVGQFDQVLNLCL-- 88
Query: 1053 NRPKNRF-TNILPYD--HSR-FKLQPVDDEEGSD-------YINANYVPGHNSPRRSGTL 1101
F L + H+ KL +D YI A + ++S +
Sbjct: 89 ----TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNS- 143
Query: 1102 IALDRILQSIN--HSDVVDIFG-------------IVYHMRKERVWMVQTEQQYICIHQC 1146
AL +++ ++ +V IFG +Y V I
Sbjct: 144 -AL---FRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV------GDLIKFSAE 193
Query: 1147 LLAVLEGNENQLPLREIHHNQGY---EGLSQPMQFRP----LASA 1184
L+ L E QG E L P P L S
Sbjct: 194 TLSELIRTTLD---AEKVFTQGLNILEWLENPSN-TPDKDYLLSI 234
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 63.1 bits (152), Expect = 3e-10
Identities = 56/466 (12%), Positives = 134/466 (28%), Gaps = 59/466 (12%)
Query: 205 LNISWKSDVNSRQD-NFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAIS 263
+ +W + + ++ + + + L PG +
Sbjct: 20 WDCTWPAPLGVSPGTVKDICIKDRFHSCHP-----LETTNVKIPALSPGDHEVTINYLNG 74
Query: 264 HGLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVL-VKWKEPVGSIFTE----YSIRYRTEE 318
+ ++ ++ P+ P L L + L +KW + ++ + I+
Sbjct: 75 FQSKFTLNEKDVSLIPETPEILDLSADFFTSSLLLKWNDRGSALPHPSNATWEIKVLQNP 134
Query: 319 DKTWVRLPNVGTSLEAEVTDMVPGEKCMIQVNSVSYSVESAHPLQINHTISPNPATYVAA 378
V L + T L + T + + ++SV + H + +
Sbjct: 135 RTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQCATHSVSIRWHIDSPHFSGYKEWSDWSP 194
Query: 379 LVDA--------------------SNVTLEFPRPEGRIEYYLVT--WRGIGPEATSTELF 416
L + SN+T+ P + + I + +
Sbjct: 195 LKNISWIRNTETNVFPQDKVVLAGSNMTICCMSPTKVLSGQIGNTLRPLIHLYGQTVAIH 254
Query: 417 TKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGVTSLSARTMPLIESEVLV 476
N+ E+ ++ + D G LS T + + ++
Sbjct: 255 ILNIPV-SENSGTNIIFITDDDVYGTVVFAGY------PPDVPQKLSCETH---DLKEII 304
Query: 477 VNNQQSTDSVTLRYTPQNSNHFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYN 536
+ T P+N+ + F + + + + + ++ +++N
Sbjct: 305 CSWNPGRI--TGLVGPRNTEYTLFESIS-GKSAVFHRIEGLTNETYRLGVQMHPGQEIHN 361
Query: 537 FTVWTV-ADGVLSTPI--QRHDRLYPEPITRINATEITDTSVSLTWDSPRGEYNA---FE 590
FT+ G + + +R+ P T + +I T V+ +W P +
Sbjct: 362 FTLTGRNPLGQAQSAVVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQ 421
Query: 591 VQYLNTEG-------FLIQNLTLHTSIVIGDLKPHRNYTFTVIVRS 629
++ + + + L P+ YTF V S
Sbjct: 422 IEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRVRCSS 467
Score = 54.6 bits (130), Expect = 1e-07
Identities = 29/241 (12%), Positives = 69/241 (28%), Gaps = 30/241 (12%)
Query: 137 CDNGSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMES------- 189
C + +K+ +I ++ + ++ N+ +++
Sbjct: 225 CMSPTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDDVYGTVVFAG 284
Query: 190 --PSFPIIEDLRPIEFG---LNISWKSD-----VNSRQDNFEVIY--NRNDTITEDPITV 237
P P + L + SW V R + + + + +
Sbjct: 285 YPPDVP--QKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGL 342
Query: 238 VTTDSKLLLENLYPGAGYSIQVFAISHGLRSEPHDYF---QAVYPKPPTNLTLEKTSSNA 294
+L ++ ++ + + +++ + V P PT+L ++ +S
Sbjct: 343 TNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHDPTSLKVKDINSTV 402
Query: 295 VLVKWKEP--VGSIFTEYSIRYRTEEDKTWVRLPNV----GTSLEAEVTDMVPGEKCMIQ 348
V W P I I K VR + ++ V + P +
Sbjct: 403 VTFSWYLPGNFTKINLLCQIEICKANSKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFR 462
Query: 349 V 349
V
Sbjct: 463 V 463
Score = 47.3 bits (111), Expect = 3e-05
Identities = 53/432 (12%), Positives = 120/432 (27%), Gaps = 55/432 (12%)
Query: 50 SIPITKSRDEPTQCDMSEGLETRQNLSGPE----PLPVLDLTAVMDDKTGDLFISWKPDN 105
IP D + G +++ L+ + P L D T L + W
Sbjct: 56 KIPALSPGDHEVTINYLNGFQSKFTLNEKDVSLIPETPEILDLSADFFTSSLLLKWNDRG 115
Query: 106 ASYQDMYKISIKSILLEEEHQKQFLMGFLGDCDNGSKISYVEIETLNGDSNQMFVDKTEY 165
++ + + +L+ ++ V + T+ + +
Sbjct: 116 SALPHPSNATWEIKVLQNP--------------RTEPVALVLLNTMLSGKDTVQHWNWTS 161
Query: 166 VLESLLPGRKYSINVQAVSNGMESPSFPIIEDLRPIE-------FGLNISWKSDVNSRQD 218
L L +S++++ + + D P++ N+ + V
Sbjct: 162 DLP--LQCATHSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAGS 219
Query: 219 NFEVIYNRNDTITE--------DPITVVTTDSKLLLENLYPGAGYSIQVFAISHGLRSEP 270
N + + I + + + N+ + I+
Sbjct: 220 NMTICCMSPTKVLSGQIGNTLRPLIHLYGQTVAIHILNIPVSENSGTNIIFITDDDVYGT 279
Query: 271 HDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEP-----VGSIFTEYSIRYRTEEDKTWVRL 325
+ P P L+ E ++ W VG TEY++
Sbjct: 280 VVFAGYP-PDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHR 338
Query: 326 PN--VGTSLEAEVTDMVPGEKCMIQVNSVSY--SVESAHPLQINHTISPNPATYVAAL-V 380
+ V E + + +SA + + ++P+ T + +
Sbjct: 339 IEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAVVINVTERVAPHDPTSLKVKDI 398
Query: 381 DASNVTL--EFPRPEGRIEY-YLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQ 437
+++ VT P +I + + + +D H+ +D+
Sbjct: 399 NSTVVTFSWYLPGNFTKINLLCQIEICKANSKKEVRNATIRGA------EDSTYHVAVDK 452
Query: 438 LTPGVKYQFTIR 449
L P Y F +R
Sbjct: 453 LNPYTAYTFRVR 464
Score = 36.9 bits (84), Expect = 0.037
Identities = 49/465 (10%), Positives = 121/465 (26%), Gaps = 80/465 (17%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPVGSIF-TEYSIRYRTEE------DKTWVRLPNVGTS 331
+L + W P+G T I + + T V++P +
Sbjct: 4 DDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFHSCHPLETTNVKIPALSPG 63
Query: 332 LEAEVTDMVPGEKCMIQVNSVSYSVESAHPLQINHTISPNPATYVAALVDASNVTLE--- 388
+ + G + +N S+ P ++ ++A S++ L+
Sbjct: 64 DHEVTINYLNGFQSKFTLNEKDVSLIPETPEILD----------LSADFFTSSLLLKWND 113
Query: 389 --FPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQF 446
P + + + + + + KD H P
Sbjct: 114 RGSALPHPSNATWEIK---VLQNPRTEPVALVLLNTMLSGKDTVQHWNWTSDLPLQCATH 170
Query: 447 TIRTVSYNLESGVTSLSARTMPLIESEVLVVNNQQST-----------DSVTLRYTPQNS 495
++ + + + + + N ++ ++T+
Sbjct: 171 SVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNTETNVFPQDKVVLAGSNMTICCMSPTK 230
Query: 496 NHFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTPIQRHD 555
TL P I + + N+ + + + D + +
Sbjct: 231 VLSGQIGNTLR-PLIHL-----YGQTVAIHILNIPVSENSGTNIIFITDDDVYGTVVFAG 284
Query: 556 RLYPEPITRINATEITDTSVSLTWDSPR--GEYNAFEVQY-----LNTEGFLIQNLTLHT 608
P+ +++ + +W+ R G +Y ++ + + + T
Sbjct: 285 YP-PDVPQKLSCETHDLKEIICSWNPGRITGLVGPRNTEYTLFESISGKSAVFHRIEGLT 343
Query: 609 ----SIVIGDLKPHRNYTFTVIVRS--GTESSVLRRSLPVSAIFQTHESLPGKMDRTIVD 662
+ + + FT+ R+ G S + +++
Sbjct: 344 NETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSAV-----------------------VIN 380
Query: 663 TWHFVRFFQAEKFHPIDVQPGDITFEWSLPGSEQNGVIRKFTISY 707
V D+ +TF W LPG+ + I
Sbjct: 381 VTERVAPHDPTSLKVKDINSTVVTFSWYLPGN-FTKINLLCQIEI 424
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 60.1 bits (146), Expect = 3e-10
Identities = 34/188 (18%), Positives = 66/188 (35%), Gaps = 24/188 (12%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTE-EDKTWVRLP-NVGTSLEA 334
P P + ++ + W++ S Y+I++ T +W V + +
Sbjct: 6 PNAPKLTGIT-CQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSS 64
Query: 335 EVTDMVPGEK---CMIQVNSVSYSVESAHPLQIN---HTISPNPATYVAALVDASNVTLE 388
V M P +I N + S SAH NP V + +N+ +
Sbjct: 65 FVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVIS 124
Query: 389 F-PRPE----GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVK 443
+ P PE +Y V+W+ + + N+ + ++ +I+I VK
Sbjct: 125 WTPMPEIEHNAPNFHYYVSWK---RDIPAAAWENNNIFDWRQN-----NIVIADQPTFVK 176
Query: 444 YQFTIRTV 451
Y + +
Sbjct: 177 YLIKVVAI 184
Score = 57.4 bits (139), Expect = 3e-09
Identities = 32/193 (16%), Positives = 63/193 (32%), Gaps = 19/193 (9%)
Query: 188 ESPSFPIIEDLRPIEFGLNISWK--SDVNSRQDNFEVIYNRNDTIT--EDPITVVTTDSK 243
+ P+ P + + I W+ D S ++ + +N + T + V
Sbjct: 4 DVPNAPKLTGITCQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDS 63
Query: 244 LLLENLYPGAGYSIQVFAISH---GLRSEPHDYFQ---AVYPKPPTNLTLEKTSSNAVLV 297
+ + P A Y+ +V A + S D V K P N+ + T N +++
Sbjct: 64 SFVVQMSPWANYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVI 123
Query: 298 KWKEPV----GSIFTEYSIRYRTEEDKTWVRLPNV--GTSLEAEVTDMVPGEKCMIQV-- 349
W + Y + ++ + N+ + D K +I+V
Sbjct: 124 SWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVA 183
Query: 350 -NSVSYSVESAHP 361
N S +A
Sbjct: 184 INDRGESNVAAEE 196
Score = 44.3 bits (105), Expect = 7e-05
Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 28/158 (17%)
Query: 559 PEPITRINATEITDTSVSLTWDSP---RGEYNAFEVQYLNTEG-----FLIQNLTLHTSI 610
P T + W+ R + +Q+ + + + S
Sbjct: 6 PNAPKLTGIT-CQADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSS 64
Query: 611 VIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFF 670
+ + P NYTF VI + +S S S T +P K
Sbjct: 65 FVVQMSPWANYTFRVIAFNKIGAS--PPSAH-SDSCTTQPDVPFK--------------- 106
Query: 671 QAEKFHPIDVQPGDITFEWS-LPGSEQNGVIRKFTISY 707
+ +P ++ W+ +P E N + +S+
Sbjct: 107 NPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSW 144
Score = 43.6 bits (103), Expect = 1e-04
Identities = 21/166 (12%), Positives = 40/166 (24%), Gaps = 23/166 (13%)
Query: 482 STDSVTLRYTPQNSNH-----FDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYN 536
D + + Q N + T P ++P Y
Sbjct: 17 QADKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYT 76
Query: 537 FTVW---TVADGVLSTPIQRH----DRLYPEPITRINATEITDTSVSLTWDSPRGEYN-- 587
F V + S D + P + ++ ++W +
Sbjct: 77 FRVIAFNKIGASPPSAHSDSCTTQPDVPFKNP-DNVVGQGTEPNNLVISWTPMPEIEHNA 135
Query: 588 ---AFEVQY---LNTEGFLIQNLTLH--TSIVIGDLKPHRNYTFTV 625
+ V + + + N+ +IVI D Y V
Sbjct: 136 PNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKV 181
Score = 42.8 bits (101), Expect = 2e-04
Identities = 25/157 (15%), Positives = 48/157 (30%), Gaps = 34/157 (21%)
Query: 138 DNGSKISY--VEIETLNGDSNQMFV-----DKTEYVLESLLPGRKYSINVQAV-SNGMES 189
DN S I + ++ T ++ + + + P Y+ V A G
Sbjct: 30 DNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDSSFVVQMSPWANYTFRVIAFNKIGASP 89
Query: 190 PSFPI------------------IEDLRPIEFGLNISWK----SDVNSRQDNFEVIYNRN 227
PS + P L ISW + N+ ++ V + R+
Sbjct: 90 PSAHSDSCTTQPDVPFKNPDNVVGQGTEPNN--LVISWTPMPEIEHNAPNFHYYVSWKRD 147
Query: 228 DTITEDPITVVT--TDSKLLLENLYPGAGYSIQVFAI 262
+ + +++ + Y I+V AI
Sbjct: 148 IPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAI 184
Score = 40.1 bits (94), Expect = 0.002
Identities = 28/186 (15%), Positives = 57/186 (30%), Gaps = 26/186 (13%)
Query: 370 PNPATYVAALVDASNVTLEF-PRPEGR--IEYYLVTWRGIGPEATSTELFTKNVTNDPED 426
PN A + + + + R I +Y + + + + + P
Sbjct: 6 PNAPKLTGITCQADKAEIHWEQQGDNRSPILHYTIQFN----TSFTPASWDAAYEKVPNT 61
Query: 427 KDKHVHILIDQLTPGVKYQFTIRTVSYNL----ESGVTSLSARTMPLIESE--VLVVNNQ 480
+ Q++P Y F R +++N S S T P + + VV
Sbjct: 62 D----SSFVVQMSPWANYTF--RVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQG 115
Query: 481 QSTDSVTLRYTP-----QNSNHFDFY-RFTLSEPDIPVIEKAANDTD-RKVTFNNLTPGK 533
+++ + +TP N+ +F +Y + P D + +
Sbjct: 116 TEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFDWRQNNIVIADQPTFV 175
Query: 534 LYNFTV 539
Y V
Sbjct: 176 KYLIKV 181
Score = 30.8 bits (70), Expect = 1.8
Identities = 16/137 (11%), Positives = 32/137 (23%), Gaps = 33/137 (24%)
Query: 64 DMSEGLETRQNLSGPEPLPVLDLTAVMDDKTGDLFISWKPDNASYQ----DMYKISIKSI 119
S ++ ++ + +L ISW P Y +S K
Sbjct: 89 PPSAHSDSCTTQPDVPFKNPDNVVGQGTEPN-NLVISWTPMPEIEHNAPNFHYYVSWKR- 146
Query: 120 LLEEEHQKQFLMGFLGDCDNGSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSIN 179
+ ++ + V+ KY I
Sbjct: 147 -------------------DIPAAAWENNNIFDWRQ-------NNIVIADQPTFVKYLIK 180
Query: 180 VQAV-SNGMESPSFPII 195
V A+ G + + +
Sbjct: 181 VVAINDRGESNVAAEEV 197
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 57.1 bits (138), Expect = 3e-10
Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNAFEVQY-LNTEGFLIQNLTL---HTSIVIGD 614
T + TEIT +S ++W S + F V+Y L+ EG Q L L TS+ I D
Sbjct: 6 HLVATSESVTEITASSFVVSWVSASDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPD 65
Query: 615 LKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQT 648
L P R Y V S + + QT
Sbjct: 66 LLPGRKYIVNVYQISEDG-----EQSLILSTSQT 94
Score = 54.4 bits (131), Expect = 2e-09
Identities = 15/90 (16%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNV-GTSLEAEVT 337
T+ ++ + ++++ +V W ++ + + + Y E+ + ++ T+ +
Sbjct: 6 HLVATSESVTEITASSFVVSWVSASDTV-SGFRVEYELSEEGDEPQYLDLPSTATSVNIP 64
Query: 338 DMVPGEKCMIQVNSVSYSVESAHPLQINHT 367
D++PG K ++ V +S E + L + T
Sbjct: 65 DLLPGRKYIVNVYQISEDGEQSLILSTSQT 94
Score = 38.6 bits (90), Expect = 0.001
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 3/51 (5%)
Query: 142 KISYVEIETLNGDSNQMFVD--KTEYVLESLLPGRKYSINVQAVSNGMESP 190
++ Y E + + + T + LLPGRKY +NV +S E
Sbjct: 37 RVEYELSEE-GDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQS 86
Score = 37.1 bits (86), Expect = 0.003
Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 205 LNISWKSDVNSRQDNFEVIYNRNDTITEDPITVV-TTDSKLLLENLYPGAGYSIQVFAIS 263
+SW S + F V Y ++ E + +T + + + +L PG Y + V+ IS
Sbjct: 22 FVVSWVS-ASDTVSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNVYQIS 80
Query: 264 HGLRSEP 270
Sbjct: 81 EDGEQSL 87
Score = 34.4 bits (79), Expect = 0.031
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 482 STDSVTLRYTPQNSNHFDFYR--FTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTV 539
+ S + + + +R + LSE T V +L PG+ Y V
Sbjct: 18 TASSFVVSWVSASDT-VSGFRVEYELSEEGDEPQYLDLPSTATSVNIPDLLPGRKYIVNV 76
Query: 540 WTVADGVLSTPI 551
+ +++ + I
Sbjct: 77 YQISEDGEQSLI 88
Score = 34.4 bits (79), Expect = 0.034
Identities = 16/99 (16%), Positives = 35/99 (35%), Gaps = 10/99 (10%)
Query: 369 SPNPATYVAAL-VDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDK 427
S AT + + AS+ + + + + V + E ++ +
Sbjct: 5 SHLVATSESVTEITASSFVVSWVSASDTVSGFRVEYE---LSEEGDEPQYLDLPSTA--- 58
Query: 428 DKHVHILIDQLTPGVKYQFTIRTVSYNLESGVTSLSART 466
+ I L PG KY + +S + E + +++T
Sbjct: 59 ---TSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQT 94
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 56.7 bits (137), Expect = 6e-10
Identities = 22/96 (22%), Positives = 40/96 (41%), Gaps = 6/96 (6%)
Query: 559 PEPITRINATEITDTSVSLTWDSP--RGEYNAFEVQYLNTEG-FLIQNLTL---HTSIVI 612
T++ T TS+ ++WD+P + + Y T G +Q T+ ++ I
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAPMSSSSVYYYRITYGETGGNSPVQEFTVPYSSSTATI 64
Query: 613 GDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQT 648
L P +YT TV + + P+S ++T
Sbjct: 65 SGLSPGVDYTITVYAWGEDSAGYMFMYSPISINYRT 100
Score = 45.5 bits (108), Expect = 4e-06
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 6/95 (6%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV-GSIFTEYSIRYRTEEDKTWVRLPNV-GTSLEAEV 336
PT L + + ++L+ W P+ S Y I Y + V+ V +S A +
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDAPMSSSSVYYYRITYGETGGNSPVQEFTVPYSSSTATI 64
Query: 337 TDMVPGEKCMIQV---NSVSYSVES-AHPLQINHT 367
+ + PG I V S P+ IN+
Sbjct: 65 SGLSPGVDYTITVYAWGEDSAGYMFMYSPISINYR 99
Score = 37.1 bits (86), Expect = 0.004
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 14/82 (17%)
Query: 390 PRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIR 449
P + YY +T+ G + E ++ I L+PGV Y T+
Sbjct: 28 PMSSSSVYYYRITYGETGGNSPVQEFTVPYSSS---------TATISGLSPGVDYTITVY 78
Query: 450 TV-----SYNLESGVTSLSART 466
Y S++ RT
Sbjct: 79 AWGEDSAGYMFMYSPISINYRT 100
Score = 35.9 bits (83), Expect = 0.010
Identities = 15/58 (25%), Positives = 21/58 (36%), Gaps = 6/58 (10%)
Query: 142 KISYVEIETLNGDSNQMFV--DKTEYVLESLLPGRKYSINVQAVSN---GMESPSFPI 194
+I+Y E N + V + + L PG Y+I V A G PI
Sbjct: 38 RITYGETGG-NSPVQEFTVPYSSSTATISGLSPGVDYTITVYAWGEDSAGYMFMYSPI 94
Score = 31.3 bits (71), Expect = 0.49
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 205 LNISWK-SDVNSRQDNFEVIYNRNDTIT-EDPITVVTTDSKLLLENLYPGAGYSIQVFAI 262
L ISW +S + + Y + TV + S + L PG Y+I V+A
Sbjct: 21 LLISWDAPMSSSSVYYYRITYGETGGNSPVQEFTVPYSSSTATISGLSPGVDYTITVYAW 80
Query: 263 SHGLRSEP 270
Sbjct: 81 GEDSAGYM 88
Score = 30.1 bits (68), Expect = 0.98
Identities = 17/79 (21%), Positives = 30/79 (37%), Gaps = 4/79 (5%)
Query: 475 LVVNNQQSTDSVTLRYTPQNSN-HFDFYR--FTLSEPDIPVIEKAANDTDRKVTFNNLTP 531
L V T S+ + + S+ +YR + + + PV E + T + L+P
Sbjct: 11 LEVVAATPT-SLLISWDAPMSSSSVYYYRITYGETGGNSPVQEFTVPYSSSTATISGLSP 69
Query: 532 GKLYNFTVWTVADGVLSTP 550
G Y TV+ +
Sbjct: 70 GVDYTITVYAWGEDSAGYM 88
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 56.2 bits (136), Expect = 6e-10
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 5/94 (5%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEG-FLIQNLTL---HTSIVIGD 614
T++ T TS+ ++WD+ + + + Y T G +Q T+ ++ I
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDASSSSVSYYRITYGETGGNSPVQEFTVPGSSSTATISG 64
Query: 615 LKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQT 648
L P +YT TV P S ++T
Sbjct: 65 LSPGVDYTITVYAYYSYYDL-YYSYSPSSINYRT 97
Score = 53.2 bits (128), Expect = 9e-09
Identities = 23/93 (24%), Positives = 37/93 (39%), Gaps = 5/93 (5%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNV-GTSLEAEVT 337
PT L + + ++L+ W S+ + Y I Y + V+ V G+S A ++
Sbjct: 5 SSVPTKLEVVAATPTSLLISWDASSSSV-SYYRITYGETGGNSPVQEFTVPGSSSTATIS 63
Query: 338 DMVPGEKCMIQV---NSVSYSVESAHPLQINHT 367
+ PG I V S S P IN+
Sbjct: 64 GLSPGVDYTITVYAYYSYYDLYYSYSPSSINYR 96
Score = 38.5 bits (90), Expect = 0.001
Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 13/91 (14%)
Query: 380 VDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLT 439
+++ + + + YY +T+ G + E ++ I L+
Sbjct: 16 ATPTSLLISWDASSSSVSYYRITYGETGGNSPVQEFTVPGSSS---------TATISGLS 66
Query: 440 PGVKYQFTIRTVSYNLESGVTS----LSART 466
PGV Y T+ + + ++ RT
Sbjct: 67 PGVDYTITVYAYYSYYDLYYSYSPSSINYRT 97
Score = 35.1 bits (81), Expect = 0.020
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 3/52 (5%)
Query: 142 KISYVEIETLNGDSNQMFV--DKTEYVLESLLPGRKYSINVQAVSNGMESPS 191
+I+Y E N + V + + L PG Y+I V A + +
Sbjct: 36 RITYGETGG-NSPVQEFTVPGSSSTATISGLSPGVDYTITVYAYYSYYDLYY 86
Score = 30.8 bits (70), Expect = 0.57
Identities = 16/67 (23%), Positives = 24/67 (35%), Gaps = 2/67 (2%)
Query: 205 LNISWKSDVNSRQDNFEVIYNR-NDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAIS 263
L ISW + +S + + Y TV + S + L PG Y+I V+A
Sbjct: 21 LLISWDA-SSSSVSYYRITYGETGGNSPVQEFTVPGSSSTATISGLSPGVDYTITVYAYY 79
Query: 264 HGLRSEP 270
Sbjct: 80 SYYDLYY 86
Score = 29.7 bits (67), Expect = 1.4
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 475 LVVNNQQSTDSVTLRYTPQNSNHFDFYR--FTLSEPDIPVIEKAANDTDRKVTFNNLTPG 532
L V T S+ + + +S+ +YR + + + PV E + T + L+PG
Sbjct: 11 LEVVAATPT-SLLISWDA-SSSSVSYYRITYGETGGNSPVQEFTVPGSSSTATISGLSPG 68
Query: 533 KLYNFTVWTV 542
Y TV+
Sbjct: 69 VDYTITVYAY 78
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 55.5 bits (134), Expect = 1e-09
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 9/90 (10%)
Query: 563 TRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEGF-LIQNLTLH---TSIVIGDLKPH 618
T + T +TDTS++++W P + + Y + G + LT+ TS+ I L P
Sbjct: 6 TDLQVTNVTDTSITVSWTPPSATITGYRITYTPSNGPGEPKELTVPPSSTSVTITGLTPG 65
Query: 619 RNYTFTVIVRSGTESSVLRRSLPVSAIFQT 648
Y +V + S P+ T
Sbjct: 66 VEYVVSVYALKDNQ-----ESPPLVGTQTT 90
Score = 47.4 bits (113), Expect = 8e-07
Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNV-GTSLEAEVTDM 339
PT+L + + ++ V W P +I T Y I Y + V +S +T +
Sbjct: 4 APTDLQVTNVTDTSITVSWTPPSATI-TGYRITYTPSNGPGEPKELTVPPSSTSVTITGL 62
Query: 340 VPGEKCMIQVNSVSYSVES 358
PG + ++ V ++ + ES
Sbjct: 63 TPGVEYVVSVYALKDNQES 81
Score = 41.3 bits (97), Expect = 1e-04
Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 9/87 (10%)
Query: 380 VDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLT 439
V +++T+ + P I Y +T+ EL + + I LT
Sbjct: 13 VTDTSITVSWTPPSATITGYRITYTPSNGPGEPKELTVPPSST---------SVTITGLT 63
Query: 440 PGVKYQFTIRTVSYNLESGVTSLSART 466
PGV+Y ++ + N ES + T
Sbjct: 64 PGVEYVVSVYALKDNQESPPLVGTQTT 90
Score = 36.6 bits (85), Expect = 0.005
Identities = 15/85 (17%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 187 MESPSFPIIEDLRPIEFGLNISWKSDVNSRQDNFEVIYNRNDTITEDP-ITVVTTDSKLL 245
+++P+ + ++ + +SW ++ + + Y ++ E +TV + + +
Sbjct: 2 LDAPTDLQVTNVTDTS--ITVSWTP-PSATITGYRITYTPSNGPGEPKELTVPPSSTSVT 58
Query: 246 LENLYPGAGYSIQVFAISHGLRSEP 270
+ L PG Y + V+A+ S P
Sbjct: 59 ITGLTPGVEYVVSVYALKDNQESPP 83
Score = 36.6 bits (85), Expect = 0.005
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 140 GSKISYVEIETLNGDSNQMFVD--KTEYVLESLLPGRKYSINVQAVSNGMESP 190
G +I+Y G+ ++ V T + L PG +Y ++V A+ + ESP
Sbjct: 31 GYRITYTPSNG-PGEPKELTVPPSSTSVTITGLTPGVEYVVSVYALKDNQESP 82
Score = 36.3 bits (84), Expect = 0.008
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 475 LVVNNQQSTDSVTLRYTPQNSNHFDFYR--FTLSEPDIPVIEKAANDTDRKVTFNNLTPG 532
L V N T S+T+ +TP ++ YR +T S E + VT LTPG
Sbjct: 8 LQVTNVTDT-SITVSWTPPSAT-ITGYRITYTPSNGPGEPKELTVPPSSTSVTITGLTPG 65
Query: 533 KLYNFTVWTVADGVLSTPI 551
Y +V+ + D S P+
Sbjct: 66 VEYVVSVYALKDNQESPPL 84
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 60.6 bits (146), Expect = 1e-09
Identities = 43/296 (14%), Positives = 76/296 (25%), Gaps = 43/296 (14%)
Query: 79 EPLPVLDLTAVMDDKTGDLFISWKP-----DNASYQDMYKISIKSI------LLEEEHQK 127
+ P D V G L++ W+P Y++ ++I + ++
Sbjct: 31 KVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETWKTIITKNLH 90
Query: 128 QFLMGFLGDCDNGSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGM 187
L + + + NG Q +T Y + ++ V
Sbjct: 91 YKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYYNW 150
Query: 188 ESPSFPIIEDLRPIEFGLNISWKSDVNSRQD-NFEVIYNRNDTITEDPITVVTTDSK--- 243
+ L SWK + D N+ + Y
Sbjct: 151 QY---------------LLCSWKPGIGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQNI 195
Query: 244 ---LLLENLYPGAGYSIQVFAISHGLRSEP----HDYFQAVYPKPPTNLTLEKTSSNAVL 296
+ I V S V P PP LT + SS +
Sbjct: 196 GCRFPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLPPVYLTFTRESSCEIK 255
Query: 297 VKWKEPVGSIFT---EYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQV 349
+KW P+G I +Y I R ++ + + + V
Sbjct: 256 LKWSIPLGPIPARCFDYEIEIREDDTTLVTATVE---NETYTLKTTNETRQLCFVV 308
Score = 48.3 bits (114), Expect = 1e-05
Identities = 21/151 (13%), Positives = 50/151 (33%), Gaps = 11/151 (7%)
Query: 489 RYTPQNSNHFDFYRFTLSEPDI---PVIEKAANDTDRKVTFNNLTPGKLYNFTVW--TVA 543
++N+ FY + + + I+ + + + + K + V +
Sbjct: 161 IGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSSEN 220
Query: 544 DGVLSTP--IQRHDRLYPEPITRINATEITDTSVSLTWDSPRGEYNA----FEVQYLNTE 597
+ S+ Q + + P P + T + + L W P G A +E++ +
Sbjct: 221 KPIRSSYFTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIREDD 280
Query: 598 GFLIQNLTLHTSIVIGDLKPHRNYTFTVIVR 628
L+ + + + R F V +
Sbjct: 281 TTLVTATVENETYTLKTTNETRQLCFVVRSK 311
Score = 43.3 bits (101), Expect = 4e-04
Identities = 34/289 (11%), Positives = 78/289 (26%), Gaps = 36/289 (12%)
Query: 277 VYPKPPTNLTLEKTSSNA-VLVKWKEPV-----GSIFTEYSIRYRTEEDKTWVRLPNVGT 330
+ PP + + + ++W+ P+ EY ++YR +TW +
Sbjct: 30 IKVNPPQDFEIVDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETW-KTIITKN 88
Query: 331 SLEAEVTDMVPGEKCMIQVNSVSYSVESAHPLQINHTISPNPATYVAALVDASNVTLEFP 390
+ D+ G + I + + + ++ +
Sbjct: 89 LHYKDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPETXVQDMDCVYY 148
Query: 391 RPEGRIEYYLVTWR--GIGPEATSTELFTKNVTNDPEDKDKHV----------HILIDQL 438
+Y L +W+ T+ LF D + +
Sbjct: 149 ----NWQYLLCSWKPGIGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEA 204
Query: 439 TPGVKYQFTIRTVSYNLESGVTSLSARTMPLIESE-----VLVVNNQQSTDSVTLRYTPQ 493
+ + + S E+ S T L V + ++S+ + L+++
Sbjct: 205 SDYKDFYICVNGSS---ENKPIRSSYFTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIP 261
Query: 494 NSNHFDF---YRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTV 539
Y + E D ++ + T + F V
Sbjct: 262 LGPIPARCFDYEIEIREDDTTLVTA--TVENETYTLKTTNETRQLCFVV 308
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 58.7 bits (141), Expect = 2e-09
Identities = 17/107 (15%), Positives = 42/107 (39%), Gaps = 13/107 (12%)
Query: 255 YSIQVFAISHGLRSEPHDYFQAVYPKPPTNLTLEKTSSNA------VLVKWKEPV----- 303
Y I++ + + + + V P PP L + + + V+W+ P
Sbjct: 107 YCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQ 166
Query: 304 -GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQV 349
G + EY ++Y+ + W ++ + + V + ++ ++V
Sbjct: 167 KGWMVLEYELQYKEVNETKW-KMMDPILTTSVPVYSLKVDKEYEVRV 212
Score = 39.8 bits (92), Expect = 0.003
Identities = 26/192 (13%), Positives = 47/192 (24%), Gaps = 29/192 (15%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV-------GSIFTEYSIRYRTEEDKTWVRLPNVGTS 331
P W + V G I Y+ R E + W P+ ++
Sbjct: 30 SGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRRNTQEWTQEWKECPDYVSA 89
Query: 332 LEAE----VTDMVPGEKCMIQVNSVSYSVESAHPLQINHTISPNPATYVAALVDASNVTL 387
E + I++ S +V+ ++ + P+P + N TL
Sbjct: 90 GENSCYFNSSFTSIAIPYCIKLTSNGGTVDE-KCFSVDEIVQPDPPIAL-------NWTL 141
Query: 388 EFPRPEGRIEYYLVTWRGIGPEATSTELFT----------KNVTNDPEDKDKHVHILIDQ 437
G V W D + +
Sbjct: 142 LNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPILTTSVPVYS 201
Query: 438 LTPGVKYQFTIR 449
L +Y+ +R
Sbjct: 202 LKVDKEYEVRVR 213
Score = 38.3 bits (88), Expect = 0.009
Identities = 20/116 (17%), Positives = 43/116 (37%), Gaps = 15/116 (12%)
Query: 525 TFNNLTPGKLYNFTVWTVADGVLSTPIQRHDRLYPEPITRINATEITDT------SVSLT 578
+ + Y + + V + + P+P +N T + + + +
Sbjct: 97 NSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVR 156
Query: 579 WDSPRGEYNA-------FEVQY--LNTEGFLIQNLTLHTSIVIGDLKPHRNYTFTV 625
W++PR +E+QY +N + + + L TS+ + LK + Y V
Sbjct: 157 WEAPRNADIQKGWMVLEYELQYKEVNETKWKMMDPILTTSVPVYSLKVDKEYEVRV 212
Score = 32.9 bits (74), Expect = 0.45
Identities = 13/117 (11%), Positives = 37/117 (31%), Gaps = 24/117 (20%)
Query: 172 PGRKYSINVQAVSNGMESPSFPIIEDLRPIEFG-----------------LNISWKSDVN 214
Y I + + ++ F + E ++P + + W++ N
Sbjct: 103 IAIPYCIKLTSNGGTVDEKCFSVDEIVQPDPPIALNWTLLNVSLTGIHADIQVRWEAPRN 162
Query: 215 SRQDN------FEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAISHG 265
+ +E+ Y + T+ + + + + +L Y ++V +
Sbjct: 163 ADIQKGWMVLEYELQYKEVNE-TKWKMMDPILTTSVPVYSLKVDKEYEVRVRSKQRN 218
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 55.8 bits (134), Expect = 2e-09
Identities = 16/105 (15%), Positives = 43/105 (40%), Gaps = 17/105 (16%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEGFLIQNLTLH----------- 607
+++++ T++T +S+ L W++P G +++F +++ ++
Sbjct: 9 RPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGT 68
Query: 608 -TSIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHES 651
S V+ DL+ Y+ T+ G ++ + +T
Sbjct: 69 RHSAVLRDLRSGTLYSLTLYGLRGP-----HKADSIQGTARTLSG 108
Score = 47.3 bits (112), Expect = 1e-06
Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 1/100 (1%)
Query: 369 SPNPATYVAALVDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKD 428
P + V S++ L + P G + +L+ + P
Sbjct: 9 RPRLSQLSVTDVTTSSLRLNWEAPPGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGT 68
Query: 429 KHVHILIDQLTPGVKYQFTIRTVSYNLESGVTSLSARTMP 468
+H ++ L G Y T+ + ++ +ART+
Sbjct: 69 RH-SAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTARTLS 107
Score = 40.3 bits (94), Expect = 4e-04
Identities = 14/105 (13%), Positives = 38/105 (36%), Gaps = 11/105 (10%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLE----- 333
+ L++ +++++ + W+ P G+ F + +R+ T P E
Sbjct: 9 RPRLSQLSVTDVTTSSLRLNWEAPPGA-FDSFLLRFGVPSPSTLEPHPRPLLQRELMVPG 67
Query: 334 ----AEVTDMVPGEKCMIQVNSVSYSVESAHPLQINHTISPNPAT 374
A + D+ G + + + ++ +Q P++
Sbjct: 68 TRHSAVLRDLRSGTLYSLTLYGLRGPHKAD-SIQGTARTLSGPSS 111
Score = 38.4 bits (89), Expect = 0.002
Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 11/90 (12%)
Query: 482 STDSVTLRYTPQNSNHFDFYRFTLSEPD----------IPVIEKAANDTDRKVTFNNLTP 531
