RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4956
(361 letters)
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 141 bits (356), Expect = 1e-39
Identities = 65/277 (23%), Positives = 102/277 (36%), Gaps = 14/277 (5%)
Query: 83 TASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTEN 142
D PT + V S A + W+PP K LK + +
Sbjct: 8 GGGGIPVIDGPTQILVRDVSDTVAFVEWTPP-RAKVDFILLKYGLVGGEGGKTTFRLQPP 66
Query: 143 PPAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVL 202
YS++ L PG Y+V + +V + ES A +S FTT+ + P V R T+L +
Sbjct: 67 LSQ-YSVQALRPGSRYEVSISAVRGTNESDA-SSTQFTTEIDAPKNLRVGSRTATSLDLE 124
Query: 203 WQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTVS 262
W + YKV + + +G P + LVPG Y + + V
Sbjct: 125 WDN--SEAEAQEYKVVYSTLAGEQYHEVLVPKGIGP-TTKTTLTDLVPGTEYGVGISAVM 181
Query: 263 EDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKGFSEFDKYQVSINVRRPG 322
+ S P T RT P + + S+ ++W G D Y+++
Sbjct: 182 NSKQSIPATMNARTELDSPRDLMVT--ASSETSISLIWTKASG--PIDHYRIT--FTPSS 235
Query: 323 ASSTPITKSRDEPTQCDMSEGLEPGRTYQVLVKTVSG 359
S+ +T RD + LEPG Y + + G
Sbjct: 236 GISSEVTVPRDRTSYTL--TDLEPGAEYIISITAERG 270
Score = 107 bits (270), Expect = 3e-27
Identities = 54/257 (21%), Positives = 97/257 (37%), Gaps = 14/257 (5%)
Query: 22 SSDNSTYRLDYIPAHGHPPPNTTYVSRDIKDNIEFSEGLPGTKYDFYLY-YTNSTVHDWL 80
+ L Y G T + PG++Y+ + + D
Sbjct: 39 RAKVDFILLKYGLVGGEGGKTTFRLQPP-LSQYSVQALRPGSRYEVSISAVRGTNESDAS 97
Query: 81 TWTASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLS-EKTPPRIIGF 139
+ TT D P NL V R+ + + W + +K+ +L+ E+ ++
Sbjct: 98 S--TQFTTEIDAPKNLRVGSRTATSLDLEWDNS-EAEAQEYKVVYSTLAGEQYHEVLVPK 154
Query: 140 TENPPAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTL 199
P +L DL PG Y V + +V +SK+S+ + N T+ ++P +V +ET++
Sbjct: 155 GIGPTTKTTLTDLVPGTEYGVGISAVMNSKQSIP-ATMNARTELDSPRDLMVTASSETSI 213
Query: 200 LVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQ 259
++W + HY+++ P S + V P L PG Y IS+
Sbjct: 214 SLIWTK--ASGPIDHYRITFTPSSGISSEVTV-----PRDRTSYTLTDLEPGAEYIISIT 266
Query: 260 TVSEDEISTPTTAQYRT 276
+ S +T T
Sbjct: 267 AERGRQQSLESTVDAFT 283
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 136 bits (343), Expect = 5e-37
Identities = 57/273 (20%), Positives = 96/273 (35%), Gaps = 12/273 (4%)
Query: 89 PPDPPTNLSVNVRSGKTA-QIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAGY 147
P PPTNL + + W + +G+++ + + + +
Sbjct: 1 PLSPPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSC 60
Query: 148 SLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPSY 207
+ +L+PG Y V +++V D KESV + P T+ V W P
Sbjct: 61 TFDNLSPGLEYNVSVYTVKDDKESVPISDT-IIPAVPPPTDLRFTNIGPDTMRVTWAPPP 119
Query: 208 PASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTVSEDEIS 267
+ T++ V P E V + P L+PG Y +SV +V E S
Sbjct: 120 SIDL-TNFLVRYSPVKNEEDVAELSI---SPSDNAVVLTNLLPGTEYVVSVSSVYEQHES 175
Query: 268 TPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTP 327
TP + +T P + IT+NS V W P+ Y++ +
Sbjct: 176 TPLRGRQKTGLDSPTGIDFS--DITANSFTVHWIAPRA--TITGYRIRHHPEHFSGRPRE 231
Query: 328 ITKSRDEPTQCDMSEGLEPGRTYQVLVKTVSGK 360
+ L PG Y V + ++G+
Sbjct: 232 DRVPHSR-NSITL-TNLTPGTEYVVSIVALNGR 262
Score = 119 bits (301), Expect = 5e-31
Identities = 68/340 (20%), Positives = 125/340 (36%), Gaps = 16/340 (4%)
Query: 22 SSDNSTYRLDYIPAHGHPPPNTTYVSRDIKDNIEFSEGLPGTKYDFYLYYTNSTVHDWLT 81
+ D + YR+ P +G + V + + F PG +Y+ +Y + +
Sbjct: 28 TPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDD-KESVP 86
Query: 82 WTASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTE 141
+ +I PPT+L T ++ W+PP S + F ++ + + + +
Sbjct: 87 ISDTIIPAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISP 146
Query: 142 NPPAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLV 201
+ A L +L PG Y V + SVY+ ES T ++P + V
Sbjct: 147 SDNA-VVLTNLLPGTEYVVSVSSVYEQHESTPLRG-RQKTGLDSPTGIDFSDITANSFTV 204
Query: 202 LWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTV 261
W P + T Y++ P P L PG Y +S+ +
Sbjct: 205 HWIA--PRATITGYRIRHHPEHFSGRPREDRV---PHSRNSITLTNLTPGTEYVVSIVAL 259
Query: 262 SEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKGFSEFDKYQVSINVRRP 321
+ E S Q T+ P + T SL + W+ P Y+++
Sbjct: 260 NGREESPLLIGQQSTVSDVPRDLEVV--AATPTSLLISWDAPAV--TVRYYRITY---GE 312
Query: 322 GASSTPITKSRDEPTQCDMS-EGLEPGRTYQVLVKTVSGK 360
++P+ + ++ + GL+PG Y + V V+G+
Sbjct: 313 TGGNSPVQEFTVPGSKSTATISGLKPGVDYTITVYAVTGR 352
Score = 91.8 bits (228), Expect = 6e-21
Identities = 53/253 (20%), Positives = 92/253 (36%), Gaps = 14/253 (5%)
Query: 28 YRLDYIPAHGHPPPNTTYVSRDIKDNIEFSEGLPGTKYDFYLYYTNSTVHDWLTWTASIT 87
+ + Y P +S + + + LPGT+Y + H+
Sbjct: 126 FLVRYSPVKNEEDVAELSISPS-DNAVVLTNLLPGTEYVVSVSSVYE-QHESTPLRGRQK 183
Query: 88 TPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAGY 147
T D PT + + + + + W P +G++++ PR + +
Sbjct: 184 TGLDSPTGIDFSDITANSFTVHWIAP-RATITGYRIRHHPEHFSGRPREDRVPHSRNS-I 241
Query: 148 SLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPSY 207
+L +LTPG Y V + ++ +ES +T + P V T+LL+ W
Sbjct: 242 TLTNLTPGTEYVVSIVALNGREESPL-LIGQQSTVSDVPRDLEVVAATPTSLLISWDA-- 298
Query: 208 PASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTVSED--- 264
PA +Y+++ V P + A GL PG Y I+V V+
Sbjct: 299 PAVTVRYYRITYGETGGNSPVQEFTV---PGSKSTATISGLKPGVDYTITVYAVTGRGDS 355
Query: 265 -EISTPTTAQYRT 276
S P + YRT
Sbjct: 356 PASSKPISINYRT 368
Score = 33.7 bits (77), Expect = 0.093
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 2/73 (2%)
Query: 289 ASITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGR 348
A+ + L V WE + Y+++ ++ + + C + L PG
Sbjct: 12 ANPDTGVLTVSWERSTT-PDITGYRITTTPTNGQQGNSLEEVVHADQSSCTF-DNLSPGL 69
Query: 349 TYQVLVKTVSGKP 361
Y V V TV
Sbjct: 70 EYNVSVYTVKDDK 82
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 122 bits (309), Expect = 5e-32
Identities = 75/340 (22%), Positives = 132/340 (38%), Gaps = 15/340 (4%)
Query: 22 SSDNSTYRLDYIPAHGHPPPNTTYVSRDIKDNIEFSEGLPGTKYDFYLYYTNSTVHDWLT 81
+ D + YR+ P +G + V + + F PG +Y+ +Y +
Sbjct: 29 TPDITGYRITTTPTNGQQGNSLEEVVHADQSSCTFDNLSPGLEYNVSVYTVKDDKES-VP 87
Query: 82 WTASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTE 141
+ +I T+LS + + + W+P S G+++ V++ E P F +
Sbjct: 88 ISDTIIPEVPQLTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFED-FVD 146
Query: 142 NPPAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLV 201
+ Y++ L PG Y + + ++ + ES A T+ T P T+ V
Sbjct: 147 SSVGYYTVTGLEPGIDYDISVITLINGGES-APTTLTQQTAVPPPTDLRFTNIGPDTMRV 205
Query: 202 LWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTV 261
W P P+ T++ V P E V + P L+PG Y +SV +V
Sbjct: 206 TWAPP-PSIDLTNFLVRYSPVKNEEDVAELSI---SPSDNAVVLTNLLPGTEYVVSVSSV 261
Query: 262 SEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKGFSEFDKYQVSINVRRP 321
E STP + +T P + IT+NS V W P+ Y++ P
Sbjct: 262 YEQHESTPLRGRQKTGLDSPTGIDFS--DITANSFTVHWIAPRA--TITGYRIRH---HP 314
Query: 322 GASSTPITKSRDEPTQCDMS-EGLEPGRTYQVLVKTVSGK 360
S + R ++ ++ L PG Y V + ++G+
Sbjct: 315 EHFSGRPREDRVPHSRNSITLTNLTPGTEYVVSIVALNGR 354
Score = 121 bits (306), Expect = 9e-32
Identities = 53/274 (19%), Positives = 102/274 (37%), Gaps = 11/274 (4%)
Query: 89 PPDPPTNLSVNVRSGKTA-QIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAGY 147
P PPTNL + + W + +G+++ + + + +
Sbjct: 2 PLSPPTNLHLEANPDTGVLTVSWERSTTPDITGYRITTTPTNGQQGNSLEEVVHADQSSC 61
Query: 148 SLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPSY 207
+ +L+PG Y V +++V D KESV + + ++++ + W P
Sbjct: 62 TFDNLSPGLEYNVSVYTVKDDKESVPISDT-IIPEVPQLTDLSFVDITDSSIGLRWTPLN 120
Query: 208 PASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTVSEDEIS 267
++I Y++++ + GL PG Y+ISV T+ S
Sbjct: 121 SSTI-IGYRITVVAAGEGIPIFEDFV---DSSVGYYTVTGLEPGIDYDISVITLINGGES 176
Query: 268 TPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTP 327
PTT +T P + +I +++RV W PP + + V + +
Sbjct: 177 APTTLTQQTAVPPPTDLRFT--NIGPDTMRVTWAPPPS-IDLTNFLVRYSPVKNEEDVAE 233
Query: 328 ITKSRDEPTQCDMSEGLEPGRTYQVLVKTVSGKP 361
++ S + + L PG Y V V +V +
Sbjct: 234 LSISPSD-NAVVL-TNLLPGTEYVVSVSSVYEQH 265
Score = 108 bits (272), Expect = 7e-27
Identities = 54/255 (21%), Positives = 85/255 (33%), Gaps = 11/255 (4%)
Query: 28 YRLDYIPAHGHPPPNTTYVSRDIKDNIEFSEGLPGTKYDFYLY-YTNSTVHDWLTWTASI 86
YR+ + A P +V + PG YD + N T T
Sbjct: 127 YRITVVAAGEGIPIFEDFVDSS-VGYYTVTGLEPGIDYDISVITLINGGESAPTTLTQ-- 183
Query: 87 TTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAG 146
T PPT+L T ++ W+PP S + F ++ + + + + + A
Sbjct: 184 QTAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSISPSDNA- 242
Query: 147 YSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPS 206
L +L PG Y V + SVY+ ES R T ++P + V W
Sbjct: 243 VVLTNLLPGTEYVVSVSSVYEQHESTPLRGR-QKTGLDSPTGIDFSDITANSFTVHWIA- 300
Query: 207 YPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTVSEDEI 266
P + T Y++ P P L PG Y +S+ ++ E
Sbjct: 301 -PRATITGYRIRHHPEHFSGRPREDR---VPHSRNSITLTNLTPGTEYVVSIVALNGREE 356
Query: 267 STPTTAQYRTIPLRP 281
S Q T+
Sbjct: 357 SPLLIGQQSTVSAHH 371
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 120 bits (303), Expect = 6e-32
Identities = 54/275 (19%), Positives = 103/275 (37%), Gaps = 15/275 (5%)
Query: 87 TTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAG 146
PT+L + + W+PP + + +G++++V + P + I + +
Sbjct: 18 GPAIPAPTDLKFTQVTPTSLSAQWTPP-NVQLTGYRVRVTPKEKTGPMKEINLAPDSSS- 75
Query: 147 YSLKDLTPGGSYQVQLFSVYDSKESVAYTS-RNFTTKPNTPGKFIVWFRNETTLLVLWQP 205
+ L Y+V ++++ D+ S + P + V ETT+ + W+
Sbjct: 76 VVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARVTDATETTITISWRT 135
Query: 206 SYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTVSEDE 265