+T S+ L + FD + P + E T +L
Sbjct: 21 TTSSLRLNWEAP-PGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRS 79
Query: 532 GKLYNFTVWTVADGVLSTPIQRHDRLYPEP 561
G LY+ T++ + + IQ R P
Sbjct: 80 GTLYSLTLYGLRGPHKADSIQGTARTLSGP 109
Score = 36.5 bits (84), Expect = 0.009
Identities = 17/116 (14%), Positives = 34/116 (29%), Gaps = 31/116 (26%)
Query: 78 PEPLPVLDLTAVMDDKTGDLFISWKPDNASYQDMYKISIKSILLEEEHQKQFLMGFLGDC 137
L V D+T L ++W+ ++ D + +
Sbjct: 12 LSQLSVTDVTTSS------LRLNWEAPPGAF-DSFLLRFGVP------------------ 46
Query: 138 DNGSKISYVEIETLNGDSNQMFV--DKTEYVLESLLPGRKYSINVQAVSNGMESPS 191
S +E ++ V + VL L G YS+ + + ++ S
Sbjct: 47 ----SPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADS 98
Score = 35.0 bits (80), Expect = 0.028
Identities = 13/76 (17%), Positives = 31/76 (40%), Gaps = 10/76 (13%)
Query: 204 GLNISWKSDVNSRQDNFEVIYNRNDTITEDP---------ITVVTTDSKLLLENLYPGAG 254
L ++W++ D+F + + T +P + V T +L +L G
Sbjct: 24 SLRLNWEAP-PGAFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDLRSGTL 82
Query: 255 YSIQVFAISHGLRSEP 270
YS+ ++ + +++
Sbjct: 83 YSLTLYGLRGPHKADS 98
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 54.4 bits (131), Expect = 3e-09
Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 6/99 (6%)
Query: 275 QAVYPKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKTWVRLPNV-GTS 331
+ PT L + + ++ + W Y I Y + V+ V G
Sbjct: 4 GSSVSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYY 63
Query: 332 LEAEVTDMVPGEKCMIQV---NSVSYSVESAHPLQINHT 367
A ++ + PG I V ++ E P+ IN+
Sbjct: 64 STATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYR 102
Score = 52.5 bits (126), Expect = 2e-08
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 8/97 (8%)
Query: 559 PEPITRINATEITDTSVSLTWDSPR---GEYNAFEVQYLNTEG-FLIQNLTL---HTSIV 611
T++ + T TS+ ++WD+ + + Y T G +Q T+ +++
Sbjct: 8 SSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYYSTAT 67
Query: 612 IGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQT 648
I LKP +YT TV + P+S ++T
Sbjct: 68 ISGLKPGVDYTITVYAYDTFFPGYE-PNSPISINYRT 103
Score = 37.0 bits (86), Expect = 0.005
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 13/81 (16%)
Query: 390 PRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIR 449
++YY +T+ G ++ E + I L PGV Y T+
Sbjct: 32 YSSWQNVKYYRITYGETGGDSPVQEFTVPGYYS---------TATISGLKPGVDYTITVY 82
Query: 450 TVSYN----LESGVTSLSART 466
+ S++ RT
Sbjct: 83 AYDTFFPGYEPNSPISINYRT 103
Score = 34.3 bits (79), Expect = 0.044
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 5/58 (8%)
Query: 142 KISYVEIETLNGDSNQMFV--DKTEYVLESLLPGRKYSINVQAVSNGMESP--SFPII 195
+I+Y E + + V + + L PG Y+I V A + PI
Sbjct: 42 RITYGETGG-DSPVQEFTVPGYYSTATISGLKPGVDYTITVYAYDTFFPGYEPNSPIS 98
Score = 31.7 bits (72), Expect = 0.34
Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 475 LVVNNQQSTDSVTLRYTP--QNSNHFDFYR--FTLSEPDIPVIEKAANDTDRKVTFNNLT 530
L V + T S+ + + + + +YR + + D PV E T + L
Sbjct: 14 LEVVDATPT-SLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYYSTATISGLK 72
Query: 531 PGKLYNFTVW 540
PG Y TV+
Sbjct: 73 PGVDYTITVY 82
Score = 30.9 bits (70), Expect = 0.65
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 3/61 (4%)
Query: 205 LNISWK--SDVNSRQDNFEVIYNRNDTITED-PITVVTTDSKLLLENLYPGAGYSIQVFA 261
L ISW + + Y + TV S + L PG Y+I V+A
Sbjct: 24 LKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYYSTATISGLKPGVDYTITVYA 83
Query: 262 I 262
Sbjct: 84 Y 84
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 54.2 bits (131), Expect = 4e-09
Identities = 14/64 (21%), Positives = 28/64 (43%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTD 338
PKPP +L + +T++ +V + W T Y I+YR + + + + +
Sbjct: 8 PKPPIDLVVTETTATSVTLTWDSGNSEPVTYYGIQYRAAGTEGPFQEVDGVATTRYSIGG 67
Query: 339 MVPG 342
+ P
Sbjct: 68 LSPF 71
Score = 43.4 bits (103), Expect = 2e-05
Identities = 25/75 (33%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRG----EYNAFEVQY---LNTEGFLIQNLTLHTSIV 611
P+P + TE T TSV+LTWDS Y +QY F + T
Sbjct: 8 PKPPIDLVVTETTATSVTLTWDSGNSEPVTYYG---IQYRAAGTEGPFQEVDGVATTRYS 64
Query: 612 IGDLKPHRNYTFTVI 626
IG L P Y F V+
Sbjct: 65 IGGLSPFSEYAFRVL 79
Score = 30.0 bits (68), Expect = 1.2
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 6/63 (9%)
Query: 138 DNGSKISYVEIETLNGDSNQMF-----VDKTEYVLESLLPGRKYSINVQAV-SNGMESPS 191
N ++Y I+ + F V T Y + L P +Y+ V AV S G PS
Sbjct: 31 GNSEPVTYYGIQYRAAGTEGPFQEVDGVATTRYSIGGLSPFSEYAFRVLAVNSIGRGPPS 90
Query: 192 FPI 194
+
Sbjct: 91 EAV 93
Score = 30.0 bits (68), Expect = 1.4
Identities = 20/91 (21%), Positives = 34/91 (37%), Gaps = 7/91 (7%)
Query: 184 SNGMESPSFPIIEDLRPIEFG---LNISWKSDVNSRQDNFEVIYNRNDTITEDPITVVTT 240
S+G P P DL E + ++W S + + + Y T
Sbjct: 2 SSGSSGPKPP--IDLVVTETTATSVTLTWDSGNSEPVTYYGIQYRAAGTEGPFQEVDGVA 59
Query: 241 DSKLLLENLYPGAGYSIQVFAI-SHGLRSEP 270
++ + L P + Y+ +V A+ S G R P
Sbjct: 60 TTRYSIGGLSPFSEYAFRVLAVNSIG-RGPP 89
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 56.8 bits (136), Expect = 6e-09
Identities = 26/190 (13%), Positives = 56/190 (29%), Gaps = 14/190 (7%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEP--VGSIFTEYSIRYRTEEDKTWVRLPNVG--TSLEA 334
P N+T + VL +W P + + Y+++Y K W+
Sbjct: 9 LPKPANITFLSINMKNVL-QWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSECRNINRTYC 67
Query: 335 EVTD--MVPGEKCMIQVNSVSYSVESAH-----PLQINHTISPNPATYVAALVDASNVTL 387
+++ + +V ++ + S T P + + +V L
Sbjct: 68 DLSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVL 127
Query: 388 EFPR-PEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVH-ILIDQLTPGVKYQ 445
P + E V+ + I +N + H +++ L P Y
Sbjct: 128 TAPEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYC 187
Query: 446 FTIRTVSYNL 455
+ +
Sbjct: 188 VHVESFVPGP 197
Score = 33.7 bits (76), Expect = 0.25
Identities = 19/136 (13%), Positives = 37/136 (27%), Gaps = 32/136 (23%)
Query: 168 ESLLPGRKYSINVQAVSNGMESPSFPIIE--------------DLRPIEFGLNISWK--- 210
E+ +Y V+A+ S L E +++
Sbjct: 72 ETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLTAPE 131
Query: 211 ---SDVNSRQDNFEVIYN-------RNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVF 260
+ + + IY+ +T + + T+ L+L L P Y + V
Sbjct: 132 KWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCVHVE 191
Query: 261 AIS-----HGLRSEPH 271
+ SE
Sbjct: 192 SFVPGPPRRAQPSEKQ 207
Score = 31.4 bits (70), Expect = 1.5
Identities = 27/181 (14%), Positives = 54/181 (29%), Gaps = 26/181 (14%)
Query: 384 NVTLEFPRPE---GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTP 440
L++ PE G Y V + G + + +N+ + + +
Sbjct: 23 KNVLQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSECRNIN------RTYCDLSAETSDY 76
Query: 441 GVKYQFTIRTVSYNLESGVTSLSARTMPLIESEVLV--VNNQQSTDSVTLRYTPQNSNHF 498
+Y +R + S + S R P +E+++ V S+++ T
Sbjct: 77 EHQYYARVRAIWGTKCS-KWAESGRFYPFLETQIGPPEVALTTDEKSISVVLTAPEKWKR 135
Query: 499 DFYRFTLSEPDIPVI--------------EKAANDTDRKVTFNNLTPGKLYNFTVWTVAD 544
+ +S I + T+ + L P LY V +
Sbjct: 136 NPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCVHVESFVP 195
Query: 545 G 545
G
Sbjct: 196 G 196
Score = 29.8 bits (66), Expect = 4.4
Identities = 16/122 (13%), Positives = 34/122 (27%), Gaps = 20/122 (16%)
Query: 524 VTFNNLTPGKLYNFTVWTVADGVLSTPIQRHDRLYPEPITR---INATEITDTSVSLTWD 580
++ Y V + S + A + S+S+
Sbjct: 69 LSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLT 128
Query: 581 SPRGEYNA----------------FEVQYLNTEGFLIQNLTL-HTSIVIGDLKPHRNYTF 623
+P + V LNT+ + + + ++V+ L+P+ Y
Sbjct: 129 APEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCV 188
Query: 624 TV 625
V
Sbjct: 189 HV 190
Score = 29.1 bits (64), Expect = 7.6
Identities = 8/36 (22%), Positives = 13/36 (36%)
Query: 156 NQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESPS 191
V VL L P Y ++V++ G +
Sbjct: 166 WSQCVTNHTLVLTWLEPNTLYCVHVESFVPGPPRRA 201
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 53.7 bits (129), Expect = 7e-09
Identities = 20/95 (21%), Positives = 29/95 (30%), Gaps = 4/95 (4%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNV-GTSLEAEVT 337
PP LTL + V + W+ G T Y +R K V E +
Sbjct: 9 LPPPRALTLAAVTPRTVHLTWQPSAG--ATHYLVRCSPASPKGEEEEREVQVGRPEVLLD 66
Query: 338 DMVPGEKCMIQVNSVSYSVESAHPLQINHTISPNP 372
+ PG + V S+ S I +
Sbjct: 67 GLEPGRDYEVSVQSLRGPEGSE-ARGIRARTPTSG 100
Score = 50.2 bits (120), Expect = 1e-07
Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 10/99 (10%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNT-EGFLIQNLTLH---TSIVIGD 614
P + +T +V LTW G + V+ + + +++
Sbjct: 9 LPPPRALTLAAVTPRTVHLTWQPSAGA-THYLVRCSPASPKGEEEEREVQVGRPEVLLDG 67
Query: 615 LKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLP 653
L+P R+Y +V G E S +T S P
Sbjct: 68 LEPGRDYEVSVQSLRGPEGSE-----ARGIRARTPTSGP 101
Score = 43.3 bits (102), Expect = 3e-05
Identities = 14/81 (17%), Positives = 34/81 (41%), Gaps = 3/81 (3%)
Query: 205 LNISWKSDVNSRQDNFEVIYN-RNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAIS 263
++++W+ ++ ++ V + + E+ V ++LL+ L PG Y + V ++
Sbjct: 25 VHLTWQP--SAGATHYLVRCSPASPKGEEEEREVQVGRPEVLLDGLEPGRDYEVSVQSLR 82
Query: 264 HGLRSEPHDYFQAVYPKPPTN 284
SE P++
Sbjct: 83 GPEGSEARGIRARTPTSGPSS 103
Score = 42.9 bits (101), Expect = 4e-05
Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 10/90 (11%)
Query: 380 VDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLT 439
V V L + +P +YLV P+ E + +L+D L
Sbjct: 20 VTPRTVHLTW-QPSAGATHYLVRCSPASPKGEEEEREVQVGRP---------EVLLDGLE 69
Query: 440 PGVKYQFTIRTVSYNLESGVTSLSARTMPL 469
PG Y+ +++++ S + ART
Sbjct: 70 PGRDYEVSVQSLRGPEGSEARGIRARTPTS 99
Score = 41.4 bits (97), Expect = 1e-04
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 5/101 (4%)
Query: 463 SARTMPLIESEVLVVNNQQSTDSVTLRYTPQNSNHFDFYR--FTLSEPDIPVIEKAANDT 520
S + PL L + + +V L + P S Y + + P E+
Sbjct: 3 SGSSGPLPPPRALTLAAV-TPRTVHLTWQP--SAGATHYLVRCSPASPKGEEEEREVQVG 59
Query: 521 DRKVTFNNLTPGKLYNFTVWTVADGVLSTPIQRHDRLYPEP 561
+V + L PG+ Y +V ++ S R
Sbjct: 60 RPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSG 100
Score = 40.2 bits (94), Expect = 4e-04
Identities = 12/56 (21%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 142 KISYVEIETLNG-DSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESPSFPIIE 196
+ + ++ V + E +L+ L PGR Y ++VQ++ S + I
Sbjct: 39 LVRCSPASPKGEEEEREVQVGRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRA 94
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 54.0 bits (130), Expect = 7e-09
Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 5/100 (5%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPVG-SIFTEYSIRYRTEEDKTWVRL-PNVGTSLEAEV 336
P PT L ++ V W+EP YS+ Y+ RL V
Sbjct: 18 PDTPTRLVFSALGPTSLRVSWQEPRCERPLQGYSVEYQLLNGGELHRLNIPNPAQTSVVV 77
Query: 337 TDMVPGEKCMIQV---NSVSYSVESAHPLQINHTISPNPA 373
D++P + +V + + E + I +S +
Sbjct: 78 EDLLPNHSYVFRVRAQSQEGWGREREGVITIESQVSGPSS 117
Score = 45.9 bits (109), Expect = 5e-06
Identities = 23/89 (25%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
Query: 544 DGVLSTPIQRHDRL-YPEPITRINATEITDTSVSLTWDSPR--GEYNAFEVQY--LNTEG 598
S P+ TR+ + + TS+ ++W PR + V+Y LN
Sbjct: 2 SSGSSGSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCERPLQGYSVEYQLLNGGE 61
Query: 599 FLIQNLTL--HTSIVIGDLKPHRNYTFTV 625
N+ TS+V+ DL P+ +Y F V
Sbjct: 62 LHRLNIPNPAQTSVVVEDLLPNHSYVFRV 90
Score = 33.2 bits (76), Expect = 0.11
Identities = 17/56 (30%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 145 YVEIETLNGDS----NQMFVDKTEYVLESLLPGRKYSINVQAV-SNGMESPSFPII 195
VE + LNG N +T V+E LLP Y V+A G +I
Sbjct: 51 SVEYQLLNGGELHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREGVI 106
Score = 33.2 bits (76), Expect = 0.14
Identities = 15/76 (19%), Positives = 33/76 (43%), Gaps = 11/76 (14%)
Query: 376 VAALVDASNVTLEF--PRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHI 433
V + + +++ + + PR E ++ Y V ++ EL N+ N + +
Sbjct: 25 VFSALGPTSLRVSWQEPRCERPLQGYSVEYQ----LLNGGELHRLNIPNPAQ-----TSV 75
Query: 434 LIDQLTPGVKYQFTIR 449
+++ L P Y F +R
Sbjct: 76 VVEDLLPNHSYVFRVR 91
Score = 32.0 bits (73), Expect = 0.34
Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 7/99 (7%)
Query: 190 PSFPIIEDLRPIEFGLNISWKS-DVNSRQDNFEVIYNRNDTITEDPITVVTTDS-KLLLE 247
P+ + L P L +SW+ + V Y + + + +++E
Sbjct: 21 PTRLVFSALGP--TSLRVSWQEPRCERPLQGYSVEYQLLNGGELHRLNIPNPAQTSVVVE 78
Query: 248 NLYPGAGYSIQVFAISH---GLRSEPHDYFQAVYPKPPT 283
+L P Y +V A S G E ++ P +
Sbjct: 79 DLLPNHSYVFRVRAQSQEGWGREREGVITIESQVSGPSS 117
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 56.5 bits (135), Expect = 8e-09
Identities = 34/208 (16%), Positives = 56/208 (26%), Gaps = 20/208 (9%)
Query: 442 VKYQFTIRTVSYNLESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQNSNHFDFY 501
V + L + T+ + S D V +
Sbjct: 26 VGENIEVGVGIDELVNAEAFAYDFTLNY-DENAFEYVEAISDDGVFVNAKKIEDGK---V 81
Query: 502 RFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLST------------ 549
R +S + + T G + T +V DG
Sbjct: 82 RVLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNI 141
Query: 550 PIQRHDRLYPEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEGFLIQNLTLH-T 608
+ P+ A+EI +V++TW P E L +G + + T
Sbjct: 142 IEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETT-EGLEGYILYKDGKKVAEIGKDET 200
Query: 609 SIVIGDLKPHRNYTFTVIVR--SGTESS 634
S L H Y F + + +G SS
Sbjct: 201 SYTFKKLNRHTIYNFKIAAKYSNGEVSS 228
Score = 37.2 bits (85), Expect = 0.020
Identities = 33/226 (14%), Positives = 59/226 (26%), Gaps = 27/226 (11%)
Query: 253 AGYSIQVFAISHGLRSEPHDYFQAVYPKPPTNLTLEK-TSSNAVLVKWKEP---VGSIFT 308
G +I+V L + + + S + V V K+ +
Sbjct: 26 VGENIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVEAISDDGVFVNAKKIEDGKVRVLV 85
Query: 309 EYSIRYRTEEDKTWVRLPNVGTSLEA----EVTDMVPGEKCMIQVNSVSYSVESAHPLQI 364
+ ++ + VT+ G+ +
Sbjct: 86 SSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNIIEGT 145
Query: 365 NHTISPNPATYVAAL-VDASNVTLEFPRPE--GRIEYYLVTWRGIGPEATSTELFTKNVT 421
+ I NP A ++ NVT+ + PE +E Y++ G + +
Sbjct: 146 SPEIVVNPVRDFKASEINKKNVTVTWTEPETTEGLEGYILYKDGKKVAEIGKDETSYTFK 205
Query: 422 NDPEDKDKHVHILIDQLTPGVKYQFTIRTV-SYNLESGVTSLSART 466
L Y F I S S SL+ RT
Sbjct: 206 K---------------LNRHTIYNFKIAAKYSNGEVSSKESLTLRT 236
Score = 31.8 bits (71), Expect = 0.93
Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 1/50 (2%)
Query: 143 ISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAV-SNGMESPS 191
+ + ++ D+T Y + L Y+ + A SNG S
Sbjct: 180 LEGYILYKDGKKVAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSK 229
Score = 29.1 bits (64), Expect = 7.0
Identities = 12/104 (11%), Positives = 30/104 (28%), Gaps = 5/104 (4%)
Query: 239 TTDSKLLLENLYPGAGYSIQVFAISHGLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVLVK 298
++ + ++ G G ++ A + + + P + + + V V
Sbjct: 112 GSNLSVTNSSVGDGEGLVHEI-AGTEKTVNIIEGTSPEIVVNPVRDFKASEINKKNVTVT 170
Query: 299 WKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPG 342
W EP + E I Y+ + + +
Sbjct: 171 WTEPETTEGLEGYILYKDGKKVAEI----GKDETSYTFKKLNRH 210
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 55.6 bits (133), Expect = 1e-08
Identities = 26/187 (13%), Positives = 51/187 (27%), Gaps = 14/187 (7%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKTWVRLPNVG--TSLEA 334
P + + + + +L +W+ + Y ++Y+ + W + L
Sbjct: 8 SLKPQRVQFQSRNFHNIL-QWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQELSC 66
Query: 335 EVTD--MVPGEKCMIQVNSVSYSVESAH-----PLQINHTISPNPATYVAALVDASNVTL 387
++T E +V + S S T P + + + V L
Sbjct: 67 DLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSLLVIL 126
Query: 388 EFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPED--KDKHVHILIDQLTPGVKYQ 445
P R + E N + + H + I+ LTP Y
Sbjct: 127 HAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEGAHRAVEIEALTPHSSYC 186
Query: 446 FTIRTVS 452
Sbjct: 187 VVAEIYQ 193
Score = 37.8 bits (87), Expect = 0.009
Identities = 20/136 (14%), Positives = 39/136 (28%), Gaps = 32/136 (23%)
Query: 168 ESLLPGRKYSINVQAVSNGMESPSFPIIE--------------DLRPIEFGLNISWK--- 210
E+ Y V+A S G S ++ + L +
Sbjct: 71 ETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSLLVILHAPN 130
Query: 211 -------SDVNSRQDNFEVIYN---RNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVF 260
S +D +E++Y N+++ ++ + +E L P + Y +
Sbjct: 131 LPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEGAHRAVEIEALTPHSSYCVVAE 190
Query: 261 AIS-----HGLRSEPH 271
RSE
Sbjct: 191 IYQPMLDRRSQRSEER 206
Score = 34.0 bits (77), Expect = 0.18
Identities = 26/172 (15%), Positives = 48/172 (27%), Gaps = 23/172 (13%)
Query: 390 PRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIR 449
G Y V ++ G + + + + Y +R
Sbjct: 31 RALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQ------ELSCDLTSETSDIQEPYYGRVR 84
Query: 450 TVSYNLESGVTSLSARTMPLIESEVL--VVNNQQSTDSVTLRYTPQNS------------ 495
S S S++ R P E+++ V+N Q S+ + N
Sbjct: 85 AASAGSYS-EWSMTPRFTPWWETKIDPPVMNITQVNGSLLVILHAPNLPYRYQKEKNVSI 143
Query: 496 -NHFDF-YRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVADG 545
++++ YR + + +K R V LTP Y
Sbjct: 144 EDYYELLYRVFIINNSLEKEQKVYEGAHRAVEIEALTPHSSYCVVAEIYQPM 195
Score = 30.9 bits (69), Expect = 1.9
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 160 VDKTEYVLESLLPGRKYSINVQAVSNGMESPS 191
+E+L P Y + + ++ S
Sbjct: 169 GAHRAVEIEALTPHSSYCVVAEIYQPMLDRRS 200
Score = 30.5 bits (68), Expect = 2.5
Identities = 21/123 (17%), Positives = 37/123 (30%), Gaps = 22/123 (17%)
Query: 524 VTFNNLTPGKLYNFTVWTVADGVLSTPIQRHDRLYPEPITRINATEIT----DTSVSLTW 579
+T + Y V + G S R P T+I+ + + S+ +
Sbjct: 68 LTSETSDIQEPYYGRVRAASAGSYS-EWSMTPRFTPWWETKIDPPVMNITQVNGSLLVIL 126
Query: 580 DSPRGEYNA---------------FEVQYLNTEGFLIQNL--TLHTSIVIGDLKPHRNYT 622
+P Y + V +N Q + H ++ I L PH +Y
Sbjct: 127 HAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEGAHRAVEIEALTPHSSYC 186
Query: 623 FTV 625
Sbjct: 187 VVA 189
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 55.1 bits (132), Expect = 2e-08
Identities = 26/167 (15%), Positives = 60/167 (35%), Gaps = 22/167 (13%)
Query: 205 LNISWK--SDVNSRQDNFEVIYNRNDTITEDPITVVTT------------DSKLLLENLY 250
+ W + + + ++ Y+R+ D ++ + + + ++
Sbjct: 18 MTCRWSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIF 77
Query: 251 PGAGYSIQVFAISHG--LRSEPH--DYFQAVYPKPPTNLTLEKTSSNAVL-VKWKEPV-G 304
+GY++ + L S P V P PP+++ E T + +L + W++PV
Sbjct: 78 LLSGYTMWIRINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFP 137
Query: 305 SIFTEYSIRYRTEEDKTWVRLPNV--GTSLEAEVTDMVPGEKCMIQV 349
++ IRY + ++ V S + +QV
Sbjct: 138 ENNLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQV 184
Score = 34.7 bits (79), Expect = 0.12
Identities = 16/114 (14%), Positives = 37/114 (32%), Gaps = 12/114 (10%)
Query: 524 VTFNNLTPGKLYNFTVWTV-ADGVLSTP---IQRHDRLYPEPITRINATEITDTS-VSLT 578
F + Y + + G L +P + + P P + + A + + ++
Sbjct: 71 CIFQPIFLLSGYTMWIRINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLKIS 130
Query: 579 WDSPRGEYNA--FEVQY---LNTEGFLIQNL--TLHTSIVIGDLKPHRNYTFTV 625
W+ P N F+++Y + + + S+ + Y V
Sbjct: 131 WEKPVFPENNLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQV 184
Score = 28.9 bits (64), Expect = 7.8
Identities = 17/104 (16%), Positives = 30/104 (28%), Gaps = 28/104 (26%)
Query: 80 PLPVLDLTAVMDDKTGDLFISWK-PDNASYQDMYKISIKSILLEEEHQKQFLMGFLGDCD 138
PLP + A + G L ISW+ P ++I
Sbjct: 110 PLPPSSVKAEITINIGLLKISWEKPVFPENNLQFQIRYGL-------------------- 149
Query: 139 NGSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQA 182
+G ++ + E + S L Y++ V+
Sbjct: 150 SGKEVQWKMYEVYDAKS-------KSVSLPVPDLCAVYAVQVRC 186
Score = 28.9 bits (64), Expect = 8.2
Identities = 19/129 (14%), Positives = 38/129 (29%), Gaps = 22/129 (17%)
Query: 163 TEYVLESLLPGRKYSINVQAVSNGMESPSFPIIEDLRPI----------------EFGLN 206
E + + + Y++ ++ + S P + L
Sbjct: 69 YECIFQPIFLLSGYTMWIRINHSLGSLDSPPTCVLPDSVVKPLPPSSVKAEITINIGLLK 128
Query: 207 ISWKSDVNSRQD-NFEVIYNRNDTITEDPITVV--TTDSKLLLENLYPGAGYSIQVFAIS 263
ISW+ V + F++ Y + + + V + L A Y++QV
Sbjct: 129 ISWEKPVFPENNLQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLPVPDLCAVYAVQVRCKR 188
Query: 264 ---HGLRSE 269
G S
Sbjct: 189 LDGLGYWSN 197
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 52.3 bits (125), Expect = 2e-08
Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 11/87 (12%)
Query: 270 PHDYFQAVYPKPPTNLTLEKTSSNA--VLVKWKEPV-----GSIFTEYSIRYRTEEDKTW 322
P V P PP N+ SN + V W+ P S ++ +RYR W
Sbjct: 2 PLGS---VKPDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQW 58
Query: 323 VRLPNVGTSLEAEVTDMVPGEKCMIQV 349
+ + +TD G++ +IQV
Sbjct: 59 -QHVELSNGTAHTITDAYAGKEYIIQV 84
Score = 35.7 bits (82), Expect = 0.017
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 10/77 (12%)
Query: 559 PEP--ITRINATEITDTSVSLTWDSPRGEYNA------FEVQY--LNTEGFLIQNLTLHT 608
P+P + +TW +P + F ++Y L + + L+ T
Sbjct: 8 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGT 67
Query: 609 SIVIGDLKPHRNYTFTV 625
+ I D + Y V
Sbjct: 68 AHTITDAYAGKEYIIQV 84
Score = 30.0 bits (67), Expect = 1.7
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 155 SNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESPS 191
+ + T + + G++Y I V A N + + S
Sbjct: 59 QHVELSNGTAHTITDAYAGKEYIIQVAAKDNEIGTWS 95
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 52.8 bits (127), Expect = 2e-08
Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTWVRLP-NVGTSLEA 334
P P ++ S+ + + W+ P YS+ Y E + ++
Sbjct: 18 PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQV 77
Query: 335 EVTDMVPGEKCMIQV---NSVSYSVESAHPLQI 364
+ +++P + +V N ES+ PL++
Sbjct: 78 TIQNLMPATVYIFRVMAQNKHGSG-ESSAPLRV 109
Score = 45.9 bits (109), Expect = 6e-06
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNA----FEVQY----LNTEGFLIQNLTLHTSI 610
P + A+ ++ + LTW +P + + + V Y + E + +
Sbjct: 18 PSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQV 77
Query: 611 VIGDLKPHRNYTFTVI 626
I +L P Y F V+
Sbjct: 78 TIQNLMPATVYIFRVM 93
Score = 34.7 bits (80), Expect = 0.038
Identities = 15/73 (20%), Positives = 28/73 (38%), Gaps = 7/73 (9%)
Query: 205 LNISWK---SDVNSRQDNFEVIYNRNDTITEDPITVVTTDS-KLLLENLYPGAGYSIQVF 260
+ ++W+ SD + + V Y + E ++ ++NL P Y +V
Sbjct: 34 IKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVM 93
Query: 261 AIS---HGLRSEP 270
A + G S P
Sbjct: 94 AQNKHGSGESSAP 106
Score = 33.9 bits (78), Expect = 0.083
Identities = 12/62 (19%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 139 NGSKISY-VEIETLNGDS----NQMFVDKTEYVLESLLPGRKYSINVQAV-SNGMESPSF 192
+G ++Y V N + + +++L+P Y V A +G S
Sbjct: 46 HGDNLTYSVFYTKEGIARERVENTSHPGEMQVTIQNLMPATVYIFRVMAQNKHGSGESSA 105
Query: 193 PI 194
P+
Sbjct: 106 PL 107
Score = 28.9 bits (65), Expect = 4.1
Identities = 16/121 (13%), Positives = 31/121 (25%), Gaps = 40/121 (33%)
Query: 803 APPRPSSQVVPTEVCRTSTTIQIRFRKNYFSEKNGAIIYYTVIVAEDDSKNSSGLEMPSW 862
P VV + V ++ I++ +R S+ +G + Y+V ++
Sbjct: 16 PLPSAPRDVVASLV--STRFIKLTWRTPA-SDPHGDNLTYSVFYTKEGIAR--------- 63
Query: 863 RDVQAYSVWPPYQVLEPFQFFKNMSVEDFTIGEESCEGKTGYCNGPLKSGSTYKVKIRAF 922
P TI L + Y ++ A
Sbjct: 64 --------ERVENTSHP-------GEMQVTIQN-------------LMPATVYIFRVMAQ 95
Query: 923 T 923
Sbjct: 96 N 96
Score = 28.5 bits (64), Expect = 4.6
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 16/83 (19%)
Query: 482 STDSVTLRYTP----QNSNHFD---FYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKL 534
ST + L + + ++ FY + + +VT NL P +
Sbjct: 30 STRFIKLTWRTPASDPHGDNLTYSVFYTKEGIARERVENTSHPGEM--QVTIQNLMPATV 87
Query: 535 YNFTVWTVA-----DGVLSTPIQ 552
Y F V +A G S P++
Sbjct: 88 YIFRV--MAQNKHGSGESSAPLR 108
Score = 28.1 bits (63), Expect = 6.2
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 13/78 (16%)
Query: 376 VAALVDASNVTLEFPRPE----GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHV 431
VA+LV + L + P G Y V + + +N ++ E
Sbjct: 25 VASLVSTRFIKLTWRTPASDPHGDNLTYSVFYT----KEGIARERVENTSHPGEM----- 75
Query: 432 HILIDQLTPGVKYQFTIR 449
+ I L P Y F +
Sbjct: 76 QVTIQNLMPATVYIFRVM 93
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 52.3 bits (126), Expect = 2e-08
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 1/71 (1%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTD 338
P P N E S ++L+ W P Y + Y+ E R+ + +
Sbjct: 18 PGQPLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRI-TIEPGTSYRLQG 76
Query: 339 MVPGEKCMIQV 349
+ P ++
Sbjct: 77 LKPNSLYYFRL 87
Score = 50.4 bits (121), Expect = 1e-07
Identities = 23/86 (26%), Positives = 36/86 (41%), Gaps = 4/86 (4%)
Query: 544 DGVLSTPIQRHDRLY-PEPITRINATEITDTSVSLTWDSPR-GEYNAFEVQYLNTEGFLI 601
S IQ + P A ++TS+ L+W PR +E+ Y + E
Sbjct: 2 SSGSSGDIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGEHGEE 61
Query: 602 QNLTL--HTSIVIGDLKPHRNYTFTV 625
Q +T+ TS + LKP+ Y F +
Sbjct: 62 QRITIEPGTSYRLQGLKPNSLYYFRL 87
Score = 34.6 bits (80), Expect = 0.034
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Query: 207 ISWKSDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAIS--- 263
+SW + N+E++Y + E IT+ S L+ L P + Y ++ A S
Sbjct: 36 LSWTPPRSDTIANYELVYKDGEHGEEQRITIEPGTS-YRLQGLKPNSLYYFRLAARSPQG 94
Query: 264 HGLRSEPHDYFQAVYPKPPTN 284
G + + + P++
Sbjct: 95 LGASTAE-ISARTMQSSGPSS 114
Score = 33.1 bits (76), Expect = 0.14
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 2/54 (3%)
Query: 142 KISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAV-SNGMESPSFPI 194
++ Y + E + T Y L+ L P Y + A G+ + + I
Sbjct: 50 ELVYKDGEH-GEEQRITIEPGTSYRLQGLKPNSLYYFRLAARSPQGLGASTAEI 102
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 52.4 bits (126), Expect = 2e-08
Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDK--TWVRLPNVGTSLEAEVTD 338
PT + ++ SS+ + V W+ + I Y IRY DK R+ A + +
Sbjct: 21 APTEVGVKVLSSSEISVHWEHVLEKIVESYQIRYWAAHDKEEAANRVQVTSQEYSARLEN 80
Query: 339 MVPGEKCMIQV---NSVSYSVESA 359
++P + I+V NS S
Sbjct: 81 LLPDTQYFIEVGACNSAGCGPPSD 104
Score = 40.4 bits (95), Expect = 4e-04
Identities = 10/95 (10%), Positives = 32/95 (33%), Gaps = 10/95 (10%)
Query: 565 INATEITDTSVSLTWDSP-RGEYNAFEVQY--LNTEGFLIQNLTLH---TSIVIGDLKPH 618
+ ++ + +S+ W+ +++++Y + + + + S + +L P
Sbjct: 25 VGVKVLSSSEISVHWEHVLEKIVESYQIRYWAAHDKEEAANRVQVTSQEYSARLENLLPD 84
Query: 619 RNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLP 653
Y V + S + T ++
Sbjct: 85 TQYFIEVGACNSAGCGP--PSDMIE--AFTKKASG 115
Score = 33.5 bits (77), Expect = 0.095
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 5/71 (7%)
Query: 205 LNISWKSDVNSRQDNFEVIYNRNDTITEDP--ITVVTTDSKLLLENLYPGAGYSIQVFAI 262
+++ W+ + +++++ Y E + V + + LENL P Y I+V A
Sbjct: 35 ISVHWEHVLEKIVESYQIRYWAAHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGAC 94
Query: 263 S---HGLRSEP 270
+ G S+
Sbjct: 95 NSAGCGPPSDM 105
Score = 30.8 bits (70), Expect = 0.87
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Query: 142 KISYVEIETLNGDSNQMFV--DKTEYVLESLLPGRKYSINVQAV-SNGMESPSFPI 194
+I Y +N++ V + LE+LLP +Y I V A S G PS I
Sbjct: 51 QIRYWAAHDKEEAANRVQVTSQEYSARLENLLPDTQYFIEVGACNSAGCGPPSDMI 106
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 51.9 bits (125), Expect = 3e-08
Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 7/85 (8%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEV 336
P P NL TS ++L+ W+ P Y + + G S ++
Sbjct: 8 PGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEVDGLS--YKL 65
Query: 337 TDMVPGEKCMIQV---NSVSYSVES 358
+ + ++ N V +
Sbjct: 66 EGLKKFTEYSLRFLAYNRYGPGVST 90