T ++V P + + + P GL PG Y I + T++++
Sbjct: 136 --KTETITGFQVDAVPANGQTPI----QRTIKPDVRSYTITGLQPGTDYKIYLYTLNDNA 189
Query: 266 ISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASS 325
S+P T P + + + T NSL V W+PP+ Y + +PG+
Sbjct: 190 RSSPVVIDASTAIDAPSNLRFL--ATTPNSLLVSWQPPRA--RITGYIIK--YEKPGSPP 243
Query: 326 TPITKSRDEPTQCDMSEGLEPGRTYQVLVKTVSGK 360
+ GLEPG Y + V +
Sbjct: 244 REVVPRPRPGVTEATITGLEPGTEYTIYVIALKNN 278
Score = 96.0 bits (239), Expect = 6e-23
Identities = 55/256 (21%), Positives = 101/256 (39%), Gaps = 11/256 (4%)
Query: 22 SSDNSTYRLDYIPAHGHPPPNTTYVSRDIKDNIEFSEGLPGTKYDFYLYYTNSTVH-DWL 80
+ + YR+ P P ++ D ++ S + TKY+ +Y T+
Sbjct: 45 NVQLTGYRVRVTPKEKTGPMKEINLAPD-SSSVVVSGLMVATKYEVSVYALKDTLTSRPA 103
Query: 81 TWTASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFT 140
+ PP V + T I W + +GF++ + + +TP +
Sbjct: 104 QGVVTTLENVSPPRRARVTDATETTITISWRTK-TETITGFQVDAVPANGQTPIQRT--I 160
Query: 141 ENPPAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLL 200
+ Y++ L PG Y++ L+++ D+ S + + +T + P +LL
Sbjct: 161 KPDVRSYTITGLQPGTDYKIYLYTLNDNARS-SPVVIDASTAIDAPSNLRFLATTPNSLL 219
Query: 201 VLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQT 260
V WQP P + T Y + + P +P + PG +A GL PG Y I V
Sbjct: 220 VSWQP--PRARITGYIIKYEKPGSPPREVVPR---PRPGVTEATITGLEPGTEYTIYVIA 274
Query: 261 VSEDEISTPTTAQYRT 276
+ ++ S P + +T
Sbjct: 275 LKNNQKSEPLIGRKKT 290
Score = 74.4 bits (183), Expect = 3e-15
Identities = 37/203 (18%), Positives = 64/203 (31%), Gaps = 18/203 (8%)
Query: 163 FSVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPP 222
+ + S P T+L W P P T Y+V + P
Sbjct: 1 MAHHHHHHSSGLEVLFQGPAIPAPTDLKFTQVTPTSLSAQWTP--PNVQLTGYRVRVTPK 58
Query: 223 DAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTVSEDEISTPTTAQYRTI----P 278
+ + + P + GL+ Y +SV + + S P T+ P
Sbjct: 59 EKTGPMKEINL---APDSSSVVVSGLMVATKYEVSVYALKDTLTSRPAQGVVTTLENVSP 115
Query: 279 LRPLSFTYDKASITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQC 338
R T T ++ + W +QV P TPI ++ +
Sbjct: 116 PRRARVT----DATETTITISWRTKTE--TITGFQVD---AVPANGQTPIQRTIKPDVRS 166
Query: 339 DMSEGLEPGRTYQVLVKTVSGKP 361
GL+PG Y++ + T++
Sbjct: 167 YTITGLQPGTDYKIYLYTLNDNA 189
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 108 bits (271), Expect = 3e-28
Identities = 46/194 (23%), Positives = 76/194 (39%), Gaps = 6/194 (3%)
Query: 83 TASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTEN 142
PT+LS + + + W+P S G+++ V++ E P F ++
Sbjct: 16 PRGSHMEVPQPTDLSFVDITDSSIGLRWTPLNSSTIIGYRITVVAAGEGIPIFED-FVDS 74
Query: 143 PPAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVL 202
Y++ L PG Y + +++V + ES T+ T P T+ V
Sbjct: 75 SVGYYTVTGLEPGIDYDISVYTVKNGGESTP-TTLTQQTAVPPPTDLRFTNIGPDTMRVT 133
Query: 203 WQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTVS 262
W P P+ T++ V P E V + P L+PG Y +SV +V
Sbjct: 134 WAPP-PSIDLTNFLVRYSPVKNEEDVAELSI---SPSDNAVVLTNLLPGTEYVVSVSSVY 189
Query: 263 EDEISTPTTAQYRT 276
E STP + +T
Sbjct: 190 EQHESTPLRGRQKT 203
Score = 87.2 bits (216), Expect = 2e-20
Identities = 40/197 (20%), Positives = 72/197 (36%), Gaps = 9/197 (4%)
Query: 164 SVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPD 223
S + S R + P ++++ + W P +S Y++++
Sbjct: 4 SHHHHHHSSGLVPRGSHMEVPQPTDLSFVDITDSSIGLRWTPL-NSSTIIGYRITVVAAG 62
Query: 224 APESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTVSEDEISTPTTAQYRTIPLRPLS 283
+ ++ GL PG Y+ISV TV STPTT +T P
Sbjct: 63 EGIPI---FEDFVDSSVGYYTVTGLEPGIDYDISVYTVKNGGESTPTTLTQQTAVPPPTD 119
Query: 284 FTYDKASITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEG 343
+ +I +++RV W PP + + V + + ++ S + +
Sbjct: 120 LRFT--NIGPDTMRVTWAPPPS-IDLTNFLVRYSPVKNEEDVAELSISPSDNAV--VLTN 174
Query: 344 LEPGRTYQVLVKTVSGK 360
L PG Y V V +V +
Sbjct: 175 LLPGTEYVVSVSSVYEQ 191
Score = 64.1 bits (156), Expect = 3e-12
Identities = 40/160 (25%), Positives = 61/160 (38%), Gaps = 5/160 (3%)
Query: 22 SSDNSTYRLDYIPAHGHPPPNTTYVSRDIKDNIEFSEGLPGTKYDFYLY-YTNSTVHDWL 80
SS YR+ + A P +V + + PG YD +Y N
Sbjct: 48 SSTIIGYRITVVAAGEGIPIFEDFVDSSVG-YYTVTGLEPGIDYDISVYTVKNGGESTPT 106
Query: 81 TWTASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFT 140
T T T PPT+L T ++ W+PP S + F ++ + + + +
Sbjct: 107 TLTQ--QTAVPPPTDLRFTNIGPDTMRVTWAPPPSIDLTNFLVRYSPVKNEEDVAELSIS 164
Query: 141 ENPPAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFT 180
+ A L +L PG Y V + SVY+ ES R T
Sbjct: 165 PSDNA-VVLTNLLPGTEYVVSVSSVYEQHESTPLRGRQKT 203
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 107 bits (269), Expect = 4e-28
Identities = 48/183 (26%), Positives = 71/183 (38%), Gaps = 14/183 (7%)
Query: 178 NFTTKPNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEP 237
N T + P V ETTL + W+ P + + Y+++ P ++ + + P
Sbjct: 2 NAGTDLDNPKDLEVSDPTETTLSLRWRR--PVAKFDRYRLTYVSPSGKKNEMEI-----P 54
Query: 238 PGPAQAAFKGLVPGRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLR 297
+GL G Y IS+ S PTT + T+ P ++ IT NS
Sbjct: 55 VDSTSFILRGLDAGTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFS--DITENSAT 112
Query: 298 VVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRTYQVLVKTV 357
V W PP+ D Y+VS P TP + D L PG Y V + +V
Sbjct: 113 VSWTPPRS--RVDSYRVSY---VPITGGTPNVVTVDGSKTRTKLVKLVPGVDYNVNIISV 167
Query: 358 SGK 360
G
Sbjct: 168 KGF 170
Score = 91.4 bits (227), Expect = 4e-22
Identities = 45/193 (23%), Positives = 70/193 (36%), Gaps = 13/193 (6%)
Query: 87 TTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAG 146
T D P +L V+ + T + W P K+ ++L +S S K I
Sbjct: 4 GTDLDNPKDLEVSDPTETTLSLRWRRP-VAKFDRYRLTYVSPSGKKNEMEIPVDST---S 59
Query: 147 YSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPS 206
+ L+ L G Y + L + +S T+ +T +P E + V W P
Sbjct: 60 FILRGLDAGTEYTISLVAEKGRHKSKP-TTIKGSTVVGSPKGISFSDITENSATVSWTP- 117
Query: 207 YPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPA-QAAFKGLVPGRAYNISVQTVSEDE 265
P S Y+VS P G + LVPG YN+++ +V E
Sbjct: 118 -PRSRVDSYRVSYVPITGGTP-----NVVTVDGSKTRTKLVKLVPGVDYNVNIISVKGFE 171
Query: 266 ISTPTTAQYRTIP 278
S P + +T
Sbjct: 172 ESEPISGILKTAL 184
Score = 55.5 bits (134), Expect = 2e-09
Identities = 35/170 (20%), Positives = 63/170 (37%), Gaps = 20/170 (11%)
Query: 22 SSDNSTYRLDYIPAHGH------PPPNTTYVSRDIKDNIEFSEGLPGTKYDFYLYYTNST 75
+ YRL Y+ G P +T+++ R + GT+Y L
Sbjct: 31 VAKFDRYRLTYVSPSGKKNEMEIPVDSTSFILRGLD---------AGTEYTISLV-AEKG 80
Query: 76 VHDWLTWTASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPR 135
H T +T P +S + + +A + W+PP + +++ + ++ TP
Sbjct: 81 RHKSKPTTIKGSTVVGSPKGISFSDITENSATVSWTPP-RSRVDSYRVSYVPITGGTPNV 139
Query: 136 IIGFTENPPAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNT 185
+ + L L PG Y V + SV +ES S T ++
Sbjct: 140 VT--VDGSKTRTKLVKLVPGVDYNVNIISVKGFEESEP-ISGILKTALDS 186
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 72.9 bits (178), Expect = 3e-14
Identities = 52/326 (15%), Positives = 105/326 (32%), Gaps = 29/326 (8%)
Query: 61 PGTKYDFYLYYTNSTVHDWLTWTASITT------PPDPPTNLSVNVRSGKTAQIFWSPPI 114
P T+Y+ + T + ++ T P P L V + I W P
Sbjct: 325 PDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFG 384
Query: 115 SGKYSGFKLKVI-------SLSEKTPPRIIGFTENPPAGYSLKDLTPGGSYQVQLFSVYD 167
+ E+ + TEN +++ +L+P + V+L +
Sbjct: 385 YNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNP 444
Query: 168 -----SKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQ-PSYPASIYTHYKVSIDP 221
S+E + T + P + I E + + W+ P+ + T Y+++
Sbjct: 445 EGRKESQELIVQTDEDLPGAV--PTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKA 502
Query: 222 PDAPESVLYVEKEGE----PPGPAQAAFKGLVPGRAYNISVQTVSEDEISTPTTAQYRT- 276
+ + + + + F GL PG Y+ +++ + P T Q+ T
Sbjct: 503 VSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTK 562
Query: 277 --IPLRPLSFTYDKASITSNSLRVVWEPPK-GFSEFDKYQVSINVRRPGASSTPITKSRD 333
P P + T N++ V+ +P + YQ+ + RP + +
Sbjct: 563 ISAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKC 622
Query: 334 EPTQCDMSEGLEPGRTYQVLVKTVSG 359
P Y + +
Sbjct: 623 YPVPIHFQNASLLNSQYYFAAEFPAD 648
Score = 56.7 bits (136), Expect = 6e-09
Identities = 35/294 (11%), Positives = 75/294 (25%), Gaps = 21/294 (7%)
Query: 86 ITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPA 145
+ PP P + I + + + + + +
Sbjct: 258 VKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTS 317
Query: 146 GYSLKDLTPGGSY--QVQLFSVYDSKESVAYTSRNFTTKPNTPGK----FIVWFRNETTL 199
Y + L P Y V L + + TK P + V +
Sbjct: 318 -YKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQI 376
Query: 200 LVLWQPSYPAS---IYTHYKVS-IDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYN 255
+ W+P + V E V Q L P +
Sbjct: 377 TIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVS 436
Query: 256 ISVQTVSEDEISTPTTAQYRT---IPLRPLSFTYDKASITSNSLRVVWEPP-KGFSEFDK 311
+ + ++ + +T +P + + S + + W P + +
Sbjct: 437 VKLILMNPEGRKESQELIVQTDEDLPGAVPTESIQG-STFEEKIFLQWREPTQTYGVITL 495
Query: 312 YQVSINVRRPGASSTPITKSRDEPTQCDMS-----EGLEPGRTYQVLVKTVSGK 360
Y+++ ++ ++ GL PG TY ++ + K
Sbjct: 496 YEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAK 549
Score = 50.9 bits (121), Expect = 4e-07
Identities = 42/291 (14%), Positives = 81/291 (27%), Gaps = 28/291 (9%)
Query: 18 PENLSSDNSTYRLDYIPAHGHPPPNTTYVSRDIKDN---IEFSEGLPGTKYDFYLYYTNS 74
+ + Y G VS D +++ + P T L N
Sbjct: 385 YNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNP 444
Query: 75 TVHDWLTWTASIT---TPPDPPTNLSVNVRSGKTAQIFWSPPIS--GKYSGFKLKVISLS 129
T P PT + + W P G + +++ ++S
Sbjct: 445 EGRKESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVS 504
Query: 130 EKTPPRIIGFTENPPAG------YSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKP 183
P + + + L PG +Y + +K + FTTK