Score = 48.0 bits (115), Expect = 6e-07
Identities = 15/71 (21%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 559 PEPITRINATEITDTSVSLTWDSPR---GEYNAFEVQYLNTEGFLIQNLTL-HTSIVIGD 614
P P+ + A + TS+ +TW+ P G + + QN+ + S +
Sbjct: 8 PGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNIEVDGLSYKLEG 67
Query: 615 LKPHRNYTFTV 625
LK Y+
Sbjct: 68 LKKFTEYSLRF 78
Score = 34.9 bits (81), Expect = 0.023
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 142 KISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAV-SNGMESPSFPI 194
++ E+ G + VD Y LE L +YS+ A G + I
Sbjct: 42 RLFCTEVS--TGKEQNIEVDGLSYKLEGLKKFTEYSLRFLAYNRYGPGVSTDDI 93
Score = 33.4 bits (77), Expect = 0.093
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 7/71 (9%)
Query: 205 LNISWK--SDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAI 262
+ I+W+ + N + + T + LE L YS++ A
Sbjct: 24 ILITWEPPAYANGPVQGYRLFCTEVST--GKEQNIEVDGLSYKLEGLKKFTEYSLRFLAY 81
Query: 263 SH---GLRSEP 270
+ G+ ++
Sbjct: 82 NRYGPGVSTDD 92
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 52.3 bits (126), Expect = 3e-08
Identities = 15/85 (17%), Positives = 27/85 (31%), Gaps = 7/85 (8%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEV 336
P P NL S ++ V W+ PV Y + Y + + +S +
Sbjct: 18 PGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDV--SSHSYTI 75
Query: 337 TDMVPGEKCMIQV---NSVSYSVES 358
+ + +V N V +
Sbjct: 76 NGLKKYTEYSFRVVAYNKHGPGVST 100
Score = 45.8 bits (109), Expect = 4e-06
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 5/87 (5%)
Query: 544 DGVLSTPIQRHDRLY-PEPITRINATEITDTSVSLTWDSPR---GEYNAFEVQYLNTEGF 599
S ++ + P P + A + TS+++TW++P GE +++ Y+
Sbjct: 2 SSGSSGRVETQPEVQLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTD 61
Query: 600 LIQNLTLH-TSIVIGDLKPHRNYTFTV 625
Q++ + S I LK + Y+F V
Sbjct: 62 KEQDVDVSSHSYTINGLKKYTEYSFRV 88
Score = 33.1 bits (76), Expect = 0.11
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 3/60 (5%)
Query: 138 DNGSKISY-VEIETLNGDSNQMF-VDKTEYVLESLLPGRKYSINVQAV-SNGMESPSFPI 194
NG +Y + D Q V Y + L +YS V A +G + +
Sbjct: 44 GNGEIQNYKLYYMEKGTDKEQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDV 103
Score = 33.1 bits (76), Expect = 0.14
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 7/71 (9%)
Query: 205 LNISWK--SDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAI 262
+ ++W+ N N+++ Y T + V + + L YS +V A
Sbjct: 34 ITVTWETPVSGNGEIQNYKLYYMEKGT--DKEQDVDVSSHSYTINGLKKYTEYSFRVVAY 91
Query: 263 SH---GLRSEP 270
+ G+ +
Sbjct: 92 NKHGPGVSTPD 102
Score = 27.7 bits (62), Expect = 9.1
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 514 EKAANDTDRKVTFNNLTPGKLYNFTV--WTVA-DGVLSTPIQ 552
E+ + + T N L Y+F V + GV + +
Sbjct: 63 EQDVDVSSHSYTINGLKKYTEYSFRVVAYNKHGPGVSTPDVA 104
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 56.0 bits (134), Expect = 3e-08
Identities = 40/290 (13%), Positives = 87/290 (30%), Gaps = 29/290 (10%)
Query: 79 EPLPVLDLTAVMDDKTGDLFISWKP----DNASYQDMYKISIKSILLEEEHQKQFLMGFL 134
LP ++ T + + + WKP + + Y++ I + ++ + +
Sbjct: 11 SLLPPVNFT-IKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDYETRITESKAV 69
Query: 135 GDCDNGSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESPSFPI 194
G S I + E PG +N+ +N E
Sbjct: 70 TILHMGFSASVRTILQNDHSLLASSWASAELHAPPGSPGTS-IVNLTCTTNTTE----DN 124
Query: 195 IEDLRPIEFGLNISWKSDVNSRQDNFEVIYNRN--------DTITEDPITVVTTDSKLLL 246
LR + L+ +W ++ +D +Y R + + +
Sbjct: 125 YSRLRSYQVSLHCTWMVGTDAPEDTQYFLYYRYGSWTEECQEYSMDTLGRNIACWFPRTF 184
Query: 247 ENLYPGAGYSIQVFAISHGLRSEPHDYF----QAVYPKPPTNLTLEKTSSNAVLVKWKEP 302
++ V S P D PP N+T E + ++W++P
Sbjct: 185 ILSKGRDWLAVLVNGSSKHSAIRPFDQLFALHAIDQINPPLNVTAE-IEGTRMSIQWEKP 243
Query: 303 VGSIFT---EYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQV 349
V + +Y ++ + + + ++ + K +QV
Sbjct: 244 VSAFPIHCFDYEVKIHNTRNGYLQIEKLMTNAF---ISIIDDLSKYDVQV 290
Score = 40.6 bits (94), Expect = 0.002
Identities = 37/290 (12%), Positives = 90/290 (31%), Gaps = 32/290 (11%)
Query: 275 QAVYPKPPTNLTLEKTSSNAVLVKWKEPVG----SIFTEYSIRYRTEEDKTWVRLPNVGT 330
+ + PP N T++ T VL++WK ++ EY ++ ++ +
Sbjct: 8 EKISLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEYQVKINAPKEDDY----ETRI 63
Query: 331 SLEAEVTDMVPGEKCMIQVN-SVSYSVESAHPLQINHTISP-NPATYVAALVDASNVTLE 388
+ VT + G ++ +S+ ++ P +P T + L +N T +
Sbjct: 64 TESKAVTILHMGFSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTTED 123
Query: 389 FPRPEGRIEYYLV-TW--RGIGPEATSTELFTKNVTNDPEDKDKHV---------HILID 436
+ L TW PE T L+ + + E ++ +
Sbjct: 124 NYSRLRSYQVSLHCTWMVGTDAPEDTQYFLYYRYGSWTEECQEYSMDTLGRNIACWFPRT 183
Query: 437 QLTPGVKYQFTIRTVSYNLESGVTSLSARTMPLIESEVL----VVNNQQSTDSVTLRYTP 492
+ + + V+ + + + L + + V + +++++
Sbjct: 184 FILSKGRDWLAVL-VNGSSKHSAIRPFDQLFALHAIDQINPPLNVTAEIEGTRMSIQWEK 242
Query: 493 QNSNHFDF---YRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTV 539
S Y + ++ T + + Y+ V
Sbjct: 243 PVSAFPIHCFDYEVKIHNTRNGYLQIEKLMT--NAFISIIDDLSKYDVQV 290
Score = 38.3 bits (88), Expect = 0.013
Identities = 26/147 (17%), Positives = 45/147 (30%), Gaps = 13/147 (8%)
Query: 491 TPQNSNHFDFYRFTLSEPDIPVIEKAANDTDRKVTFN----NLTPGKLYNFTVWTVADGV 546
P+++ +F +YR+ + + F V +
Sbjct: 145 APEDTQYFLYYRYGSWTEECQEYSMDTLGRNIACWFPRTFILSKGRDWLAVLVNGSSKHS 204
Query: 547 LSTP----IQRHDRLYPEPITRINATEITDTSVSLTWDSPRGEYNA----FEVQYLNTEG 598
P H P + A EI T +S+ W+ P + +EV+ NT
Sbjct: 205 AIRPFDQLFALHAIDQINPPLNVTA-EIEGTRMSIQWEKPVSAFPIHCFDYEVKIHNTRN 263
Query: 599 FLIQNLTLHTSIVIGDLKPHRNYTFTV 625
+Q L T+ I + Y V
Sbjct: 264 GYLQIEKLMTNAFISIIDDLSKYDVQV 290
Score = 33.7 bits (76), Expect = 0.29
Identities = 13/112 (11%), Positives = 29/112 (25%), Gaps = 20/112 (17%)
Query: 176 YSINVQAVSNGMESPSFPIIED--------------LRPIEFGLNISWK---SDVNSRQD 218
++ V S F + ++I W+ S
Sbjct: 193 LAVLVNGSSKHSAIRPFDQLFALHAIDQINPPLNVTAEIEGTRMSIQWEKPVSAFPIHCF 252
Query: 219 NFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAISHGLRSEP 270
++EV + + + + + + Y +QV A + E
Sbjct: 253 DYEVKIHNTRNGYL---QIEKLMTNAFISIIDDLSKYDVQVRAAVSSMCREA 301
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 52.0 bits (125), Expect = 3e-08
Identities = 18/92 (19%), Positives = 33/92 (35%), Gaps = 7/92 (7%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKTWVRLPNV-GTSLEAE 335
P P ++ SS V + W+ P +++ + E D L SL+
Sbjct: 18 PSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERALNTTQPGSLQLT 77
Query: 336 VTDMVPGEKCMIQV---NSVSYSVESAHPLQI 364
V ++ P +V N S P+++
Sbjct: 78 VGNLKPEAMYTFRVVAYNEWGPGESSQ-PIKV 108
Score = 46.3 bits (110), Expect = 4e-06
Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 559 PEPITRINATEITDTSVSLTWDSPR---GEYNAFEVQY--LNTEGFLIQNLTLH--TSIV 611
P + ++ V L+W P G F V + N T +
Sbjct: 18 PSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERALNTTQPGSLQLT 77
Query: 612 IGDLKPHRNYTFTVI 626
+G+LKP YTF V+
Sbjct: 78 VGNLKPEAMYTFRVV 92
Score = 35.1 bits (81), Expect = 0.024
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 6/63 (9%)
Query: 138 DNGSKISY-VEIETLNGDSNQMF----VDKTEYVLESLLPGRKYSINVQAV-SNGMESPS 191
G+ ++ V + + + + +L P Y+ V A G S
Sbjct: 44 AKGNIQTFTVFFSREGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYNEWGPGESS 103
Query: 192 FPI 194
PI
Sbjct: 104 QPI 106
Score = 32.0 bits (73), Expect = 0.32
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 207 ISWK--SDVNSRQDNFEVIYNRNDTITEDPITVVTTDS-KLLLENLYPGAGYSIQVFAIS 263
+SW+ ++ F V ++R E + S +L + NL P A Y+ +V A +
Sbjct: 36 LSWRPPAEAKGNIQTFTVFFSREGDNRERALNTTQPGSLQLTVGNLKPEAMYTFRVVAYN 95
Query: 264 H---GLRSEP 270
G S+P
Sbjct: 96 EWGPGESSQP 105
Score = 28.9 bits (65), Expect = 3.3
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 11/80 (13%)
Query: 482 STDSVTLRYTPQNSNHFD------FYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLY 535
S+ V L + P + F+ + + ++T NL P +Y
Sbjct: 30 SSRFVRLSWRPPAEAKGNIQTFTVFFSREGDNRERALNTTQPGSL--QLTVGNLKPEAMY 87
Query: 536 NFTVW---TVADGVLSTPIQ 552
F V G S PI+
Sbjct: 88 TFRVVAYNEWGPGESSQPIK 107
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 51.5 bits (124), Expect = 4e-08
Identities = 17/86 (19%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEV 336
P + S+ V W+ P+ G+ TEY + + E + G L E+
Sbjct: 8 PDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQIC--YCGPGLSYEI 65
Query: 337 TDMVPGEKCMIQV---NSVSYSVESA 359
+ P +V + V S
Sbjct: 66 KGLSPATTYYCRVQALSVVGAGPFSE 91
Score = 44.6 bits (106), Expect = 9e-06
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 10/75 (13%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRG------EYNAFEVQYLNTEG-FLIQNLTLHTSIV 611
P+ T + T + W+ P EY +++ EG I S
Sbjct: 8 PDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEY---RLEWGGVEGSMQICYCGPGLSYE 64
Query: 612 IGDLKPHRNYTFTVI 626
I L P Y V
Sbjct: 65 IKGLSPATTYYCRVQ 79
Score = 34.6 bits (80), Expect = 0.031
Identities = 13/62 (20%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 138 DNGSKISY--VEIETLNGDSNQMF-VDKTEYVLESLLPGRKYSINVQAVSNGMESPSFPI 194
NG+ ++ +E + G + Y ++ L P Y VQA+S P +
Sbjct: 33 SNGTDVTEYRLEWGGVEGSMQICYCGPGLSYEIKGLSPATTYYCRVQALSVVGAGPFSEV 92
Query: 195 IE 196
+
Sbjct: 93 VA 94
Score = 28.4 bits (64), Expect = 4.2
Identities = 10/81 (12%), Positives = 21/81 (25%), Gaps = 15/81 (18%)
Query: 372 PATYVAALVDASNVTLEFPRPE---GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKD 428
A+ + + P + Y + W G+ E + +
Sbjct: 11 CKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGV--EGSMQICYCGPGL------- 61
Query: 429 KHVHILIDQLTPGVKYQFTIR 449
I L+P Y ++
Sbjct: 62 ---SYEIKGLSPATTYYCRVQ 79
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 53.6 bits (128), Expect = 5e-08
Identities = 29/181 (16%), Positives = 64/181 (35%), Gaps = 13/181 (7%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEPVGSIF-TEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDM 339
PP N+ + + +L +W+ P + ++ +Y + + T E + + +
Sbjct: 4 PPENVRMNSVNFKNIL-QWESPAFAKGQLTFTAQYLSYRIFQDKCMQ--TTLTECDFSSL 60
Query: 340 VPGEKCMIQV-----NSVSYSVESAHPLQINHTISPNPATYVAALVDASNVTLEFPRPEG 394
++V + S V+ + I P P V L D ++ P+ E
Sbjct: 61 SKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGP-PGMQVEVLADCLHMRFLAPKIEN 119
Query: 395 RIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKD-KHVHILIDQLTPGVKYQFTIRTVSY 453
E + T + + T + K T++ ++ ++ L P Y +R
Sbjct: 120 EYETW--TMKNVYNSWTYNVQYWKQGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRGFLP 177
Query: 454 N 454
+
Sbjct: 178 D 178
Score = 44.3 bits (104), Expect = 6e-05
Identities = 24/156 (15%), Positives = 47/156 (30%), Gaps = 16/156 (10%)
Query: 514 EKAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTPIQRHDRLYPEPITRINATEIT-- 571
+K T + F++L+ + V S +Q + I ++
Sbjct: 45 DKCMQTTLTECDFSSLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVL 104
Query: 572 DTSVSLTWDSPRGEYN-------------AFEVQYL-NTEGFLIQNLTLHTSIVIGDLKP 617
+ + + +P+ E + VQY Q + V+ +L+P
Sbjct: 105 ADCLHMRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYDFEVLRNLEP 164
Query: 618 HRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLP 653
Y V + S PV E++P
Sbjct: 165 WTTYCVQVRGFLPDRNKAGEWSEPVCEQTTHDETVP 200
Score = 38.9 bits (90), Expect = 0.004
Identities = 21/140 (15%), Positives = 41/140 (29%), Gaps = 28/140 (20%)
Query: 160 VDKTEYVLESLLPGRKYSINVQAVSNGMESPSF-------------PIIEDLRPIEFGLN 206
TE SL +++ V+A S P + + L+
Sbjct: 50 TTLTECDFSSLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVLADCLH 109
Query: 207 ISWKS----------DVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYS 256
+ + + + + +++ T++ + +L NL P Y
Sbjct: 110 MRFLAPKIENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYDFEVLRNLEPWTTYC 169
Query: 257 IQVFAIS-----HGLRSEPH 271
+QV G SEP
Sbjct: 170 VQVRGFLPDRNKAGEWSEPV 189
Score = 38.6 bits (89), Expect = 0.006
Identities = 19/171 (11%), Positives = 52/171 (30%), Gaps = 21/171 (12%)
Query: 201 IEFGLNISWKSDVNSRQD-NFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQV 259
+ F + W+S ++ F Y + TT ++ +L ++++V
Sbjct: 13 VNFKNILQWESPAFAKGQLTFTAQYLSYRI--FQDKCMQTTLTECDFSSLSKYGDHTLRV 70
Query: 260 FAISHGLRSEPHDYFQAVYPKP---PTNLTLEKTSSNAVLVKWKEPVGSIFT-------- 308
A S+ + P + +E ++ + +++ P
Sbjct: 71 RAEFADEHSDWVQITFSPVDDTIIGPPGMQVE-VLADCLHMRFLAPKIENEYETWTMKNV 129
Query: 309 ----EYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQVNSVSYS 355
Y+++Y + ++ + ++ P +QV
Sbjct: 130 YNSWTYNVQYWKQGTDEKFQITPQYDFE--VLRNLEPWTTYCVQVRGFLPD 178
Score = 33.6 bits (76), Expect = 0.22
Identities = 12/122 (9%), Positives = 33/122 (27%), Gaps = 11/122 (9%)
Query: 435 IDQLTPGVKYQFTIRTVSYNLESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYT-PQ 493
L+ + +R + S ++ + + + D + +R+ P+
Sbjct: 57 FSSLSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVLADCLHMRFLAPK 116
Query: 494 NSNHFDFYRFTLSEPD----IPVIEKAAND------TDRKVTFNNLTPGKLYNFTVWTVA 543
N ++ + + ++ ++ NL P Y V
Sbjct: 117 IENEYETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRGFL 176
Query: 544 DG 545
Sbjct: 177 PD 178
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 51.2 bits (123), Expect = 6e-08
Identities = 22/103 (21%), Positives = 40/103 (38%), Gaps = 7/103 (6%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAE 335
P PP + +E V + W P + T Y+I+ ++ W + A
Sbjct: 18 PGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTSAT 77
Query: 336 VTDMVPGEKCMIQV---NSVSYSVESAHPLQINHTISPNPATY 375
+T++V G + +V N S E A + + I+ + Y
Sbjct: 78 ITELVIGNEYYFRVFSENMCGLS-EDATMTKESAVIARDGKIY 119
Score = 43.9 bits (104), Expect = 3e-05
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNA----FEVQYLNTEG---FLIQNLTLHTSIV 611
P P + ++ +V+LTW P+ + NA + +Q + + F + TS
Sbjct: 18 PGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEHYHRTSAT 77
Query: 612 IGDLKPHRNYTFTVI 626
I +L Y F V
Sbjct: 78 ITELVIGNEYYFRVF 92
Score = 30.0 bits (68), Expect = 1.5
Identities = 8/62 (12%), Positives = 19/62 (30%), Gaps = 6/62 (9%)
Query: 138 DNGSKISY--VEIETLNGDSNQMF---VDKTEYVLESLLPGRKYSINVQAV-SNGMESPS 191
D + I+ ++ +T + L+ G +Y V + G+ +
Sbjct: 44 DGNAAITGYTIQKADKKSMEWFTVIEHYHRTSATITELVIGNEYYFRVFSENMCGLSEDA 103
Query: 192 FP 193
Sbjct: 104 TM 105
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 54.8 bits (131), Expect = 6e-08
Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 13/158 (8%)
Query: 205 LNISWKSDVNSRQD-NFEVIYNR-NDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAI 262
+ W + + NF + + T S + + + V A
Sbjct: 120 MRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAE 179
Query: 263 SHGLRSEPHDY----FQAVYPKPPTNLTLEKTSSNA--VLVKWKEPV--GSIFTEYSIRY 314
+ + V P PP NL++ + + + + W P I +Y+I+Y
Sbjct: 180 NALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQY 239
Query: 315 RTEEDKTWVRLPNV---GTSLEAEVTDMVPGEKCMIQV 349
RT++ TW ++P T V D+ P + + ++
Sbjct: 240 RTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRI 277
Score = 38.7 bits (89), Expect = 0.010
Identities = 32/270 (11%), Positives = 70/270 (25%), Gaps = 33/270 (12%)
Query: 383 SNVTL-----EFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQ 437
SN T E + + W+ + N T D
Sbjct: 20 SNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTA-------SSVTFTDI 72
Query: 438 LTPGVKYQFTIRTVSYNLES-GVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQNSN 496
+ ++ I T ++ ++ + P + + N + +
Sbjct: 73 ASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVN--EGKKMRCEWDGGRET 130
Query: 497 HFD-FYRFTLSEPDIPVIEKAANDTDRKVTF--NNLTPGKLYNFTVWTV-ADGVLSTP-- 550
H + + + A + V A G +++
Sbjct: 131 HLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHI 190
Query: 551 -IQRHDRLYPEPITRINATEITDT--SVSLTWDSPR---GEYNAFEVQY------LNTEG 598
++ P P ++ + + LTW +P + +QY ++
Sbjct: 191 NFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQI 250
Query: 599 FLIQNLTLHTSIVIGDLKPHRNYTFTVIVR 628
+ +S + DLKP Y F +
Sbjct: 251 PPEDTASTRSSFTVQDLKPFTEYVFRIRCM 280
Score = 36.3 bits (83), Expect = 0.053
Identities = 20/141 (14%), Positives = 39/141 (27%), Gaps = 22/141 (15%)
Query: 165 YVLESLLPGRKYSINVQAVSNGMESPSFPIIEDLRPI-----------------EFGLNI 207
V S + + V+A + + S I D L +
Sbjct: 161 TVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKL 220
Query: 208 SWK--SDVNSRQDNFEVIYNRNDTITEDPITVVTTDSK---LLLENLYPGAGYSIQVFAI 262
+W S + + + Y D T I T S +++L P Y ++ +
Sbjct: 221 TWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCM 280
Query: 263 SHGLRSEPHDYFQAVYPKPPT 283
+ D+ +
Sbjct: 281 KEDGKGYWSDWSEEASGITYE 301
Score = 29.8 bits (66), Expect = 5.7
Identities = 26/198 (13%), Positives = 47/198 (23%), Gaps = 27/198 (13%)
Query: 518 NDTDRKVTFNNLTPGK-LYNFTVWTV-ADGVLSTPIQRHDRLYPEPITRINATEITDTSV 575
N T VTF ++ + T I L PE ++ +
Sbjct: 61 NRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKM 120
Query: 576 SLTWDSPR--GEYNAFEVQYL----NTEGFLIQNLTLHTSIVIGDLKPHRNYTFTVIVRS 629
WD R F ++ + T + V N V +
Sbjct: 121 RCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVDYSTVYFVNIEVWVEAEN 180
Query: 630 GTESSVLRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFFQAEKFHPIDVQPGDITFEW 689
L + F + + + + W
Sbjct: 181 A-----LGKVTSDHINFDPVYKVKPNPPHNL-------------SVINSEELSSILKLTW 222
Query: 690 SLPGSEQNGVIRKFTISY 707
+ P ++ +I K+ I Y
Sbjct: 223 TNPSI-KSVIILKYNIQY 239
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 53.5 bits (128), Expect = 6e-08
Identities = 34/185 (18%), Positives = 65/185 (35%), Gaps = 30/185 (16%)
Query: 179 NVQAVSNGMESPSFPIIEDLRPIEFGLNISWK--SDVNSRQDNFEVIYNR-NDTITEDPI 235
N+ + N + + W + + NF + +
Sbjct: 13 NLSCIVNEGKK---------------MRCEWDGGRETHLET-NFTLKSEWATHKFADCKA 56
Query: 236 TVVTTDSKLLLENLYPGAGYSIQVFAIS-HGLRSEPHDYFQAVY---PKPPTNLTLEKTS 291
T S + + + V A + G + H F VY P PP NL++ +
Sbjct: 57 KRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSE 116
Query: 292 SNA--VLVKWKEPV--GSIFTEYSIRYRTEEDKTWVRLPNV---GTSLEAEVTDMVPGEK 344
+ + + W P I +Y+I+YRT++ TW ++P T V D+ P +
Sbjct: 117 ELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTE 176
Query: 345 CMIQV 349
+ ++
Sbjct: 177 YVFRI 181
Score = 44.2 bits (104), Expect = 1e-04
Identities = 27/182 (14%), Positives = 53/182 (29%), Gaps = 18/182 (9%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV-GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVT 337
P+ P NL+ + +W + T ++++ K T V
Sbjct: 8 PEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVD 67
Query: 338 -DMVPGEKCMIQVN------SVSYSVESAHPLQINHTISPNPATYVAALVDASNVTLEFP 390
V + V V+ + P+ P+ + + + +S + L +
Sbjct: 68 YSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWT 127
Query: 391 RPE---GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFT 447
P I Y + +R T + + + L P +Y F
Sbjct: 128 NPSIKSVIILKYNIQYRTKDAS-------TWSQIPPEDTASTRSSFTVQDLKPFTEYVFR 180
Query: 448 IR 449
IR
Sbjct: 181 IR 182
Score = 40.7 bits (95), Expect = 0.001
Identities = 27/153 (17%), Positives = 45/153 (29%), Gaps = 22/153 (14%)
Query: 528 NLTPGKLYNFTVWTV-ADGVLS---TPIQRHDRLYPEPITRINATEITDT--SVSLTWDS 581
+ V A G ++ ++ P P ++ + + LTW +
Sbjct: 69 STVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTN 128
Query: 582 PR---GEYNAFEVQYLNTEG------FLIQNLTLHTSIVIGDLKPHRNYTFTVIVRSGTE 632
P + +QY + + +S + DLKP Y F +R E
Sbjct: 129 PSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFR--IRCMKE 186
Query: 633 SSVLRRSLP-VSAIFQTHESLPGKMDRTIVDTW 664
S A T+E P K W
Sbjct: 187 DGKGYWSDWSEEASGITYEDRPSKE----PSFW 215
Score = 36.5 bits (84), Expect = 0.029
Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 22/140 (15%)
Query: 165 YVLESLLPGRKYSINVQAVSNGMESPSFPIIEDLRPI-----------------EFGLNI 207
V S + + V+A + + S I D L +
Sbjct: 65 TVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKL 124
Query: 208 SWK--SDVNSRQDNFEVIYNRNDTITEDPITVVTTDSK---LLLENLYPGAGYSIQVFAI 262
+W S + + + Y D T I T S +++L P Y ++ +
Sbjct: 125 TWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCM 184
Query: 263 SHGLRSEPHDYFQAVYPKPP 282
+ D+ +
Sbjct: 185 KEDGKGYWSDWSEEASGITY 204
Score = 30.7 bits (69), Expect = 2.2
Identities = 19/155 (12%), Positives = 37/155 (23%), Gaps = 25/155 (16%)
Query: 559 PEPITRINATEITDTSVSLTWDSPR--GEYNAFEVQY----LNTEGFLIQNLTLHTSIVI 612
PE ++ + WD R F ++ + T + V
Sbjct: 8 PEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCKAKRDTPTSCTVD 67
Query: 613 GDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFFQA 672
N V + L + F + +
Sbjct: 68 YSTVYFVNIEVWVEAENA-----LGKVTSDHINFDPVYKVKPNPPHNL------------ 110
Query: 673 EKFHPIDVQPGDITFEWSLPGSEQNGVIRKFTISY 707
+ + W+ P S ++ +I K+ I Y
Sbjct: 111 -SVINSEELSSILKLTWTNP-SIKSVIILKYNIQY 143
Score = 29.6 bits (66), Expect = 5.4
Identities = 17/172 (9%), Positives = 44/172 (25%), Gaps = 21/172 (12%)
Query: 380 VDASNVTLEF--PRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQ 437
+ + E+ R + + + + + +
Sbjct: 19 NEGKKMRCEWDGGRETHLETNFTLKSEWATHKFADCK---------AKRDTPTSCTVDYS 69
Query: 438 LTPGVKYQFTIRTV----SYNLESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYT-P 492
V + + + + P + V+N+++ + + L +T P
Sbjct: 70 TVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNP 129
Query: 493 QNSNHFDF-----YRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTV 539
+ YR + + + T T +L P Y F +
Sbjct: 130 SIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRI 181
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 51.2 bits (123), Expect = 6e-08
Identities = 14/70 (20%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTWVRL-PNVGTSLEA 334
PPT LT++ + V ++W+ P + Y + Y E + W+ ++ +
Sbjct: 8 TSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKF 67
Query: 335 EVTDMVPGEK 344
+T + K
Sbjct: 68 TITGLPTDAK 77
Score = 39.6 bits (93), Expect = 5e-04
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 8/76 (10%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNA----FEVQYLNTEG----FLIQNLTLHTSI 610
P T + +TDT+V++ W P A + ++Y ++L T
Sbjct: 8 TSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKF 67
Query: 611 VIGDLKPHRNYTFTVI 626
I L V
Sbjct: 68 TITGLPTDAKIFVRVK 83
Score = 30.8 bits (70), Expect = 0.67
Identities = 12/63 (19%), Positives = 25/63 (39%), Gaps = 7/63 (11%)
Query: 138 DNGSKISY--VEIETLNGDS----NQMFVDKTEYVLESLLPGRKYSINVQAV-SNGMESP 190
+ + +E + N+ +DKT++ + L K + V+AV + G P
Sbjct: 34 IGAAGLDGYVLEYCFEGTEDWIVANKDLIDKTKFTITGLPTDAKIFVRVKAVNAAGASEP 93
Query: 191 SFP 193
+
Sbjct: 94 KYY 96
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 50.5 bits (121), Expect = 1e-07
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 4/74 (5%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAE 335
P + + ++ + W +P G I +Y IRY +E + + A
Sbjct: 8 PSTVPIMHQVSATMRSITLSWPQPEQPNGII-LDYEIRYYEKEHNEFNSSMARSQTNTAR 66
Query: 336 VTDMVPGEKCMIQV 349
+ + PG ++QV
Sbjct: 67 IDGLRPGMVYVVQV 80
Score = 46.7 bits (111), Expect = 2e-06
Identities = 15/73 (20%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 559 PEPITRINATEITDTSVSLTWDSPR---GEYNAFEVQYLNTEGFLIQNLTL---HTSIVI 612
P + ++ T S++L+W P G +E++Y E + + I
Sbjct: 8 PSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTARI 67
Query: 613 GDLKPHRNYTFTV 625
L+P Y V
Sbjct: 68 DGLRPGMVYVVQV 80
Score = 37.8 bits (88), Expect = 0.002
Identities = 17/85 (20%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 205 LNISWK--SDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAI 262
+ +SW N ++E+ Y + + + + ++ L PG Y +QV A
Sbjct: 24 ITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTNTARIDGLRPGMVYVVQVRAR 83
Query: 263 S---HGLRSEPHDYFQAVYPKPPTN 284
+ +G S FQ + P++
Sbjct: 84 TVAGYGKFSGKM-CFQTLTDSGPSS 107
Score = 33.2 bits (76), Expect = 0.12
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 142 KISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVS---NGMESPSF 192
+I Y E E +S+ ++ L PG Y + V+A + G S
Sbjct: 42 EIRYYEKEHNEFNSSMARSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKM 95
Score = 32.0 bits (73), Expect = 0.30
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 13/81 (16%)
Query: 372 PATYVAALVDASNVTLEFPRPE---GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKD 428
++TL +P+PE G I Y + + ++ +
Sbjct: 11 VPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTN------- 63
Query: 429 KHVHILIDQLTPGVKYQFTIR 449
ID L PG+ Y +R
Sbjct: 64 ---TARIDGLRPGMVYVVQVR 81
Score = 29.7 bits (67), Expect = 1.8
Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 15/100 (15%)
Query: 464 ARTMPLIESEVLVVN-NQQSTDSVTLR-YTPQNSN------HFDFYRFTLSEPDIPVIEK 515
+ S V +++ + S+TL P+ N +Y +E + +
Sbjct: 1 GSSGSSGPSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMA-- 58
Query: 516 AANDTDRKVTFNNLTPGKLYNFTV--WTVA-DGVLSTPIQ 552
+ L PG +Y V TVA G S +
Sbjct: 59 --RSQTNTARIDGLRPGMVYVVQVRARTVAGYGKFSGKMC 96
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 50.4 bits (121), Expect = 1e-07
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 3/67 (4%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAE 335
P P + L K + ++W +P Y + E + G L
Sbjct: 8 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYT 67
Query: 336 VTDMVPG 342
V ++
Sbjct: 68 VKNLRRS 74
Score = 36.9 bits (86), Expect = 0.006
Identities = 16/75 (21%), Positives = 27/75 (36%), Gaps = 7/75 (9%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYL-------NTEGFLIQNLTLHTSIV 611
P T+ T +SL W P G + + Y+ + GF + +
Sbjct: 8 PSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDGEDLAYT 67
Query: 612 IGDLKPHRNYTFTVI 626
+ +L+ Y F VI
Sbjct: 68 VKNLRRSTKYKFKVI 82
Score = 30.0 bits (68), Expect = 1.4
Identities = 13/60 (21%), Positives = 20/60 (33%), Gaps = 6/60 (10%)
Query: 138 DNGSKISYVEIETLNGDSNQMF-----VDKTEYVLESLLPGRKYSINVQAV-SNGMESPS 191
+ +E S F + Y +++L KY V A S G +PS
Sbjct: 34 TPSDEGISYILEMEEETSGYGFKPKYDGEDLAYTVKNLRRSTKYKFKVIAYNSEGKSNPS 93
Score = 28.5 bits (64), Expect = 5.3
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 14/76 (18%)
Query: 380 VDASNVTLEFPRPEG----RIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILI 435
+ ++L++ +P G Y++ E TS F + + +
Sbjct: 19 AGITWLSLQWSKPSGTPSDEGISYILEME----EETSGYGFKPKYDG------EDLAYTV 68
Query: 436 DQLTPGVKYQFTIRTV 451
L KY+F +
Sbjct: 69 KNLRRSTKYKFKVIAY 84
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 50.5 bits (121), Expect = 1e-07
Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 10/91 (10%)
Query: 279 PKPPTNLTLE--KTSSNAVLVKWKEP--VGSIFTEYSIRYRT---EEDKTWVRLPNVGTS 331
P +LT+ + AV+V W+ P T Y + Y W+ G
Sbjct: 9 TSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDR 68
Query: 332 LEAEVTDMVPGEKCMIQV---NSVSYSVESA 359
L ++ D+ ++ NS S
Sbjct: 69 LTHQIMDLNLDTMYYFRIQARNSKGVGPLSD 99
Score = 39.3 bits (92), Expect = 8e-04
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 10/76 (13%)
Query: 559 PEPITRINATEITDTSVSLTWDSPR---GEYNAFEVQYLNTEGFLIQNLTL------HTS 609
P+ +T + E +V ++W P G+ A+ + Y + I + + +
Sbjct: 12 PKDLT-VITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRLT 70
Query: 610 IVIGDLKPHRNYTFTV 625
I DL Y F +
Sbjct: 71 HQIMDLNLDTMYYFRI 86
Score = 31.2 bits (71), Expect = 0.51
Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 205 LNISWK--SDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLL---LENLYPGAGYSIQV 259
+ +SW+ + N + + + Y + I D + T L + +L Y ++
Sbjct: 27 VIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYFRI 86
Query: 260 FA 261
A
Sbjct: 87 QA 88
Score = 30.0 bits (68), Expect = 1.5
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 140 GSKISYVEIETLNGDSNQMFV---DKTEYVLESLLPGRKYSINVQAV 183
+ Y + + D M D+ + + L Y +QA