Sbjct: 505 SFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTI-RASTAKGFGPPATNQFTTKI 563
Query: 184 NTPG-----KFIVWFRNETTLLVLWQ-PSYPASIYTHYKVSIDPPDAPESVLYVEKEGEP 237
+ P + + T+ V+ + + + Y++ ++ + E
Sbjct: 564 SAPSMPAYELETPLNQTDNTVTVMLKPAHSRGAPVSVYQIVVEEERPRRTKKTTEILKCY 623
Query: 238 PGPAQAAFKGLVPGRAYNISVQTVSEDEISTPTTA-------QYRTIPLRP 281
P P L+ + Y + + + P T Y PL P
Sbjct: 624 PVPIHFQNASLLNSQYYFAAEFPADSLQAAQPFTIGDNKTYNGYWNTPLLP 674
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 70.0 bits (170), Expect = 3e-13
Identities = 49/343 (14%), Positives = 89/343 (25%), Gaps = 56/343 (16%)
Query: 73 NSTVHDWLTWTASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKV------- 125
+ T P P L ++ WS + V
Sbjct: 144 GCGHTCQVPKTLYKGVPLKPRKELRFTELQSGQLEVKWSSKFNISIEPVIYVVQRRWNYG 203
Query: 126 ISLSEKTPPRIIGFTENPPAGYSLKDLTPGGSYQVQLFSVYD------SKESVAYTSRNF 179
I SE + L D+ P YQ ++ +V + S + S
Sbjct: 204 IHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAVNVHGTRGFTAPSKHFRSSKD 263
Query: 180 TTKPNTPGKFIV-----WFRNETTLLVLWQ-PSYPASIYTHYKVSIDPPDAPESVLYVEK 233
+ P P + T+ ++W P P HYKV + +S++ +K
Sbjct: 264 PSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVHHYKVFWSWMVSSKSLVPTKK 323
Query: 234 EGE---PPGPAQAAFKGLVPGRAYNISVQTVS---------------------------- 262
+ + L P Y + +Q ++
Sbjct: 324 KRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLKSAKVSLHFTSTHATNNKEQL 383
Query: 263 ---EDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKGFSEFDKYQVS--IN 317
R P RPL ++V W+ + ++Y V
Sbjct: 384 VKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTED-PTVNRYHVRWFPE 442
Query: 318 VRRPGASSTPITKSRDEPTQCDMSEGLEPGRTYQVLVKTVSGK 360
++ S + + L Y+V V+ + K
Sbjct: 443 ACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPK 485
Score = 47.6 bits (112), Expect = 4e-06
Identities = 55/434 (12%), Positives = 109/434 (25%), Gaps = 91/434 (20%)
Query: 18 PENLSSDNSTYRLDYIPAHG-HPPPNTTYVSRDIKDNIEFS---EGL-PGTKYDFYLYYT 72
N+S + Y + +G HP + + + + + P Y F +
Sbjct: 184 KFNISIEPVIYVVQRRWNYGIHPSEDDATHWQTVAQTTDERVQLTDIRPSRWYQFRVAAV 243
Query: 73 NST-VHDWLTWTASITTPPDP----------PTNLSVNVRSGKTAQIFWSPPIS--GKYS 119
N + + + DP N +VN T I W P
Sbjct: 244 NVHGTRGFTAPSKHFRSSKDPSAPPAPANLRLANSTVNSDGSVTVTIVWDLPEEPDIPVH 303
Query: 120 GFKL--KVISLSEKTPPRIIGFTENPPAG---YSLKDLTPGGSYQVQLFSV--------- 165
+K+ + S+ P + L+ L P Y V+L ++
Sbjct: 304 HYKVFWSWMVSSKSLVPTKKKRRKTTDGFQNSVILEKLQPDCDYVVELQAITYWGQTRLK 363
Query: 166 -------YDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVS 218
+ S + + T+ + + R T + + KV
Sbjct: 364 SAKVSLHFTSTHATNNKEQLVKTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVY 423
Query: 219 IDPPDAPESVLYV---------EKEGEPPGPAQAA-------FKGLVPGRAYNISVQ--- 259
+ P Y + + L Y ++VQ
Sbjct: 424 WKKTEDPTVNRYHVRWFPEACAHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIR 483
Query: 260 -----TVSEDEISTP------------------TTAQYRTIPLRPLSFTYDKASITSN-S 295
+TP + +P + + N +
Sbjct: 484 PKSHSKAEAVFFTTPPCSALKGKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNIT 543
Query: 296 LRVVWEPPK--GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMS-------EGLEP 346
W+ K + +QV+ + + S +Q S L P
Sbjct: 544 GHFSWKMAKANLYQPMTGFQVTWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRP 603
Query: 347 GRTYQVLVKTVSGK 360
Y++ V+ ++
Sbjct: 604 STLYRLEVQVLTPG 617
Score = 37.2 bits (85), Expect = 0.008
Identities = 31/250 (12%), Positives = 60/250 (24%), Gaps = 43/250 (17%)
Query: 75 TVHDWLTWTASITTPPDPPTNLSVNVR----SGKTAQIFWSPPISGKYSGFKLKV---IS 127
T P L V +++W + + ++
Sbjct: 385 KTRKGGIQTQLPFQRRRPTRPLEVGAPFYQDGQLQVKVYWKKTEDPTVNRYHVRWFPEAC 444
Query: 128 LSEKTPPRIIGFTENPPAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTT------ 181
+T L+DL+ Y+V + + S A T
Sbjct: 445 AHNRTTGSEASSGMTHENYIILQDLSFSCKYKVTVQPIRPKSHSKAEAVFFTTPPCSALK 504
Query: 182 ----------------------KPNTPGKFIVWFRNETTLLVLWQPSYPA--SIYTHYKV 217
KP + T W+ + T ++V
Sbjct: 505 GKSHKPIGCLGEAGHVLSKVLAKPENLSASFIVQDVNITGHFSWKMAKANLYQPMTGFQV 564
Query: 218 ------SIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTVSEDEISTPTT 271
+ ++ + + + + P L P Y + VQ ++ T
Sbjct: 565 TWAEVTTESRQNSLPNSIISQSQILPSDHYVLTVPNLRPSTLYRLEVQVLTPGGEGPATI 624
Query: 272 AQYRTIPLRP 281
+RT L P
Sbjct: 625 KTFRTPELPP 634
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 65.8 bits (160), Expect = 7e-13
Identities = 34/207 (16%), Positives = 67/207 (32%), Gaps = 25/207 (12%)
Query: 88 TPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAGY 147
+ P ++ + I W+ P S + L+ + + + Y
Sbjct: 1 SGP-VEVFITETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATIPGHL-NSY 58
Query: 148 SLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTK------------------PNTPGKF 189
++K L PG Y+ QL S+ TT P
Sbjct: 59 TIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSE 118
Query: 190 IVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLV 249
V ++ +V W + + ++V + + + Y++ P L+
Sbjct: 119 SVTEITASSFVVSWVS--ASDTVSGFRVEYELSEEGDEPQYLDL---PSTATSVNIPDLL 173
Query: 250 PGRAYNISVQTVSEDEISTPTTAQYRT 276
PGR Y ++V +SED + + +T
Sbjct: 174 PGRKYIVNVYQISEDGEQSLILSTSQT 200
Score = 52.4 bits (125), Expect = 3e-08
Identities = 32/181 (17%), Positives = 56/181 (30%), Gaps = 25/181 (13%)
Query: 196 ETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYN 255
+ + W P+ I + Y + P ++ P KGL PG Y
Sbjct: 15 PNSHPIQWNAPQPSHI-SKYILRWRPKNSVGRWKEATI---PGHLNSYTIKGLKPGVVYE 70
Query: 256 ISVQTVSEDEISTPTTAQYRT----IPLRPLSFTYDKA-------------SITSNSLRV 298
+ ++ + T + T P+ + T + IT++S V
Sbjct: 71 GQLISIQQYGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVV 130
Query: 299 VWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRTYQVLVKTVS 358
W ++V + G + T ++ L PGR Y V V +S
Sbjct: 131 SWVSASD--TVSGFRVEYELSEEGDEPQYLDLPSTA-TSVNIP-DLLPGRKYIVNVYQIS 186
Query: 359 G 359
Sbjct: 187 E 187
Score = 45.0 bits (106), Expect = 9e-06
Identities = 33/174 (18%), Positives = 57/174 (32%), Gaps = 25/174 (14%)
Query: 28 YRLDYIPAHGHPPPNTTYVSRDIKDNIEFSEGLPGTKYDFYLYYTNSTVHDWLTWTASIT 87
Y L + P + + ++ PG Y+ L H +T T
Sbjct: 33 YILRWRPKNSVGRWKEATIPGH-LNSYTIKGLKPGVVYEGQLISIQQYGHQEVTRFDFTT 91
Query: 88 T------------------PPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLS 129
T P T+ SV + + + W S SGF+++
Sbjct: 92 TSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSA-SDTVSGFRVEYELSE 150
Query: 130 EKTPPRIIGFTENPPAG--YSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTT 181
E P+ + + P ++ DL PG Y V ++ + + E S + TT
Sbjct: 151 EGDEPQYL---DLPSTATSVNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 201
Score = 36.2 bits (83), Expect = 0.009
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 3/70 (4%)
Query: 290 SITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRT 349
NS + W P+ S KY + + T + +GL+PG
Sbjct: 12 PSQPNSHPIQWNAPQP-SHISKYILRWRPKNSVGRWKEATIPGHLNSY--TIKGLKPGVV 68
Query: 350 YQVLVKTVSG 359
Y+ + ++
Sbjct: 69 YEGQLISIQQ 78
>2gys_A Cytokine receptor common beta chain; dimer of interlocking chains
of fibronectin-III domains, FOU fibronectin-III domains
PER chain; HET: NAG FUC BMA NDG; 2.70A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1gh7_A*
3cxe_A* 1egj_A* 1c8p_A
Length = 419
Score = 68.1 bits (165), Expect = 8e-13
Identities = 52/376 (13%), Positives = 98/376 (26%), Gaps = 45/376 (11%)
Query: 18 PENLSSDNSTYRLDYIPAHGHPPPNTTYVSRDIKDN-------IEFSEGLPGTKYDFYLY 70
+ L P + +S D+ + + +P +
Sbjct: 25 DTQDAQRLVNVTLIRRVNEDLLEPVSCDLSDDMPWSACPHPRCVPRRCVIPCQSFVVTDV 84
Query: 71 Y-----TNSTVHDWLTWTASITTPPDPPTNLSVNVRSGKTAQIFWSPP--------ISGK 117
+ + LT T + P P +L ++ + WS +S
Sbjct: 85 DYFSFQPDRPLGTRLTVTLTQHVQPPEPRDLQISTDQD-HFLLTWSVALGSPQSHWLSPG 143
Query: 118 YSGFKLKVISLSEKTPPRIIGFTENPPAGYSLKDLTPGGSYQVQL---------FSVYDS 168
F++ L + I + A + L P +Y ++ S S
Sbjct: 144 DLEFEVVYKRLQDSWEDAAILLSNTSQATLGPEHLMPSSTYVARVRTRLAPGSRLSGRPS 203
Query: 169 KESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDP-PDAPES 227
K S + P +F L W+ + + + P PDA +
Sbjct: 204 KWSPEVCWDSQPGDEAQPQNLECFFDGAAVLSCSWEVRKEVASSVSFGLFYKPSPDAGSA 263
Query: 228 VLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYD 287
VL E+E P ++ + V + + +
Sbjct: 264 VLLREEECSP----VLREGLGSLHTRHHCQI-PVPDPATHGQYIVSVQPRRAEKHIKSSV 318
Query: 288 ---------KASITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQC 338
+ + +S + WE K E + I R+ A+ +
Sbjct: 319 NIQMAPPSLQVTKDGDSYSLRWETMKMRYEHIDHTFEIQYRKDTATWKDSKTETLQNAHS 378
Query: 339 DMSEGLEPGRTYQVLV 354
LEP Y V
Sbjct: 379 MALPALEPSTRYWARV 394
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 66.6 bits (162), Expect = 3e-12
Identities = 46/360 (12%), Positives = 100/360 (27%), Gaps = 40/360 (11%)
Query: 27 TYRLDYIPAHGHPPPNTTYVSRDIKDNIEFSEGLPGTKYDFYLYYTN---STVHDWLTWT 83
+ L A +++S + + ++ N D + +
Sbjct: 134 NFTLKSEWATHKFADCKAKRDTPTSCTVDYST-VYFVNIEVWVEAENALGKVTSDHINFD 192
Query: 84 ASITTPPDPPTNLSVNVRSGK--TAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTE 141
P+PP NLSV ++ W+ P K + ++ E
Sbjct: 193 PVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPE 252
Query: 142 NPPAG---YSLKDLTPGGSYQVQLFSVYD---SKESVAYTSRNFTTKPNTPGKFIVWFR- 194
+ + ++++DL P Y ++ + + S + T + P K ++
Sbjct: 253 DTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSFWYK 312
Query: 195 -------NETTLLVLWQP---SYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAA 244
T+ ++W+ Y+V++ + V
Sbjct: 313 IDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVN---------ATK 363
Query: 245 FKGLVPGRAYNISVQTVSED---EISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWE 301
+ Y ++ + + + T P+ KA N L V W
Sbjct: 364 LTVNLTNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDL--KAFPKDNMLWVEWT 421
Query: 302 PPKGFSEFDKYQVS-INVRRPGASSTPITKSRDEPTQCDMSEGLEPGRTYQVLVKTVSGK 360
P+ KY + + T + + + L + Y + V V
Sbjct: 422 TPRE--SVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYAD 479
Score = 62.7 bits (152), Expect = 5e-11
Identities = 49/322 (15%), Positives = 89/322 (27%), Gaps = 34/322 (10%)
Query: 63 TKYDFYLYYTNSTVHDWLTWTASITT----PPDPPTNLSVNVRSGKTAQIFWSPP-ISGK 117
+ L T IT PP+ P NLS V GK + W +
Sbjct: 72 ASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEWDGGRETHL 131
Query: 118 YSGFKLKVISLSEKTPPRIIGFTENPPAGYSLKDLTPGGSY--QVQLFSVYDSKESVAYT 175
+ F LK + K + P + + V+ + S
Sbjct: 132 ETNFTLKSEWATHKFAD-CKAKRDTPTSCTVDYSTVYFVNIEVWVEAENALGKVTSDHIN 190
Query: 176 SRNF-TTKPNTPGKFIVWFRNETTLLVLWQ---PSYPASIYTHYKVSIDPPDAPESVLYV 231
KPN P V E + ++ PS + I Y + DA +
Sbjct: 191 FDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYRTKDASTWS-QI 249
Query: 232 EKEGEPPGPAQAAFKGLVPGRAYNISVQTVSEDEISTPT----TAQYRTIPLRP------ 281
E + + L P Y ++ + ED + A T RP
Sbjct: 250 PPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDGKGYWSDWSEEASGITYEDRPSKAPSF 309
Query: 282 LSFTYDKASITSNSLRVVWEPPKGF---SEFDKYQVSINVRRPGASSTPITKSRDEPTQC 338
+ ++++VW+ F + Y+V++ + + + ++
Sbjct: 310 WYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVNATKL----- 364
Query: 339 DMSEGLEPGRTYQVLVKTVSGK 360
Y + +
Sbjct: 365 ---TVNLTNDRYLATLTVRNLV 383
Score = 58.1 bits (140), Expect = 2e-09
Identities = 56/363 (15%), Positives = 94/363 (25%), Gaps = 41/363 (11%)
Query: 18 PENLSSDNSTYRLDYIPAHGHPPPNTTYVSRDIKDNIEFSEGL-PGTKYDFYLYYTNSTV 76
P S Y + Y + + L P T+Y F +
Sbjct: 224 PSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIRCMKEDG 283
Query: 77 HD-WLTWT--ASITTPPDPPTNLSVNVR--------SGKTAQIFWSPPISGKYSGFKLK- 124
W W+ AS T D P+ +T Q+ W + +G L
Sbjct: 284 KGYWSDWSEEASGITYEDRPSKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDY 343
Query: 125 VISLSEKTPPRIIGFTENPPAGYSLKDLTPGGSYQVQLF---SVYDSKESVAYTSRNFTT 181
++L+ L Y L V S +V
Sbjct: 344 EVTLTRWKSHL----QNYTVNATKLTVNLTNDRYLATLTVRNLVGKSDAAVLTIPAC-DF 398
Query: 182 KPNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKV--SIDPPDAPESVLYVEKEGEPPG 239
+ P + F + L V W P Y + + AP + + E
Sbjct: 399 QATHPVMDLKAFPKDNMLWVEWTT--PRESVKKYILEWCVLSDKAPCITDWQQ---EDGT 453
Query: 240 PAQAAF-KGLVPGRAYNISVQTVSEDEISTPTTAQYRT---IPLRPLSFTYDKASITSNS 295
+ L + Y I+V V D +P + + P + + K + N
Sbjct: 454 VHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKK--VGKNE 511
Query: 296 LRVVWEPP---KGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRTYQV 352
+ W+ Y + R + T+ +S L Y V
Sbjct: 512 AVLEWDQLPVDVQNGFIRNYTIFY---RTIIGNETAVNVDSSHTEYTLS-SLTSDTLYMV 567
Query: 353 LVK 355
+
Sbjct: 568 RMA 570
Score = 55.8 bits (134), Expect = 9e-09
Identities = 27/268 (10%), Positives = 60/268 (22%), Gaps = 22/268 (8%)
Query: 18 PENLSSDNSTYRLDYIPAHGHPPPNTTYVSRDIKDNIEFSEGLPGTKYDFYLYYTNS--T 75
P + Y + H T + + + L +Y L N
Sbjct: 333 PFEANGKILDYEVTLTRWKSHLQNYTV-------NATKLTVNLTNDRYLATLTVRNLVGK 385
Query: 76 VHDWLTWTASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKL--KVISLSEKTP 133
+ + P + W+ P + L V+S
Sbjct: 386 SDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTP-RESVKKYILEWCVLSDKAPCI 444
Query: 134 PRIIGFTENPPAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFT--TKPNTPGKFIV 191
Y +L Y + + VY + + + P+
Sbjct: 445 TDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRT 504
Query: 192 WFRNETTLLVLWQP---SYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGL 248
+ ++ W +Y + E+ + V + L
Sbjct: 505 KKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNETAVNV-----DSSHTEYTLSSL 559
Query: 249 VPGRAYNISVQTVSEDEISTPTTAQYRT 276
Y + + +++ + T
Sbjct: 560 TSDTLYMVRMAAYTDEGGKDGPEFTFTT 587
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 66.5 bits (161), Expect = 4e-12
Identities = 44/324 (13%), Positives = 93/324 (28%), Gaps = 32/324 (9%)
Query: 61 PGTKYDFYLYYTNSTVHDWLTWTA-----SITTP---PDPPTNLSVNVRSGKTAQIFWSP 112
P T+Y ++ + + T+ A + T P P + S + W P
Sbjct: 558 PWTQYAIFVKTLVTFSDERRTYGAKSDIIYVQTDATNPSVPLDPISVSNSSSQIILKWKP 617
Query: 113 PIS--GKYSGFKLKVISLSEKTPPRIIGFTENPPAGYSLKDLTPGGSYQVQLFSVYDSKE 170
P G + + + +E + + + P ++ S K
Sbjct: 618 PSDPNGNITHYLVFWERQAEDSELFELDYCLKGL-------KLPSRTWSPPFESEDSQKH 670
Query: 171 SVAYTSRNFTTKPNTPGKFIVWFR--NETTLLVLWQPSYPASIYTHYKVSIDPPDAPESV 228
+ + + + P + E++ ++ ++
Sbjct: 671 NQSEYEDSAGECCSCPKTDSQILKELEESSFRKTFEDYLHNVVFVPRPSRKRRSLGDVGN 730
Query: 229 LYVEKEGEP----PGPAQAAFKGLVPGRAYNISVQTVSEDEI----STPTTAQYRTIPLR 280
+E P GL Y I +Q ++D S RT+P
Sbjct: 731 AGNNEEHRPFEKVVNKESLVISGLRHFTGYRIELQACNQDTPEERCSVAAYVSARTMPEA 790
Query: 281 P---LSFTYDKASITSNSLRVVWEPPKGF-SEFDKYQVSINVRRPGASSTPITKSRDEPT 336
+ +N + ++W+ PK Y+VS T+
Sbjct: 791 KADDIVGPVTHEIFENNVVHLMWQEPKEPNGLIVLYEVSYRRYGDEELHLCDTRKHFALE 850
Query: 337 QCDMSEGLEPGR-TYQVLVKTVSG 359
+ GL PG + ++ +++G
Sbjct: 851 RGCRLRGLSPGNYSVRIRATSLAG 874
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 60.5 bits (147), Expect = 9e-12
Identities = 18/115 (15%), Positives = 39/115 (33%), Gaps = 7/115 (6%)
Query: 179 FTTKPNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPP 238
++ P+ P + E ++ W+P P + Y + + P AP P
Sbjct: 4 GSSGPDGPTQLRALNLTEGFAVLHWKP--PQNPVDTYDIQVTAPGAPPLQAET-----PG 56
Query: 239 GPAQAAFKGLVPGRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITS 293
LV Y +V+ + +++P + + T P + + +
Sbjct: 57 SAVDYPLHDLVLHTNYTATVRGLRGPNLTSPASITFTTGLEAPRDLEAKEVTPSG 111
Score = 59.0 bits (143), Expect = 3e-11
Identities = 23/103 (22%), Positives = 36/103 (34%), Gaps = 5/103 (4%)
Query: 84 ASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENP 143
+S ++ PD PT L + A + W PP + I ++ P + T
Sbjct: 2 SSGSSGPDGPTQLRALNLTEGFAVLHWKPP-QNPVDTY---DIQVTAPGAPPLQAETPGS 57
Query: 144 PAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTP 186
Y L DL +Y + + + S FTT P
Sbjct: 58 AVDYPLHDLVLHTNYTATVRGLRGPNLTSP-ASITFTTGLEAP 99
Score = 40.1 bits (94), Expect = 1e-04
Identities = 16/88 (18%), Positives = 27/88 (30%), Gaps = 8/88 (9%)
Query: 272 AQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKS 331
+ + P P ++T + W+PP+ D Y + V PGA
Sbjct: 2 SSGSSGPDGPTQLRA--LNLTEGFAVLHWKPPQN--PVDTYDIQ--VTAPGAPPLQAETP 55
Query: 332 RDEPTQCDMSEGLEPGRTYQVLVKTVSG 359
+ L Y V+ + G
Sbjct: 56 GSA-VDYPLH-DLVLHTNYTATVRGLRG 81
Score = 27.8 bits (62), Expect = 2.2
Identities = 6/38 (15%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 61 PGTKYDFYLYYTNSTVHDWLTWTASITTPPDPPTNLSV 98
T Y + + + TT + P +L
Sbjct: 68 LHTNYTATVRGLRGPNLTS-PASITFTTGLEAPRDLEA 104
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 61.7 bits (150), Expect = 3e-11
Identities = 37/229 (16%), Positives = 69/229 (30%), Gaps = 17/229 (7%)
Query: 89 PPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAGYS 148
P N + + W PP SGK G+++K + + ++ P
Sbjct: 5 DLGAPQNPNAKAAGSRKIHFNWLPP-SGKPMGYRVKYWIQGDSESEAHLLDSKVP--SVE 61
Query: 149 LKDLTPGGSYQVQLF---SVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQ- 204
L +L P Y++++ + + S + R P+ PG+ + T + W
Sbjct: 62 LTNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFNVVSSTVTQLSWAE 121
Query: 205 PSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQ--AAFKGLVPGRAYNISVQ--- 259
P+ T Y+V + + K+ P + L + Y +V+
Sbjct: 122 PAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARN 181
Query: 260 TVSEDEISTPTTAQYRTIPLRPLS----FTYDKASITSNSLRVVWEPPK 304
T P RP+S S +
Sbjct: 182 GAGWGPEREAIINL-ATQPKRPMSIPIIPDIPIVDAQSGEDYDSFLMYS 229
Score = 40.1 bits (94), Expect = 4e-04
Identities = 29/178 (16%), Positives = 52/178 (29%), Gaps = 16/178 (8%)
Query: 186 PGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAF 245
P + W P P+ Y+V ES ++ P
Sbjct: 9 PQNPNAKAAGSRKIHFNWLP--PSGKPMGYRVKYWIQGDSESEAHLLDSKVP----SVEL 62
Query: 246 KGLVPGRAYNISVQTVSED---EISTPTTAQ-YRTIPLRPLSFTYDKASITSNSLRVVWE 301
L P Y + V S+ + + ++ +P P ++ ++S ++ W
Sbjct: 63 TNLYPYCDYEMKVCAYGAQGEGPYSSLVSCRTHQEVPSEPGRLAFN--VVSSTVTQLSWA 120
Query: 302 PPKGF-SEFDKYQVSINVR--RPGASSTPITKSRDEPTQCDMS-EGLEPGRTYQVLVK 355
P E Y+V + D P + E L + Y+ VK
Sbjct: 121 EPAETNGEITAYEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVK 178
Score = 30.9 bits (70), Expect = 0.45
Identities = 10/101 (9%), Positives = 25/101 (24%), Gaps = 14/101 (13%)
Query: 28 YRLDYIPAHGHPPPNTTYVSRDIKDNIEFS---EGL-PGTKYDFYLYYTNS-----TVHD 78
Y + Y + P + + E L Y + + N
Sbjct: 132 YEVCYGLVNDDNRPIGPMKKVLVDNPKNRMLLIENLRESQPYRYTVKARNGAGWGPEREA 191
Query: 79 WLTWTASITTPPDPPTNLSVNVRSGKTAQIF-----WSPPI 114
+ P P + + ++ + + +S +
Sbjct: 192 IINLATQPKRPMSIPIIPDIPIVDAQSGEDYDSFLMYSDDV 232
Score = 30.5 bits (69), Expect = 0.60
Identities = 13/71 (18%), Positives = 20/71 (28%), Gaps = 5/71 (7%)
Query: 290 SITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRT 349
+ S + W PP G + Y+V S D L P
Sbjct: 16 AAGSRKIHFNWLPPSG--KPMGYRVK---YWIQGDSESEAHLLDSKVPSVELTNLYPYCD 70
Query: 350 YQVLVKTVSGK 360
Y++ V +
Sbjct: 71 YEMKVCAYGAQ 81
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 105
Score = 56.7 bits (137), Expect = 2e-10
Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 2/103 (1%)
Query: 84 ASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENP 143
+S ++ PP+NL++ + + Q+ W+PP G+ + L S P + +
Sbjct: 2 SSGSSGRSPPSNLALASETPDSLQVSWTPP-LGRVLHYWLTYAPASGLGPEKSV-SVPGA 59
Query: 144 PAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTP 186
+ +L DL Y+V + ++Y + S A ++ T P+ P
Sbjct: 60 RSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPSGP 102
Score = 47.8 bits (114), Expect = 2e-07
Identities = 17/102 (16%), Positives = 29/102 (28%), Gaps = 5/102 (4%)