Sbjct: 43 AYILFYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYFRIQAR 89
Score = 28.9 bits (65), Expect = 4.0
Identities = 12/56 (21%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 500 FYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTV--WTVA-DGVLSTPIQ 552
FY + P I + + +L +Y F + G LS PI
Sbjct: 47 FYTLDKNIPIDDWIMETISGDRLTHQIMDLNLDTMYYFRIQARNSKGVGPLSDPIL 102
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 50.6 bits (121), Expect = 1e-07
Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 10/91 (10%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEP----VGSIFTEYSIRYR---TEEDKTWVRLPNVGTS 331
P + + +++KW + + I YR ++ D + + G
Sbjct: 9 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 68
Query: 332 LEAEVTDMVPGEKCMIQV---NSVSYSVESA 359
++ + P I++ N S S
Sbjct: 69 YWHSISHLQPETSYDIKMQCFNEGGESEFSN 99
Score = 35.9 bits (83), Expect = 0.014
Identities = 9/78 (11%), Positives = 21/78 (26%), Gaps = 11/78 (14%)
Query: 559 PEPITRINATEITDTSVSLTWDSP-----RGEYNAFEVQY------LNTEGFLIQNLTLH 607
+ +T++ L W + F + Y +++
Sbjct: 9 VAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDR 68
Query: 608 TSIVIGDLKPHRNYTFTV 625
I L+P +Y +
Sbjct: 69 YWHSISHLQPETSYDIKM 86
Score = 35.5 bits (82), Expect = 0.021
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
Query: 142 KISYVEIETLNGDSNQMFV---DKTEYVLESLLPGRKYSINVQAVSNGMESP 190
I Y ++ N + + D+ + + L P Y I +Q + G ES
Sbjct: 45 YIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESE 96
Score = 31.7 bits (72), Expect = 0.37
Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 10/76 (13%)
Query: 205 LNISWK----SDVNSRQDNFEVIYNRNDTITE---DPITVVTTDSKLLLENLYPGAGYSI 257
+ + W S+ N+ F + Y D+ + V + +L P Y I
Sbjct: 25 IMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDI 84
Query: 258 QVFAIS---HGLRSEP 270
++ + S
Sbjct: 85 KMQCFNEGGESEFSNV 100
Score = 30.1 bits (68), Expect = 1.6
Identities = 17/122 (13%), Positives = 31/122 (25%), Gaps = 37/122 (30%)
Query: 803 APPRPSSQVVPTEVCRTSTTIQIRFRKNYFSEKNGAIIYYTVIVAEDDSKNSSGLEMPSW 862
P V TTI +++ S N I + + DS N S +
Sbjct: 7 GPVAGPYITFTDAV--NETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDS-----DY 59
Query: 863 RDVQAYSVWPPYQVLEPFQFFKNMSVEDFTIGEESCEGKTGYCNGPLKSGSTYKVKIRAF 922
+ +I L+ ++Y +K++ F
Sbjct: 60 KKDMVEG-----------------DRYWHSISH-------------LQPETSYDIKMQCF 89
Query: 923 TT 924
Sbjct: 90 NE 91
Score = 29.0 bits (65), Expect = 3.0
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 3/56 (5%)
Query: 500 FYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVW---TVADGVLSTPIQ 552
+YR T S+ D + + ++L P Y+ + + S +
Sbjct: 47 YYRPTDSDNDSDYKKDMVEGDRYWHSISHLQPETSYDIKMQCFNEGGESEFSNVMI 102
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.2 bits (132), Expect = 1e-07
Identities = 68/550 (12%), Positives = 142/550 (25%), Gaps = 167/550 (30%)
Query: 626 IVRSGTESSVLRRSLPVSAIFQTHESLPGKMDRTIVDTWHFVRF-FQAEKFHPIDVQPGD 684
I+ S S R +F T S +M + V+ + + F QP
Sbjct: 54 IIMSKDAVSGTLR------LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 685 ITFEWSLPGSEQNGVIRKFTISYAQEAACNHNQRLHAKFQLPRVNSKKLKGWPGTLRTDW 744
+T + ++ N NQ AK+ + R+ + LR
Sbjct: 108 MTRMYI----------------EQRDRLYNDNQVF-AKYNVSRL--QPYL----KLRQ-- 142
Query: 745 RSYIYKLQAE--LGLHMEPETIWKQKMPIPRRCGLNPNSDIIK-------VNENNIKRIN 795
+ +L+ + + + G K ++
Sbjct: 143 --ALLELRPAKNVLID---------GVL---GSG--------KTWVALDVCLSYKVQCKM 180
Query: 796 SFNIYFLAPPRPSSQVVPTEVCRTSTTIQIRFRKNYFSEKNGAIIYYTVIVAEDDSKNSS 855
F I++L +S P V + + N+ S + + + + +
Sbjct: 181 DFKIFWLNLKNCNS---PETVLEMLQKLLYQIDPNWTSRSDHS---SNIKLRIHSIQAEL 234
Query: 856 GLEMPSWRDVQAY----SVWPPYQVLEPFQF-------FKNMSVEDFTIGEESCEGKTGY 904
+ S +V + F + V DF
Sbjct: 235 RRLLKSKPYENCLLVLLNVQNA-KAWNAFNLSCKILLTTRFKQVTDF------------- 280
Query: 905 CNGPLKSGSTYKVKIRAFTTPDKFTDTAYSFPISTGWYNFAL-LGQDQDNTPLVVGITIP 963
L + +T + + + T + L + P V T P
Sbjct: 281 ----LSAATTTHISLDHHSMT--LTP-DEVKSL------LLKYLDCRPQDLPREVLTTNP 327
Query: 964 FILVLILCMTVFILR---SRRKNVRKTTESRNADNMS-LQDSIVETSRPIRLEN------ 1013
L +I +R + N + N D ++ + +S + P
Sbjct: 328 RRLSIIAES----IRDGLATWDNWKHV----NCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
Query: 1014 -FAEHYRIMSA-------DSDFRFSEEFEELKHVGREQSCTAADLPCNRPKNRFTNILPY 1065
F I + D H + S + T +P
Sbjct: 380 VFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH---KYSL------VEKQPKESTISIPS 430
Query: 1066 DHSRFKLQPVDDEEGSDYINANYVPGHNSPRRSGTLIALDRILQSINHSDVVD------I 1119
+ K++ ++ H S ++ I ++ + D++
Sbjct: 431 IYLELKVKLENEYAL-----------HRS------IVDHYNIPKTFDSDDLIPPYLDQYF 473
Query: 1120 FG-IVYHMRK 1128
+ I +H++
Sbjct: 474 YSHIGHHLKN 483
Score = 51.8 bits (123), Expect = 2e-06
Identities = 86/600 (14%), Positives = 170/600 (28%), Gaps = 189/600 (31%)
Query: 363 QINHTI-SPNPATYVAALVD-----ASNVTLEFPRPEGRIEY-YLVT-WRG--IGPEATS 412
+I+H I S + + L + +F RI Y +L++ + P
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSM-M 108
Query: 413 TELFTK---NVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGVTSLSARTMPL 469
T ++ + + ND + K+ ++ ++ +R L ++ +
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKY-NV------SRLQPYLKLRQALLELRPA-KNVLIDGVLG 160
Query: 470 IESEVLVVNNQQSTDSVTLRYTPQNSNHFDFYRFTLSEPDIP--VIEKAANDTDRKVTFN 527
+ + V L Y Q F + L + P V+E
Sbjct: 161 SGKTWVAL-------DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK------LLY 207
Query: 528 NLTPGKLYNFTVWTVADGVLSTPIQRHD-----------RLYPEPITRINATEITDTSVS 576
+ P N+T + +D + ++ H + Y N + +V
Sbjct: 208 QIDP----NWT--SRSDHSSNIKLRIHSIQAELRRLLKSKPYE------NCLLVLL-NV- 253
Query: 577 LTWDSPRGEYNAFEVQ--------YLNTEGFLIQNLTLHTSIVIGDLKPHRNYTFTVIVR 628
++ +NAF + + FL T H S+ H + T T
Sbjct: 254 --QNA--KAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD------HHSMTLTP--- 300
Query: 629 SGTES-SVLRR-------SLPVSA--IFQTHESLPGKMDRTIVDTWHFVRFFQAEKFH-- 676
E S+L + LP S+ + R + TW + +K
Sbjct: 301 --DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 677 ---------PIDVQ---------PGD--ITFE-----WS-LPGSEQNGVIRKF------- 703
P + + P I W + S+ V+ K
Sbjct: 359 IESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 704 ------TISY-----AQEAACNHNQRLHAKFQLPRVNSKKLKGWPGTLRTDWRSYIYKLQ 752
TIS + + LH + N K + Y Y
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSI-VDHYNIPKTFDSDDLIPPYLDQYFYSH- 476
Query: 753 AELGLHMEP----------ETI-----W-KQKMPIPRRCGLNPN---------SDI---- 783
+G H++ + + +QK+ R N +
Sbjct: 477 --IGHHLKNIEHPERMTLFRMVFLDFRFLEQKI---RHDSTAWNASGSILNTLQQLKFYK 531
Query: 784 --IKVNENNIKRINSFNIYFLAPPRPSSQVVPTEVCRTSTTIQIRFRKNYFSEKNGAIIY 841
I N+ +R+ + + FL P+ ++ ++ ++I ++ AI
Sbjct: 532 PYICDNDPKYERLVNAILDFL--PKIEENLICSKYTD---LLRIA-----LMAEDEAIFE 581
Score = 48.3 bits (114), Expect = 2e-05
Identities = 88/620 (14%), Positives = 177/620 (28%), Gaps = 226/620 (36%)
Query: 15 EGLLASSNYYSF--SCVIAELQVPG--------CLSMLRRSWQPLSIPITKSRDEPTQCD 64
E +L + Y F S + E + P L Q + SR +P
Sbjct: 84 EEVLRIN--YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA-KYNVSRLQPY--- 137
Query: 65 MSEGLETRQNLSGPEPLP-------------VLDLTAVMDDKTGDLF---ISW------- 101
L+ RQ L P + L + K I W
Sbjct: 138 ----LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 102 KPDN--ASYQDMY------------------------KISIKSILLEEEHQKQFLMGFLG 135
P+ Q + + ++ +L + ++ L+ L
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LL 251
Query: 136 D-CDNGSKISYVEIETLNGDSNQMFV---DKTEYVLESLLPGRKYSINVQAVSNGM---E 188
+ + +K N ++ + K V + L I++ S + E
Sbjct: 252 NVQN--AKA----WNAFNLSC-KILLTTRFKQ--VTDFLSAATTTHISLDHHSMTLTPDE 302
Query: 189 SPSF------PIIEDLRPIE------FGLNISWKS--DVNSRQDNFEVIYNRNDTITEDP 234
S +DL P E L+I +S D + DN++ + D +T
Sbjct: 303 VKSLLLKYLDCRPQDL-PREVLTTNPRRLSIIAESIRDGLATWDNWK--HVNCDKLT--- 356
Query: 235 ITVVTTDSKLLLENLYPGAGYSIQVFAISHGLRSEPHDYFQ--AVYPK----PPTNLTLE 288
T++ + L L P +E F +V+P P L
Sbjct: 357 -TII----ESSLNVLEP----------------AEYRKMFDRLSVFPPSAHIPTI--LLS 393
Query: 289 KTSSNAVLVKWKEP----VGSIFTE---YSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVP 341
++ W + V + + YS+ + ++ T + +P++ L+ ++ +
Sbjct: 394 ------LI--WFDVIKSDVMVVVNKLHKYSLVEKQPKEST-ISIPSIYLELKVKLENEYA 444
Query: 342 GEKCMIQVNSVSYSVESAHPLQINHTISPNPA-----TYVA---ALVDASNVTLEFPRP- 392
+ ++ Y++ + + P +++ ++ F
Sbjct: 445 LHRSIVD----HYNIPKTFD---SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 393 ------EGRIEYYLVTWRGIGPEA---TSTELFTKNVT-NDPEDKDKHVHILIDQLTPGV 442
E +I + W G + + + NDP+ ++ V+ ++D
Sbjct: 498 LDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY-ERLVNAILD------ 550
Query: 443 KYQFTIRTVSYNLESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQNSNHFDFYR 502
F +P IE ++ S + D R
Sbjct: 551 ---F--------------------LPKIEENLI------------------CSKYTDLLR 569
Query: 503 FTLSEPDIPVIEKAANDTDR 522
L D + E+A R
Sbjct: 570 IALMAEDEAIFEEAHKQVQR 589
Score = 47.5 bits (112), Expect = 3e-05
Identities = 77/507 (15%), Positives = 142/507 (28%), Gaps = 166/507 (32%)
Query: 758 HMEPETIWKQKMPIPRRCGLNPNSDIIKVNENNIKRINSFNIYFLAP-PRP--SSQVV-- 812
HM+ ET Q DI+ V E+ +F+ + P+ S + +
Sbjct: 6 HMDFETGEHQ----------YQYKDILSVFEDAFVD--NFDCKDVQDMPKSILSKEEIDH 53
Query: 813 ----PTEVCRT-----------STTIQIRF-----RKNY--FSEKNGAIIYYTVIVAEDD 850
V T +Q +F R NY I
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQ-KFVEEVLRINYKFLMSP----IKTEQRQPSMM 108
Query: 851 SKNSSGLEMPSWRDVQAYSVWPPYQV--LEPF----QFFKNMSVEDFTIGEESCEGKTGY 904
++ + D Q V+ Y V L+P+ Q + + +G G
Sbjct: 109 TRMYIEQRDRLYNDNQ---VFAKYNVSRLQPYLKLRQALLELRPAKNVL----IDGVLG- 160
Query: 905 CNGPLKSGSTYKVKIRAFTTPDKFTDTAYSFPISTGWYNF-------ALLGQDQD----- 952
G K+ V ++ K + W N +L Q
Sbjct: 161 S-G--KTWVALDV-CLSYKVQCKMDFKIF-------WLNLKNCNSPETVLEMLQKLLYQI 209
Query: 953 ------------NTPLVVGITIPFILVLI----LCMTVFILRSRRKNVRKTTESRNADNM 996
N L + + L+ + +L NV+ ++ +
Sbjct: 210 DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL----NVQ---NAKAWNAF 262
Query: 997 SLQDSIVETSRPIRLENF---AEHYRIMSADSDFRFSE-EFEEL--KHVGREQSCTAADL 1050
+L I+ T+R ++ +F A I + E + L K++ C DL
Sbjct: 263 NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD----CRPQDL 318
Query: 1051 P---CNR-P-------------KNRFTNILPYDHSRFK---------LQPVDDEEGSDYI 1084
P P + N + + L+P + + D +
Sbjct: 319 PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 1085 -----NANYVPGHNSPRRSGTLIALDRILQSI--NHSDVVDIFGIVYHMRKERVWMVQTE 1137
+A+ +P + L S+ D+ +V + K + Q +
Sbjct: 379 SVFPPSAH-IP-------TILL--------SLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 1138 QQYICIHQCLLAVLEGNENQLPLREIH 1164
+ I I L + EN+ +H
Sbjct: 423 ESTISIPSIYLELKVKLENE---YALH 446
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 50.3 bits (120), Expect = 1e-07
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 14/106 (13%)
Query: 559 PEPITRINATEITDTSVSLTWDSP-------RGEYNAFEVQY---LNTEGFLIQNLTLHT 608
P + A +T +V ++W E + V++ + T
Sbjct: 19 MLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSL 78
Query: 609 SIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPG 654
S LKP+ Y F+V+V SS S+ A T+E+
Sbjct: 79 SYTATGLKPNTMYEFSVMVTKNRRSS--TWSMTAHA--TTYEASGP 120
Score = 45.2 bits (107), Expect = 8e-06
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV------GSIFTEYSIRYRTEEDKTWVRLPNVGTSL 332
PP + + +AV V W + S Y++R+RT + TSL
Sbjct: 19 MLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSL 78
Query: 333 EAEVTDMVPG 342
T + P
Sbjct: 79 SYTATGLKPN 88
Score = 34.8 bits (80), Expect = 0.033
Identities = 7/48 (14%), Positives = 12/48 (25%)
Query: 143 ISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESP 190
+ + + + Y L P Y +V N S
Sbjct: 58 VRWRTSFSASAKYKSEDTTSLSYTATGLKPNTMYEFSVMVTKNRRSST 105
Score = 29.1 bits (65), Expect = 3.8
Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 6/72 (8%)
Query: 205 LNISW------KSDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQ 258
+ +SW K+ S + V + + + + + TT L P Y
Sbjct: 35 VRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDTTSLSYTATGLKPNTMYEFS 94
Query: 259 VFAISHGLRSEP 270
V + S
Sbjct: 95 VMVTKNRRSSTW 106
Score = 27.9 bits (62), Expect = 8.4
Identities = 11/76 (14%), Positives = 19/76 (25%), Gaps = 11/76 (14%)
Query: 394 GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSY 453
+ Y V WR + + + L P Y+F++
Sbjct: 51 SEVRLYTVRWRTSFSASAKYKSEDTTSLS----------YTATGLKPNTMYEFSVMVTKN 100
Query: 454 NLESGV-TSLSARTMP 468
S + A T
Sbjct: 101 RRSSTWSMTAHATTYE 116
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 49.7 bits (119), Expect = 2e-07
Identities = 16/89 (17%), Positives = 29/89 (32%), Gaps = 10/89 (11%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEP----VGSIFTEYSIRYR---TEEDKTWVRLPNVGTSLE 333
P E S +++KW + + I YR ++ D + R G+
Sbjct: 7 GPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQW 66
Query: 334 AEVTDMVPGEKCMIQV---NSVSYSVESA 359
+ + P I++ N S S
Sbjct: 67 HMIGHLQPETSYDIKMQCFNEGGESEFSN 95
Score = 36.6 bits (85), Expect = 0.006
Identities = 12/72 (16%), Positives = 22/72 (30%), Gaps = 11/72 (15%)
Query: 565 INATEITDTSVSLTWDSP-----RGEYNAFEVQYLNT---EGFLIQNLTL---HTSIVIG 613
++DT + L W F + Y T + + +IG
Sbjct: 11 AYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHMIG 70
Query: 614 DLKPHRNYTFTV 625
L+P +Y +
Sbjct: 71 HLQPETSYDIKM 82
Score = 36.2 bits (84), Expect = 0.008
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 142 KISYVEIETLNGDSNQMFV---DKTEYVLESLLPGRKYSINVQAVSNGMESP-SFPII 195
I Y ++ N + V K +++ L P Y I +Q + G ES S +I
Sbjct: 41 YIYYRPTDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMI 98
Score = 34.7 bits (80), Expect = 0.027
Identities = 12/76 (15%), Positives = 26/76 (34%), Gaps = 10/76 (13%)
Query: 205 LNISWK----SDVNSRQDNFEVIYNRNDTITE---DPITVVTTDSKLLLENLYPGAGYSI 257
+ + W S+ N+ F + Y D+ + V + ++ +L P Y I
Sbjct: 21 IMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYDI 80
Query: 258 QVFAIS---HGLRSEP 270
++ + S
Sbjct: 81 KMQCFNEGGESEFSNV 96
Score = 30.8 bits (70), Expect = 0.62
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 3/56 (5%)
Query: 500 FYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVW---TVADGVLSTPIQ 552
+YR T S+ D + + +L P Y+ + + S +
Sbjct: 43 YYRPTDSDNDSDYKRDVVEGSKQWHMIGHLQPETSYDIKMQCFNEGGESEFSNVMI 98
Score = 29.6 bits (67), Expect = 1.5
Identities = 20/121 (16%), Positives = 34/121 (28%), Gaps = 37/121 (30%)
Query: 803 APPRPSSQVVPTEVCRTSTTIQIRFRKNYFSEKNGAIIYYTVIVAEDDSKNSSGLEMPSW 862
P V + T I +++ S N I + + DS N S
Sbjct: 3 TPITGPHIAYTEAV--SDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDS------- 53
Query: 863 RDVQAYSVWPPYQVLEPFQFFKNMSVEDFTIGEESCEGKTGYCNGPLKSGSTYKVKIRAF 922
D + V S + IG L+ ++Y +K++ F
Sbjct: 54 -DYKRDVVEG--------------SKQWHMIGH-------------LQPETSYDIKMQCF 85
Query: 923 T 923
Sbjct: 86 N 86
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 50.1 bits (120), Expect = 2e-07
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 9/87 (10%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTW--VRLPNVGTSLEAE 335
P ++ SS +LV+WKEP G I Y + Y + + NV S
Sbjct: 21 APRDVQARMLSSTTILVQWKEPEEPNGQI-QGYRVYYTMDPTQHVNNWMKHNVADSQITT 79
Query: 336 VTDMVPGEKCMIQV---NSVSYSVESA 359
+ ++VP + ++V S+ S+
Sbjct: 80 IGNLVPQKTYSVKVLAFTSIGDGPLSS 106
Score = 42.8 bits (101), Expect = 6e-05
Identities = 14/74 (18%), Positives = 29/74 (39%), Gaps = 8/74 (10%)
Query: 560 EPITRINATEITDTSVSLTWDSP---RGEYNAFEVQY-----LNTEGFLIQNLTLHTSIV 611
+ A ++ T++ + W P G+ + V Y + ++ N+
Sbjct: 20 SAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQITT 79
Query: 612 IGDLKPHRNYTFTV 625
IG+L P + Y+ V
Sbjct: 80 IGNLVPQKTYSVKV 93
Score = 33.5 bits (77), Expect = 0.11
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 7/73 (9%)
Query: 205 LNISWK--SDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKL--LLENLYPGAGYSIQVF 260
+ + WK + N + + V Y + T + + NL P YS++V
Sbjct: 35 ILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVL 94
Query: 261 AIS---HGLRSEP 270
A + G S
Sbjct: 95 AFTSIGDGPLSSD 107
Score = 30.5 bits (69), Expect = 1.1
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 4/56 (7%)
Query: 500 FYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTV--WTVA-DGVLSTPIQ 552
+Y ++ ++ D+ + T NL P K Y+ V +T DG LS+ IQ
Sbjct: 55 YYTMDPTQHVNNWMKHNVADS-QITTIGNLVPQKTYSVKVLAFTSIGDGPLSSDIQ 109
Score = 29.3 bits (66), Expect = 2.8
Identities = 9/44 (20%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 142 KISYVEIETLNGDSNQMFV--DKTEYVLESLLPGRKYSINVQAV 183
++ Y T + ++ D + +L+P + YS+ V A
Sbjct: 53 RVYYTMDPTQHVNNWMKHNVADSQITTIGNLVPQKTYSVKVLAF 96
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 49.7 bits (119), Expect = 2e-07
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 4/74 (5%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAE 335
P + E+ +V + W+EP G I EY I+Y ++ + + A
Sbjct: 11 PSQVVVIRQERAGQTSVSLLWQEPEQPNGII-LEYEIKYYEKDKEMQSYSTLKAVTTRAT 69
Query: 336 VTDMVPGEKCMIQV 349
V+ + PG + + QV
Sbjct: 70 VSGLKPGTRYVFQV 83
Score = 47.7 bits (114), Expect = 8e-07
Identities = 21/73 (28%), Positives = 28/73 (38%), Gaps = 6/73 (8%)
Query: 559 PEPITRINATEITDTSVSLTWDSPR---GEYNAFEVQYLNTEGFLIQNLTL---HTSIVI 612
P + I TSVSL W P G +E++Y + + TL T +
Sbjct: 11 PSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATV 70
Query: 613 GDLKPHRNYTFTV 625
LKP Y F V
Sbjct: 71 SGLKPGTRYVFQV 83
Score = 36.9 bits (86), Expect = 0.005
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 6/85 (7%)
Query: 205 LNISWK--SDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAI 262
+++ W+ N +E+ Y D + T+ ++ + L PG Y QV A
Sbjct: 27 VSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRAR 86
Query: 263 S---HGLRSEPHDYFQAVYPKPPTN 284
+ G S+ + P P++
Sbjct: 87 TSAGCGRFSQAM-EVETGKPSGPSS 110
Score = 34.3 bits (79), Expect = 0.046
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 142 KISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAV-SNGMESPSFPI 194
+I Y E + + + T + L PG +Y V+A S G S +
Sbjct: 45 EIKYYEKDKEMQSYSTLKAVTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAM 98
Score = 32.3 bits (74), Expect = 0.25
Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 13/73 (17%)
Query: 380 VDASNVTLEFPRPE---GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILID 436
++V+L + PE G I Y + + E S T +
Sbjct: 22 AGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLKAVTT----------RATVS 71
Query: 437 QLTPGVKYQFTIR 449
L PG +Y F +R
Sbjct: 72 GLKPGTRYVFQVR 84
Score = 28.5 bits (64), Expect = 4.9
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 3/36 (8%)
Query: 520 TDRKVTFNNLTPGKLYNFTV--WTVA-DGVLSTPIQ 552
+ T + L PG Y F V T A G S ++
Sbjct: 64 VTTRATVSGLKPGTRYVFQVRARTSAGCGRFSQAME 99
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 52.0 bits (124), Expect = 2e-07
Identities = 33/189 (17%), Positives = 61/189 (32%), Gaps = 27/189 (14%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEPVGSI-FTEYSIRYRTE-----EDKTWVRLPNVG--TSL 332
P L++ T+ +L W + YS+ Y+ E W+
Sbjct: 9 APQQLSVLSTNMKHLL-MWSPVIAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGP 67
Query: 333 EAEVTD-MVPGEKCMIQV-----NSVSYSVESAHPLQINHTISPNPATYVAALVDASNVT 386
E +VTD + ++V + S HP TI P + D ++
Sbjct: 68 ECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITK--DGFHLV 125
Query: 387 LEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQF 446
+E + E+ + WR E K V + + + ++ + PG Y
Sbjct: 126 IELEDLGPQFEFLVAYWR----REPGAEEHVKMV------RSGGIPVHLETMEPGAAYCV 175
Query: 447 TIRTVSYNL 455
+T +
Sbjct: 176 KAQTFVKAI 184
Score = 40.1 bits (93), Expect = 0.002
Identities = 21/124 (16%), Positives = 42/124 (33%), Gaps = 18/124 (14%)
Query: 166 VLESLLPGRKYSINVQAVSNGMESP----SFPIIEDLRPIE--------FGLNISWKSDV 213
V + + Y++ V+A S P + G ++ + +
Sbjct: 71 VTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKDGFHLVIELED 130
Query: 214 NSRQDNFEVIYNRNDTITEDPITVV-TTDSKLLLENLYPGAGYSIQVFAIS-----HGLR 267
Q F V Y R + E+ + +V + + LE + PGA Y ++ +
Sbjct: 131 LGPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYSAF 190
Query: 268 SEPH 271
S+
Sbjct: 191 SQTE 194
Score = 39.7 bits (92), Expect = 0.002
Identities = 15/141 (10%), Positives = 46/141 (32%), Gaps = 8/141 (5%)
Query: 220 FEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAISHGLRSEPHDYFQAVYP 279
+E +Y + I ++ + +++ Y+++V A S
Sbjct: 46 YESLYTSHIWIPSSWCSLTEGPECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNR 105
Query: 280 K----PPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNV-GTSLEA 334
+ + + K + ++++ ++ E+ + Y E + V +
Sbjct: 106 QSTILTRPGMEITKDGFH-LVIELEDLGPQF--EFLVAYWRREPGAEEHVKMVRSGGIPV 162
Query: 335 EVTDMVPGEKCMIQVNSVSYS 355
+ M PG ++ + +
Sbjct: 163 HLETMEPGAAYCVKAQTFVKA 183
Score = 38.1 bits (88), Expect = 0.008
Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 8/106 (7%)
Query: 527 NNLTPGKLYNFTVWTVADGVLSTPIQRHDRLYPEPITRINA--TEITDTSVSLTWD-SPR 583
+++T YN V S + T + EIT L +
Sbjct: 73 DDITATVPYNLRVRATLGSQTSAWSILK-HPFNRQSTILTRPGMEITKDGFHLVIELEDL 131
Query: 584 GEYNAFEVQYL----NTEGFLIQNLTLHTSIVIGDLKPHRNYTFTV 625
G F V Y E + + + + ++P Y
Sbjct: 132 GPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKA 177
Score = 36.6 bits (84), Expect = 0.025
Identities = 15/114 (13%), Positives = 28/114 (24%), Gaps = 3/114 (2%)
Query: 434 LIDQLTPGVKYQFTIRTVSYNLESGVTSLSARTMPLIESEVL--VVNNQQSTDSVTLRYT 491
+ D +T V Y +R + S S+ + + + + + +
Sbjct: 71 VTDDITATVPYNLRVRATLGSQTSA-WSILKHPFNRQSTILTRPGMEITKDGFHLVIELE 129
Query: 492 PQNSNHFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVADG 545
+ EP K V + PG Y T
Sbjct: 130 DLGPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTFVKA 183
Score = 31.2 bits (70), Expect = 1.5
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 138 DNGSKISYVEIETLNGDSNQMFV-----DKTEYVLESLLPGRKYSINVQAVSNGMESPS 191
D G + ++ + V LE++ PG Y + Q + S
Sbjct: 130 DLGPQFEFLVAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTFVKAIGRYS 188
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 49.7 bits (119), Expect = 2e-07
Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 4/70 (5%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTWVRL-PNVGTSLEA 334
P +LT+E + +KW+ P Y + Y E + WV
Sbjct: 9 TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 68
Query: 335 EVTDMVPGEK 344
V D+ G +
Sbjct: 69 TVKDLPTGAR 78
Score = 40.8 bits (96), Expect = 3e-04
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 8/76 (10%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNA----FEVQY--LNTEG--FLIQNLTLHTSI 610
+ ++TDT+ +L W P + V+Y +E +
Sbjct: 9 TSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGF 68
Query: 611 VIGDLKPHRNYTFTVI 626
+ DL F V+
Sbjct: 69 TVKDLPTGARILFRVV 84
Score = 30.4 bits (69), Expect = 1.0
Identities = 11/63 (17%), Positives = 20/63 (31%), Gaps = 7/63 (11%)
Query: 138 DNGSKISY--VEIETLNGDS----NQMFVDKTEYVLESLLPGRKYSINVQAV-SNGMESP 190
I VE + N+ V++ + ++ L G + V V G P
Sbjct: 35 IGAGGIDGYLVEYCLEGSEEWVPANKEPVERCGFTVKDLPTGARILFRVVGVNIAGRSEP 94
Query: 191 SFP 193
+
Sbjct: 95 ATL 97
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 50.0 bits (120), Expect = 2e-07
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 8/87 (9%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEPVGS----IFTEYSIRYRTEEDKTWVRLPNV-GTSLEAE 335
P NL+LE +S ++++ W+ P + T Y IRYR K+ V V GT L
Sbjct: 21 APQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQL 80
Query: 336 VTDMVPGEKCMIQV---NSVSYSVESA 359
+ + G + +V +
Sbjct: 81 IEGLDRGTEYNFRVAALTINGTGPATD 107
Score = 37.3 bits (87), Expect = 0.007
Identities = 15/102 (14%), Positives = 34/102 (33%), Gaps = 13/102 (12%)
Query: 563 TRINATEITDTSVSLTWDSP-----RGEYNAFEVQYL-NTEGFLIQNLTL---HTSIVIG 613
++ S+ + W P G+ ++++Y + + + S +I
Sbjct: 23 QNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIE 82
Query: 614 DLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPGK 655
L Y F V + + + +S +T ES +
Sbjct: 83 GLDRGTEYNFRVAALTINGTGP--ATDWLS--AETFESDLDE 120
Score = 33.5 bits (77), Expect = 0.12
Identities = 16/88 (18%), Positives = 35/88 (39%), Gaps = 10/88 (11%)
Query: 205 LNISWK----SDVNSRQDNFEVIYNRNDTITEDPITVV-TTDSKLLLENLYPGAGYSIQV 259
+ I W+ + N + +++ Y + ++ T+V T L+E L G Y+ +V
Sbjct: 35 IMIHWQPPAPATQNGQITGYKIRYRKASRKSDVTETLVSGTQLSQLIEGLDRGTEYNFRV 94
Query: 260 FA---ISHGLRSEPHDY--FQAVYPKPP 282
A G ++ F++ +
Sbjct: 95 AALTINGTGPATDWLSAETFESDLDETR 122
Score = 32.7 bits (75), Expect = 0.25
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 4/56 (7%)
Query: 142 KISYVEIETLNGDSNQMFVD--KTEYVLESLLPGRKYSINVQAV-SNGMESPSFPI 194
KI Y + D + V + ++E L G +Y+ V A+ NG + +
Sbjct: 55 KIRYRKASR-KSDVTETLVSGTQLSQLIEGLDRGTEYNFRVAALTINGTGPATDWL 109
Score = 30.4 bits (69), Expect = 1.6
Identities = 11/56 (19%), Positives = 17/56 (30%), Gaps = 5/56 (8%)
Query: 500 FYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTV--WTVA-DGVLSTPIQ 552
YR + D+ + L G YNF V T+ G + +
Sbjct: 57 RYRKASRKSDVTETLVSGTQL--SQLIEGLDRGTEYNFRVAALTINGTGPATDWLS 110
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 52.0 bits (124), Expect = 2e-07
Identities = 34/164 (20%), Positives = 54/164 (32%), Gaps = 20/164 (12%)
Query: 205 LNISWKSDVNSRQD-NFEVIYNR----NDTITEDPITVVTTDSKLLLENLYPGAGYSIQV 259
W+ + N+ + Y+R D IT + Y + V
Sbjct: 20 FTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNSCHFGKQYTSMWRTYIMMV 79
Query: 260 FAISHGLRSEPH----DYFQAVYPKPPTNLTLEKTSSNA----VLVKWKEPV------GS 305
A + S D V P PP L +E + +KW P G
Sbjct: 80 NATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGW 139
Query: 306 IFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQV 349
Y IR + E+ W + G E ++ + PG+K ++QV
Sbjct: 140 FTLLYEIRLKPEKAAEW-EIHFAGQQTEFKILSLHPGQKYLVQV 182
Score = 37.8 bits (87), Expect = 0.010
Identities = 33/189 (17%), Positives = 54/189 (28%), Gaps = 27/189 (14%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV-GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAE-- 335
P P + W+ G + T YS+ Y E + P+ T
Sbjct: 4 PGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNSCH 63
Query: 336 --VTDMVPGEKCMIQV---NSVSYSVESAHPLQINHTISPNPATYVAALVDASNVTLEFP 390
++ V N + S + + + + P+P + +E
Sbjct: 64 FGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPP---------LELAVEVK 114
Query: 391 RPEGRIEYYLVTWRGIGPEATSTELFT----------KNVTNDPEDKDKHVHILIDQLTP 440
+PE R Y + W T FT K + + I L P
Sbjct: 115 QPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAEWEIHFAGQQTEFKILSLHP 174
Query: 441 GVKYQFTIR 449
G KY +R
Sbjct: 175 GQKYLVQVR 183
Score = 33.5 bits (76), Expect = 0.26
Identities = 16/150 (10%), Positives = 34/150 (22%), Gaps = 19/150 (12%)
Query: 495 SNHFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTP---- 550
++ E + F + + A + +
Sbjct: 33 PTNYSLTYHREGETLMHECPDYITGGPNSCHFGKQYTSMWRTYIMMVNATNQMGSSFSDE 92
Query: 551 --IQRHDRLYPEPITRINAT----EITDTSVSLTWDSPRGEYNA-------FEVQY--LN 595
+ + P+P + E + + W P +E++
Sbjct: 93 LYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYEIRLKPEK 152
Query: 596 TEGFLIQNLTLHTSIVIGDLKPHRNYTFTV 625
+ I T I L P + Y V
Sbjct: 153 AAEWEIHFAGQQTEFKILSLHPGQKYLVQV 182
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 50.1 bits (120), Expect = 3e-07
Identities = 17/89 (19%), Positives = 28/89 (31%), Gaps = 10/89 (11%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEPVGS----IFTEYSIRYR---TEEDKTWVRLPNVGTSLE 333
PP + S V V W P + T+YS+ Y E+ V
Sbjct: 21 PPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSS 80
Query: 334 AEVTDMVPGEKCMIQV---NSVSYSVESA 359