Query: 180 TTKPNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPG 239
++ + P + +L V W P P HY ++ P V P
Sbjct: 5 SSGRSPPSNLALASETPDSLQVSWTP--PLGRVLHYWLTYAPASGLGPEKSVS---VPGA 59
Query: 240 PAQAAFKGLVPGRAYNISVQTVSEDEISTPTTAQYRTIPLRP 281
+ L Y + V + S +A +T
Sbjct: 60 RSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQTACPSG 101
Score = 37.0 bits (86), Expect = 0.001
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 290 SITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRT 349
S T +SL+V W PP G Y ++ ++ + + L+
Sbjct: 18 SETPDSLQVSWTPPLG--RVLHYWLTYAPASGLGPEKSVSVPGAR-SHVTLP-DLQAATK 73
Query: 350 YQVLVKTVSG 359
Y+VLV +
Sbjct: 74 YRVLVSAIYA 83
Score = 30.5 bits (69), Expect = 0.21
Identities = 14/68 (20%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 28 YRLDYIPAHGHPPPNTTYVSRDIKDNIEFSEGLPGTKYDFYLYYTNSTVHDWLTWTASIT 87
Y L Y PA G P + V + ++ + TKY + + T
Sbjct: 38 YWLTYAPASGLGPEKSVSVPGA-RSHVTLPDLQAATKYRVLVSAIYAAGRSEAVSATGQT 96
Query: 88 TPPDPPTN 95
P P++
Sbjct: 97 ACPSGPSS 104
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 54.8 bits (132), Expect = 7e-10
Identities = 29/103 (28%), Positives = 39/103 (37%), Gaps = 7/103 (6%)
Query: 180 TTKP-NTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPP 238
++ P P + T+ + WQPS A THY V P E
Sbjct: 5 SSGPLPPPRALTLAAVTPRTVHLTWQPSAGA---THYLVRCSPASPKGEEEERE---VQV 58
Query: 239 GPAQAAFKGLVPGRAYNISVQTVSEDEISTPTTAQYRTIPLRP 281
G + GL PGR Y +SVQ++ E S + RT P
Sbjct: 59 GRPEVLLDGLEPGRDYEVSVQSLRGPEGSEARGIRARTPTSGP 101
Score = 43.7 bits (103), Expect = 6e-06
Identities = 21/104 (20%), Positives = 38/104 (36%), Gaps = 4/104 (3%)
Query: 83 TASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTEN 142
++ + P PP L++ + +T + W P + + ++ S K
Sbjct: 2 SSGSSGPLPPPRALTLAAVTPRTVHLTWQPS--AGATHYLVRCSPASPKGEEEEREVQVG 59
Query: 143 PPAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTP 186
P L L PG Y+V + S+ + S A T + P
Sbjct: 60 RPE-VLLDGLEPGRDYEVSVQSLRGPEGSEA-RGIRARTPTSGP 101
Score = 41.4 bits (97), Expect = 4e-05
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 5/70 (7%)
Query: 290 SITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRT 349
++T ++ + W+P G Y V + P P +GLEPGR
Sbjct: 19 AVTPRTVHLTWQPSAG---ATHYLVRCSPASPKGEEEEREVQVGRPEVLL--DGLEPGRD 73
Query: 350 YQVLVKTVSG 359
Y+V V+++ G
Sbjct: 74 YEVSVQSLRG 83
Score = 26.7 bits (59), Expect = 5.8
Identities = 12/75 (16%), Positives = 22/75 (29%), Gaps = 4/75 (5%)
Query: 22 SSDNSTYRLDYIPAHGHPPPNTTYVSRDIKDNIEFSEGLPGTKYDFYLY-YTNSTVHDWL 80
S+ + Y + PA V + + PG Y+ + +
Sbjct: 32 SAGATHYLVRCSPASPKGEEEEREVQVG-RPEVLLDGLEPGRDYEVSVQSLRGPEGSEAR 90
Query: 81 TWTASITTPPDPPTN 95
A TP P++
Sbjct: 91 GIRA--RTPTSGPSS 103
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A 1ttg_A 3rzw_A
1fna_A
Length = 101
Score = 54.8 bits (132), Expect = 7e-10
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 10/103 (9%)
Query: 180 TTKPNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPG 239
++ + P K V T+LL+ W +S +Y+++ +E P
Sbjct: 2 SSVSSVPTKLEVVAATPTSLLISWDAPMSSSSVYYYRITYGETGGNSP----VQEFTVPY 57
Query: 240 PAQAA-FKGLVPGRAYNISVQTV-----SEDEISTPTTAQYRT 276
+ A GL PG Y I+V + +P + YRT
Sbjct: 58 SSSTATISGLSPGVDYTITVYAWGEDSAGYMFMYSPISINYRT 100
Score = 45.1 bits (107), Expect = 2e-06
Identities = 14/100 (14%), Positives = 35/100 (35%), Gaps = 2/100 (2%)
Query: 87 TTPPDPPTNLSVNVRSGKTAQIFWSPPIS-GKYSGFKLKVISLSEKTPPRIIGFTENPPA 145
++ PT L V + + I W P+S +++ +P + +
Sbjct: 2 SSVSSVPTKLEVVAATPTSLLISWDAPMSSSSVYYYRITYGETGGNSPVQEFTVPYSSST 61
Query: 146 GYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNT 185
++ L+PG Y + +++ + + + T
Sbjct: 62 -ATISGLSPGVDYTITVYAWGEDSAGYMFMYSPISINYRT 100
Score = 38.6 bits (90), Expect = 3e-04
Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 290 SITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMS-EGLEPGR 348
+ T SL + W+ P S Y+++ ++P+ + + + GL PG
Sbjct: 15 AATPTSLLISWDAPMSSSSVYYYRITY---GETGGNSPVQEFTVPYSSSTATISGLSPGV 71
Query: 349 TYQVLVKTVSGK 360
Y + V
Sbjct: 72 DYTITVYAWGED 83
>3bpo_C Interleukin-13 receptor alpha-1 chain; IL4, IL13, IL4R, IL13R,
cytokine, glycoprotein, IM response, membrane,
phosphoprotein, secreted; HET: NAG; 3.00A {Homo sapiens}
PDB: 3bpn_C*
Length = 314
Score = 58.4 bits (140), Expect = 9e-10
Identities = 47/288 (16%), Positives = 79/288 (27%), Gaps = 24/288 (8%)
Query: 87 TTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAG 146
T P TNLSV+V + T W+PP + +K +I T
Sbjct: 1 TETQPPVTNLSVSVENLCTVIWTWNPPEGASSNCSLWYFSHFGDKQDKKIAPETRR---- 56
Query: 147 YSLKDLTPGGSYQVQL-----FSVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLV 201
L QV S S S + + + N + +
Sbjct: 57 SIEVPLNERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKC 116
Query: 202 LWQPSYPASIYTHYKVSIDP---PDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISV 258
W P S T+Y + + + +++ +
Sbjct: 117 SWLPGRNTSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQI 176
Query: 259 QTVSEDEISTPTTAQYR-TIPLRPLSFTYDKASITSNSLRVVWEPPKGFSEFD-KYQVSI 316
P+ T ++P S ++ L V WE P+ F Y+V +
Sbjct: 177 MVKDNAGKIKPSFNIVPLTSRVKPDPPHIKNLSFHNDDLYVQWENPQNFISRCLFYEVEV 236
Query: 317 NVRRPGASSTPITKSRD----------EPTQCDMSEGLEPGRTYQVLV 354
N + + + E T C M G+ P V +
Sbjct: 237 NNSQTETHNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRI 284
Score = 31.8 bits (71), Expect = 0.35
Identities = 24/222 (10%), Positives = 52/222 (23%), Gaps = 25/222 (11%)
Query: 61 PGTKYDFYLYYTNSTVHDWLTWTASITT-----PPDPPTNLSVNVRSGKTAQIFWSP--- 112
+ + + P T L + + W P
Sbjct: 64 ERICLQVGSQCSTNESEKPSILVEKCISPPEGDPESAVTELQCIWHNLSYMKCSWLPGRN 123
Query: 113 -PISGKYSGFKLKVISLSEKTPPRIIGFTENPPAGYSLKDLTPGGSYQVQL-FSVYDSKE 170
Y+ + I + + L + Q + V D+
Sbjct: 124 TSPDTNYTLYYWHRSLEKIHQCENIFREGQYFGCSFDLTKVKDSSFEQHSVQIMVKDNAG 183
Query: 171 SVAYTSRNFTT----KPNTPGKFIVWFRNETTLLVLWQPSY-PASIYTHYKVSIDPPDAP 225
+ + KP+ P + L V W+ S Y+V ++
Sbjct: 184 KIKPSFNIVPLTSRVKPDPPHI-KNLSFHNDDLYVQWENPQNFISRCLFYEVEVNNSQTE 242
Query: 226 ESVLYVEKEGEPPGPAQAA---------FKGLVPGRAYNISV 258
++ +E + P G++P + +
Sbjct: 243 THNVFYVQEAKCENPEFERNVENTSCFMVPGVLPDTLNTVRI 284
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 54.4 bits (131), Expect = 9e-10
Identities = 20/104 (19%), Positives = 33/104 (31%), Gaps = 7/104 (6%)
Query: 178 NFTTKPNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEP 237
+ ++ P T L+ W P Y +S P + + P
Sbjct: 3 SGSSGLEAPRDLEAKEVTPRTALLTWTE--PPVRPAGYLLSFHTPGGQTQEILL-----P 55
Query: 238 PGPAQAAFKGLVPGRAYNISVQTVSEDEISTPTTAQYRTIPLRP 281
G GL P +YN +Q + + P + + T LR
Sbjct: 56 GGITSHQLLGLFPSTSYNARLQAMWGQSLLPPVSTSFTTGGLRI 99
Score = 52.5 bits (126), Expect = 5e-09
Identities = 20/100 (20%), Positives = 42/100 (42%), Gaps = 5/100 (5%)
Query: 84 ASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENP 143
+S ++ + P +L + +TA + W+ P + +G+ L + +T ++
Sbjct: 2 SSGSSGLEAPRDLEAKEVTPRTALLTWTEP-PVRPAGYLLSFHTPGGQTQEILLPGGITS 60
Query: 144 PAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKP 183
+ L L P SY +L +++ S +FTT
Sbjct: 61 ---HQLLGLFPSTSYNARLQAMWGQSLL-PPVSTSFTTGG 96
Score = 35.1 bits (81), Expect = 0.006
Identities = 14/70 (20%), Positives = 24/70 (34%), Gaps = 6/70 (8%)
Query: 290 SITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRT 349
+T + + W P Y +S PG + I T + GL P +
Sbjct: 18 EVTPRTALLTWTEPPV--RPAGYLLS--FHTPGGQTQEILLPGGI-TSHQL-LGLFPSTS 71
Query: 350 YQVLVKTVSG 359
Y ++ + G
Sbjct: 72 YNARLQAMWG 81
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 52.4 bits (126), Expect = 5e-09
Identities = 28/98 (28%), Positives = 36/98 (36%), Gaps = 3/98 (3%)
Query: 89 PPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAGYS 148
D P+ + V + TA I W PP S GF+L I TE+ YS
Sbjct: 2 RLDAPSQIEVKDVTDTTALITWMPP-SQPVDGFELTYGIKDVPGDRTTIDLTEDENQ-YS 59
Query: 149 LKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTP 186
+ +L P Y+V L S S FTT
Sbjct: 60 IGNLKPDTEYEVSLISRRGDMSSNP-AKETFTTGLAAA 96
Score = 45.8 bits (109), Expect = 1e-06
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 182 KPNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPA 241
+ + P + V +TT L+ W P P+ ++++ D P ++
Sbjct: 2 RLDAPSQIEVKDVTDTTALITWMP--PSQPVDGFELTYGIKDVPGDRTTID---LTEDEN 56
Query: 242 QAAFKGLVPGRAYNISVQTVSEDEISTPTTAQYRT 276
Q + L P Y +S+ + D S P + T
Sbjct: 57 QYSIGNLKPDTEYEVSLISRRGDMSSNPAKETFTT 91
Score = 41.6 bits (98), Expect = 3e-05
Identities = 15/70 (21%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 290 SITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRT 349
+T + + W PP D ++++ ++ T I + DE Q + L+P
Sbjct: 13 DVTDTTALITWMPPSQ--PVDGFELTYGIKDVPGDRTTIDLTEDE-NQYSI-GNLKPDTE 68
Query: 350 YQVLVKTVSG 359
Y+V + + G
Sbjct: 69 YEVSLISRRG 78
Score = 28.5 bits (64), Expect = 1.0
Identities = 12/74 (16%), Positives = 21/74 (28%), Gaps = 6/74 (8%)
Query: 28 YRLDYIPAHGHPPPNTTYVSRDIKDNIEFS-EGL-PGTKYDFYLYYTNSTVHDWLTWTAS 85
+ L Y T ++ D ++S L P T+Y+ L +
Sbjct: 33 FELTYGIKDVPGDRTTIDLTEDEN---QYSIGNLKPDTEYEVSLISRRG-DMSSNPAKET 88
Query: 86 ITTPPDPPTNLSVN 99
TT +
Sbjct: 89 FTTGLAAALEHHHH 102
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 50.5 bits (121), Expect = 2e-08
Identities = 20/93 (21%), Positives = 33/93 (35%), Gaps = 2/93 (2%)
Query: 91 DPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAGYSLK 150
D P L+ + +I W P G+ S +++ S + L+
Sbjct: 3 DRPKGLAFTDVDVDSIKIAWESP-QGQVSRYRVTYSSPEDGIHELFPAPDGEEDT-AELQ 60
Query: 151 DLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKP 183
L PG Y V + +++D ES T P
Sbjct: 61 GLRPGSEYTVSVVALHDDMESQPLIGTQSTAIP 93
Score = 47.0 bits (112), Expect = 3e-07
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 5/82 (6%)
Query: 195 NETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAY 254
+ ++ + W+ P + Y+V+ P+ L+ A +GL PG Y
Sbjct: 14 DVDSIKIAWES--PQGQVSRYRVTYSSPEDGIHELFPA---PDGEEDTAELQGLRPGSEY 68
Query: 255 NISVQTVSEDEISTPTTAQYRT 276
+SV + +D S P T
Sbjct: 69 TVSVVALHDDMESQPLIGTQST 90
Score = 41.2 bits (97), Expect = 4e-05
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 4/70 (5%)
Query: 290 SITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRT 349
+ +S+++ WE P+G + +Y+V+ + G +E ++ +GL PG
Sbjct: 12 DVDVDSIKIAWESPQG--QVSRYRVTYSSPEDGIHELFPAPDGEE-DTAEL-QGLRPGSE 67
Query: 350 YQVLVKTVSG 359
Y V V +
Sbjct: 68 YTVSVVALHD 77
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 52.9 bits (127), Expect = 2e-08
Identities = 31/182 (17%), Positives = 52/182 (28%), Gaps = 12/182 (6%)
Query: 89 PPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLK---VISLSEKTPPRIIGFTENPPA 145
P PP + ++ S T +I W+ K+ + P N
Sbjct: 4 PMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATT 63
Query: 146 -GYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTPG------KFIVWFRNETT 198
Y + L P Y+ + + S + + TT P + T
Sbjct: 64 LSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELVPTSPPKDVTVVSKEGKPKT 123
Query: 199 LLVLWQ-PSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNIS 257
++V WQ PS T Y + E +V + + L Y
Sbjct: 124 IIVNWQPPSEANGKITGYIIYYSTDVNAEIHDWVIEPV-VGNRLTHQIQELTLDTPYYFK 182
Query: 258 VQ 259
+Q
Sbjct: 183 IQ 184
Score = 34.0 bits (78), Expect = 0.041
Identities = 22/174 (12%), Positives = 43/174 (24%), Gaps = 19/174 (10%)
Query: 195 NETTLLVLWQPSYPASIY-----THYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLV 249
+ T+ + W + +Y V + GL
Sbjct: 17 SHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANATTL----SYLVTGLK 72
Query: 250 PGRAYNISVQTVSED------EISTPTTAQYRTIPLR-PLSFTYDKASITSNSLRVVWEP 302
P Y SV + TT + +P P T ++ V W+P
Sbjct: 73 PNTLYEFSVMVTKGRRSSTWSMTAHGTTFE--LVPTSPPKDVTVVSKEGKPKTIIVNWQP 130
Query: 303 P-KGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRTYQVLVK 355
P + + Y + + + + + L Y ++
Sbjct: 131 PSEANGKITGYIIYYSTDVNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKIQ 184
Score = 30.9 bits (70), Expect = 0.41
Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 290 SITSNSLRVVWEPP-----KGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGL 344
++ +++R+ W + ++ Y V + + K+ + T + GL
Sbjct: 15 ILSHDTIRITWADNSLPKHQKITDSRYYTVR---WKTNIPANTKYKNANATTLSYLVTGL 71
Query: 345 EPGRTYQVLVKTVSGK 360
+P Y+ V G+
Sbjct: 72 KPNTLYEFSVMVTKGR 87
Score = 28.6 bits (64), Expect = 2.4
Identities = 31/155 (20%), Positives = 56/155 (36%), Gaps = 15/155 (9%)
Query: 19 ENLSSDNSTYRLDYIPAHGHPPPNTTYVSRDIKDNIEFSEGL-PGTKYDFYLY-YTNSTV 76
+D+ Y + + P NT Y + + GL P T Y+F +
Sbjct: 33 HQKITDSRYYTVRWKTNI---PANTKYKNANATTLSYLVTGLKPNTLYEFSVMVTKGRRS 89
Query: 77 HDWLTWTASITTPPD----PPTNLSVNVR--SGKTAQIFWSPPIS--GKYSGFKLKVISL 128
W + TA TT PP +++V + KT + W PP GK +G+ + +
Sbjct: 90 STW-SMTAHGTTFELVPTSPPKDVTVVSKEGKPKTIIVNWQPPSEANGKITGYIIYYSTD 148
Query: 129 SEKTPPRIIGFTENPPA-GYSLKDLTPGGSYQVQL 162
+ + +++LT Y ++
Sbjct: 149 VNAEIHDWVIEPVVGNRLTHQIQELTLDTPYYFKI 183
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 52.9 bits (126), Expect = 8e-08
Identities = 39/215 (18%), Positives = 71/215 (33%), Gaps = 23/215 (10%)
Query: 81 TWTASITTPPDPPTNLSVNVRSGKTAQIFWSPPISG------KYSGFKLKVISLSEKTPP 134
+ T PP P L+ ++ W+PP YS + S + P
Sbjct: 325 PASMPCTRPPSAPHYLTAVGMG-AKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGP 383
Query: 135 RIIGFTENPPAG------YSLKDLTPGGSYQVQLF---SVYDSKESVAYTSRNFTTKPNT 185
+ P ++ DL P +Y + V S ++ + + +
Sbjct: 384 CEASVRYSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTE 443
Query: 186 PGKFIVWFRNETTLLVLWQ-PSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAA 244
P K + R+ T+L V W P S Y+V+ S EG
Sbjct: 444 PPKVRLEGRSTTSLSVSWSIPPPQQSRVWKYEVTYRKKGDSNSYNVRRTEGF-----SVT 498
Query: 245 FKGLVPGRAYNISVQTVSEDEISTPTTA-QYRTIP 278
L P Y + VQ ++++ + +++T+
Sbjct: 499 LDDLAPDTTYLVQVQALTQEGQGAGSKVHEFQTLS 533
Score = 40.1 bits (93), Expect = 0.001
Identities = 33/189 (17%), Positives = 50/189 (26%), Gaps = 20/189 (10%)
Query: 180 TTKPNTPGKFIVWFRNETTLLVLWQPSYPASIY--THYKVSIDPPDAPESVLYVEKEGEP 237
T+P + ++ + + W P + Y V+ + +
Sbjct: 330 CTRPPSAPHYLTAVGMGAKVELRWTPPQDSGGREDIVYSVTCEQCWPESGECGPCEASVR 389
Query: 238 PGPAQAAFK-------GLVPGRAYNISVQT---VSEDEISTPTTAQY-RTIPLRPLSFTY 286
L P Y +V+ VS S P
Sbjct: 390 YSEPPHGLTRTSVTVSDLEPHMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRL 449
Query: 287 DKASITSNSLRVVWEPP-KGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLE 345
+ ++ SL V W P S KY+V R S R E + L
Sbjct: 450 E--GRSTTSLSVSWSIPPPQQSRVWKYEV---TYRKKGDSNSYNVRRTEGFSVTLD-DLA 503
Query: 346 PGRTYQVLV 354
P TY V V
Sbjct: 504 PDTTYLVQV 512
Score = 37.8 bits (87), Expect = 0.004
Identities = 20/108 (18%), Positives = 35/108 (32%), Gaps = 10/108 (9%)
Query: 60 LPGTKYDFYLYYTN----STVHDWLTWTASITTPPDPPTNLSVNVRSGKTAQIFWSPPIS 115
P Y F + N TAS++ P + + RS + + WS P
Sbjct: 408 EPHMNYTFTVEARNGVSGLVTSRSFR-TASVSINQTEPPKVRLEGRSTTSLSVSWSIPPP 466
Query: 116 --GKYSGFKLKVISLSEKTPPRIIGFTENPPAGYSLKDLTPGGSYQVQ 161
+ +++ + + +L DL P +Y VQ
Sbjct: 467 QQSRVWKYEVTYRKKGDSNSYNVRRTEGFS---VTLDDLAPDTTYLVQ 511
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 108
Score = 49.0 bits (117), Expect = 8e-08
Identities = 19/103 (18%), Positives = 35/103 (33%), Gaps = 4/103 (3%)
Query: 84 ASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENP 143
+S ++ PP +L + S A++FW ++ +S +
Sbjct: 2 SSGSSGLAPPRHLGFSDVSHDAARVFWEGA-PRPVRLVRVTYVSSEGGHSGQTE--APGN 58
Query: 144 PAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTP 186
L L+ +Y V++ +Y S T TTK
Sbjct: 59 ATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTG-RVTTKKAPS 100
Score = 42.0 bits (99), Expect = 2e-05
Identities = 16/103 (15%), Positives = 28/103 (27%), Gaps = 8/103 (7%)
Query: 180 TTKPNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPG 239
++ P + V W+ +V+ + S + E PG
Sbjct: 5 SSGLAPPRHLGFSDVSHDAARVFWEG--APRPVRLVRVTYVSSEGGHS-----GQTEAPG 57
Query: 240 PA-QAAFKGLVPGRAYNISVQTVSEDEISTPTTAQYRTIPLRP 281
A A L Y + V + S+ T + T
Sbjct: 58 NATSAMLGPLSSSTTYTVRVTCLYPGGGSSTLTGRVTTKKAPS 100
Score = 34.3 bits (79), Expect = 0.011
Identities = 15/91 (16%), Positives = 24/91 (26%), Gaps = 12/91 (13%)
Query: 273 QYRTIPLRP---LSFTYDKASITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPIT 329
+ L P L F+ ++ ++ RV WE +V+
Sbjct: 2 SSGSSGLAPPRHLGFS----DVSHDAARVFWEGAPR--PVRLVRVTY---VSSEGGHSGQ 52
Query: 330 KSRDEPTQCDMSEGLEPGRTYQVLVKTVSGK 360
M L TY V V +
Sbjct: 53 TEAPGNATSAMLGPLSSSTTYTVRVTCLYPG 83
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 52.1 bits (125), Expect = 8e-08
Identities = 35/280 (12%), Positives = 73/280 (26%), Gaps = 26/280 (9%)
Query: 87 TTPPDPPTNL-SVNVRSGKTAQIFWSPPISGKYSGFKLK-VISLSEKTPPRIIGFTENPP 144
+ P + + + +T Q+ W + +G L ++L+
Sbjct: 5 SKAPSFWYKIDPSHTQGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHL----QNYTV 60
Query: 145 AGYSLKDLTPGGSYQVQLF---SVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLV 201
L Y L V S +V T + P + F + L V
Sbjct: 61 NATKLTVNLTNDRYLATLTVRNLVGKSDAAV-LTIPACDFQATHPVMDLKAFPKDNMLWV 119
Query: 202 LWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTV 261
W P Y + + ++ + L + Y I+V V
Sbjct: 120 EWTT--PRESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPV 177
Query: 262 SEDEISTPTTAQYRT---IPLRPLSFTYDKASITSNSLRVVWEPP---KGFSEFDKYQVS 315
D +P + + P + + + N + W+ Y +
Sbjct: 178 YADGPGSPESIKAYLKQAPPSKGPTVRTK--KVGKNEAVLEWDQLPVDVQNGFIRNYTIF 235
Query: 316 INVRRPGASSTPITKSRDEPTQCDMS-EGLEPGRTYQVLV 354
++ + + + + L Y V +
Sbjct: 236 YRTIIGNETAVNVD-----SSHTEYTLSSLTSDTLYMVRM 270
Score = 41.3 bits (97), Expect = 3e-04
Identities = 25/172 (14%), Positives = 44/172 (25%), Gaps = 16/172 (9%)
Query: 194 RNETTLLVLWQPSYPA---SIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVP 250
+ T+ ++W+ P Y+V++ + V +
Sbjct: 20 QGYRTVQLVWKTLPPFEANGKILDYEVTLTRWKSHLQNYTVN---------ATKLTVNLT 70
Query: 251 GRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYD-KASITSNSLRVVWEPPKGFSEF 309
Y ++ + S + D KA N L V W P+
Sbjct: 71 NDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRE--SV 128
Query: 310 DKYQVSINVRRPGASSTPITKSRDEPTQCDM-SEGLEPGRTYQVLVKTVSGK 360
KY + V A + D L + Y + V V
Sbjct: 129 KKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYAD 180
Score = 39.0 bits (91), Expect = 0.001
Identities = 19/149 (12%), Positives = 39/149 (26%), Gaps = 11/149 (7%)
Query: 22 SSDNSTYRLDYIPAHGHPPPNTTYVSRDIKDNIEF-SEGL-PGTKYDFYLY-YTNSTVHD 78
Y L++ P T + D + + L Y +
Sbjct: 125 RESVKKYILEWCVLSDKAPCITDWQQEDGTVHRTYLRGNLAESKCYLITVTPVYADGPGS 184
Query: 79 WLTWTASIT-TPPDPPTNLSVNVRSGKTAQIFWSPP----ISGKYSGFKLKVISLSEKTP 133
+ A + PP + A + W +G + + ++
Sbjct: 185 PESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQLPVDVQNGFIRNYTIFYRTIIGNET 244
Query: 134 PRIIGFTENPPAGYSLKDLTPGGSYQVQL 162
+ + Y+L LT Y V++
Sbjct: 245 AVNVDSSHT---EYTLSSLTSDTLYMVRM 270
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 48.6 bits (116), Expect = 9e-08
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 186 PGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAF 245
P +V E +L + W P + + + + + + + P
Sbjct: 5 PKNLVVSEVTEDSLRLSWTA--PDAAFDSFMIQYQESEKVGEAINLT---VPGSERSYDL 59
Query: 246 KGLVPGRAYNISVQTVSEDEISTPTTAQYRTIPLRP 281
GL PG Y +S+ V S P +A++ T
Sbjct: 60 TGLKPGTEYTVSIYGVKGGHRSNPLSAEFTTGGHHH 95
Score = 42.4 bits (100), Expect = 2e-05
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 3/96 (3%)