++ + + + V V ES+
Sbjct: 81 WDLVGLEKWTEYRVWVRAHTDVGPGPESS 109
Score = 40.1 bits (94), Expect = 8e-04
Identities = 19/99 (19%), Positives = 28/99 (28%), Gaps = 12/99 (12%)
Query: 205 LNISWK----SDVNSRQDNFEVIYNRNDTITEDPITVVTTDSK---LLLENLYPGAGYSI 257
+ +SW N + V Y D V + L L Y +
Sbjct: 35 VRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRV 94
Query: 258 QVFA---ISHGLRSEPHDY--FQAVYPKPPTNLTLEKTS 291
V A + G S P + V PP + +S
Sbjct: 95 WVRAHTDVGPGPESSPVLVRTDEDVPSGPPRKVESGPSS 133
Score = 39.7 bits (93), Expect = 0.001
Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 15/103 (14%)
Query: 563 TRINATEITDTSVSLTWDSP-----RGEYNAFEVQYLNTEGFLIQNLTLH------TSIV 611
++ + T+V ++W P G + V Y +G + +S
Sbjct: 23 QKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWD 82
Query: 612 IGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPG 654
+ L+ Y V + S PV +T E +P
Sbjct: 83 LVGLEKWTEYRVWVRAHTDVGPGP--ESSPVL--VRTDEDVPS 121
Score = 32.0 bits (73), Expect = 0.39
Identities = 9/58 (15%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 142 KISYVEIETLNGDSNQMFV---DKTEYVLESLLPGRKYSINVQAV-SNGMESPSFPII 195
++Y ++ + + + + + + L L +Y + V+A G S P++
Sbjct: 55 SVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVL 112
Score = 31.6 bits (72), Expect = 0.65
Identities = 9/56 (16%), Positives = 13/56 (23%), Gaps = 3/56 (5%)
Query: 500 FYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTV--WTVA-DGVLSTPIQ 552
Y E + + L Y V T G S+P+
Sbjct: 57 AYEAVDGEDRGRHVVDGISREHSSWDLVGLEKWTEYRVWVRAHTDVGPGPESSPVL 112
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 52.6 bits (125), Expect = 3e-07
Identities = 35/258 (13%), Positives = 70/258 (27%), Gaps = 42/258 (16%)
Query: 136 DCDNGSKISYVEIETLNGDSNQMFVDKTEYVLES-LLPGRKYSINVQAVSNGMESPSFPI 194
+ + Y ++ +T +E L + Q +N E PS +
Sbjct: 29 GASSNCSLWYFS--HFGDKQDKKIAPETRRSIEVPLNERICLQVGSQCSTNESEKPSILV 86
Query: 195 IEDLRPIEFG-----------------LNISWKSDVNSRQDNFEVIYNRNDT------IT 231
+ + P E + SW N+ D +Y + +
Sbjct: 87 EKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRNTSPDTNYTLYYWHRSLEKIHQCE 146
Query: 232 EDPITVVTTDSKLLLENLYPGAG--YSIQVFAISHGLRSEP----HDYFQAVYPKPPTNL 285
L + + +S+Q+ + + +P V P PP
Sbjct: 147 NIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAGKIKPSFNIVPLTSRVKPDPPHIK 206
Query: 286 TLEKTSSNAVLVKWKEPVG--SIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGE 343
L ++ + V+W+ P S Y + + +T + E
Sbjct: 207 NLS-FHNDDLYVQWENPQNFISRCLFYEVEVNNSQTETH-------NVFYVQEAKCENPE 258
Query: 344 KCMIQVNSVSYSVESAHP 361
N+ + V P
Sbjct: 259 FERNVENTSCFMVPGVLP 276
Score = 44.5 bits (104), Expect = 1e-04
Identities = 32/287 (11%), Positives = 80/287 (27%), Gaps = 48/287 (16%)
Query: 383 SNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHV---HILIDQLT 439
+N+++ + TW +++ L+ + D +DK + L
Sbjct: 8 TNLSVSVENLC----TVIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPETRRSIEVPLN 63
Query: 440 PGVKYQFTIRTVSYNLESGVTSLSARTMPLIESEVLVVNNQ------QSTDSVTL----- 488
+ Q + ES S+ + +
Sbjct: 64 ERICLQV--GSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPG 121
Query: 489 RYTPQNSNHFDFYRFTLSEP--DIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVADGV 546
R T ++N+ +Y E I + + +V +
Sbjct: 122 RNTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDN 181
Query: 547 LSTP------IQRHDRLYPEPITRINATEITDTSVSLTWDSPRGEYNA---FEVQYLNTE 597
+ R+ P+P N + + + + W++P+ + +EV+ N++
Sbjct: 182 AGKIKPSFNIVPLTSRVKPDPPHIKNLS-FHNDDLYVQWENPQNFISRCLFYEVEVNNSQ 240
Query: 598 G----------------FLIQNLTLHTSIVIGDLKPHRNYTFTVIVR 628
+N+ + ++ + P T + V+
Sbjct: 241 TETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVK 287
Score = 41.4 bits (96), Expect = 0.001
Identities = 29/287 (10%), Positives = 75/287 (26%), Gaps = 36/287 (12%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMV 340
P TNL++ + V+ W P G+ + S+ Y + + T +
Sbjct: 6 PVTNLSVSVENLCTVIWTWNPPEGAS-SNCSLWYFSHFGDKQDKKIAPETRRSI-EVPLN 63
Query: 341 PGEKCMIQVN-----SVSYSVESAHPLQINHTISPNPATYVAALV-DASNVTLEF--PRP 392
+ S S+ + + T + + + S + + R
Sbjct: 64 ERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRN 123
Query: 393 EGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVS 452
Y + + S E + E + + ++ Q +++ +
Sbjct: 124 TSPDTNYTLYYW-----HRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMV 178
Query: 453 YNLESGVTSLSA---RTMPLIESEVLVVNNQQSTDSVTL-----------------RYTP 492
+ + T + + N D + +
Sbjct: 179 KDNAGKIKPSFNIVPLTSRVKPDPPHIKNLSFHNDDLYVQWENPQNFISRCLFYEVEVNN 238
Query: 493 QNSNHFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTV 539
+ + + ++ + P E+ +T + P L +
Sbjct: 239 SQTETHNVFYVQEAKCENPEFERNVENTSC-FMVPGVLPDTLNTVRI 284
Score = 36.0 bits (82), Expect = 0.068
Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 7/97 (7%)
Query: 561 PITRINATEITDTSVSLTWDSPRGEYNAFEVQY---LNTEGFLIQNLTLHTSIVIGDLKP 617
P+T ++ + +V TW+ P G + + Y + SI + L
Sbjct: 6 PVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPETRRSIEV-PLNE 64
Query: 618 HRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPG 654
+ S+ V E P
Sbjct: 65 RICLQVGSQCSTNESEK---PSILVEKCISPPEGDPE 98
Score = 32.6 bits (73), Expect = 0.83
Identities = 34/228 (14%), Positives = 65/228 (28%), Gaps = 53/228 (23%)
Query: 76 SGPEPLPVLDLTAVMDDKTGDLFISWKPDNASYQDM-YKISIKSILLEEEHQKQFLMGFL 134
G V +L + + + + SW P + D Y + LE+ HQ
Sbjct: 94 EGDPESAVTELQCIWHNLS-YMKCSWLPGRNTSPDTNYTLYYWHRSLEKIHQ-------- 144
Query: 135 GDCDNGSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESPSFPI 194
C+N + G D T+ ++S+ + N +
Sbjct: 145 --CENIFR---------EGQYFGCSFDLTK---VKDSSFEQHSVQIMVKDNAGKIKPSFN 190
Query: 195 IED--------------LRPIEFGLNISWK--SDVNSRQDNFEVIYNRNDT--------- 229
I L L + W+ + SR +EV N + T
Sbjct: 191 IVPLTSRVKPDPPHIKNLSFHNDDLYVQWENPQNFISRCLFYEVEVNNSQTETHNVFYVQ 250
Query: 230 ----ITEDPITVVTTDSKLLLENLYPGAGYSIQVFAISHGLRSEPHDY 273
+ V S ++ + P ++++ ++ L E
Sbjct: 251 EAKCENPEFERNVENTSCFMVPGVLPDTLNTVRIRVKTNKLCYEDDKL 298
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 52.9 bits (126), Expect = 3e-07
Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 10/112 (8%)
Query: 248 NLYPGAGYSIQVFAISHGLRSE----PHDYFQAVYPKPPTNLTLE--KTSSNAVLVKWKE 301
+ Y + + S + P PP N+T+ + + V W++
Sbjct: 162 PEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQD 221
Query: 302 PV----GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQV 349
P + +RYR E KT+ + D G + ++Q+
Sbjct: 222 PHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQL 273
Score = 39.1 bits (90), Expect = 0.007
Identities = 28/262 (10%), Positives = 66/262 (25%), Gaps = 53/262 (20%)
Query: 49 LSIPITKSRDEPT-QCDMSEGLETRQNLSGPEPLPVLDLTAVMDDKTGDLFISWKPDN-- 105
L + + D C + +L P L+ ++ W P +
Sbjct: 62 LLLRSVQLHDSGNYSCYRAGRPAGTVHLLVDVPPEEPQLSCFRKSPLSNVVCEWGPRSTP 121
Query: 106 ---ASYQDMYKISIKSILLEEEHQKQFLMGFLGDCDNGSKISYVEIETLNGDSNQMFVDK 162
+ + S + + Q +Q
Sbjct: 122 SLTTKAVLLVRKFQNSPAEDFQEPCQ--------------------------YSQESQKF 155
Query: 163 TEYVLESLLPGRKYSINVQAVSNGMESPSFPIIEDLRPIEFG-----------------L 205
+ + Y +++ S+ S I L
Sbjct: 156 SCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWL 215
Query: 206 NISWKS----DVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFA 261
+++W+ + + + FE+ Y + T V ++ + + G + +Q+ A
Sbjct: 216 SVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRA 275
Query: 262 ISHGLRSEPHDYFQAVYPKPPT 283
+ E ++ P T
Sbjct: 276 QEEFGQGEWSEWSPEAMGTPWT 297
Score = 36.0 bits (82), Expect = 0.059
Identities = 21/166 (12%), Positives = 46/166 (27%), Gaps = 23/166 (13%)
Query: 483 TDSVTLRYTPQNSNHFD-----FYRFTLSEPDIPVIEKAANDTDRK----VTFNNLTPGK 533
+V + P+++ R + P E + +
Sbjct: 108 LSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSS 167
Query: 534 LYNFTVW-TVADG-----VLSTPIQRHDRLYPEPITRINATEITDTSVSLTWDSPRGEYN 587
Y ++ + G + + P + A +S+TW P +
Sbjct: 168 FYIVSMCVASSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNS 227
Query: 588 A-----FEVQY--LNTEGFLIQNLT-LHTSIVIGDLKPHRNYTFTV 625
+ FE++Y ++ F + L VI D + +
Sbjct: 228 SFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQL 273
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 49.3 bits (118), Expect = 3e-07
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 12/91 (13%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEPVGS----IFTEYSIRYRT-----EEDKTWVRLPNVGTS 331
PP ++TL+ +S ++ V WK P + Y I YR + V + G S
Sbjct: 18 PPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDS 77
Query: 332 LEAEVTDMVPGEKCMIQV---NSVSYSVESA 359
+ ++ + + V N S+
Sbjct: 78 EVYTLDNLKKFAQYGVVVQAFNRAGTGPSSS 108
Score = 37.0 bits (86), Expect = 0.006
Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 17/105 (16%)
Query: 563 TRINATEITDTSVSLTWDSP-----RGEYNAFEVQY-----LNTEGFLIQNLTLH---TS 609
+ +T S+ +TW +P G +++ Y + + I +
Sbjct: 20 MDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEV 79
Query: 610 IVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPG 654
+ +LK Y V + + S ++ T ES P
Sbjct: 80 YTLDNLKKFAQYGVVVQAFNRAGTGP--SSSEIN--ATTLESGPS 120
Score = 32.0 bits (73), Expect = 0.36
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 142 KISYVEIETLNGDSNQMFV-----DKTEYVLESLLPGRKYSINVQAV-SNGMESPSFPI 194
+I Y E + + D Y L++L +Y + VQA G S I
Sbjct: 52 QIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEI 110
Score = 29.3 bits (66), Expect = 2.8
Identities = 14/78 (17%), Positives = 24/78 (30%), Gaps = 12/78 (15%)
Query: 205 LNISWK----SDVNSRQDNFEVIYNRNDTITEDP-----ITVVTTDSKLLLENLYPGAGY 255
+ ++WK N +++ Y N + + L+NL A Y
Sbjct: 32 IQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKKFAQY 91
Query: 256 SIQVFA---ISHGLRSEP 270
+ V A G S
Sbjct: 92 GVVVQAFNRAGTGPSSSE 109
Score = 28.9 bits (65), Expect = 4.8
Identities = 12/52 (23%), Positives = 17/52 (32%), Gaps = 3/52 (5%)
Query: 504 TLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTV--WTVA-DGVLSTPIQ 552
S ++E A T +NL Y V + A G S+ I
Sbjct: 60 PGSNGQYSIVEMKATGDSEVYTLDNLKKFAQYGVVVQAFNRAGTGPSSSEIN 111
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 49.1 bits (117), Expect = 3e-07
Identities = 19/106 (17%), Positives = 37/106 (34%), Gaps = 14/106 (13%)
Query: 559 PEPITRINATEITDTSVSLTWDSP-------RGEYNAFEVQY---LNTEGFLIQNLTLHT 608
P + A+ ++ ++ +TW + + V++ +
Sbjct: 9 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 68
Query: 609 SIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPG 654
S ++ LKP+ Y F+V+V G SS S+ T E
Sbjct: 69 SYLVTGLKPNTLYEFSVMVTKGRRSST--WSMTAHG--TTFELSGP 110
Score = 42.1 bits (99), Expect = 8e-05
Identities = 12/70 (17%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV------GSIFTEYSIRYRTEEDKTWVRLPNVGTSL 332
PP + S + + + W + + Y++R++T T+L
Sbjct: 9 MMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL 68
Query: 333 EAEVTDMVPG 342
VT + P
Sbjct: 69 SYLVTGLKPN 78
Score = 36.3 bits (84), Expect = 0.011
Identities = 7/49 (14%), Positives = 12/49 (24%)
Query: 142 KISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESP 190
+ + N Y++ L P Y +V S
Sbjct: 47 TVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSST 95
Score = 30.2 bits (68), Expect = 1.2
Identities = 12/72 (16%), Positives = 18/72 (25%), Gaps = 6/72 (8%)
Query: 205 LNISW------KSDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQ 258
+ I+W K + + V + N T L+ L P Y
Sbjct: 25 IRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTLSYLVTGLKPNTLYEFS 84
Query: 259 VFAISHGLRSEP 270
V S
Sbjct: 85 VMVTKGRRSSTW 96
Score = 27.9 bits (62), Expect = 8.6
Identities = 11/41 (26%), Positives = 12/41 (29%), Gaps = 3/41 (7%)
Query: 515 KAANDTDRKVTFNNLTPGKLYNFTVWTVA---DGVLSTPIQ 552
K AN T L P LY F+V S
Sbjct: 61 KNANATTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAH 101
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 48.6 bits (116), Expect = 4e-07
Identities = 18/74 (24%), Positives = 28/74 (37%), Gaps = 7/74 (9%)
Query: 559 PEPITRINATEITDTSVSLTWDSPR---GEYNAFEVQY----LNTEGFLIQNLTLHTSIV 611
P ++ I T + +S+SL W PR G +EV+Y + T
Sbjct: 8 PPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAE 67
Query: 612 IGDLKPHRNYTFTV 625
+ LK +Y V
Sbjct: 68 LRGLKRGASYLVQV 81
Score = 44.4 bits (105), Expect = 1e-05
Identities = 12/87 (13%), Positives = 35/87 (40%), Gaps = 6/87 (6%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKTWVRLPNV-GTSLEAE 335
P +++ + ++S +++ + W P +Y ++Y + + + + + AE
Sbjct: 8 PPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAE 67
Query: 336 VTDMVPGEKCMIQV---NSVSYSVESA 359
+ + G ++QV + Y
Sbjct: 68 LRGLKRGASYLVQVRARSEAGYGPFGQ 94
Score = 33.2 bits (76), Expect = 0.11
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 6/73 (8%)
Query: 205 LNISWK--SDVNSRQDNFEVIYNRNDTITEDPITVVTTDS-KLLLENLYPGAGYSIQVFA 261
L+++W + ++EV Y+ + + T + L L GA Y +QV A
Sbjct: 24 LSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAELRGLKRGASYLVQVRA 83
Query: 262 IS---HGLRSEPH 271
S +G + H
Sbjct: 84 RSEAGYGPFGQEH 96
Score = 32.4 bits (74), Expect = 0.18
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 12/88 (13%)
Query: 365 NHTISPNPATYVAALVDASNVTLEFPRPE---GRIEYYLVTWRGIGPEATSTELFTKNVT 421
+ P + S+++L + P G + Y V + G E S+ F K
Sbjct: 4 GSSGPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSE 63
Query: 422 NDPEDKDKHVHILIDQLTPGVKYQFTIR 449
N + L G Y +R
Sbjct: 64 N---------RAELRGLKRGASYLVQVR 82
Score = 30.1 bits (68), Expect = 1.4
Identities = 12/78 (15%), Positives = 24/78 (30%), Gaps = 7/78 (8%)
Query: 482 STDSVTLRYT-PQNSN-HFDFYR--FTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNF 537
S S++L + P+ + Y + + P + ++ + L G Y
Sbjct: 20 SPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAELRGLKRGASYLV 79
Query: 538 TV--WTVA-DGVLSTPIQ 552
V + A G
Sbjct: 80 QVRARSEAGYGPFGQEHH 97
Score = 27.8 bits (62), Expect = 8.4
Identities = 11/64 (17%), Positives = 19/64 (29%), Gaps = 5/64 (7%)
Query: 138 DNGSKISY-VEIETLNGDSNQMF----VDKTEYVLESLLPGRKYSINVQAVSNGMESPSF 192
+G+ + Y V+ + + L L G Y + V+A S P
Sbjct: 34 PSGAVLDYEVKYHEKGAEGPSSVRFLKTSENRAELRGLKRGASYLVQVRARSEAGYGPFG 93
Query: 193 PIIE 196
Sbjct: 94 QEHH 97
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 49.3 bits (118), Expect = 5e-07
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 8/92 (8%)
Query: 265 GLRSEPHDYFQAVY--PKPPTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTE-- 317
G S P + + P PP + + + +V + W+ P G I Y I +R
Sbjct: 12 GSPSHPPILERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGII-LAYQITHRLNTT 70
Query: 318 EDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQV 349
T ++ + T + P + ++
Sbjct: 71 TANTATVEVLAPSARQYTATGLKPESVYLFRI 102
Score = 44.3 bits (105), Expect = 2e-05
Identities = 19/75 (25%), Positives = 25/75 (33%), Gaps = 8/75 (10%)
Query: 559 PEPITRINATEITDTSVSLTWDSPR---GEYNAFEVQY--LNTEGFLIQNLTL---HTSI 610
P P I E+ TSV L W P G A+++ + T L
Sbjct: 28 PGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQY 87
Query: 611 VIGDLKPHRNYTFTV 625
LKP Y F +
Sbjct: 88 TATGLKPESVYLFRI 102
Score = 31.2 bits (71), Expect = 0.69
Identities = 11/65 (16%), Positives = 19/65 (29%), Gaps = 7/65 (10%)
Query: 138 DNGSKISYVEIETLNGDSNQMFV------DKTEYVLESLLPGRKYSINVQAV-SNGMESP 190
NG ++Y LN + +Y L P Y + A G
Sbjct: 54 PNGIILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRITAQTRKGWGEA 113
Query: 191 SFPII 195
+ ++
Sbjct: 114 AEALV 118
Score = 29.7 bits (67), Expect = 2.2
Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 11/81 (13%)
Query: 372 PATYVAALVDASNVTLEFPRPE---GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKD 428
P + V ++V L + P G I Y +T R A + + +
Sbjct: 31 PMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSA------ 84
Query: 429 KHVHILIDQLTPGVKYQFTIR 449
L P Y F I
Sbjct: 85 --RQYTATGLKPESVYLFRIT 103
Score = 29.7 bits (67), Expect = 2.6
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 7/86 (8%)
Query: 205 LNISWK--SDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKL--LLENLYPGAGYSIQVF 260
+ + W+ + N +++ + N T V S L P + Y ++
Sbjct: 44 VRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVLAPSARQYTATGLKPESVYLFRIT 103
Query: 261 AIS---HGLRSEPHDYFQAVYPKPPT 283
A + G +E P +
Sbjct: 104 AQTRKGWGEAAEALVVTTEKRSGPSS 129
Score = 29.7 bits (67), Expect = 2.6
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 17/63 (26%)
Query: 645 IFQTHESLPGKMDRTIVDTWHFVRFFQAEKFHPIDVQPGDITFEWSLPGSEQNGVIRKFT 704
+ +T + +PG +V+ + W P + NG+I +
Sbjct: 20 LERTLDDVPGP-----------PMGILFP-----EVRTTSVRLIWQPP-AAPNGIILAYQ 62
Query: 705 ISY 707
I++
Sbjct: 63 ITH 65
Score = 28.5 bits (64), Expect = 6.9
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 4/55 (7%)
Query: 500 FYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTV--WTVA-DGVLSTPI 551
+R + + +E + R+ T L P +Y F + T G + +
Sbjct: 64 THRLNTTTANTATVEVL-APSARQYTATGLKPESVYLFRITAQTRKGWGEAAEAL 117
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 48.5 bits (115), Expect = 5e-07
Identities = 15/79 (18%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNA---FEVQYLNTEGFLIQNLTLHTSIVIGDL 615
+ + A I+ TS++L W E ++ +++ N++ VI L
Sbjct: 8 AIQVFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHVAGETDSSNLNVSE-PRAVIPGL 66
Query: 616 KPHRNYTFTVIVRSGTESS 634
+ Y TV G
Sbjct: 67 RSSTFYNITVCPVLGDIEG 85
Score = 45.1 bits (106), Expect = 7e-06
Identities = 19/101 (18%), Positives = 33/101 (32%), Gaps = 5/101 (4%)
Query: 463 SARTMPLIESEVLVVNNQQSTDSVTLRYTPQNSNHFDFYRFTLS-EPDIPVIEKAANDTD 521
S + + +V VN S S+TL + ++ Y + + + ++
Sbjct: 3 SGSSGAIQVFDVTAVN--ISATSLTLIWKVSDNESSSNYTYKIHVAGETDSSNLNVSEP- 59
Query: 522 RKVTFNNLTPGKLYNFTVWTVADGVLSTPIQRHDRLYPEPI 562
+ L YN TV V + TP P P
Sbjct: 60 -RAVIPGLRSSTFYNITVCPVLGDIEGTPGFLQVHTPPVPS 99
Score = 37.7 bits (87), Expect = 0.003
Identities = 14/95 (14%), Positives = 29/95 (30%), Gaps = 3/95 (3%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEVTD 338
++T S+ ++ + WK + Y+ + + L A +
Sbjct: 8 AIQVFDVTAVNISATSLTLIWKVSDNESSSNYTYKIHVAGETDSSNLNVSEPR--AVIPG 65
Query: 339 MVPGEKCMIQVNSVSYSVESAHPLQINHTISPNPA 373
+ I V V +E P + P P+
Sbjct: 66 LRSSTFYNITVCPVLGDIEGT-PGFLQVHTPPVPS 99
Score = 37.4 bits (86), Expect = 0.004
Identities = 15/89 (16%), Positives = 28/89 (31%), Gaps = 11/89 (12%)
Query: 380 VDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLT 439
+ A+++TL + + + E S+ L + +I L
Sbjct: 19 ISATSLTLIWKVSDNESSSNYTYKIHVAGETDSSNLNV-SEP----------RAVIPGLR 67
Query: 440 PGVKYQFTIRTVSYNLESGVTSLSARTMP 468
Y T+ V ++E L T P
Sbjct: 68 SSTFYNITVCPVLGDIEGTPGFLQVHTPP 96
Score = 36.2 bits (83), Expect = 0.008
Identities = 17/102 (16%), Positives = 33/102 (32%), Gaps = 7/102 (6%)
Query: 184 SNGMESPSFPIIEDLRPIEFG---LNISWKSDVNSRQDNFEVIYNRNDTITEDPITVVTT 240
S+G + D+ + L + WK N N+ Y + D + +
Sbjct: 2 SSGSSGAI--QVFDVTAVNISATSLTLIWKVSDNESSSNYT--YKIHVAGETDSSNLNVS 57
Query: 241 DSKLLLENLYPGAGYSIQVFAISHGLRSEPHDYFQAVYPKPP 282
+ + ++ L Y+I V + + P P P
Sbjct: 58 EPRAVIPGLRSSTFYNITVCPVLGDIEGTPGFLQVHTPPVPS 99
Score = 33.9 bits (77), Expect = 0.057
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 139 NGSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESP 190
+ S +Y DS+ + V + V+ L Y+I V V +E
Sbjct: 35 SSSNYTYKIHVAGETDSSNLNVSEPRAVIPGLRSSTFYNITVCPVLGDIEGT 86
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 48.5 bits (116), Expect = 6e-07
Identities = 12/73 (16%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEV 336
P P + + N++ ++WK P GS + + + + +G+ + ++
Sbjct: 18 PDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKI 77
Query: 337 TDMVPGEKCMIQV 349
T + P C ++
Sbjct: 78 TKLSPAMGCKFRL 90
Score = 39.7 bits (93), Expect = 8e-04
Identities = 13/74 (17%), Positives = 24/74 (32%), Gaps = 6/74 (8%)
Query: 559 PEPITRINATEITDTSVSLTWDSPR---GEYNAFEVQYLNTEG---FLIQNLTLHTSIVI 612
P+ T S++L W +P + F +++ +G F + I
Sbjct: 18 PDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKI 77
Query: 613 GDLKPHRNYTFTVI 626
L P F +
Sbjct: 78 TKLSPAMGCKFRLS 91
Score = 36.6 bits (85), Expect = 0.010
Identities = 15/60 (25%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
Query: 138 DNGSKISYVEIETLNGDSNQMF-----VDKTEYVLESLLPGRKYSINVQAVSN-GMESPS 191
DNGSKI +E G N F + ++ + L P + A ++ G S
Sbjct: 43 DNGSKIQNFVLEWDEGKGNGEFCQCYMGSQKQFKITKLSPAMGCKFRLSARNDYGTSGFS 102
Score = 28.1 bits (63), Expect = 6.1
Identities = 12/73 (16%), Positives = 28/73 (38%), Gaps = 13/73 (17%)
Query: 380 VDASNVTLEFPRPE---GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILID 436
+++TL++ P +I+ +++ W E F + K I
Sbjct: 29 RTKNSLTLQWKAPSDNGSKIQNFVLEWD----EGKGNGEFCQCYM----GSQKQFKI--T 78
Query: 437 QLTPGVKYQFTIR 449
+L+P + +F +
Sbjct: 79 KLSPAMGCKFRLS 91
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 52.3 bits (124), Expect = 7e-07
Identities = 49/315 (15%), Positives = 92/315 (29%), Gaps = 41/315 (13%)
Query: 169 SLLPGRKYSINVQAVSNGMESPSFPIIEDLRPIEFGLNISWKSDVNSRQDN--------F 220
S P R + P P + + ++W + S Q + F
Sbjct: 88 SFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTDQDHFLLTWSVALGSPQSHWLSPGDLEF 147
Query: 221 EVIYNRNDTITEDPITVVTTDSK--LLLENLYPGAGYSIQVFAISHGLRSEPHD------ 272
EV+Y R ED +++ S+ L E+L P + Y +V
Sbjct: 148 EVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSKWSP 207
Query: 273 ----YFQAVYPKPPTNLTLEKTSSNAVLVKWKEP-VGSIFTEYSIRYRTEEDKTWVRLPN 327
Q P NL + + W+ + + + Y+ D L
Sbjct: 208 EVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKPSPDAGSAVLLR 267
Query: 328 VGT---SLEAEVTDMVPGEKCMIQVNSVS----YSV-----ESAHPLQINHTISPNPATY 375
L + + C I V + Y V + ++ + I P +
Sbjct: 268 EEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSL 327
Query: 376 -VAALVDASNVTLEFPRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHIL 434
V D+ ++ E + + + AT + T+ + N +
Sbjct: 328 QVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHS-------MA 380
Query: 435 IDQLTPGVKYQFTIR 449
+ L P +Y +R
Sbjct: 381 LPALEPSTRYWARVR 395
Score = 45.8 bits (107), Expect = 7e-05
Identities = 38/270 (14%), Positives = 79/270 (29%), Gaps = 46/270 (17%)
Query: 393 EGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTV- 451
G +E+ +V R + L + + + L P Y +RT
Sbjct: 142 PGDLEFEVVYKRLQDSWEDAAILLSNT---------SQATLGPEHLMPSSTYVARVRTRL 192
Query: 452 ----SYNLESGVTSLSARTMPLIESEVLVVNNQQSTDSVTL--------RYTPQNSNHFD 499
+ S E N + D + + + +
Sbjct: 193 APGSRLSGRPSKWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGL 252
Query: 500 FYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVW------------TVADGVL 547
FY+ + ++ + + + + ++ + +V
Sbjct: 253 FYKPSPDAGSAVLLRE--EECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRA 310
Query: 548 STPIQRHDRLYPEPITRINATEITDTSVSLTWDSPRGEYNA----FEVQY----LNTEGF 599
I+ + P + + T+ D S SL W++ + Y FE+QY +
Sbjct: 311 EKHIKSSVNIQMAPPS-LQVTKDGD-SYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDS 368
Query: 600 LIQNLTLHTSIVIGDLKPHRNYTFTVIVRS 629
+ L S+ + L+P Y V VR+
Sbjct: 369 KTETLQNAHSMALPALEPSTRYWARVRVRT 398
Score = 43.4 bits (101), Expect = 3e-04
Identities = 38/315 (12%), Positives = 87/315 (27%), Gaps = 72/315 (22%)
Query: 79 EPLPVLDLTAVMDDKTGDLFISWKPDNASYQDMYKISIKSILLEEEHQKQFLMGFLGDCD 138
+P DL D ++W S Q + L D
Sbjct: 108 QPPEPRDLQISTDQ--DHFLLTWSVALGSPQSHW---------------------LSPGD 144
Query: 139 NGSKISYVEIETLNGDSNQMFVDKTEYVL--ESLLPGRKYSINVQAV----SNGMESPSF 192
++ Y ++ D+ + + ++ L E L+P Y V+ S PS
Sbjct: 145 LEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPSK 204
Query: 193 PIIEDLRPIEFG-----------------LNISWKSDVNSRQDNFEVIYNR--------- 226
E + G L+ SW+ ++ +
Sbjct: 205 WSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKPSPDAGSAV 264
Query: 227 -------NDTITEDPITVVTTDS-KLLLENLYPGAGYSIQVFAISHGLRSEPHDYFQAVY 278
+ + E ++ T ++ + + Y + V + +
Sbjct: 265 LLREEECSPVLREGLGSLHTRHHCQIPVPDPATHGQYIVSVQPRRAEKHIKSSVN---IQ 321
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEP---VGSIFTEYSIRYRTEEDKTW-VRLPNVGTSLEA 334
PP+ + ++ ++W+ I + I+YR + + + +
Sbjct: 322 MAPPSLQVTK--DGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHSM 379
Query: 335 EVTDMVPGEKCMIQV 349
+ + P + +V
Sbjct: 380 ALPALEPSTRYWARV 394
Score = 36.9 bits (84), Expect = 0.036
Identities = 15/113 (13%), Positives = 32/113 (28%), Gaps = 10/113 (8%)
Query: 167 LESLLPGRKYSINVQAVSNGMESPSFPIIE------DLRPIEFGLNISWK---SDVNSRQ 217
+ +Y ++VQ S I+ + ++ W+
Sbjct: 292 VPDPATHGQYIVSVQPRRAEKHIKSSVNIQMAPPSLQVTKDGDSYSLRWETMKMRYEHID 351
Query: 218 DNFEVIYNRN-DTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAISHGLRSE 269
FE+ Y ++ T + + + L L P Y +V +
Sbjct: 352 HTFEIQYRKDTATWKDSKTETLQNAHSMALPALEPSTRYWARVRVRTSRTGYN 404
Score = 32.3 bits (72), Expect = 0.98
Identities = 34/253 (13%), Positives = 55/253 (21%), Gaps = 32/253 (12%)
Query: 481 QSTDSVTLRYTPQNSNHFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVW 540
Q +VTL N + + LS+ R+ +
Sbjct: 30 QRLVNVTLIRRV-NEDLLEPVSCDLSDDMPWSACPHPRCVPRRCVIPCQSFVVTDVDYFS 88
Query: 541 TVADGVLSTPIQRHDRLYPEPITRINAT-EITDTSVSLTWDSPRGEYNA---------FE 590
D L T + + +P + LTW G + FE
Sbjct: 89 FQPDRPLGTRLTVTLTQHVQPPEPRDLQISTDQDHFLLTWSVALGSPQSHWLSPGDLEFE 148
Query: 591 VQYLNTEGFLIQNLTLHT-----SIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAI 645
V Y + L + ++ L P Y V R S
Sbjct: 149 VVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSR----------- 197
Query: 646 FQTHESLPGKMDRTIVDTWHFVRFFQAEKFHPIDVQPGDITFEWSLPGSEQNGVIRKFTI 705
S W +A+ + G S ++ F +
Sbjct: 198 LSGRPSKWSPE-----VCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGL 252
Query: 706 SYAQEAACNHNQR 718
Y
Sbjct: 253 FYKPSPDAGSAVL 265
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 47.7 bits (114), Expect = 9e-07
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 9/86 (10%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEPVGS----IFTEYSIRYRTEEDKTWVRLPNVGTSLEAEV 336
P NL + +++ + W PV + Y++ +R + ++ N+ T +
Sbjct: 11 FPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQ--NITTDTRFTL 68
Query: 337 TDMVPGEKCMIQV---NSVSYSVESA 359
T + P I+V S S
Sbjct: 69 TGLKPDTTYDIKVRAWTSKGSGPLSP 94
Score = 42.7 bits (101), Expect = 5e-05
Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 6/67 (8%)
Query: 565 INATEITDTSVSLTWDSP-----RGEYNAFEVQYLNTEG-FLIQNLTLHTSIVIGDLKPH 618
++ T +T ++ L WD P G ++ V + + +QN+T T + LKP
Sbjct: 15 LHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITTDTRFTLTGLKPD 74
Query: 619 RNYTFTV 625
Y V
Sbjct: 75 TTYDIKV 81
Score = 36.5 bits (85), Expect = 0.006
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 9/73 (12%)
Query: 205 LNISWK----SDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVF 260
++W ++ N R ++ V++ ++ + + +TTD++ L L P Y I+V
Sbjct: 25 TELAWDPPVLAERNGRIISYTVVFRDINS--QQELQNITTDTRFTLTGLKPDTTYDIKVR 82
Query: 261 AIS---HGLRSEP 270
A + G S
Sbjct: 83 AWTSKGSGPLSPS 95
Score = 31.5 bits (72), Expect = 0.32
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 142 KISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAV-SNGMESPSFPI 194
+ + +I + Q T + L L P Y I V+A S G S I
Sbjct: 45 TVVFRDINSQQ--ELQNITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSI 96
Score = 31.5 bits (72), Expect = 0.34
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 17/79 (21%)
Query: 394 GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIRTVSY 453
GRI Y V +R I + +N+T D + L P Y +R ++
Sbjct: 39 GRIISYTVVFRDINSQQE-----LQNITTDT-------RFTLTGLKPDTTYDIKVR--AW 84
Query: 454 NLE-SGVTS--LSARTMPL 469
+ SG S + +RTMP+
Sbjct: 85 TSKGSGPLSPSIQSRTMPV 103