Query: 91 DPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAGYSLK 150
P NL V+ + + ++ W+ P + F ++ + + + + Y L
Sbjct: 3 PAPKNLVVSEVTEDSLRLSWTAP-DAAFDSFMIQYQESEKVGEAINLTVPGSERS-YDLT 60
Query: 151 DLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTP 186
L PG Y V ++ V S S FTT +
Sbjct: 61 GLKPGTEYTVSIYGVKGGHRSNP-LSAEFTTGGHHH 95
Score = 39.0 bits (91), Expect = 2e-04
Identities = 19/70 (27%), Positives = 30/70 (42%), Gaps = 4/70 (5%)
Query: 290 SITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRT 349
+T +SLR+ W P FD + + + +T E D++ GL+PG
Sbjct: 12 EVTEDSLRLSWTAPDA--AFDSFMIQYQESEKVGEAINLTVPGSE-RSYDLT-GLKPGTE 67
Query: 350 YQVLVKTVSG 359
Y V + V G
Sbjct: 68 YTVSIYGVKG 77
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus design,
S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 47.8 bits (114), Expect = 2e-07
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 5/96 (5%)
Query: 186 PGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAF 245
P V +T++ V W P P++ T Y+++ P + P + PP
Sbjct: 5 PTDLQVTNVTDTSITVSWTP--PSATITGYRITYTPSNGPGEPKELT---VPPSSTSVTI 59
Query: 246 KGLVPGRAYNISVQTVSEDEISTPTTAQYRTIPLRP 281
GL PG Y +SV + +++ S P T
Sbjct: 60 TGLTPGVEYVVSVYALKDNQESPPLVGTQTTGGHHH 95
Score = 44.7 bits (106), Expect = 2e-06
Identities = 22/99 (22%), Positives = 43/99 (43%), Gaps = 8/99 (8%)
Query: 91 DPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAG---Y 147
D PT+L V + + + W+PP S +G+++ + P+ + P
Sbjct: 3 DAPTDLQVTNVTDTSITVSWTPP-SATITGYRITYTPSNGPGEPKEL----TVPPSSTSV 57
Query: 148 SLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTP 186
++ LTPG Y V ++++ D++ES T +
Sbjct: 58 TITGLTPGVEYVVSVYALKDNQESPPLVGTQTTGGHHHH 96
Score = 37.8 bits (88), Expect = 6e-04
Identities = 16/70 (22%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 290 SITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRT 349
++T S+ V W PP Y+++ +T T ++ GL PG
Sbjct: 12 NVTDTSITVSWTPPSA--TITGYRITYTPSNGPGEPKELTVPPSS-TSVTIT-GLTPGVE 67
Query: 350 YQVLVKTVSG 359
Y V V +
Sbjct: 68 YVVSVYALKD 77
>3e0g_A Leukemia inhibitory factor receptor; IG domain, cytokine binding
homology region (CHR), cell MEMB disease mutation,
glycoprotein, membrane; HET: NAG MAN FUC; 3.10A {Homo
sapiens}
Length = 483
Score = 51.4 bits (122), Expect = 2e-07
Identities = 42/326 (12%), Positives = 95/326 (29%), Gaps = 38/326 (11%)
Query: 53 NIEFSEGLPGTKYDFYLYYTNSTVH-----DWLTWTASITTPPDPPTNL-----SVNVRS 102
+ L + + +H +W W+ P + +
Sbjct: 153 SWASDMPLECAIHFVEIRCYIDNLHFSGLEEWSDWSPVKQISWIPDSQTKVFPQDKVILV 212
Query: 103 GKTAQ---IFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAGYSLKDLTPGGSYQ 159
G + +S +I L + +++++ S
Sbjct: 213 GSDITFCCVSQEKVLSALIGHTNCPLIHLDGEN------------VAIKIRNISVSASSG 260
Query: 160 VQLFSVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVS- 218
+ + +++ T P+TP + + ++ W P ++ S
Sbjct: 261 TNVVFTTE--DNIFGTVIFAGYPPDTPQQLNCETHDLKEIICSWNPGRVTALVGPRATSY 318
Query: 219 -IDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTVSEDEISTPT---TAQY 274
+ + + V E Q F+ L YN ++ + S T
Sbjct: 319 TLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQSTILVNITE 378
Query: 275 RTIPLRPLSFTYDKASITSNSLRVVWEPPKGFSEFD-KYQVSINVRRPGASSTPITKSRD 333
+ P P SF I S ++++ W P F++ + ++ I +T
Sbjct: 379 KVYPHTPTSFKVK--DINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNVTIQGV 436
Query: 334 EPTQCDMS-EGLEPGRTY--QVLVKT 356
E + ++ + L P Y ++ T
Sbjct: 437 ENSSYLVALDKLNPYTLYTFRIRCST 462
Score = 49.1 bits (116), Expect = 1e-06
Identities = 22/147 (14%), Positives = 44/147 (29%), Gaps = 6/147 (4%)
Query: 22 SSDNSTYRLDYIPAHGHPPPNTTYVSRDIKDNIEFSEGLPGTKYDFYLYYTNSTVHDWLT 81
++Y L + + + + F Y+F L N T
Sbjct: 312 GPRATSYTLVESFSGKYVRLKRAEAPTNESYQLLFQMLPNQEIYNFTLNAHNPLGRSQST 371
Query: 82 WTASIT--TPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSG--FKLKVISLSEKTPPRII 137
+IT P PT+ V + ++ W P + ++++ + R +
Sbjct: 372 ILVNITEKVYPHTPTSFKVKDINSTAVKLSWHLPGNFAKINFLCEIEIKKSNSVQEQRNV 431
Query: 138 GFTENPPAGYS--LKDLTPGGSYQVQL 162
+ Y L L P Y ++
Sbjct: 432 TIQGVENSSYLVALDKLNPYTLYTFRI 458
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 48.0 bits (114), Expect = 2e-07
Identities = 27/125 (21%), Positives = 41/125 (32%), Gaps = 10/125 (8%)
Query: 156 GSYQVQLFSVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPSYPASIYTHY 215
+ D + + + P K V T+LL+ W PA +Y
Sbjct: 3 HHHHHHSSDYKDDDDK-GENLYFQGSVSDVPTKLEVVAATPTSLLISWDA--PAVTVRYY 59
Query: 216 KVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTVS----EDEISTPTT 271
+++ V P + A GL PG Y I+V V+ S P +
Sbjct: 60 RITYGETGGNSPVQEFT---VPGSKSTATISGLKPGVDYTITVYAVTGLRLMLAGSKPIS 116
Query: 272 AQYRT 276
YRT
Sbjct: 117 INYRT 121
Score = 44.5 bits (105), Expect = 5e-06
Identities = 18/98 (18%), Positives = 38/98 (38%), Gaps = 5/98 (5%)
Query: 87 TTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAG 146
+ D PT L V + + I W P + +++ +P + +
Sbjct: 26 GSVSDVPTKLEVVAATPTSLLISWDAP-AVTVRYYRITYGETGGNSPVQEF-TVPGSKST 83
Query: 147 YSLKDLTPGGSYQVQLFSVYDSKESVAYT---SRNFTT 181
++ L PG Y + +++V + +A + S N+ T
Sbjct: 84 ATISGLKPGVDYTITVYAVTGLRLMLAGSKPISINYRT 121
Score = 43.3 bits (102), Expect = 1e-05
Identities = 18/107 (16%), Positives = 37/107 (34%), Gaps = 6/107 (5%)
Query: 254 YNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKGFSEFDKYQ 313
++ +D+ ++ P + T SL + W+ P Y+
Sbjct: 5 HHHHSSDYKDDDDKGENLYFQGSVSDVPTKLEVV--AATPTSLLISWDAPAV--TVRYYR 60
Query: 314 VSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRTYQVLVKTVSGK 360
++ + T + + +S GL+PG Y + V V+G
Sbjct: 61 ITYGETGGNSPVQEFTVPGSK-STATIS-GLKPGVDYTITVYAVTGL 105
>3lpw_A A77-A78 domain from titin; intracellular FNIII-tandem, structural
protein; 1.65A {Homo sapiens}
Length = 197
Score = 48.1 bits (115), Expect = 7e-07
Identities = 36/200 (18%), Positives = 66/200 (33%), Gaps = 21/200 (10%)
Query: 88 TPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPA-G 146
P PP +L V + + + W PP+ S K ++ E T N
Sbjct: 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKIKNYIVEKRESTRKAYSTVATNCHKTS 63
Query: 147 YSLKDLTPGGSYQVQLF---SVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLW 203
+ + L G SY ++ + S + +P PGK + ++ + W
Sbjct: 64 WKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLMDVTRNSVSLSW 123
Query: 204 QPSYPASIY----THYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQ 259
+ P Y V + + + + +A GL+ G Y+ V
Sbjct: 124 EK--PEHDGGSRILGYIVEMQTKGSDKWATCATVKVT-----EATITGLIQGEEYSFRVS 176
Query: 260 TVSED------EISTPTTAQ 273
+E ++S P A+
Sbjct: 177 AQNEKGISDPRQLSVPVIAK 196
Score = 44.3 bits (105), Expect = 1e-05
Identities = 36/186 (19%), Positives = 58/186 (31%), Gaps = 24/186 (12%)
Query: 181 TKPNTPGKFIVWFRNETTLLVLWQPSY---PASIYTHYKVSIDPPDAPESVLYVEKEGEP 237
P P V +T++ + W P + I +Y V
Sbjct: 4 DTPGPPQDLKVKEVTKTSVTLTWDPPLLDGGSKI-KNYIVEKRESTRKAY----STVATN 58
Query: 238 PGPAQAAFKGLVPGRAYNISVQTVSED------EISTPTTAQYRTIPLRPLSFTYDKASI 291
L G +Y V +E E + A R +P ++ +
Sbjct: 59 CHKTSWKVDQLQEGCSYYFRVLAENEYGIGLPAETAESVKASERPLPPGKITLM----DV 114
Query: 292 TSNSLRVVWEPPK--GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRT 349
T NS+ + WE P+ G S Y V + S T + + T+ ++ GL G
Sbjct: 115 TRNSVSLSWEKPEHDGGSRILGYIVE---MQTKGSDKWATCATVKVTEATIT-GLIQGEE 170
Query: 350 YQVLVK 355
Y V
Sbjct: 171 YSFRVS 176
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 45.5 bits (108), Expect = 1e-06
Identities = 17/98 (17%), Positives = 36/98 (36%), Gaps = 5/98 (5%)
Query: 87 TTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAG 146
++ PT L V + + I W S S +++ +P + +
Sbjct: 2 SSVSSVPTKLEVVAATPTSLLISWDAS-SSSVSYYRITYGETGGNSPVQEF-TVPGSSST 59
Query: 147 YSLKDLTPGGSYQVQLFSVYDSKESVAYT---SRNFTT 181
++ L+PG Y + +++ Y + S N+ T
Sbjct: 60 ATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINYRT 97
Score = 44.7 bits (106), Expect = 2e-06
Identities = 23/101 (22%), Positives = 39/101 (38%), Gaps = 9/101 (8%)
Query: 180 TTKPNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPG 239
++ + P K V T+LL+ W +S ++Y+++ V P
Sbjct: 2 SSVSSVPTKLEVVAATPTSLLISWDA--SSSSVSYYRITYGETGGNSPVQEFT---VPGS 56
Query: 240 PAQAAFKGLVPGRAYNISVQTVSE----DEISTPTTAQYRT 276
+ A GL PG Y I+V +P++ YRT
Sbjct: 57 SSTATISGLSPGVDYTITVYAYYSYYDLYYSYSPSSINYRT 97
Score = 36.2 bits (84), Expect = 0.002
Identities = 13/71 (18%), Positives = 23/71 (32%), Gaps = 4/71 (5%)
Query: 290 SITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRT 349
+ T SL + W+ Y+++ + T + +S GL PG
Sbjct: 15 AATPTSLLISWDASSS--SVSYYRITYGETGGNSPVQEFTVPGSS-STATIS-GLSPGVD 70
Query: 350 YQVLVKTVSGK 360
Y + V
Sbjct: 71 YTITVYAYYSY 81
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein; NMR
{Homo sapiens} PDB: 2h45_A
Length = 95
Score = 45.6 bits (108), Expect = 1e-06
Identities = 16/94 (17%), Positives = 35/94 (37%), Gaps = 5/94 (5%)
Query: 183 PNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQ 242
V ++ +V W + + ++V + + + Y++ P
Sbjct: 6 HLVATSESVTEITASSFVVSWVS--ASDTVSGFRVEYELSEEGDEPQYLD---LPSTATS 60
Query: 243 AAFKGLVPGRAYNISVQTVSEDEISTPTTAQYRT 276
L+PGR Y ++V +SED + + +T
Sbjct: 61 VNIPDLLPGRKYIVNVYQISEDGEQSLILSTSQT 94
Score = 42.5 bits (100), Expect = 1e-05
Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 2/94 (2%)
Query: 88 TPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAGY 147
T+ SV + + + W S SGF+++ E P+ + +
Sbjct: 4 GSHLVATSESVTEITASSFVVSWVSA-SDTVSGFRVEYELSEEGDEPQYL-DLPSTATSV 61
Query: 148 SLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTT 181
++ DL PG Y V ++ + + E S + TT
Sbjct: 62 NIPDLLPGRKYIVNVYQISEDGEQSLILSTSQTT 95