Score = 30.0 bits (68), Expect = 1.4
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 3/42 (7%)
Query: 514 EKAANDTDRKVTFNNLTPGKLYNFTV--WTVA-DGVLSTPIQ 552
E TD + T L P Y+ V WT G LS IQ
Sbjct: 56 ELQNITTDTRFTLTGLKPDTTYDIKVRAWTSKGSGPLSPSIQ 97
Score = 28.4 bits (64), Expect = 4.1
Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 42/121 (34%)
Query: 803 APPRPSSQVVPTEVCRTSTTIQIRFRKNYFSEKNGAIIYYTVIVAEDDSKNSSGLEMPSW 862
P + T + T++T ++ + +E+NG II YTV+ + +S+
Sbjct: 7 GPSGFPQNLHVTGL--TTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQ--------- 55
Query: 863 RDVQAYSVWPPYQVLEPFQFFKNMSVEDFTIGEESCEGKTGYCNGPLKSGSTYKVKIRAF 922
+ + FT+ TG LK +TY +K+RA+
Sbjct: 56 ------------------ELQNITTDTRFTL--------TG-----LKPDTTYDIKVRAW 84
Query: 923 T 923
T
Sbjct: 85 T 85
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 50.9 bits (122), Expect = 1e-06
Identities = 15/67 (22%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAE 335
P PP + + S ++V + W EP GS T Y + + W+R+
Sbjct: 199 PDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRV-GQARETRYT 257
Query: 336 VTDMVPG 342
V ++
Sbjct: 258 VINLFGK 264
Score = 44.7 bits (106), Expect = 1e-04
Identities = 17/74 (22%), Positives = 32/74 (43%), Gaps = 6/74 (8%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNA----FEVQY--LNTEGFLIQNLTLHTSIVI 612
P+P + ++++ SV+LTW P + + + V+ E +L T +
Sbjct: 199 PDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYTV 258
Query: 613 GDLKPHRNYTFTVI 626
+L +Y F VI
Sbjct: 259 INLFGKTSYQFRVI 272
Score = 31.3 bits (71), Expect = 1.9
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 138 DNGSKISY--VEIETLNGDS--NQMFVDKTEYVLESLLPGRKYSINVQAV-SNGMESPSF 192
D GSKI+ VE + +T Y + +L Y V A G+ PS
Sbjct: 225 DGGSKITNYIVEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAENKFGLSKPSE 284
Query: 193 P 193
P
Sbjct: 285 P 285
Score = 29.7 bits (67), Expect = 5.7
Identities = 17/87 (19%), Positives = 30/87 (34%), Gaps = 8/87 (9%)
Query: 188 ESPSFPIIEDLRPIEFGLNISWK---SDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKL 244
+ P + D+ +N++W SD S+ N+ V +
Sbjct: 200 DPPRGVKVSDVS--RDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETR-Y 256
Query: 245 LLENLYPGAGYSIQVFAI-SHGLRSEP 270
+ NL+ Y +V A G S+P
Sbjct: 257 TVINLFGKTSYQFRVIAENKFG-LSKP 282
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 50.7 bits (120), Expect = 1e-06
Identities = 29/276 (10%), Positives = 69/276 (25%), Gaps = 31/276 (11%)
Query: 207 ISWKSDVNSRQD-NFEVIY----NRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFA 261
+ W S + F Y N + +T L +++ A
Sbjct: 21 LRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRA 80
Query: 262 ISHGLRSE-PHDYFQAVY--PKPPTNLTLEKTSSNAVLVKWKEP--------VGSIFTEY 310
S D F P + LE +++ + + Y
Sbjct: 81 EKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKA-IVIHISPGTKDSVMWALDGLSFTY 139
Query: 311 SIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQVNSVS--------YSVESAHPL 362
S+ R+ N+ + ++ + P ++V + YS
Sbjct: 140 SLVIWKNSSGVEERIENIYSRH--KIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKT 197
Query: 363 QINHTISPNPATYVAALVDASNVTLEFPRPEGRIE-YYLVTWRGIGPEATSTELFTKNVT 421
+ + + P V+ + ++ + +L + P +
Sbjct: 198 TVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDC 257
Query: 422 NDPEDKDKHVHILIDQLTPGVKYQFTIRTVSYNLES 457
+ + + + Y ++ N S
Sbjct: 258 ENVKTTQC---VFPQNVFQKGIYLLRVQASDGNNTS 290
Score = 50.3 bits (119), Expect = 2e-06
Identities = 31/239 (12%), Positives = 61/239 (25%), Gaps = 30/239 (12%)
Query: 438 LTPGVKYQFTIRTVSYNLESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTP----- 492
L + + IR N S S + V+ + ++ + +P
Sbjct: 68 LNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDS 127
Query: 493 ---QNSNHFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVAD----- 544
Y + + +E+ + + L+P Y V
Sbjct: 128 VMWALDGLSFTYSLVIWKNS-SGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKI 186
Query: 545 GVLSTPIQ-RHDRLYPEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEGFLI-- 601
GV S + P + + + L WD F+VQ+L+
Sbjct: 187 GVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTY-ANMTFQVQWLHAFLKRNPG 245
Query: 602 ------------QNLTLHTSIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQT 648
+N+ + ++ Y V G +S + Q
Sbjct: 246 NHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQA 304
Score = 46.1 bits (108), Expect = 4e-05
Identities = 40/283 (14%), Positives = 87/283 (30%), Gaps = 31/283 (10%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEPVGSIF-TEYSIRYRTEEDKTWVRLPNVG--TSLEAEVT 337
P + ++ N +L +W S+ +S Y+ W++L TS + +
Sbjct: 6 SPQKVEVDIIDDNFIL-RWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNFS 64
Query: 338 D--MVPGEKCMIQVNSVSYSVESAHPLQ----INHTISPNPATYVAALVDASNVTLEFPR 391
+ E+ +++ + + S + + P ++ A A + +
Sbjct: 65 SLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGT 124
Query: 392 PEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPED-KDKHVHILIDQLTPGVKYQFTIRT 450
+ V W G T + + KN + E ++ + I +L+P Y ++
Sbjct: 125 KDS------VMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKA 178
Query: 451 VSYNL--------ESGVTSLSARTMPLIESEVLVVNNQQSTDSVTLRYTPQNSNHFDFYR 502
+ + +P E+ + V NQ Y +
Sbjct: 179 ALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHA 238
Query: 503 FTLSEPD------IPVIEKAANDTDRKVTFNNLTPGKLYNFTV 539
F P + + T + V N+ +Y V
Sbjct: 239 FLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRV 281
Score = 34.9 bits (79), Expect = 0.15
Identities = 28/225 (12%), Positives = 67/225 (29%), Gaps = 29/225 (12%)
Query: 492 PQNSNHFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLT--PGKLYNFTVWTVADGVLST 549
+ F F + + N T K F++L + + + S+
Sbjct: 29 SVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAEKENT-SS 87
Query: 550 PIQRHDRLYPEPITRINATEIT----DTSVSLTWDSP---------RGEYNAFEVQYL-N 595
+ D P +I E+ D ++ + G + + N
Sbjct: 88 WYE-VDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSLVIWKN 146
Query: 596 TEGFLIQNLTLHTSIVIGDLKPHRNYTFTV--IVRSGTESSVLRRSLPVSAIFQTHESLP 653
+ G + +++ I L P Y V + + + V + + P
Sbjct: 147 SSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVENELPPP 206
Query: 654 GKMDRTIVDTWHFVRFFQAEKFHPIDVQ---------PGDITFEW 689
++ ++ + + +++ VQ PG+ ++W
Sbjct: 207 ENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKW 251
Score = 30.3 bits (67), Expect = 4.4
Identities = 23/164 (14%), Positives = 47/164 (28%), Gaps = 32/164 (19%)
Query: 137 CDNGSKISYVEIETLNGDSNQMFVD--KTEYVLESLLPGRKYSINVQAVS-----NGMES 189
+G +Y + N + ++ + + + L P Y + V+A G+ S
Sbjct: 131 ALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYS 190
Query: 190 P------------SFPIIEDLRPIEFGLNISWKSDVNSRQDNFEVIY-----------NR 226
P P ++ + W D F+V + +
Sbjct: 191 PVHCIKTTVENELPPPENIEVSVQNQNYVLKW--DYTYANMTFQVQWLHAFLKRNPGNHL 248
Query: 227 NDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAISHGLRSEP 270
V T + +N++ Y ++V A S
Sbjct: 249 YKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGNNTSFW 292
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 49.8 bits (118), Expect = 1e-06
Identities = 20/101 (19%), Positives = 37/101 (36%), Gaps = 6/101 (5%)
Query: 255 YSIQVFAISHGLRSEPHDYFQAVYPKPPTNLTLE-KTSSNAVLVKWKEPV----GSIFTE 309
+I V L + D V P+ P +L++ + +N +V +
Sbjct: 89 SNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLM 148
Query: 310 YSIRYRTEEDKT-WVRLPNVGTSLEAEVTDMVPGEKCMIQV 349
+ + YR E+D+ W + T L + P I+V
Sbjct: 149 HDVAYRQEKDENKWTHVNLSSTKLTLLQRKLQPAAMYEIKV 189
Score = 34.0 bits (77), Expect = 0.20
Identities = 20/159 (12%), Positives = 41/159 (25%), Gaps = 22/159 (13%)
Query: 517 ANDTDRKVTFNNLTPGKLYNFTVWTVADGVLSTP--IQRHDRLYPEPITRINATEITDT- 573
+ + T I + PE ++
Sbjct: 69 FRKLQEIYFIETKKFLLIGKSNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYREGAN 128
Query: 574 SVSLTWDSPRGEYNA-----FEVQYLNTEG----FLIQNLTLHTSIVIGDLKPHRNYTFT 624
+T+++ + +V Y + + + +++ L+P Y
Sbjct: 129 DFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTKLTLLQRKLQPAAMYEIK 188
Query: 625 VIVRSGTESSVLRR----SLPVSAIFQTHESLP--GKMD 657
VRS + S F+T E G+MD
Sbjct: 189 --VRSIPDHYFKGFWSEWSPSYY--FRTPEINNSSGEMD 223
Score = 33.6 bits (76), Expect = 0.25
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 12/76 (15%)
Query: 205 LNISWKSDVNSRQDNFEVIY-----NRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQV 259
+++ + ++ +++ D + + +T LL L P A Y I+V
Sbjct: 130 FVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTKLTLLQRKLQPAAMYEIKV 189
Query: 260 FAISHGLRSEPHDYFQ 275
RS P YF+
Sbjct: 190 -------RSIPDHYFK 198
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 47.7 bits (114), Expect = 1e-06
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 8/86 (9%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEPVGS----IFTEYSIRYRTEEDKTWVRLPNVGTSLEAEV 336
PP N++LE +S ++ V W P T Y IR+R + + +L
Sbjct: 31 PPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHR-KTTRRGEMETLEPNNLWYLF 89
Query: 337 TDMVPGEKCMIQV---NSVSYSVESA 359
T + G + QV S
Sbjct: 90 TGLEKGSQYSFQVSAMTVNGTGPPSN 115
Score = 38.8 bits (91), Expect = 0.002
Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 21/101 (20%)
Query: 563 TRINATEITDTSVSLTWDSP-----RGEYNAFEVQYLNTEGFLIQNLTLH---TSIVIGD 614
++ + S+ ++W P G +++++ T + TL +
Sbjct: 33 QNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTR-RGEMETLEPNNLWYLFTG 91
Query: 615 LKPHRNYTFTVIVR----SGTESSVLRRSLPVSAIFQTHES 651
L+ Y+F V +G S+ +T E+
Sbjct: 92 LEKGSQYSFQVSAMTVNGTGPPSNWY--------TAETPEN 124
Score = 37.3 bits (87), Expect = 0.006
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 205 LNISWK----SDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVF 260
+ +SW N +++ + + + T+ + L L G+ YS QV
Sbjct: 45 IKVSWLPPPSGTQNGFITGYKIRHRKTTR-RGEMETLEPNNLWYLFTGLEKGSQYSFQVS 103
Query: 261 AIS---HGLRSEP 270
A++ G S
Sbjct: 104 AMTVNGTGPPSNW 116
Score = 30.4 bits (69), Expect = 1.4
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 140 GSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAV-SNGMESPSFPII 195
G KI + + G+ + + Y+ L G +YS V A+ NG PS
Sbjct: 63 GYKIRHRKTTR-RGEMETLEPNNLWYLFTGLEKGSQYSFQVSAMTVNGTGPPSNWYT 118
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 47.1 bits (112), Expect = 1e-06
Identities = 21/102 (20%), Positives = 34/102 (33%), Gaps = 13/102 (12%)
Query: 279 PKPPTNLTL--EKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTWVRLPNVGTSLE 333
P P NL L + + ++ W P+ G I EY + Y K W
Sbjct: 8 PDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLI-REYIVEYSRSGSKMWASQRAASNF-- 64
Query: 334 AEVTDMVPGEKCMIQV---NSVSYSVESAHPLQINHTISPNP 372
E+ +++ ++V S S I TI +
Sbjct: 65 TEIKNLLVNTLYTVRVAAVTSRGIGNWSD-SKSI-TTIKGSG 104
Score = 38.2 bits (89), Expect = 0.002
Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 4/69 (5%)
Query: 561 PITRINATEITDTSVSLTWDSPR---GEYNAFEVQYLNTEGFLIQNLTL-HTSIVIGDLK 616
+++ + + W P G + V+Y + + + I +L
Sbjct: 12 RNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQRAASNFTEIKNLL 71
Query: 617 PHRNYTFTV 625
+ YT V
Sbjct: 72 VNTLYTVRV 80
Score = 32.8 bits (75), Expect = 0.15
Identities = 12/85 (14%), Positives = 32/85 (37%), Gaps = 8/85 (9%)
Query: 205 LNISWK--SDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAI 262
+ W + + V Y+R+ + + + + ++NL Y+++V A+
Sbjct: 26 IVGHWAPPIHTHGLIREYIVEYSRSGS--KMWASQRAASNFTEIKNLLVNTLYTVRVAAV 83
Query: 263 S---HGLRSEPHDYFQAVYPKPPTN 284
+ G S+ + P++
Sbjct: 84 TSRGIGNWSDSK-SITTIKGSGPSS 107
Score = 29.7 bits (67), Expect = 1.5
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 136 DCDNGSKISY-VEIETLNGDSNQMF-VDKTEYVLESLLPGRKYSINVQAV 183
+G Y VE +++LL Y++ V AV
Sbjct: 34 IHTHGLIREYIVEYSRSGSKMWASQRAASNFTEIKNLLVNTLYTVRVAAV 83
Score = 27.8 bits (62), Expect = 7.2
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 15/86 (17%)
Query: 369 SPNPATYVAALVDASNVTLEFPRPE---GRIEYYLVTWRGIGPEATSTELFTKNVTNDPE 425
+P + + P G I Y+V + G + +++ N T
Sbjct: 10 APRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEYSRSGSKMWASQRAASNFT---- 65
Query: 426 DKDKHVHILIDQLTPGVKYQFTIRTV 451
I L Y + V
Sbjct: 66 --------EIKNLLVNTLYTVRVAAV 83
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 47.4 bits (113), Expect = 2e-06
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTWVRLPNV-GTSLEA 334
P P +L+ + ++ V W+EP G + T Y I + + +LE
Sbjct: 18 PGPVGHLSFSEILDTSLKVSWQEPGEKNGIL-TGYRISWEEYNRTNTRVTHYLPNVTLEY 76
Query: 335 EVTDMVPGEKCMIQV 349
VT + I+V
Sbjct: 77 RVTGLTALTTYTIEV 91
Score = 44.7 bits (106), Expect = 1e-05
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 7/74 (9%)
Query: 559 PEPITRINATEITDTSVSLTWDSPR---GEYNAFEVQY----LNTEGFLIQNLTLHTSIV 611
P P+ ++ +EI DTS+ ++W P G + + + +
Sbjct: 18 PGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLPNVTLEYR 77
Query: 612 IGDLKPHRNYTFTV 625
+ L YT V
Sbjct: 78 VTGLTALTTYTIEV 91
Score = 34.3 bits (79), Expect = 0.057
Identities = 16/86 (18%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 205 LNISWK--SDVNSRQDNFEVIYNR-NDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFA 261
L +SW+ + N + + + N T T + + + L Y+I+V A
Sbjct: 34 LKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAA 93
Query: 262 ISH---GLRSEPHDYFQAVYPKPPTN 284
++ G S P P++
Sbjct: 94 MTSKGQGQVSASTISSGVP-PSGPSS 118
Score = 32.4 bits (74), Expect = 0.22
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 142 KISYVEIETLNGDSNQMF-VDKTEYVLESLLPGRKYSINVQAV-SNGMESPSFPII 195
+IS+ E N EY + L Y+I V A+ S G S I
Sbjct: 52 RISWEEYNRTNTRVTHYLPNVTLEYRVTGLTALTTYTIEVAAMTSKGQGQVSASTI 107
Score = 32.4 bits (74), Expect = 0.24
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 19/70 (27%)
Query: 638 RSLPVSAIFQTHESLPGKMDRTIVDTWHFVRFFQAEKFHPIDVQPGDITFEWSLPGSEQN 697
S P +THE +PG V ++ + W P E+N
Sbjct: 5 SSGPQL--VRTHEDVPGP-----------VGHLSFS-----EILDTSLKVSWQEP-GEKN 45
Query: 698 GVIRKFTISY 707
G++ + IS+
Sbjct: 46 GILTGYRISW 55
Score = 32.0 bits (73), Expect = 0.32
Identities = 11/81 (13%), Positives = 24/81 (29%), Gaps = 12/81 (14%)
Query: 372 PATYVAALVDASNVTLEFPRPE---GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKD 428
+ + +++ + + P G + Y ++W T + NVT
Sbjct: 21 VGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLPNVTL------ 74
Query: 429 KHVHILIDQLTPGVKYQFTIR 449
+ LT Y +
Sbjct: 75 ---EYRVTGLTALTTYTIEVA 92
Score = 30.9 bits (70), Expect = 0.90
Identities = 13/82 (15%), Positives = 21/82 (25%), Gaps = 9/82 (10%)
Query: 482 STDSVTLRYT-PQNSN----HFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYN 536
S+ + + P N + + + V N T + LT Y
Sbjct: 30 LDTSLKVSWQEPGEKNGILTGYRISWEEYNRTNTRVTHYLPNVT-LEYRVTGLTALTTYT 88
Query: 537 FTV--WTVA-DGVLSTPIQRHD 555
V T G +S
Sbjct: 89 IEVAAMTSKGQGQVSASTISSG 110
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 46.9 bits (112), Expect = 2e-06
Identities = 15/75 (20%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 279 PKPPTNLTLE-KTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEA 334
P P L+ + + + ++W P+ GS + YS+ E + G+ +E
Sbjct: 9 PGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREV-YQGSEVEC 67
Query: 335 EVTDMVPGEKCMIQV 349
V+ ++PG+ ++
Sbjct: 68 TVSSLLPGKTYSFRL 82
Score = 36.5 bits (85), Expect = 0.006
Identities = 8/64 (12%), Positives = 19/64 (29%), Gaps = 6/64 (9%)
Query: 568 TEITDTSVSLTWDSPRGEYNA----FEVQY--LNTEGFLIQNLTLHTSIVIGDLKPHRNY 621
+ L W P + + + V+ + + + L P + Y
Sbjct: 19 GRPKAKEIQLRWGPPLVDGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTY 78
Query: 622 TFTV 625
+F +
Sbjct: 79 SFRL 82
Score = 32.3 bits (74), Expect = 0.24
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Query: 138 DNGSKISY--VEIETLNGDSNQMFVD--KTEYVLESLLPGRKYSINVQAV 183
D GS IS VE+ + D + + E + SLLPG+ YS ++A
Sbjct: 36 DGGSPISCYSVEMSPIEKDEPREVYQGSEVECTVSSLLPGKTYSFRLRAA 85
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 46.9 bits (112), Expect = 2e-06
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTWVRL-PNVGTSLEA 334
PP + + V +KW +P G T Y + R + W++ + E
Sbjct: 11 IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 70
Query: 335 EVTDMVPG 342
V+ +
Sbjct: 71 TVSGLTED 78
Score = 37.7 bits (88), Expect = 0.003
Identities = 14/76 (18%), Positives = 23/76 (30%), Gaps = 8/76 (10%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNA----FEVQYLNTEG----FLIQNLTLHTSI 610
+P + IT +V+L W P + V+ + + L
Sbjct: 11 IDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITSYIVEKRDLPNGRWLKANFSNILENEF 70
Query: 611 VIGDLKPHRNYTFTVI 626
+ L Y F VI
Sbjct: 71 TVSGLTEDAAYEFRVI 86
Score = 29.6 bits (67), Expect = 2.3
Identities = 15/60 (25%), Positives = 21/60 (35%), Gaps = 7/60 (11%)
Query: 138 DNGSKISY--VEIETLNGDS----NQMFVDKTEYVLESLLPGRKYSINVQAV-SNGMESP 190
G KI+ VE L N + + E+ + L Y V A + G SP
Sbjct: 37 TGGFKITSYIVEKRDLPNGRWLKANFSNILENEFTVSGLTEDAAYEFRVIAKNAAGAISP 96
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 49.0 bits (116), Expect = 2e-06
Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 8/94 (8%)
Query: 263 SHGLRSEPHDYFQAVYPKPPTNLTLEKTSSNAVLVKWKEPVGSIF----TEYSIRYRTEE 318
+ + F+ + P +L + ++ + W+ S + E+ R +
Sbjct: 90 WRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSPG 149
Query: 319 DKTWVRLPNV---GTSLEAEVTDMVPGEKCMIQV 349
TW P + + + P + QV
Sbjct: 150 H-TWEEAPLLTLKQKQEWICLETLTPDTQYEFQV 182
Score = 40.9 bits (95), Expect = 0.001
Identities = 23/145 (15%), Positives = 43/145 (29%), Gaps = 22/145 (15%)
Query: 529 LTPGKLYNFTVWTVADG----VLSTPIQRHDRLYPEPITRINATEITDTSVSLTWDSPRG 584
LT + V + + + L + + +++W+ +
Sbjct: 72 LTTVDIVTLRVLCREGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQA 131
Query: 585 EYN-----AFEVQYLN-----TEGFLIQNLTLHTSIVIGDLKPHRNYTFTVIVRSGTESS 634
+ FE + L+ E L+ I + L P Y F VR
Sbjct: 132 SHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQ--VRVKPLQG 189
Query: 635 VLRR----SLPVSAIFQTHESLPGK 655
S P++ F+T + GK
Sbjct: 190 EFTTWSPWSQPLA--FRTKPAALGK 212
Score = 36.3 bits (83), Expect = 0.031
Identities = 24/119 (20%), Positives = 34/119 (28%), Gaps = 21/119 (17%)
Query: 168 ESLLPGRKYSINVQAV----SNGMESPSFPIIEDLRPI-----------EFGLNISWKSD 212
+ L ++ V M F E+LR + NISW+
Sbjct: 70 QKLTTVDIVTLRVLCREGVRWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEIS 129
Query: 213 VNS----RQDNFEVIYNRNDTITED--PITVVTTDSKLLLENLYPGAGYSIQVFAISHG 265
S R FE E+ +T+ + LE L P Y QV
Sbjct: 130 QASHYFERHLEFEARTLSPGHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQ 188
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 48.9 bits (116), Expect = 2e-06
Identities = 34/203 (16%), Positives = 63/203 (31%), Gaps = 14/203 (6%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPVGSIF-TEYSIRYRTEEDKTWVRLPNV--GTSLEAE 335
++ + ++ +L W T YSI Y+T ++ WV T
Sbjct: 5 SDLLQHVKFQSSNFENIL-TWDSGPEGTPDTVYSIEYKTYGERDWVAKKGCQRITRKSCN 63
Query: 336 VTD--MVPGEKCMIQV-----NSVSYSVESAHPLQINHTISPNPATYVAALVDASNVTLE 388
+T E +V S + + + HT P + V + + +
Sbjct: 64 LTVETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPPDVTCISKVRSIQMIVH 123
Query: 389 FPR-PEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFT 447
P + + +T I + N T K LTP ++ T
Sbjct: 124 PTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQREYEFFGLTPDTEFLGT 183
Query: 448 IRTV--SYNLESGVTSLSARTMP 468
I + ++ ES +T+P
Sbjct: 184 IMILVPTWAKESAPYMCRVKTLP 206
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 47.3 bits (112), Expect = 3e-06
Identities = 24/110 (21%), Positives = 36/110 (32%), Gaps = 19/110 (17%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNA------------FEVQYLNTEG---FLIQN 603
I + A++I +V LTW P N +EV +T +
Sbjct: 18 LSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVY 77
Query: 604 LTLHTSIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLP 653
+ T+I + DLKP +Y V + S F T P
Sbjct: 78 VGEETNITLNDLKPAMDYHAKVQAEYNSIKGTP--SEAEI--FTTLSCEP 123
Score = 32.3 bits (73), Expect = 0.40
Identities = 11/61 (18%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 135 GDCDNGSKISYVEIETLNGDSNQMFV-----DKTEYVLESLLPGRKYSINVQAVSNGMES 189
D + ++ E+ + + + ++T L L P Y VQA N ++
Sbjct: 49 TDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKG 108
Query: 190 P 190
Sbjct: 109 T 109
Score = 28.8 bits (64), Expect = 4.8
Identities = 19/126 (15%), Positives = 39/126 (30%), Gaps = 13/126 (10%)
Query: 180 VQAVSNGMESPSFPIIEDL---------RPIEFGLNISWKSDVNSRQDNFEVIYNRNDTI 230
+A + + P+ D+ P +N +EV+ +
Sbjct: 11 TKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKD 70
Query: 231 TEDPITVVTTDSKLLLENLYPGAGYSIQVFAISHGLRSEP----HDYFQAVYPKPPTNLT 286
+ V ++ + L +L P Y +V A + ++ P + P P
Sbjct: 71 GKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEPDIPNPPR 130
Query: 287 LEKTSS 292
+ SS
Sbjct: 131 ISGPSS 136
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 46.6 bits (111), Expect = 3e-06
Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 5/69 (7%)
Query: 279 PKPPTNLTLEKT--SSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKTWVRLPNV-GTSLE 333
P P + + A+ + W +P S Y + V L +V +
Sbjct: 18 PHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRYILEMSENNAPWTVLLASVDPKATS 77
Query: 334 AEVTDMVPG 342
V +VP
Sbjct: 78 VTVKGLVPA 86
Score = 34.3 bits (79), Expect = 0.058
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 13/73 (17%)
Query: 564 RINATEITDTSVSLTWD------SPRGEYNAFEVQY--LNTEGFLIQNLTLH--TSIVIG 613
+ + +++LTW SP Y ++ N ++ TS+ +
Sbjct: 25 VATLSTVERRAINLTWTKPFDGNSPLIRYI---LEMSENNAPWTVLLASVDPKATSVTVK 81
Query: 614 DLKPHRNYTFTVI 626
L P R+Y F +
Sbjct: 82 GLVPARSYQFRLC 94
Score = 33.9 bits (78), Expect = 0.070
Identities = 13/63 (20%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 138 DNGSKISY--VEIETLNGD----SNQMFVDKTEYVLESLLPGRKYSINVQAVSN-GMESP 190
D S + +E+ N + T ++ L+P R Y + AV++ G
Sbjct: 45 DGNSPLIRYILEMSENNAPWTVLLASVDPKATSVTVKGLVPARSYQFRLCAVNDVGKGQF 104
Query: 191 SFP 193
S
Sbjct: 105 SKD 107
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 45.9 bits (109), Expect = 3e-06
Identities = 12/71 (16%), Positives = 26/71 (36%), Gaps = 6/71 (8%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYN----AFEVQYLNTEGFLIQNLTLHTSIVIGD 614
++ + + + LTW R ++E+ LN + + L +++
Sbjct: 11 LSGLS-LKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLN-QDEEWHQMVLEPRVLLTK 68
Query: 615 LKPHRNYTFTV 625
L+P Y V
Sbjct: 69 LQPDTTYIVRV 79
Score = 29.8 bits (67), Expect = 1.6
Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
Query: 182 AVSNGMESPSFPIIEDLRPIEFGLNISWKSDVNSRQDN---FEVIYNRNDTITEDPITVV 238
+ S+G ES S ++ ++ L ++W +E+ D + +
Sbjct: 3 SGSSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQD----EEWHQM 58
Query: 239 TTDSKLLLENLYPGAGYSIQVFAIS---HGLRSEPH 271
+ ++LL L P Y ++V ++ G S H
Sbjct: 59 VLEPRVLLTKLQPDTTYIVRVRTLTPLGPGPFSPDH 94
Score = 29.8 bits (67), Expect = 1.6
Identities = 13/87 (14%), Positives = 24/87 (27%), Gaps = 9/87 (10%)
Query: 472 SEVLVVNNQQSTDSVTLRYTPQNSNHFDF---YRFTLSEPDIPVIEKAANDTDRKVTFNN 528
S + + ++ + L + + Y + D E + +V
Sbjct: 12 SGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDE---EWHQMVLEPRVLLTK 68
Query: 529 LTPGKLYNFTV--WTVA-DGVLSTPIQ 552
L P Y V T G S +
Sbjct: 69 LQPDTTYIVRVRTLTPLGPGPFSPDHE 95
Score = 29.4 bits (66), Expect = 2.3
Identities = 6/43 (13%), Positives = 16/43 (37%), Gaps = 4/43 (9%)
Query: 142 KISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVS 184
++ + + V + +L L P Y + V+ ++
Sbjct: 45 ELHVLN----QDEEWHQMVLEPRVLLTKLQPDTTYIVRVRTLT 83
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 46.2 bits (110), Expect = 4e-06
Identities = 14/69 (20%), Positives = 27/69 (39%), Gaps = 5/69 (7%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRT-EEDKTWVRLPNV--GTSLE 333
P+ P T+ S +V V W G + + Y+ ++ W+ + + L
Sbjct: 18 PEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLS 77
Query: 334 AEVTDMVPG 342
E+T + G
Sbjct: 78 VEITGLEKG 86
Score = 35.0 bits (81), Expect = 0.027
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 11/78 (14%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNA----FEVQY---LNTEGFLIQNLTL---HT 608
PE R + ++TSV +TW PRG F V+Y +++ +
Sbjct: 18 PEAPDRPTISTASETSVYVTW-IPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRL 76
Query: 609 SIVIGDLKPHRNYTFTVI 626
S+ I L+ +Y F V
Sbjct: 77 SVEITGLEKGISYKFRVR 94
Score = 32.3 bits (74), Expect = 0.28
Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 9/65 (13%)
Query: 138 DNGSKISY--VEIETLNGDSNQMFV------DKTEYVLESLLPGRKYSINVQAV-SNGME 188
+ G I VE + L + + + + L G Y V+A+ G
Sbjct: 43 NGGFPIQSFRVEYKKLKKVGDWILATSAIPPSRLSVEITGLEKGISYKFRVRALNMLGES 102
Query: 189 SPSFP 193
PS P
Sbjct: 103 EPSAP 107
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 46.0 bits (109), Expect = 4e-06
Identities = 18/102 (17%), Positives = 39/102 (38%), Gaps = 11/102 (10%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKTWVRLPNV-GTSLEAE 335
P PP+ + + +S + + + G+ EY ++YR+++ + V G
Sbjct: 9 PSPPS-IHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHII 67
Query: 336 VTDMVPGEKCMIQV---NSVSYSVESAHPLQINHTISPNPAT 374
+ + +Q+ N + YS P ++ P P
Sbjct: 68 LEHLQWTMGYEVQITAANRLGYS----EPTVYEFSMPPKPNI 105
Score = 32.9 bits (75), Expect = 0.16
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 14/78 (17%)
Query: 559 PEPITRINATEITDTSVSLTWD------SPRGEYNAFEVQYLNTEG----FLIQNLTLHT 608
P P I+ + S L+ +P EY V+Y + + +
Sbjct: 9 PSP-PSIHGQPSSGKSFKLSITKQDDGGAPILEYI---VKYRSKDKEDQWLEKKVQGNKD 64
Query: 609 SIVIGDLKPHRNYTFTVI 626
I++ L+ Y +
Sbjct: 65 HIILEHLQWTMGYEVQIT 82
Score = 32.9 bits (75), Expect = 0.16
Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 5/98 (5%)
Query: 190 PSFPIIEDLRPIEFGLNISWK--SDVNSRQDNFEVIYNRNDTITEDP-ITVVTTDSKLLL 246
PS P I +S D + + V Y D + V ++L
Sbjct: 9 PSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIIL 68
Query: 247 ENLYPGAGYSIQVFAI-SHGLRSEPHDYFQAVYPKPPT 283
E+L GY +Q+ A G SEP Y ++ PKP
Sbjct: 69 EHLQWTMGYEVQITAANRLG-YSEPTVYEFSMPPKPNI 105
Score = 31.3 bits (71), Expect = 0.61
Identities = 12/63 (19%), Positives = 22/63 (34%), Gaps = 7/63 (11%)
Query: 138 DNGSKISYVEIETLNGDSNQMF------VDKTEYVLESLLPGRKYSINVQAV-SNGMESP 190
D G+ I ++ + D + +K +LE L Y + + A G P
Sbjct: 33 DGGAPILEYIVKYRSKDKEDQWLEKKVQGNKDHIILEHLQWTMGYEVQITAANRLGYSEP 92
Query: 191 SFP 193
+
Sbjct: 93 TVY 95
Score = 31.0 bits (70), Expect = 0.75
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 12/85 (14%)
Query: 370 PNPATYVAALVDASNVTLEF-PRPEGR--IEYYLVTWRGIGPEATSTELFTKNVTNDPED 426
P+P + + L + +G I Y+V +R E E + +
Sbjct: 9 PSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKD---- 64
Query: 427 KDKHVHILIDQLTPGVKYQFTIRTV 451
HI+++ L + Y+ I
Sbjct: 65 -----HIILEHLQWTMGYEVQITAA 84
Score = 28.7 bits (64), Expect = 4.8
Identities = 11/64 (17%), Positives = 16/64 (25%), Gaps = 8/64 (12%)
Query: 482 STDSVTLRYTPQNSNHFDF------YRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLY 535
S S L T Q+ YR E + N + +L Y
Sbjct: 20 SGKSFKLSITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKD--HIILEHLQWTMGY 77
Query: 536 NFTV 539
+
Sbjct: 78 EVQI 81
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 45.9 bits (109), Expect = 4e-06
Identities = 16/100 (16%), Positives = 34/100 (34%), Gaps = 6/100 (6%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEV 336
P PT + + T+ N L++W P Y ++Y ++ + V
Sbjct: 8 PGRPT-MMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTIDFGKDDQHFTV 66
Query: 337 TDMVPGEKCMIQV---NSVSYSVESAHPLQINHTISPNPA 373
T + G + ++ N E ++ +S +
Sbjct: 67 TGLHKGTTYIFRLAAKNRAGLGEEFEKEIRTPEDLSGPSS 106
Score = 37.8 bits (88), Expect = 0.002
Identities = 10/68 (14%), Positives = 20/68 (29%), Gaps = 6/68 (8%)
Query: 564 RINATEITDTSVSLTWDSPR---GEYNAFEVQY--LNTEGFLIQNLTL-HTSIVIGDLKP 617
+ + + L W P+ GE + +QY + + + L
Sbjct: 12 TMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHK 71
Query: 618 HRNYTFTV 625
Y F +
Sbjct: 72 GTTYIFRL 79
Score = 33.5 bits (77), Expect = 0.089
Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 13/83 (15%)
Query: 370 PNPATYVAALVDASNVTLEFPRPE---GRIEYYLVTWRGIGPEATSTELFTKNVTNDPED 426
P T + + + L++ P+ G + Y + + +T F K+
Sbjct: 8 PGRPTMMISTTAMNTALLQWHPPKELPGELLGYRLQYCRADEARPNTIDFGKDDQ----- 62
Query: 427 KDKHVHILIDQLTPGVKYQFTIR 449
H + L G Y F +
Sbjct: 63 -----HFTVTGLHKGTTYIFRLA 80
Score = 30.8 bits (70), Expect = 0.68
Identities = 13/84 (15%), Positives = 25/84 (29%), Gaps = 5/84 (5%)
Query: 205 LNISWK--SDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAI 262
+ W ++ + + Y R D + I D + L+ G Y ++ A
Sbjct: 23 ALLQWHPPKELPGELLGYRLQYCRADEARPNTIDFGKDDQHFTVTGLHKGTTYIFRLAAK 82
Query: 263 SH---GLRSEPHDYFQAVYPKPPT 283
+ G E P +
Sbjct: 83 NRAGLGEEFEKEIRTPEDLSGPSS 106
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 45.8 bits (109), Expect = 6e-06
Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 11/85 (12%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRT---EEDKTWVR---LPNVGT 330
P PPTNL + +V ++++ + + + + + E + W+ L N
Sbjct: 18 PGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPD 77
Query: 331 SLEAEVTDMVPGEK---CMIQVNSV 352
+ EV D+ P M QVN V
Sbjct: 78 ARSMEVPDLNPFTCYSFRMRQVNIV 102
Score = 38.1 bits (89), Expect = 0.003
Identities = 18/83 (21%), Positives = 30/83 (36%), Gaps = 18/83 (21%)
Query: 559 PEPITRINATEITDTSVSLTWD------SPRGEYNAFEVQY------LNTEGFLIQNLTL 606
P P T + + I SV+L + + + V+ E LI L+
Sbjct: 18 PGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWL---VEAQVGVVGEGEEWLLIHQLSN 74
Query: 607 H---TSIVIGDLKPHRNYTFTVI 626
S+ + DL P Y+F +
Sbjct: 75 EPDARSMEVPDLNPFTCYSFRMR 97
Score = 30.4 bits (69), Expect = 1.3
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 8/84 (9%)
Query: 370 PNPATYVAAL-VDASNVTLEF-PRPEGR--IEYYLVTWRGIGPEATSTELFTKNVTNDPE 425
P P T + + +VTL+F P +G+ I +LV + L ++N+P+
Sbjct: 18 PGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPD 77
Query: 426 DKDKHVHILIDQLTPGVKYQFTIR 449
+ + + L P Y F +R
Sbjct: 78 AR----SMEVPDLNPFTCYSFRMR 97
Score = 28.9 bits (65), Expect = 5.0
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 12/68 (17%)
Query: 138 DNGSKISY--VEIETLNGDSNQMF---------VDKTEYVLESLLPGRKYSINVQAV-SN 185
D + IS VE + + + D + L P YS ++ V
Sbjct: 43 DGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIV 102
Query: 186 GMESPSFP 193
G PS P
Sbjct: 103 GTSPPSQP 110
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 45.4 bits (108), Expect = 8e-06
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 7/81 (8%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRT--EEDKTWVRLPNVGTSLEA 334
P PP +L L +V + W S T++ I Y + W V +
Sbjct: 17 PNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQTT 76
Query: 335 EVTDMVPGEK---CMIQVNSV 352
++ P ++ VNS+
Sbjct: 77 AQLNLSPYVNYSFRVMAVNSI 97
Score = 40.0 bits (94), Expect = 5e-04
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 14/79 (17%)
Query: 559 PEPITRINATEITDTSVSLTWD------SPRGEYNAFEVQY--LNTEGFLIQNLTLH--- 607
P P + T+ D SV L+W SP ++ ++Y + L + T
Sbjct: 17 PNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFI---IEYEDAMHKPGLWHHQTEVSGT 73
Query: 608 TSIVIGDLKPHRNYTFTVI 626
+ +L P+ NY+F V+
Sbjct: 74 QTTAQLNLSPYVNYSFRVM 92
Score = 31.2 bits (71), Expect = 0.78
Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 12/86 (13%)
Query: 370 PNPATYVAAL-VDASNVTLEF-PRPEGR--IEYYLVTWRGIGPEATSTELFTKNVTNDPE 425
PNP + +V L + P + I +++ + +A + T
Sbjct: 17 PNPPFDLELTDQLDKSVQLSWTPGDDNNSPITKFIIEYE----DAMHKPGLWHHQTEVSG 72
Query: 426 DKDKHVHILIDQLTPGVKYQFTIRTV 451
+ L+P V Y F + V
Sbjct: 73 TQ----TTAQLNLSPYVNYSFRVMAV 94
Score = 28.5 bits (64), Expect = 5.5
Identities = 24/107 (22%), Positives = 36/107 (33%), Gaps = 12/107 (11%)
Query: 188 ESPSFPIIEDLRPIEFGLNISWK--SDVNSRQDNFEVIYNRNDTITEDPITV--VTTDSK 243
P + D + + +SW D NS F + Y V+
Sbjct: 18 NPPFDLELTDQL--DKSVQLSWTPGDDNNSPITKFIIEYEDAMHKPGLWHHQTEVSGTQT 75
Query: 244 LLLENLYPGAGYSIQVFAI-SHGL--RSEPHDYFQ---AVYPKPPTN 284
NL P YS +V A+ S G SE + + + K PT+
Sbjct: 76 TAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEPDKNPTS 122
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 45.1 bits (107), Expect = 1e-05
Identities = 13/94 (13%), Positives = 24/94 (25%), Gaps = 15/94 (15%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEPVGS----IFTEYSIRYRTEEDKTWVRLPNV-------- 328
P N+ + +S V W Y I Y + + ++
Sbjct: 17 APGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQ 76
Query: 329 GTSLEAEVTDMVPGEKCMIQV---NSVSYSVESA 359
G+ + + P + V N S
Sbjct: 77 GSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPASP 110
Score = 37.4 bits (87), Expect = 0.005
Identities = 21/108 (19%), Positives = 32/108 (29%), Gaps = 20/108 (18%)
Query: 563 TRINATEITDTSVSLTWDSP-----RGEYNAFEVQY--------LNTEGFLIQNLTLH-- 607
+ + T + WD RG + + Y N + LT
Sbjct: 19 GNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGS 78
Query: 608 -TSIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLPG 654
T ++ L+P +YT V V +G S F T E
Sbjct: 79 KTHGMLPGLEPFSHYTLNVRVVNGKGEGP--ASPDRV--FNTPEGSGP 122
Score = 32.0 bits (73), Expect = 0.36
Identities = 9/69 (13%), Positives = 23/69 (33%), Gaps = 12/69 (17%)
Query: 205 LNISWK----SDVNSRQDNFEVIYNRNDT--------ITEDPITVVTTDSKLLLENLYPG 252
+ W + + + Y + + I + +T + + +L L P
Sbjct: 31 AEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPF 90
Query: 253 AGYSIQVFA 261
+ Y++ V
Sbjct: 91 SHYTLNVRV 99
Score = 30.8 bits (70), Expect = 0.93
Identities = 14/65 (21%), Positives = 26/65 (40%), Gaps = 9/65 (13%)
Query: 140 GSKISYVEIETLNGDSNQMFV--------DKTEYVLESLLPGRKYSINVQAV-SNGMESP 190
G +I Y + ++ + + + KT +L L P Y++NV+ V G
Sbjct: 49 GYRIYYWKTQSSSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVRVVNGKGEGPA 108
Query: 191 SFPII 195
S +
Sbjct: 109 SPDRV 113
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 44.3 bits (105), Expect = 2e-05
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSI-RYRTEEDKTWVRLPNVGTSLEAE 335
P PP+ + + N+V + W+ + Y I + +W + N +
Sbjct: 16 PGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYT 75
Query: 336 VTDMVPG 342
V + P
Sbjct: 76 VRGLRPN 82
Score = 39.3 bits (92), Expect = 0.001
Identities = 16/75 (21%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 559 PEPITRINATEITDTSVSLTWDSPR---GEYNAFEVQYLNTEG----FLIQNLTLHTSIV 611
P P ++ T++T SV+L+W +A+ ++ + + N T
Sbjct: 16 PGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYT 75
Query: 612 IGDLKPHRNYTFTVI 626
+ L+P+ Y F V
Sbjct: 76 VRGLRPNTIYLFMVR 90
Score = 31.6 bits (72), Expect = 0.50
Identities = 13/63 (20%), Positives = 21/63 (33%), Gaps = 7/63 (11%)
Query: 138 DNGSKISY--VEIETLNGDS----NQMFVDKTEYVLESLLPGRKYSINVQAV-SNGMESP 190
S +E + + + V T Y + L P Y V+A+ G+ P
Sbjct: 41 PGTLPASAYIIEAFSQSVSNSWQTVANHVKTTLYTVRGLRPNTIYLFMVRAINPQGLSDP 100
Query: 191 SFP 193
S
Sbjct: 101 SPM 103
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 46.3 bits (109), Expect = 2e-05
Identities = 18/109 (16%), Positives = 37/109 (33%), Gaps = 16/109 (14%)
Query: 255 YSIQVFAISHGLRSEPHDYF--QAVYPKPPTNLTLEKTSSNAVLVKWKEPVGSIFT---- 308
+S+Q+ S E + +++ P PP ++T+ T S + W+
Sbjct: 75 FSVQITDQSGQYSQECGSFLLAESIKPAPPFDVTV--TFSGQYQISWRSDYEDPAFYMLK 132
Query: 309 ---EYSIRYRTEEDK-----TWVRLPNVGTSLEAEVTDMVPGEKCMIQV 349
+Y ++YR D + S+ + +QV
Sbjct: 133 GKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQV 181
Score = 32.8 bits (74), Expect = 0.52
Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 23/121 (19%)
Query: 167 LESLLPGRKYSINVQAVSNGMESP--SFPIIEDLRP---------IEFGLNISWKSDVNS 215
+ + +S+ + S SF + E ++P ISW+SD
Sbjct: 66 VFHFMADDIFSVQITDQSGQYSQECGSFLLAESIKPAPPFDVTVTFSGQYQISWRSDYED 125
Query: 216 RQDN-------FEVIYNR-----NDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAIS 263
+E+ Y + I+V + LL + Y +QV A
Sbjct: 126 PAFYMLKGKLQYELQYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAGP 185
Query: 264 H 264
Sbjct: 186 M 186
Score = 32.4 bits (73), Expect = 0.67
Identities = 27/196 (13%), Positives = 54/196 (27%), Gaps = 33/196 (16%)
Query: 489 RYTPQNSNHFDFYRFTLSEPDI---PVIEKAANDTDRKVTFN----NLTPGKLYNFTVWT 541
P ++ + + + A N T T + + +++ +
Sbjct: 22 NLHPSTLTLTWQDQYEELKDEATSCSLHRSAHNATHATYTCHMDVFHFMADDIFSVQITD 81
Query: 542 VADGVLSTP--IQRHDRLYPEPITRINATEITDTSVSLTWDSPRGEYNA--------FEV 591
+ + + P P + T ++W S + +E+
Sbjct: 82 QSGQYSQECGSFLLAESIKPAPPFDVTVTFSGQ--YQISWRSDYEDPAFYMLKGKLQYEL 139
Query: 592 QYLNTEG--------FLIQNLTLHTSIVIGDLKPHRNYTFTVIVRSGTESSVLRR----S 639
QY N LI + S++ + + +Y V SS S
Sbjct: 140 QYRNRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQVRAGPMPGSSYQGTWSEWS 199
Query: 640 LPVSAIFQTHESLPGK 655
PV FQT +
Sbjct: 200 DPVI--FQTQSEELKE 213
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 44.0 bits (104), Expect = 2e-05
Identities = 12/73 (16%), Positives = 21/73 (28%), Gaps = 3/73 (4%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEV 336
P L T +N+ + WK+P Y + + + VG V
Sbjct: 11 ATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREV-YVGKETMCTV 69
Query: 337 TDMVPGEKCMIQV 349
+ +V
Sbjct: 70 DGLHFNSTYNARV 82
Score = 39.4 bits (92), Expect = 7e-04
Identities = 12/71 (16%), Positives = 24/71 (33%), Gaps = 5/71 (7%)
Query: 561 PITRINATEITDTSVSLTWDSPR---GEYNAFEVQY--LNTEGFLIQNLTLHTSIVIGDL 615
PI ++ + S +L+W P + + ++ N F + T + L
Sbjct: 13 PILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYVGKETMCTVDGL 72
Query: 616 KPHRNYTFTVI 626
+ Y V
Sbjct: 73 HFNSTYNARVK 83
Score = 35.1 bits (81), Expect = 0.021
Identities = 10/57 (17%), Positives = 21/57 (36%), Gaps = 4/57 (7%)
Query: 138 DNGSKISY--VEIETLNGDSNQMFVD--KTEYVLESLLPGRKYSINVQAVSNGMESP 190
+ +E++ NG + +T ++ L Y+ V+A + SP
Sbjct: 36 LSTVPADGYILELDDGNGGQFREVYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSP 92
Score = 30.5 bits (69), Expect = 0.93
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 2/69 (2%)
Query: 473 EVLVVNNQQSTDSVTLRYTPQNSNH--FDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLT 530
+ + +S TL + + D Y L + + + + T + L
Sbjct: 14 ILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDDGNGGQFREVYVGKETMCTVDGLH 73
Query: 531 PGKLYNFTV 539
YN V
Sbjct: 74 FNSTYNARV 82
Score = 28.6 bits (64), Expect = 5.1
Identities = 10/84 (11%), Positives = 23/84 (27%), Gaps = 14/84 (16%)
Query: 369 SPNPATYVAALVDASNVTLEFPRPE---GRIEYYLVTWRGIGPEATSTELFTKNVTNDPE 425
+ ++ TL + +P + Y++ G E++ T
Sbjct: 11 ATPILQLEECCTHNNSATLSWKQPPLSTVPADGYILELDD-GNGGQFREVYVGKET---- 65
Query: 426 DKDKHVHILIDQLTPGVKYQFTIR 449
+D L Y ++
Sbjct: 66 ------MCTVDGLHFNSTYNARVK 83
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 47.5 bits (113), Expect = 2e-05
Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 4/69 (5%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAE 335
P+PP +E AV++ WK P GS+ T Y+I R +W +
Sbjct: 10 PEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTYTT- 68
Query: 336 VTDMVPGEK 344
+ + G++
Sbjct: 69 IEGLRAGKQ 77
Score = 36.4 bits (84), Expect = 0.058
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNA----FEVQYLNTEGFLIQNL--TLHTSIVI 612
PEP I D +V L+W P + + + ++ G + +T I
Sbjct: 10 PEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRYTYTTI 69
Query: 613 GDLKPHRNYTFTVIVRS 629
L+ + Y F +I +
Sbjct: 70 EGLRAGKQYEFRIIAEN 86
Score = 31.7 bits (72), Expect = 1.5
Identities = 23/87 (26%), Positives = 37/87 (42%), Gaps = 8/87 (9%)
Query: 188 ESPSFPIIEDLRPIEFGLNISWKS---DVNSRQDNFEVIYNRNDTITEDPITVVTTDSKL 244
E P FPIIE++ + +SWK D S N+ + + P + +
Sbjct: 11 EPPRFPIIENILDEA--VILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAK-SRYTYT 67
Query: 245 LLENLYPGAGYSIQVFAI-SHGLRSEP 270
+E L G Y ++ A HG +S+P
Sbjct: 68 TIEGLRAGKQYEFRIIAENKHG-QSKP 93
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 43.4 bits (102), Expect = 3e-05
Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 9/87 (10%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKTWVRLPNV--GTSLEA 334
PP L +T VL+ W P Y + R + + W L GT E
Sbjct: 8 LSPPRGLVAVRT-PRGVLLHWDPPELVPKRLDGYVLEGR-QGSQGWEVLDPAVAGTETEL 65
Query: 335 EVTDMVPGEKC---MIQVNSVSYSVES 358
V ++ ++ S S
Sbjct: 66 LVPGLIKDVLYEFRLVAFAGSFVSDPS 92
Score = 30.3 bits (68), Expect = 1.1
Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 236 TVVTTDSKLLLENLYPGAGYSIQVFAISHGLRSEPHD--YFQAVYPKPPTN 284
V T+++LL+ L Y ++ A + S+P + P++
Sbjct: 57 AVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSGPSS 107
Score = 29.9 bits (67), Expect = 1.7
Identities = 8/61 (13%), Positives = 20/61 (32%), Gaps = 7/61 (11%)
Query: 138 DNGSKISY--VEIETLNGD----SNQMFVDKTEYVLESLLPGRKYSINVQAV-SNGMESP 190
++ +E + + +TE ++ L+ Y + A + + P
Sbjct: 32 LVPKRLDGYVLEGRQGSQGWEVLDPAVAGTETELLVPGLIKDVLYEFRLVAFAGSFVSDP 91
Query: 191 S 191
S
Sbjct: 92 S 92
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 43.4 bits (102), Expect = 4e-05
Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 18/99 (18%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKT-------------WV 323
PPT + + S +V+++W P G + ++YR +
Sbjct: 3 TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 62
Query: 324 RLPNVGTSLEAEVTDMVPGEKCMIQV---NSVSYSVESA 359
+G S A VTD+ P ++ S + + ES
Sbjct: 63 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESN 101
Score = 41.4 bits (97), Expect = 2e-04
Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 19/87 (21%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNA---FEVQY----------------LNTEGF 599
P T N T ++D SV L W PR + F+VQY +
Sbjct: 3 TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 62
Query: 600 LIQNLTLHTSIVIGDLKPHRNYTFTVI 626
L + + DLKP Y F ++
Sbjct: 63 WNSELGKSFTASVTDLKPQHTYRFRIL 89
Score = 33.4 bits (76), Expect = 0.11
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 6/78 (7%)
Query: 380 VDASNVTLEFPRPE---GRIEYYLVTWRGIGPEA---TSTELFTKNVTNDPEDKDKHVHI 433
+ +V L + P I + V +R +G T+ + + K
Sbjct: 14 LSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPKWNSELGKSFTA 73
Query: 434 LIDQLTPGVKYQFTIRTV 451
+ L P Y+F I V
Sbjct: 74 SVTDLKPQHTYRFRILAV 91
Score = 28.0 bits (62), Expect = 8.4
Identities = 10/48 (20%), Positives = 12/48 (25%), Gaps = 1/48 (2%)
Query: 147 EIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAV-SNGMESPSFP 193
I N + L P Y + AV SN S
Sbjct: 55 NIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT 102
>1k85_A Chitinase A1; fibronectin type III domain, chitin binding domain,
carbohydrase, horizontal gene transfer, hydrolase; NMR
{Bacillus circulans} SCOP: b.1.2.1
Length = 88
Score = 42.3 bits (100), Expect = 4e-05
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 559 PEPITRINATEITDTSVSLTWDSPRGEYNA--FEVQYLNTEGFLIQNLTLHTSIVIGDLK 616
P T + +T T +S++L+W + ++V Y L +T T+ I L
Sbjct: 4 PTAPTNLASTAQTTSSITLSWTASTDNVGVTGYDV-YNG--TALATTVT-GTTATISGLA 59
Query: 617 PHRNYTFTVIVR--SGTESSVLRRSLPVSA 644
+YTFTV + +G S+ S VS
Sbjct: 60 ADTSYTFTVKAKDAAGNVSA---ASNAVSV 86
Score = 27.2 bits (61), Expect = 8.9
Identities = 20/74 (27%), Positives = 26/74 (35%), Gaps = 14/74 (18%)
Query: 482 STDSVTLRYTPQNSN----HFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNF 537
+T S+TL +T N +D Y T A T T + L Y F
Sbjct: 16 TTSSITLSWTASTDNVGVTGYDVYNGT---------ALATTVTGTTATISGLAADTSYTF 66
Query: 538 TVWTV-ADGVLSTP 550
TV A G +S
Sbjct: 67 TVKAKDAAGNVSAA 80
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 42.8 bits (101), Expect = 5e-05
Identities = 16/91 (17%), Positives = 29/91 (31%), Gaps = 11/91 (12%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTW----VRLPNVGTS 331
P P+ +E SS A + + EP G +Y +R ++ W
Sbjct: 7 PSSPSIDQVEPYSSTAQVQ-FDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 65
Query: 332 LEAEVTDMVPGEKCMIQV---NSVSYSVESA 359
+ + P +++ N SA
Sbjct: 66 GIVTIVGLKPETTYAVRLAALNGKGLGEISA 96
Score = 35.4 bits (82), Expect = 0.015
Identities = 8/71 (11%), Positives = 25/71 (35%), Gaps = 11/71 (15%)
Query: 567 ATEITDTSVSLTWDSPRGEYNA----FEVQY-------LNTEGFLIQNLTLHTSIVIGDL 615
E ++ + +D P ++ ++ +++ + + ++ + I L
Sbjct: 14 QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGL 73
Query: 616 KPHRNYTFTVI 626
KP Y +
Sbjct: 74 KPETTYAVRLA 84
Score = 32.0 bits (73), Expect = 0.27
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 10/84 (11%)
Query: 370 PNPATYVAALVDASNVTLEFPRPE----GRIEYYLVTWRGIGPEATSTELFTKNVTNDPE 425
P+ + +S ++F PE I Y WR +G E ++ + +
Sbjct: 7 PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM-- 64
Query: 426 DKDKHVHILIDQLTPGVKYQFTIR 449
+ I L P Y +
Sbjct: 65 ----EGIVTIVGLKPETTYAVRLA 84
Score = 29.7 bits (67), Expect = 1.9
Identities = 13/92 (14%), Positives = 32/92 (34%), Gaps = 9/92 (9%)
Query: 187 MESPSFPIIEDLRPIEFGLNISWK---SDVNSRQDNFEVIYNRND----TITEDPITVVT 239
M++PS P I+ + P + + + ++ + +
Sbjct: 4 MDTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 63
Query: 240 TDSKLLLENLYPGAGYSIQVFAI-SHGLRSEP 270
+ + + L P Y++++ A+ GL E
Sbjct: 64 MEGIVTIVGLKPETTYAVRLAALNGKGL-GEI 94
Score = 29.3 bits (66), Expect = 2.4
Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 10/69 (14%)
Query: 136 DCDNGSKISYVEIE---------TLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAV-SN 185
+ G I + E + + + L P Y++ + A+
Sbjct: 30 EATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAALNGK 89
Query: 186 GMESPSFPI 194
G+ S
Sbjct: 90 GLGEISAAS 98
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 43.2 bits (102), Expect = 5e-05
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 8/71 (11%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTW----VRLPNVGTS 331
P P+ +E SS V++ EP G +Y +R ++ W
Sbjct: 8 PSSPSIDQVEPYSS-TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 66
Query: 332 LEAEVTDMVPG 342
+ + P
Sbjct: 67 GIVTIVGLKPE 77
Score = 38.2 bits (89), Expect = 0.002
Identities = 9/73 (12%), Positives = 27/73 (36%), Gaps = 11/73 (15%)
Query: 564 RINATEITDTSVSLTWDSPRGEYNA----FEVQY-------LNTEGFLIQNLTLHTSIVI 612
I+ E ++ + +D P ++ ++ +++ + + ++ + I
Sbjct: 12 SIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTI 71
Query: 613 GDLKPHRNYTFTV 625
LKP Y +
Sbjct: 72 VGLKPETTYAVRL 84
Score = 34.7 bits (80), Expect = 0.037
Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 10/84 (11%)
Query: 370 PNPATYVAALVDASNVTLEFPRPE----GRIEYYLVTWRGIGPEATSTELFTKNVTNDPE 425
P+ + +S ++F PE I Y WR +G E ++ + +
Sbjct: 8 PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEG 67
Query: 426 DKDKHVHILIDQLTPGVKYQFTIR 449
+ I L P Y +
Sbjct: 68 ------IVTIVGLKPETTYAVRLA 85
Score = 31.7 bits (72), Expect = 0.52
Identities = 7/57 (12%), Positives = 16/57 (28%), Gaps = 9/57 (15%)
Query: 136 DCDNGSKISY--VEIETLNGDSNQMF-------VDKTEYVLESLLPGRKYSINVQAV 183
+ G I E + + + + L P Y++ + A+
Sbjct: 31 EATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLKPETTYAVRLAAL 87
Score = 29.0 bits (65), Expect = 3.9
Identities = 11/86 (12%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 184 SNGMESPSFPIIEDLRPIEFGLNISWK---SDVNSRQDNFEVIYNRND----TITEDPIT 236
S+G PS P I+ + P + + + ++ +
Sbjct: 2 SSGSSGPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAK 61
Query: 237 VVTTDSKLLLENLYPGAGYSIQVFAI 262
+ + + + L P Y++++ A+
Sbjct: 62 EASMEGIVTIVGLKPETTYAVRLAAL 87
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 42.8 bits (101), Expect = 7e-05
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 279 PKPPTNLTL-EKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEA 334
P P ++ K S++ + W P G+ +Y + + + G + E
Sbjct: 18 PGIPVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREH 77
Query: 335 EVTDMVPG 342
+ PG
Sbjct: 78 LCDRLNPG 85
Score = 36.6 bits (85), Expect = 0.008
Identities = 14/72 (19%), Positives = 23/72 (31%), Gaps = 7/72 (9%)
Query: 561 PITRINATEITDTSVSLTWDSPRGEYNA----FEVQY---LNTEGFLIQNLTLHTSIVIG 613
P+ +I S +TWD P+ A + V+ N + + +
Sbjct: 21 PVKPSVKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCD 80
Query: 614 DLKPHRNYTFTV 625
L P Y V
Sbjct: 81 RLNPGCFYRLRV 92
Score = 30.9 bits (70), Expect = 0.93
Identities = 12/60 (20%), Positives = 24/60 (40%), Gaps = 6/60 (10%)
Query: 138 DNGSKISYVEIETLNGDSNQMF-----VDKTEYVLESLLPGRKYSINVQAV-SNGMESPS 191
+ G+ I+ +E G + + E++ + L PG Y + V + G + S
Sbjct: 45 NGGATINKYVVEMAEGSNGNKWEMIYSGATREHLCDRLNPGCFYRLRVYCISDGGQSAVS 104
Score = 28.9 bits (65), Expect = 3.8
Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 14/81 (17%)
Query: 376 VAALVDASNVTLEFPRPE----GRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHV 431
V + + + + + P+ I Y+V +++
Sbjct: 26 VKGKIHSHSFKITWDPPKDNGGATINKYVVEMAEGSNGNKWEMIYSGATRE--------- 76
Query: 432 HILIDQLTPGVKYQFTIRTVS 452
L D+L PG Y+ + +S
Sbjct: 77 -HLCDRLNPGCFYRLRVYCIS 96
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 42.4 bits (100), Expect = 8e-05
Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEV 336
P P++L + +N +++ W P+ + Y I Y + +
Sbjct: 18 PDQPSSLHVR-PQTNCIIMSWTPPLNPNIVVRGYIIGYG-VGSPYAETVRVDSKQRYYSI 75
Query: 337 TDMVPGEKCMIQV 349
+ +I +
Sbjct: 76 ERLESSSHYVISL 88
Score = 38.2 bits (89), Expect = 0.002
Identities = 10/88 (11%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 544 DGVLSTPIQRHDRLY-PEPITRINATEITDTSVSLTWDSPR---GEYNAFEVQY--LNTE 597
S P D P+ + ++ + ++W P + + Y +
Sbjct: 2 SSGSSGPENDLDESQVPDQPSSLHVRP-QTNCIIMSWTPPLNPNIVVRGYIIGYGVGSPY 60
Query: 598 GFLIQNLTLHTSIVIGDLKPHRNYTFTV 625
++ + I L+ +Y ++
Sbjct: 61 AETVRVDSKQRYYSIERLESSSHYVISL 88
Score = 32.8 bits (75), Expect = 0.19
Identities = 14/74 (18%), Positives = 26/74 (35%), Gaps = 3/74 (4%)
Query: 190 PSFPIIEDLRPIEFGLNISWK--SDVNSRQDNFEVIYNRNDTITEDPITVVTTDSKLLLE 247
P P +RP + +SW + N + + Y + + V + +E
Sbjct: 18 PDQPSSLHVRPQTNCIIMSWTPPLNPNIVVRGYIIGYGVGSP-YAETVRVDSKQRYYSIE 76
Query: 248 NLYPGAGYSIQVFA 261
L + Y I + A
Sbjct: 77 RLESSSHYVISLKA 90
Score = 32.4 bits (74), Expect = 0.24
Identities = 9/83 (10%), Positives = 27/83 (32%), Gaps = 14/83 (16%)
Query: 370 PNPATYVAALVDASNVTLEFPRPE---GRIEYYLVTWRGIGPEATSTELFTKNVTNDPED 426
P+ + + + + + + P + Y++ + G+G T
Sbjct: 18 PDQPSSLHVRPQTNCIIMSWTPPLNPNIVVRGYIIGY-GVGSPYAETVRVDSKQR----- 71
Query: 427 KDKHVHILIDQLTPGVKYQFTIR 449
+ I++L Y +++
Sbjct: 72 -----YYSIERLESSSHYVISLK 89
Score = 30.1 bits (68), Expect = 1.6
Identities = 10/63 (15%), Positives = 23/63 (36%), Gaps = 5/63 (7%)
Query: 138 DNGSKISY--VEIETLNGDSNQMFVD--KTEYVLESLLPGRKYSINVQAV-SNGMESPSF 192
+ + + + + + VD + Y +E L Y I+++A + G P +
Sbjct: 42 NPNIVVRGYIIGYGVGSPYAETVRVDSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLY 101
Query: 193 PII 195
Sbjct: 102 ESA 104
Score = 29.3 bits (66), Expect = 2.5
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 13/70 (18%)
Query: 685 ITFEWSLPGSEQNGVIRKFTISYAQEAACNHNQRLHAKFQLPRVNSKKLKG-WPGTLRTD 743
I W+ P N V+R + I Y + R+ + ++ +
Sbjct: 33 IIMSWT-PPLNPNIVVRGYIIGYGVGSPYAETVRVD-----SKQRYYSIERLESSS---- 82
Query: 744 WRSYIYKLQA 753
Y+ L+A
Sbjct: 83 --HYVISLKA 90
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 41.8 bits (98), Expect = 1e-04
Identities = 12/79 (15%), Positives = 24/79 (30%), Gaps = 14/79 (17%)
Query: 561 PITRINATEITDTSVSLTWDSPRG--------EYNA------FEVQYLNTEGFLIQNLTL 606
P R + ++++ W S +Y F Y + + ++I
Sbjct: 19 PSIREELCTASHDTITVHWISDDEFSISSYELQYTIFTGQANFISLYNSVDSWMIVPNIK 78
Query: 607 HTSIVIGDLKPHRNYTFTV 625
+ L+ Y F V
Sbjct: 79 QNHYTVHGLQSGTRYIFIV 97
Score = 41.8 bits (98), Expect = 2e-04
Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 13/101 (12%)
Query: 263 SHGLRSEPHDYFQAVYPKPPT-NLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKT 321
S G E DY A P PP+ L S + + V W + Y ++Y +
Sbjct: 2 SSGSSGEGLDYLTA--PNPPSIREELCTASHDTITVHWISDDEFSISSYELQYTIFTGQA 59
Query: 322 WVRLPNVGT----------SLEAEVTDMVPGEKCMIQVNSV 352
V + G + + V ++
Sbjct: 60 NFISLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAI 100
Score = 35.3 bits (81), Expect = 0.028
Identities = 17/85 (20%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 370 PNPATYVAALVDASN--VTLEFPRPEG-RIEYYLVTWRGIGPEATSTELFTKNVTNDPED 426
PNP + L AS+ +T+ + + I Y + + +A L+ +
Sbjct: 16 PNPPSIREELCTASHDTITVHWISDDEFSISSYELQYTIFTGQANFISLYNSVDSWMIVP 75
Query: 427 KDKHVHILIDQLTPGVKYQFTIRTV 451
K H + L G +Y F ++ +
Sbjct: 76 NIKQNHYTVHGLQSGTRYIFIVKAI 100
Score = 33.0 bits (75), Expect = 0.16
Identities = 17/130 (13%), Positives = 34/130 (26%), Gaps = 23/130 (17%)
Query: 78 PEPLPVLDLTAVMDDKTGDLFISWKPDNASYQDMYKISIKSILLEEEHQKQFLMGFLGDC 137
P P P + + + W D+ Y++ ++
Sbjct: 16 PNP-PSIREELCTASHDT-ITVHWISDDEFSISSYEL---------QYTIFTGQANFISL 64
Query: 138 DNGSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAV-SNGMESPSFPIIE 196
N S++ + + Y + L G +Y V+A+ G + P
Sbjct: 65 YNSVD-SWMIVPNIKQ---------NHYTVHGLQSGTRYIFIVKAINQAGSRNSE-PTRL 113
Query: 197 DLRPIEFGLN 206
F
Sbjct: 114 KTNSQPFKSG 123
Score = 29.1 bits (65), Expect = 3.4
Identities = 10/69 (14%), Positives = 20/69 (28%), Gaps = 11/69 (15%)
Query: 482 STDSVTLRYTPQNSNHFDFYRFTLSEPDIPVIEKAANDTDR-----------KVTFNNLT 530
S D++T+ + + Y + + ++ T + L
Sbjct: 29 SHDTITVHWISDDEFSISSYELQYTIFTGQANFISLYNSVDSWMIVPNIKQNHYTVHGLQ 88
Query: 531 PGKLYNFTV 539
G Y F V
Sbjct: 89 SGTRYIFIV 97
>2i6j_A Ssoptp, sulfolobus solfataricus protein tyrosine phosphatase; PTP
domain, hydrolase; 1.66A {Sulfolobus solfataricus} PDB:
2i6i_A 2i6m_A 3ro1_A* 2i6o_A* 2dxp_A* 2i6p_A*
Length = 161
Score = 42.5 bits (100), Expect = 2e-04
Identities = 12/49 (24%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
Query: 1097 RSGTLIALDRILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQ 1145
R+GT++A IL + +++ + +R R VQT +Q + + +
Sbjct: 102 RTGTILASYLILT-----EGLEVESAIDEVRLVRPGAVQTYEQEMFLLR 145
>1fyh_B Interferon-gamma receptor alpha chain; cytokine-receptor complex,
fibronectin type-III, immune system; 2.04A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1fg9_C 1jrh_I
Length = 229
Score = 43.2 bits (101), Expect = 2e-04
Identities = 24/194 (12%), Positives = 58/194 (29%), Gaps = 23/194 (11%)
Query: 280 KPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKTWVRLPNVG--TSLEAEVT 337
PTN+T+E + N ++ W+ + +++ + K + + ++
Sbjct: 13 PTPTNVTIESYNMNPIV-YWEYQIMPQVPVFTVEVKNYGVKNSEWIDACINISHHYCNIS 71
Query: 338 DMV--PGEKCMIQVNSVSYSVESAH------PLQINHTISPNPATYVAALVDASNVTLEF 389
D V P ++V + ESA+ + + I P P + + +
Sbjct: 72 DHVGDPSNSLWVRVKARVGQKESAYAKSEEFAVCRDGKIGP-PKLDIRKEEKQIMIDIFH 130
Query: 390 PRPEGR-----------IEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQL 438
P Y+ + S + + + + + I
Sbjct: 131 PSVFVNGDEQEVDYDPETTCYIRVYNVYVRMNGSEIQYKILTQKEDDCDEIQCQLAIPVS 190
Query: 439 TPGVKYQFTIRTVS 452
+ +Y + V
Sbjct: 191 SLNSQYCVSAEGVL 204
>3d85_D IL-12B, interleukin-12 subunit P40, cytotoxic lymphocyte; FAB,
immune system/cytokine complex; 1.90A {Homo sapiens}
SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 3d87_B* 3duh_A*
1f42_A* 1f45_A* 3hmx_A* 3qwr_A*
Length = 306
Score = 43.2 bits (100), Expect = 3e-04
Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 14/105 (13%)
Query: 255 YSIQVFAISHGLRSEPHDYF---QAVYPKPPTNLTLEKTS-SNAVLVKWKEPVG-----S 305
+ V A+ + F + P PP NL L+ S V V W+ P S
Sbjct: 186 IEVMVDAVHKLKYEQYTSSFFIRDIIKPDPPKNLQLKPLKNSRQVEVSWEYPDTWSTPHS 245
Query: 306 IFT-EYSIRYRTEEDKTWVRLPNVGTSLEAEVTDMVPGEKCMIQV 349
F+ + ++ + + + + ++ + I V
Sbjct: 246 YFSLTFCVQVQGKSKREK----KDRVFTDKTSATVICRKNASISV 286
>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor
complex, immune system; 2.52A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R
Length = 214
Score = 41.7 bits (97), Expect = 6e-04
Identities = 24/188 (12%), Positives = 53/188 (28%), Gaps = 16/188 (8%)
Query: 281 PPTNLTLEKTSSNAVLVKWK-EPVGSIFTEYSIRYRTEEDKTWVRLPNVGTSLE----AE 335
P ++ E + +L W P S T Y + ++W + +L A
Sbjct: 7 SPPSVWFEAEFFHHIL-HWTPIPQQSESTCYEVALLRYGIESWNSISQCSQTLSYDLTAV 65
Query: 336 VTDMVPGEKCMIQVNSV-----SYSVESAHPLQINHTISPNPATYVAALVDASNVTLEFP 390
D+ +V +V S + ++ + + ++ P
Sbjct: 66 TLDLYHSNGYRARVRAVDGSRHSQWTVTNTRFSVDEVTLTVGSVNLEIHNGFILGKIQLP 125
Query: 391 RPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDK---HVHILIDQLTPGVKYQFT 447
RP+ T+ I E+ + V K H + ++
Sbjct: 126 RPKMAPAQ--DTYESIFSHFREYEIAIRKVPGQFTFTHKKVKHEQFSLLTSGEVGEFCVQ 183
Query: 448 IRTVSYNL 455
++ +
Sbjct: 184 VKPSVASR 191
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 39.4 bits (92), Expect = 8e-04
Identities = 23/107 (21%), Positives = 38/107 (35%), Gaps = 12/107 (11%)
Query: 275 QAVYPKPPTNLTLEKTSSNAVLVKWKEP----VGSIFTEYSIRYRTEEDKTWVRLPNVGT 330
+ +PP N+ + VL+ W++ S T Y + YRT L T
Sbjct: 15 KTPPSQPPGNVVWN-ATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNTNKT 73
Query: 331 SLEAEVTDMVPGEKCMIQV---NSVSYSVESAHPLQINHTISPNPAT 374
S E + E +I+V S ++I S P++
Sbjct: 74 SAELVLP---IKEDYIIEVKATTDGGDGTSSE-QIRIPRITSSGPSS 116
Score = 38.7 bits (90), Expect = 0.002
Identities = 22/105 (20%), Positives = 33/105 (31%), Gaps = 16/105 (15%)
Query: 559 PEPITRINATEITDTSVSLTWDSP-----RGEYNAFEVQYLNTEGFLIQNLTLHTSIVIG 613
P TDT V L W+ E ++V Y + +Q L + +
Sbjct: 18 PSQPPGNVVWNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQVLNTNKTSAEL 77
Query: 614 DLKPHRNYTFTVIVRS----GTESSVLRRSLPVSAIFQTHESLPG 654
L +Y V + GT S +R I + S P
Sbjct: 78 VLPIKEDYIIEVKATTDGGDGTSSEQIR-------IPRITSSGPS 115
Score = 28.3 bits (63), Expect = 6.9
Identities = 14/121 (11%), Positives = 24/121 (19%), Gaps = 44/121 (36%)
Query: 803 APPRPSSQVVPTEVCRTSTTIQIRFRKNYFSEKNGAIIYYTVIVAEDDSKNSSGLEMPSW 862
P +P VV T T + + + + E + Y V N
Sbjct: 17 PPSQPPGNVV---WNATDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNVQ------- 66
Query: 863 RDVQAYSVWPPYQVLEPFQFFKNMSVEDFTIGEESCEGKTGYCNGPLKSGSTYKVKIRAF 922
L Y ++++A
Sbjct: 67 ----------------------------------VLNTNKTSAELVLPIKEDYIIEVKAT 92
Query: 923 T 923
T
Sbjct: 93 T 93
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 39.5 bits (92), Expect = 8e-04
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 552 QRHDRLYPEPITRINATEITDTSVSLTWDSPRGEY--NAFEVQYLNTEG------FLIQN 603
Q L + N +T T+V +TW R + V Y T G + +
Sbjct: 9 QVQKELGDVLVRLHNPVVLTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLD 68
Query: 604 LTLH--TSIVIGDLKPHRNYTFTV 625
+ S V+ +LK Y V
Sbjct: 69 AKVPTERSAVLVNLKKGVTYEIKV 92
Score = 36.4 bits (84), Expect = 0.010
Identities = 16/93 (17%), Positives = 32/93 (34%), Gaps = 10/93 (10%)
Query: 380 VDASNVTLEF--PRPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQ 437
+ + V + + R I+ Y V +R ++ + E ++
Sbjct: 27 LTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERS-----AVLVN 81
Query: 438 LTPGVKYQFTIRTVSYNLESGVTS--LSARTMP 468
L GV Y+ +R + G+ S + RT
Sbjct: 82 LKKGVTYEIKVRPYFNEFQ-GMDSESKTVRTTE 113
Score = 35.6 bits (82), Expect = 0.017
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 16/78 (20%)
Query: 122 EEEHQKQFLMGFLGDCDNGSKISYVEIETLNGDSNQMFVDK-----TEYVLESLLPGRKY 176
+ Q QF+ G+ ++ Y + L S+ +D VL +L G Y
Sbjct: 37 TVDRQPQFIQGY--------RVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVTY 88
Query: 177 SINVQAVSN---GMESPS 191
I V+ N GM+S S
Sbjct: 89 EIKVRPYFNEFQGMDSES 106
Score = 27.9 bits (62), Expect = 10.0
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
Query: 865 VQAYSVWPPYQVLEPFQFFKNMSVEDFTIGEESCEGKTGYCNGPLKSGSTYKVKIRAFTT 924
+Q Y V Y+ Q + D + E LK G TY++K+R +
Sbjct: 45 IQGYRVM--YRQTSGLQATSSWQNLDAKVPTERSAVLVN-----LKKGVTYEIKVRPYFN 97
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 39.4 bits (92), Expect = 0.001
Identities = 13/72 (18%), Positives = 26/72 (36%), Gaps = 6/72 (8%)
Query: 559 PEPITRINATEITDTSVSLTWDSPR---GEYNAFEVQY--LNTEGFLIQNLTLHTSIVIG 613
PE + ++ TS+ ++W P + + Y + I+ I
Sbjct: 28 PEVPSSLHVR-PLVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKVDYKQRYYTIE 86
Query: 614 DLKPHRNYTFTV 625
+L P +Y T+
Sbjct: 87 NLDPSSHYVITL 98
Score = 39.0 bits (91), Expect = 0.002
Identities = 11/73 (15%), Positives = 26/73 (35%), Gaps = 4/73 (5%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV--GSIFTEYSIRYRTEEDKTWVRLPNVGTSLEAEV 336
P+ P++L + +++V W P + Y+I Y + +
Sbjct: 28 PEVPSSLHVR-PLVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKVD-YKQRYYTI 85
Query: 337 TDMVPGEKCMIQV 349
++ P +I +
Sbjct: 86 ENLDPSSHYVITL 98
Score = 34.0 bits (78), Expect = 0.087
Identities = 17/83 (20%), Positives = 30/83 (36%), Gaps = 3/83 (3%)
Query: 181 QAVSNGMESPSFPIIEDLRPIEFGLNISWK--SDVNSRQDNFEVIYNRNDTITEDPITVV 238
++ + P P +RP+ + +SW + N + + Y I V
Sbjct: 19 ESDLDETRVPEVPSSLHVRPLVTSIVVSWTPPENQNIVVRGYAIGYGIGSP-HAQTIKVD 77
Query: 239 TTDSKLLLENLYPGAGYSIQVFA 261
+ENL P + Y I + A
Sbjct: 78 YKQRYYTIENLDPSSHYVITLKA 100
Score = 33.2 bits (76), Expect = 0.15
Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 14/83 (16%)
Query: 370 PNPATYVAALVDASNVTLEFPRPE---GRIEYYLVTWRGIGPEATSTELFTKNVTNDPED 426
P + + +++ + + PE + Y + + P A + ++
Sbjct: 28 PEVPSSLHVRPLVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKV-DYKQR----- 81
Query: 427 KDKHVHILIDQLTPGVKYQFTIR 449
+ I+ L P Y T++
Sbjct: 82 -----YYTIENLDPSSHYVITLK 99
Score = 29.3 bits (66), Expect = 2.6
Identities = 11/49 (22%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 138 DNGSKISY-VEIETLNGDSNQMFVD--KTEYVLESLLPGRKYSINVQAV 183
N Y + + + + VD + Y +E+L P Y I ++A
Sbjct: 53 QNIVVRGYAIGYGIGSPHAQTIKVDYKQRYYTIENLDPSSHYVITLKAF 101
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 40.6 bits (95), Expect = 0.001
Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 8/71 (11%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEPV---GSIFTEYSIRYRTEEDKTWVR----LPNVGTS 331
P P+ +E SS A + ++ EP G +Y +R ++ W
Sbjct: 114 PSSPSIDQVEPYSSTAQV-QFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASME 172
Query: 332 LEAEVTDMVPG 342
+ + P
Sbjct: 173 GIVTIVGLKPE 183
Score = 36.7 bits (85), Expect = 0.023
Identities = 8/70 (11%), Positives = 25/70 (35%), Gaps = 11/70 (15%)
Query: 568 TEITDTSVSLTWDSPRGEYNA----FEVQY-------LNTEGFLIQNLTLHTSIVIGDLK 616
E ++ + +D P ++ ++ +++ + + ++ + I LK
Sbjct: 122 VEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGLK 181
Query: 617 PHRNYTFTVI 626
P Y +
Sbjct: 182 PETTYAVRLA 191
Score = 35.2 bits (81), Expect = 0.081
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 12/89 (13%)
Query: 370 PNPATYVAALVDASNVTLEF--PRPEGR--IEYYLVTWRGIGPEATSTELFTKNVTNDPE 425
P+ + +S ++F P G I Y WR +G E ++ + +
Sbjct: 114 PSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYD------AK 167
Query: 426 DKDKHVHILIDQLTPGVKYQFTIRTVSYN 454
+ + I L P Y R + N
Sbjct: 168 EASMEGIVTIVGLKPETTYAV--RLAALN 194
Score = 32.5 bits (74), Expect = 0.51
Identities = 12/91 (13%), Positives = 31/91 (34%), Gaps = 9/91 (9%)
Query: 188 ESPSFPIIEDLRPIEFGLNISWK---SDVNSRQDNFEVIYNRND----TITEDPITVVTT 240
++PS P I+ + P + + + ++ + +
Sbjct: 112 DTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASM 171
Query: 241 DSKLLLENLYPGAGYSIQVFAI-SHGLRSEP 270
+ + + L P Y++++ A+ GL E
Sbjct: 172 EGIVTIVGLKPETTYAVRLAALNGKGL-GEI 201
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 38.4 bits (89), Expect = 0.002
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 13/97 (13%)
Query: 567 ATEITDTSVSLTWDSPRGEYNAFEVQYL----------NTEGFLIQNLTLHTSIVIGDLK 616
++T S+ L WD + E + + + T V+ L+
Sbjct: 24 VGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATRHVVEGLE 83
Query: 617 PHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESLP 653
P Y F + V S + PV ++ T ES P
Sbjct: 84 PRTLYKFRLKVTSPSGEY---EYSPVVSVATTRESGP 117
Score = 38.0 bits (88), Expect = 0.003
Identities = 9/82 (10%), Positives = 25/82 (30%), Gaps = 8/82 (9%)
Query: 279 PKPPTNLTLEKTSSNAVLVKWKEP-------VGSIFTEYSIRYRTEEDKTWVRLPNVGTS 331
P + K + +++ + W + +SI + ++ + G +
Sbjct: 16 LSKPHPPVVGKVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYT-GYA 74
Query: 332 LEAEVTDMVPGEKCMIQVNSVS 353
V + P ++ S
Sbjct: 75 TRHVVEGLEPRTLYKFRLKVTS 96
Score = 29.5 bits (66), Expect = 2.5
Identities = 8/65 (12%), Positives = 17/65 (26%), Gaps = 7/65 (10%)
Query: 482 STDSVTLRYTPQNSNHFD-------FYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKL 534
+ S+ L + + + +P + + L P L
Sbjct: 28 THHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATRHVVEGLEPRTL 87
Query: 535 YNFTV 539
Y F +
Sbjct: 88 YKFRL 92
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 38.8 bits (89), Expect = 0.009
Identities = 31/281 (11%), Positives = 87/281 (30%), Gaps = 40/281 (14%)
Query: 201 IEFGLNIS----WKSDVNSRQDNFEVIYNRNDTI----TEDPITVVTTDSKLLLENL-YP 251
+ G I+ K + + ++++ + + ++ T +S + L +L +
Sbjct: 12 VHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHT 71
Query: 252 GAGYSIQVFAISHGLRSEPHDYFQAVYPKPPTNLTLE-KTSSNAVLVKWKEPV-GSIFTE 309
A S + + + + P P NL+ ++++++ +W+ + T
Sbjct: 72 QAFLSCSLNWGNSLQILDQVELRAGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTS 131
Query: 310 YSIRYRTEEDKTWVRLPNVGTSLEAE--------VTDMVPGEKCMIQV---NSVSYSVES 358
++++ + ++ + + ++ + I V N++ S+
Sbjct: 132 FTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSP 191
Query: 359 AHPLQINHTISPNPATYVAALV---------DASNVTLEFPRPEGRIE-YYLVTWRGIGP 408
L + P ++ E +P I + +
Sbjct: 192 QLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRG 251
Query: 409 EATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKYQFTIR 449
EA+ + + + + L P Y IR
Sbjct: 252 EASWALVGPLPLEA--------LQYELCGLLPATAYTLQIR 284
Score = 37.6 bits (86), Expect = 0.019
Identities = 23/170 (13%), Positives = 42/170 (24%), Gaps = 27/170 (15%)
Query: 507 EPDIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTV-ADGVLSTP---IQRHDRLYPEPI 562
I + + +L + V A G +P + D + EP
Sbjct: 147 GDSILDCVPKDGQSHCSIPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPP 206
Query: 563 TRINATEI------TDTSVSLTWDSPRGEYNA---FEVQYLNTEGFLIQNLTLH-----T 608
+ L+W+ + + E+++ G L
Sbjct: 207 MLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEAL 266
Query: 609 SIVIGDLKPHRNYTFTVIVR----SGTESSVLRRSLPVSAIFQTHESLPG 654
+ L P YT + G S S + +T E
Sbjct: 267 QYELCGLLPATAYTLQIRCIRWPLPGHWSD---WSPSLE--LRTTERAAA 311
Score = 33.8 bits (76), Expect = 0.30
Identities = 35/227 (15%), Positives = 65/227 (28%), Gaps = 58/227 (25%)
Query: 76 SGPEPLPVLDLTAVMDDKTGDLFISWKPD-----NASYQDMYKISIKSILLEEEHQKQFL 130
+G P +L+ +M+ T L W+P S+ S + + +
Sbjct: 95 AGYPPAIPHNLSCLMNLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDS----- 149
Query: 131 MGFLGDCDNGSKISYVEIETLNGDSNQMFVDKTEYVLESLLPGRKYSINVQAVSNGMESP 190
++ +G S+ + LL + I VQA + S
Sbjct: 150 --------------ILDCVPKDGQSHCSIP------RKHLLLYQNMGIWVQAENALGTSM 189
Query: 191 SFPIIEDLRPI---------------------EFGLNISWKSDVNSRQDN--FEVIY--N 225
S + D + L +SW+ N E+ +
Sbjct: 190 SPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQLSWEPWQPGLHINQKCELRHKPQ 249
Query: 226 RNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAI---SHGLRSE 269
R + + + L L P Y++Q+ I G S+
Sbjct: 250 RGEASWALVGPLPLEALQYELCGLLPATAYTLQIRCIRWPLPGHWSD 296
>3cxe_C Granulocyte-macrophage colony-stimulating factor subunit alpha;
GM-CSF, receptor complex, dodecamer, disease mutation,
glyco membrane; HET: NAG BMA; 3.30A {Homo sapiens}
Length = 120
Score = 36.2 bits (83), Expect = 0.012
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 281 PPTNLTLEKTSSNAVLVKWKEPVGSIFT-----EYSIRYRTEEDKTWVRLPNVGTSLEAE 335
PP+N+T+ +++ LV+WK+P +Y + + + + S + E
Sbjct: 20 PPSNVTVRCNTTH-CLVRWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDLE 78
Query: 336 ----VTDMVPGEKCMIQV 349
P K +++
Sbjct: 79 NRYNFPSSEPRAKHSVKI 96
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 34.8 bits (80), Expect = 0.042
Identities = 8/66 (12%), Positives = 20/66 (30%), Gaps = 10/66 (15%)
Query: 570 ITDTSVSLTWDSP-----RGEYNAFEVQYLNTEGFLIQNLTLH-----TSIVIGDLKPHR 619
+ +V + W P GE + + ++ + + L + I +
Sbjct: 31 ESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQNGSRARISVQVHNA 90
Query: 620 NYTFTV 625
T +
Sbjct: 91 TCTVRI 96
Score = 33.6 bits (77), Expect = 0.088
Identities = 9/75 (12%), Positives = 25/75 (33%), Gaps = 9/75 (12%)
Query: 205 LNISWK----SDVNSRQDNFEVIYNRNDTITEDPI--TVVTTDSKLLLENLYPGAGYSIQ 258
++I W + + + + + V S+ + A +++
Sbjct: 36 VDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQNGSRARISVQVHNATCTVR 95
Query: 259 VFAIS---HGLRSEP 270
+ A++ G S+P
Sbjct: 96 IAAVTRGGVGPFSDP 110
Score = 33.6 bits (77), Expect = 0.10
Identities = 12/104 (11%), Positives = 34/104 (32%), Gaps = 27/104 (25%)
Query: 82 PVLDLTAVMDDKTGDLFISWKPDNASYQDMYKISIKSILLEEEHQKQFLMGFLGDCDNGS 141
L++T +++ + ++ I W + Q L+G+
Sbjct: 21 APLNVTVFLNESSDNVDIRWMK-----------------PPTKQQDGELVGY-------- 55
Query: 142 KISYVEIETLNGDS--NQMFVDKTEYVLESLLPGRKYSINVQAV 183
+IS+V ++ + + + + ++ + AV
Sbjct: 56 RISHVWQSAGISKELLEEVGQNGSRARISVQVHNATCTVRIAAV 99
Score = 30.9 bits (70), Expect = 0.87
Identities = 10/86 (11%), Positives = 25/86 (29%), Gaps = 10/86 (11%)
Query: 477 VNNQQSTDSVTLRYTP---QNSN----HFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNL 529
V +S+D+V +R+ + + + S + + + +
Sbjct: 27 VFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQNGSRARISVQ 86
Query: 530 TPGKLYNFTV--WTVA-DGVLSTPIQ 552
+ T G S P++
Sbjct: 87 VHNATCTVRIAAVTRGGVGPFSDPVK 112
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.5 bits (78), Expect = 0.085
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 69 LETRQNLSGPEPLPVLDLTAVMD 91
L+ L + P L + A M+
Sbjct: 25 LQASLKLYADDSAPALAIKATME 47
Score = 32.2 bits (72), Expect = 0.47
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 5/30 (16%)
Query: 343 EKCMIQ--VNSVS-YSVESAHP-LQINHTI 368
EK ++ S+ Y+ +SA P L I T+
Sbjct: 18 EKQALKKLQASLKLYADDSA-PALAIKATM 46
Score = 29.9 bits (66), Expect = 2.8
Identities = 6/16 (37%), Positives = 8/16 (50%), Gaps = 3/16 (18%)
Query: 556 RLY-PE--PITRINAT 568
+LY + P I AT
Sbjct: 30 KLYADDSAPALAIKAT 45
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 34.5 bits (78), Expect = 0.11
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 6/105 (5%)
Query: 548 STPIQRHDRLYPEPITRINATEITDTSVSLTWDSPRGEYNAFEVQYLNTEG-FLIQNLTL 606
T + T TS+ ++WD+ + + + Y T G +Q T+
Sbjct: 93 RVEKDGGSGGVSSVPTNLEVVAATPTSLLISWDASYYGVSYYRITYGETGGNSPVQEFTV 152
Query: 607 H---TSIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQT 648
++ I LKP +YT TV S S P+S ++T
Sbjct: 153 PYSSSTATISGLKPGVDYTITVYAYSDYYGS--HHYSPISINYRT 195
Score = 30.3 bits (67), Expect = 2.7
Identities = 23/127 (18%), Positives = 37/127 (29%), Gaps = 7/127 (5%)
Query: 430 HVHILIDQLTPGVKYQFTIRTVSYNLESGVTSLSARTMPLIESEVLVVNNQQSTD----S 485
H + T + I N + V N + S
Sbjct: 60 HGQAVSLLKTFQNTVELIIVREVGNGAKQEIRVRVEKDGGSGGVSSVPTNLEVVAATPTS 119
Query: 486 VTLRYTPQNSNHFDFYRFTLSEP--DIPVIEKAANDTDRKVTFNNLTPGKLYNFTVWTVA 543
+ + + + +YR T E + PV E + T + L PG Y TV+ +
Sbjct: 120 LLISWDA-SYYGVSYYRITYGETGGNSPVQEFTVPYSSSTATISGLKPGVDYTITVYAYS 178
Query: 544 DGVLSTP 550
D S
Sbjct: 179 DYYGSHH 185
>3mpc_A FN3-like protein; fibronectin, FN(III), unknown function; 1.60A
{Clostridium thermocellum}
Length = 103
Score = 32.8 bits (75), Expect = 0.13
Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 9/91 (9%)
Query: 559 PEPITRINAT-EITDTSVSLTWDSPRGEYNAFEVQYLNTEGF---LIQNLTLHTSIVIGD 614
P T ++A + + + +LTW++ G N++ V+ G I T+
Sbjct: 5 PAFPTGLSAVLDSSGNTANLTWNAAPGA-NSYNVKRSTKSGGPYTTIATNITSTNYTDTG 63
Query: 615 LKPHRNYTFTVI-VRSGTESSVLRRSLPVSA 644
+ Y + V V +G E+ S
Sbjct: 64 VATGTKYYYVVSAVSNGVETL---NSAEAIL 91
Score = 30.1 bits (68), Expect = 1.3
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 3/77 (3%)
Query: 475 LVVNNQQSTDSVTLRYTP-QNSNHFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGK 533
L S ++ L + +N ++ R T S I A N T T + G
Sbjct: 11 LSAVLDSSGNTANLTWNAAPGANSYNVKRSTKSGGPYTTI--ATNITSTNYTDTGVATGT 68
Query: 534 LYNFTVWTVADGVLSTP 550
Y + V V++GV +
Sbjct: 69 KYYYVVSAVSNGVETLN 85
Score = 28.9 bits (65), Expect = 3.0
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 438 LTPGVKYQFTIRTVSYNLESGVTSLSARTMPLIESEV 474
+ G KY + + VS +E+ ++ + P +E
Sbjct: 64 VATGTKYYYVVSAVSNGVETLNSAEAILQYPKLEHHH 100
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 34.4 bits (78), Expect = 0.14
Identities = 19/193 (9%), Positives = 52/193 (26%), Gaps = 29/193 (15%)
Query: 279 PKPPTNLTLE-KTSSNAVLVKWKEPV-GSIFTEYSIRYRTEEDKTWVRLPNV-------- 328
P P+NL+ ++N+++ +W+ + T + ++ + +
Sbjct: 5 PASPSNLSCLMHLTTNSLVCQWEPGPETHLPTSFILKSFRSRADCQYQGDTIPDCVAKKR 64
Query: 329 GTSLEAEVTDMVPGEKCMIQV---NSVSYSVESAHPLQINHTISPNPATYVAALVDASNV 385
+ +++ + I V N + S L + P +
Sbjct: 65 QNNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQ-------AL 117
Query: 386 TLEFPRPEGRIEYYLVTWRGIGPEATSTELFT--KNVTNDPEDKDKHVHILIDQ------ 437
+ + ++W+ P + + H+ +
Sbjct: 118 DIGPDVVSHQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELC 177
Query: 438 -LTPGVKYQFTIR 449
L Y +R
Sbjct: 178 GLHQAPVYTLQMR 190
Score = 33.3 bits (75), Expect = 0.29
Identities = 14/124 (11%), Positives = 30/124 (24%), Gaps = 18/124 (14%)
Query: 520 TDRKVTFNNLTPGKLYNFTVW--TVADGVLSTPIQRH--DRLYPEP------ITRINATE 569
+ + NL + V + S + D + EP +
Sbjct: 66 NNCSIPRKNLLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVVS 125
Query: 570 ITDTSVSLTWDSPRGEYNA---FEVQYLNTEG-----FLIQNLTLHTSIVIGDLKPHRNY 621
+ L+W + E++Y + + + L Y
Sbjct: 126 HQPGCLWLSWKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVY 185
Query: 622 TFTV 625
T +
Sbjct: 186 TLQM 189
Score = 29.4 bits (65), Expect = 6.3
Identities = 22/128 (17%), Positives = 37/128 (28%), Gaps = 28/128 (21%)
Query: 170 LLPGRKYSINVQAVSNGMESPSFPIIEDL---------------------RPIEFGLNIS 208
LL + +I VQA + S S + D L +S
Sbjct: 75 LLLYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLS 134
Query: 209 WK--SDVNSRQDNFEVIY--NRNDTITEDPITVVTTDSKLLLENLYPGAGYSIQVFAI-- 262
WK + E+ Y + ++ + L L+ Y++Q+ I
Sbjct: 135 WKPWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRS 194
Query: 263 -SHGLRSE 269
G S
Sbjct: 195 SLPGFWSP 202
>3elq_A Arylsulfate sulfotransferase; beta propeller, protein-substrate
complex, periplasm, transesterification, phenol,
bacteria; 2.00A {Escherichia coli} PDB: 3ett_A* 3ets_A*
Length = 571
Score = 35.1 bits (79), Expect = 0.15
Identities = 35/279 (12%), Positives = 62/279 (22%), Gaps = 13/279 (4%)
Query: 473 EVLVVNNQQSTDSVTLRYTPQNSNHFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPG 532
V N + + +T N++ R VI+ A DR N T
Sbjct: 82 TVEWKENGKVMKDDYVVHTSAIVNNYMDNRSISDLQQTKVIKVAPGFEDRLYLVNTHTFT 141
Query: 533 KLYNFTVWTVADGVLSTPIQRHDRLYPEPITRINATEITDTSVSLTWDSPRGEYNAFEVQ 592
+ W + + P T I DT W + + +
Sbjct: 142 AQGSDLHWHGEKDKNAGILDAGPATGALPFDIAPFTFIVDTEGEYRWWLDQDTFYDGRDR 201
Query: 593 YLNTEGFLIQNLTLHTSIVIGDLKPHRNYTFTVIVRSGTESSVLRRSLPVSAIFQTHESL 652
+N G+L+ + LP THES+
Sbjct: 202 DINKRGYLM------GIRETPRGTFTAVQGQHWYEFDMMGQVLEDHKLPRGFADATHESI 255
Query: 653 PGKMDRTIVDTWHFVRFFQAEKFHP------IDVQP-GDITFEWSLPGSEQNGVIRKFTI 705
++ ++V G + W L
Sbjct: 256 ETPNGTVLLRVGKSNYRRDDGVHVTTIRDHILEVDKSGRVVDVWDLTKILDPKRDALLGA 315
Query: 706 SYAQEAACNHNQRLHAKFQLPRVNSKKLKGWPGTLRTDW 744
A N + + ++ +W
Sbjct: 316 LDAGAVCVNVDLAHAGQQAKLEPDTPFGDALGVGPGRNW 354
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 34.3 bits (78), Expect = 0.17
Identities = 13/115 (11%), Positives = 30/115 (26%), Gaps = 17/115 (14%)
Query: 170 LLPGRKYSINVQAVSNGMESPSFPIIEDLRPI-------------EFGLNISWKSDVNSR 216
+ V A S I ++ + + + W +
Sbjct: 91 TSSFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETP 150
Query: 217 QDN---FEVIYNRNDTITEDP-ITVVTTDSKLLLENLYPGAGYSIQVFAISHGLR 267
+ +EV + + ++ ++ +L NL Y+ V A
Sbjct: 151 MTSHIRYEVDVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRYTFAVRARMAEPS 205
Score = 31.2 bits (70), Expect = 1.6
Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 14/111 (12%)
Query: 527 NNLTPGKLYNFTVWTVADGVLSTPIQRHDRL----YPEPITRINATEITDTSVSLTWDSP 582
+ + V + + + + P + A E V L W P
Sbjct: 89 ADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGH--VVLRWLPP 146
Query: 583 RGEYNAFEVQY--------LNTEGFLIQNLTLHTSIVIGDLKPHRNYTFTV 625
++Y ++ L T V+ +L+ YTF V
Sbjct: 147 PETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRTECVLSNLRGRTRYTFAV 197
>3s9d_B Interferon alpha/beta receptor 2; human, type I interferons, IFNA2,
ifnar2, SUB-complex of the interferon signaling complex;
2.00A {Homo sapiens} PDB: 1n6u_A 1n6v_A 2hym_A 2ksx_B
2kz1_B 2lag_B 3se4_C* 3se3_C* 3s8w_A*
Length = 199
Score = 33.2 bits (75), Expect = 0.30
Identities = 28/174 (16%), Positives = 57/174 (32%), Gaps = 14/174 (8%)
Query: 282 PTNLTLEKTSSNAVLV-KWKEPVGSI-FTEYSIRYRT-EEDKTWVRLPNVG--TSLEAEV 336
P + T + + N + W+ SI T Y++ Y + + + N T ++
Sbjct: 3 PESCTFKISLRNFRSILSWELKNHSIVPTHYTLLYTIMSKPEDLKVVKNCANTTRSFCDL 62
Query: 337 TD--MVPGEKCMIQVNSV----SYSVESAHPLQINHTISPNPATYVAALVDASNVTLEFP 390
TD E + + + S + P + + NV ++FP
Sbjct: 63 TDEWRSTHEAYVTVLEGFSGNTTLFSCSHNFWLAIDMSFEPPEFEIVGFTNHINVMVKFP 122
Query: 391 RPEGRIEYYLVTWRGIGPEATSTELFTKNVTNDPEDKDKHVHILIDQLTPGVKY 444
+ ++ E S + K+ + + +ID+L P Y
Sbjct: 123 SIVEEELQFDLSLVI---EEQSEGIVKKHKPEIKGNMSGNFTYIIDKLIPNTNY 173
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding,
transferase-transfera inhibitor complex; HET: 046; 1.34A
{} PDB: 3krr_A* 3lpb_A* 4aqc_A* 3q32_A* 3rvg_A* 3tjc_A*
3tjd_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A*
3iok_A* 3io7_A* 3kck_A* 3jy9_A*
Length = 295
Score = 31.9 bits (73), Expect = 1.3
Identities = 11/58 (18%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 1106 RILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNENQLPLREI 1163
IL+S+ H ++V G+ Y + + ++ E Y+ + L L+ ++ ++ ++
Sbjct: 63 EILKSLQHDNIVKYKGVCYSAGRRNLKLI-ME--YLP-YGSLRDYLQKHKERIDHIKL 116
>3b4n_A Endo-pectate lyase; pectin, galacturonic acid, right-handed
parallel beta helix fold; 1.45A {Erwinia chrysanthemi}
PDB: 3b8y_A* 3b90_A
Length = 344
Score = 31.4 bits (70), Expect = 1.7
Identities = 17/92 (18%), Positives = 28/92 (30%), Gaps = 3/92 (3%)
Query: 480 QQSTDSVTLRYTPQNS--NHFDFYRFTLSEPDIPVIEKAANDTDRKVTFNNLTPGKLYNF 537
Q +D L ++ S + YR T S PD+ + R + G Y +
Sbjct: 27 SQKSDVNYLGWSTDESKVARQEVYRGTTSNPDLRERIAVLDAETRTFKDADTNSGLNYWY 86
Query: 538 TVWTV-ADGVLSTPIQRHDRLYPEPITRINAT 568
V V + P+ A+
Sbjct: 87 WVDVVSENQAQVVSNAVTTAPNAGPLRAAKAS 118
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III
module, structural protein; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 98
Score = 29.4 bits (65), Expect = 1.8
Identities = 14/76 (18%), Positives = 28/76 (36%), Gaps = 1/76 (1%)
Query: 278 YPKPPTNLTLEKTSSNAVLVKWKEPVGSIFTEYSIRYRTEEDKT-WVRLPNVGTSLEAEV 336
+T + N+ ++W P S ++Y +R+R + W G +
Sbjct: 6 SGPVEVFITETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNSYTI 65
Query: 337 TDMVPGEKCMIQVNSV 352
+ PG Q+ S+
Sbjct: 66 KGLKPGVVYEGQLISI 81
Score = 27.8 bits (61), Expect = 7.1
Identities = 18/101 (17%), Positives = 30/101 (29%), Gaps = 12/101 (11%)
Query: 369 SPNPATYVAALVDAS--NVTLEFPRPEG-RIEYYLVTWRGIGPEATSTELFTKNVTNDPE 425
S P + + +++ P+ I Y++ WR E N
Sbjct: 5 SSGPVEVFITETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHLNS-- 62
Query: 426 DKDKHVHILIDQLTPGVKYQFTIRTVSYNLESGVTSLSART 466
I L PGV Y+ + ++ VT T
Sbjct: 63 -------YTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTT 96
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein
kinase, proto-oncogene, phosphoprotein, disease mutation,
SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Length = 326
Score = 31.2 bits (71), Expect = 1.8
Identities = 11/58 (18%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Query: 1106 RILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNENQLPLREI 1163
IL+S+ H ++V G+ Y + + ++ E Y+ + L L+ ++ ++ ++
Sbjct: 94 EILKSLQHDNIVKYKGVCYSAGRRNLKLI-ME--YLP-YGSLRDYLQKHKERIDHIKL 147
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN
inhibitor, ATP-binding mutation, membrane,
nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A
{Homo sapiens} PDB: 3lxk_A* 3pjc_A* 1yvj_A*
Length = 327
Score = 31.2 bits (71), Expect = 2.1
Identities = 12/58 (20%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Query: 1106 RILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNENQLPLREI 1163
+IL++++ +V G+ Y ++ + +V E Y+ CL L+ + +L +
Sbjct: 76 QILKALHSDFIVKYRGVSYGPGRQSLRLV-ME--YLP-SGCLRDFLQRHRARLDASRL 129
>2csp_A RIM-BP2, RIM binding protein 2; FN3 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 29.0 bits (64), Expect = 4.3
Identities = 24/111 (21%), Positives = 41/111 (36%), Gaps = 13/111 (11%)
Query: 275 QAVYPKPPTNLTLEKTSSNA-VLVKWKEPV--------GSIFTEYSIRYRTEEDKTWVRL 325
A P PP ++T++ + A + V W+ PV G+ T Y + Y + V
Sbjct: 14 PAGPPAPPQDVTVQAGVTPATIRVSWRPPVLTPTGLSNGANVTGYGV-YAKGQRVAEVIF 72
Query: 326 PNVGTSLEAEVTDMVPGEKCMIQVNSVSYSVESAH--PLQINHTISPNPAT 374
P S E+ + E + V ++S ES + + P
Sbjct: 73 PT-ADSTAVELVRLRSLEAKGVTVRTLSAQGESVDSAVAAVPPELLVPPTP 122
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase
inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB:
4e4l_A* 4e4n_A* 3eyg_A* 3eyh_A*
Length = 302
Score = 30.0 bits (68), Expect = 4.5
Identities = 12/58 (20%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 1106 RILQSINHSDVVDIFGIVYHMRKERVWMVQTEQQYICIHQCLLAVLEGNENQLPLREI 1163
IL+++ H ++V GI + ++ E ++ L L N+N++ L++
Sbjct: 75 EILRNLYHENIVKYKGICTEDGGNGIKLI-ME--FLP-SGSLKEYLPKNKNKINLKQQ 128
>1z3i_X Similar to RAD54-like; recombination ATPase helicase,
recombination-DNA binding COM; 3.00A {Danio rerio} SCOP:
c.37.1.19 c.37.1.19
Length = 644
Score = 30.4 bits (69), Expect = 4.6
Identities = 16/60 (26%), Positives = 21/60 (35%), Gaps = 8/60 (13%)
Query: 1052 CNRPKNRFTNILPYDHSRFKLQPVDDEEGSDYINANYVPGHNSPRRSGTLIALDRILQSI 1111
CN P L Y+ + D D NY P+ SG ++ LD IL
Sbjct: 360 CNHPA------LIYEKCLTGEEGFDGAL--DLFPQNYSTKAVEPQLSGKMLVLDYILAMT 411
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 29.3 bits (65), Expect = 7.9
Identities = 9/60 (15%), Positives = 21/60 (35%)
Query: 92 DKTGDLFISWKPDNASYQDMYKISIKSILLEEEHQKQFLMGFLGDCDNGSKISYVEIETL 151
D + + + +DM ++ SI + + + + D + KI E+
Sbjct: 206 DVSRTGALEGPEVDGFVKDMMELVRPSISGGDLDKFRECLLTHCDMNKDGKIQKSELALC 265
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.400
Gapped
Lambda K H
0.267 0.0731 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,893,425
Number of extensions: 1073434
Number of successful extensions: 3622
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2993
Number of HSP's successfully gapped: 782
Length of query: 1189
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1085
Effective length of database: 3,798,009
Effective search space: 4120839765
Effective search space used: 4120839765
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.0 bits)