Score = 37.5 bits (87), Expect = 6e-04
Identities = 15/70 (21%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 290 SITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRT 349
IT++S V W ++V + G + + L PGR
Sbjct: 16 EITASSFVVSWVSASD--TVSGFRVEYELSEEGDEPQYLDLPSTATSV--NIPDLLPGRK 71
Query: 350 YQVLVKTVSG 359
Y V V +S
Sbjct: 72 YIVNVYQISE 81
>1cfb_A Drosophila neuroglian; neural adhesion molecule; HET: NAG; 2.00A
{Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
Length = 205
Score = 47.8 bits (114), Expect = 1e-06
Identities = 26/188 (13%), Positives = 49/188 (26%), Gaps = 23/188 (12%)
Query: 89 PPDPPTNLSVNVRSGKTAQIFWSPPISG--KYSGFKLKVISLSEKTPPRIIGFTENPPAG 146
P+ P + ++ A+I W + ++ +
Sbjct: 5 VPNAPKLTGITCQA-DKAEIHWEQQGDNRSPILHYTIQFNTSFTPASWDAAYEKVPNTDS 63
Query: 147 YSLKDLTPGGSYQVQLFSVY------DSKESVAYTSRNFTTKPNT----PGKFIVWFRNE 196
+ ++P +Y F V S S S + TT+P+ P +
Sbjct: 64 SFVVQMSPWANYT---FRVIAFNKIGASPPSA--HSDSCTTQPDVPFKNPDNVVGQGTEP 118
Query: 197 TTLLVLWQP---SYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRA 253
L++ W P + HY VS + +
Sbjct: 119 NNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAA--WENNNIFDWRQNNIVIADQPTFVK 176
Query: 254 YNISVQTV 261
Y I V +
Sbjct: 177 YLIKVVAI 184
Score = 38.5 bits (90), Expect = 0.001
Identities = 26/173 (15%), Positives = 51/173 (29%), Gaps = 15/173 (8%)
Query: 195 NETTLLVLWQPSY--PASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGR 252
+ W+ + I HY + + P S + + P + + P
Sbjct: 17 QADKAEIHWEQQGDNRSPI-LHYTIQFNTSFTPAS--WDAAYEKVPNTDSSFVVQMSPWA 73
Query: 253 AYNISVQTVSEDEISTP--TTAQYRTIPLRPLSFTYD--KASITSNSLRVVWEPPK---G 305
Y V ++ S P + T P P + N+L + W P
Sbjct: 74 NYTFRVIAFNKIGASPPSAHSDSCTTQPDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEH 133
Query: 306 FSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMS-EGLEPGRTYQVLVKTV 357
+ Y VS +R ++ + + Q ++ Y + V +
Sbjct: 134 NAPNFHYYVSW--KRDIPAAAWENNNIFDWRQNNIVIADQPTFVKYLIKVVAI 184
Score = 32.0 bits (73), Expect = 0.22
Identities = 17/140 (12%), Positives = 31/140 (22%), Gaps = 18/140 (12%)
Query: 31 DYIPAHGHPPPNTTYVSRDIKDNIEFSEGLPGTKYDFYLYYTNST-VHDWLTWTASITT- 88
+ A+ P + + P Y F + N + S TT
Sbjct: 50 SWDAAYEKVPNTDSSFVVQMS---------PWANYTFRVIAFNKIGASPPSAHSDSCTTQ 100
Query: 89 ---PPDPPTNLSVNVRSGKTAQIFWSPPIS----GKYSGFKLKVISLSEKTPPRIIGFTE 141
P P N+ I W+P + + +
Sbjct: 101 PDVPFKNPDNVVGQGTEPNNLVISWTPMPEIEHNAPNFHYYVSWKRDIPAAAWENNNIFD 160
Query: 142 NPPAGYSLKDLTPGGSYQVQ 161
+ D Y ++
Sbjct: 161 WRQNNIVIADQPTFVKYLIK 180
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion receptor;
2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 2vkx_A
1lwr_A
Length = 209
Score = 47.5 bits (113), Expect = 2e-06
Identities = 33/201 (16%), Positives = 59/201 (29%), Gaps = 15/201 (7%)
Query: 88 TPPDPPTNLSVNVRSGKTAQIFWSPPIS---GKYSGFKLKVISLSEKTPPRIIGFTENPP 144
P P+ V S TAQ+ + P + +K + ++ E+ +
Sbjct: 7 DTPSSPSIDQVEPYSS-TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 65
Query: 145 AG--YSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNT----PGKFIVWFRNETT 198
++ L P +Y V+L ++ + F T+P P + +
Sbjct: 66 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNS 125
Query: 199 LLVLWQ-PSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNIS 257
+ V S HY V + P G K L Y +
Sbjct: 126 IKVNLIKQDDGGSPIRHYLVRYRALSSEWKPEIRL----PSGSDHVMLKSLDWNAEYEVY 181
Query: 258 VQTVSEDEISTPTTAQYRTIP 278
V ++ S +RT
Sbjct: 182 VVAENQQGKSKAAHFVFRTAA 202
Score = 42.5 bits (100), Expect = 6e-05
Identities = 31/181 (17%), Positives = 54/181 (29%), Gaps = 10/181 (5%)
Query: 181 TKPNTPGKFIVWFRNETTLLVLWQPSYP--ASIYTHYKVSIDPPDAPESVLYVEKEGEPP 238
P++P V + T + +P I YK E
Sbjct: 7 DTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPI-LKYKAEWRAVGEEVWHSKWYDAKEAS 65
Query: 239 GPAQAAFKGLVPGRAYNISVQTVSEDEISTPTTA-QYRTIPLRPLSFTYD--KASITSNS 295
GL P Y + + ++ + + A +++T P+R S + NS
Sbjct: 66 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNS 125
Query: 296 LRVVWEPPK-GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRTYQVLV 354
++V G S Y V R + P + + L+ Y+V V
Sbjct: 126 IKVNLIKQDDGGSPIRHYLVRY--RALSSEWKPEIRLPSGSDHVMLK-SLDWNAEYEVYV 182
Query: 355 K 355
Sbjct: 183 V 183
Score = 35.2 bits (81), Expect = 0.018
Identities = 20/115 (17%), Positives = 34/115 (29%), Gaps = 9/115 (7%)
Query: 58 EGL-PGTKYDFYLYYTN----STVHDWLTWTASITTPPDPPTNLSVNVRSGKTAQIFWSP 112
GL P T Y L N + + P P G + ++
Sbjct: 73 VGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVREPSAPKLEGQMGEDGNSIKVNLIK 132
Query: 113 PISG--KYSGFKLKVISLSEKTPPRIIGFTENPPAGYSLKDLTPGGSYQVQLFSV 165
G + ++ +LS + P I + LK L Y+V + +
Sbjct: 133 QDDGGSPIRHYLVRYRALSSEWKPEIR--LPSGSDHVMLKSLDWNAEYEVYVVAE 185
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 48.3 bits (114), Expect = 2e-06
Identities = 34/275 (12%), Positives = 72/275 (26%), Gaps = 13/275 (4%)
Query: 85 SITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLS-EKTPPRIIGFTENP 143
+P P L N + + + K + K II T +
Sbjct: 7 GYISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASS 66
Query: 144 PAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLW 203
+ L + + F +++V + P P + W
Sbjct: 67 VTFTDIASLNIQLTCNILTFG--QLEQNVYGITIISGLPPEKPKNLSCIVNEGKKMRCEW 124
Query: 204 QPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAF-KGLVPGRAYNISVQTVS 262
+ T++ + + + + + + P V + V+ +
Sbjct: 125 DGGRETHLETNFTLKSEWATHKFA----DCKAKRDTPTSCTVDYSTVYFVNIEVWVEAEN 180
Query: 263 EDEISTPT----TAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKGFSEFD-KYQVSIN 317
T Y+ P P + + + S+ L++ W P S KY +
Sbjct: 181 ALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVIILKYNIQYR 240
Query: 318 VRRPGASSTPITKSRDEPTQCDMSEGLEPGRTYQV 352
+ S + + L+P Y
Sbjct: 241 TKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVF 275
Score = 40.2 bits (93), Expect = 6e-04
Identities = 41/229 (17%), Positives = 67/229 (29%), Gaps = 11/229 (4%)
Query: 39 PPPNTTYVSRDIKDNIEFSEGLPGTKYDFYLYYTNSTVHDWLTWTASITTPPDPPTNLSV 98
P T ++R + + + T PP+ P NLS
Sbjct: 53 PKEQYTIINRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIISGLPPEKPKNLSC 112
Query: 99 NVRSGKTAQIFWSPP-ISGKYSGFKLKVISLSEKTPPRIIGFTENPPAGYSLKDLTPGGS 157
V GK + W + + F LK + K + P + +
Sbjct: 113 IVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFAD-CKAKRDTPTSCTVDYSTVYFVN 171
Query: 158 YQVQLFSVYDSKESVAYTSRNFTT----KPNTPGKFIVWFRNET--TLLVLWQ-PSYPAS 210
+V + + ++ V NF KPN P V E L + W PS +
Sbjct: 172 IEVWVEAE-NALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSV 230
Query: 211 IYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQ 259
I Y + DA + E + + L P Y ++
Sbjct: 231 IILKYNIQYRTKDASTWS-QIPPEDTASTRSSFTVQDLKPFTEYVFRIR 278
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein; HET:
NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 44.9 bits (106), Expect = 3e-06
Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 14/108 (12%)
Query: 183 PNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQ 242
+ P V T+LL+ W Y +Y+++ V P
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDS--GRGSYQYYRITYGETGGNSPVQEFT---VPGPVHT 58
Query: 243 AAFKGLVPGRAYNISVQTVSED---------EISTPTTAQYRTIPLRP 281
A GL PG Y I+V V++ +P + YRT +P
Sbjct: 59 ATISGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKP 106
Score = 41.0 bits (96), Expect = 6e-05
Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 10/105 (9%)
Query: 90 PDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAGYSL 149
D P +L V + + I W G Y +++ +P + P ++
Sbjct: 4 SDVPRDLEVVAATPTSLLISWDSG-RGSYQYYRITYGETGGNSPVQEF-TVPGPVHTATI 61
Query: 150 KDLTPGGSYQVQLFSVYDSKESVAY--------TSRNFTTKPNTP 186
L PG Y + +++V D K S N+ T+ + P
Sbjct: 62 SGLKPGVDYTITVYAVTDHKPHADGPHTYHESPISINYRTEIDKP 106
Score = 39.1 bits (91), Expect = 3e-04
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 4/70 (5%)
Query: 290 SITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRT 349
+ T SL + W+ +G + Y+++ + T + GL+PG
Sbjct: 14 AATPTSLLISWDSGRG--SYQYYRITYGETGGNSPVQEFTVPGPV-HTATI-SGLKPGVD 69
Query: 350 YQVLVKTVSG 359
Y + V V+
Sbjct: 70 YTITVYAVTD 79
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 47.7 bits (112), Expect = 3e-06
Identities = 50/367 (13%), Positives = 97/367 (26%), Gaps = 27/367 (7%)
Query: 18 PENLSSDNSTYRLDYIPAHGHPPPNTTYVSRDIKDNIEFSEGL--PGTKYDFYLYYTNST 75
+ S N T+ DY + FS + +
Sbjct: 29 RSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNFSSLKLNVYEEIKLRIRAEKEN 88
Query: 76 VHDW---LTWTASITTPPDPPTNLSVNVRSGKTA-QIFWSPPISGKYS----GFKLKVIS 127
W ++T PP V++ + A I SP G
Sbjct: 89 TSSWYEVDSFTPFRKAQIGPP---EVHLEAEDKAIVIHISPGTKDSVMWALDGLSFTYSL 145
Query: 128 LSEKTPPRIIGFTENPPAGYSLKDLTPGGSYQVQLFSVYD-----SKESVAYTSRNFTTK 182
+ K + EN + + + L+P +Y +++ + S + +
Sbjct: 146 VIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSWKIGVYSPVHCIKTTVEN 205
Query: 183 PNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQ 242
P + I ++ W +Y + + P + LY K+ +
Sbjct: 206 ELPPPENIEVSVQNQNYVLKWDYTYANMTFQVQWLHAFLKRNPGNHLYKWKQIPDCENVK 265
Query: 243 AAF----KGLVPGRAYNISVQTVSEDEISTPTTAQY-RTIPLRPLSFTYDKASITSNSLR 297
+ + Y + VQ + S + T L S+S
Sbjct: 266 TTQCVFPQNVFQKGIYLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSDSFH 325
Query: 298 VVWEPPK---GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRTYQVLV 354
+ PK Y + + +S K ++ T L+P Y V
Sbjct: 326 IYIGAPKQSGNTPVIQDYPLIYEIIFWENTSNAERKIIEKKTDV-TVPNLKPLTVYCVKA 384
Query: 355 KTVSGKP 361
+ +
Sbjct: 385 RAHTMDE 391
Score = 38.4 bits (88), Expect = 0.003
Identities = 29/283 (10%), Positives = 76/283 (26%), Gaps = 17/283 (6%)
Query: 92 PPTNLSVNVRSGKTAQIFWSPPISGKYSG---FKLKVISLSEKTPPRIIGFTENPPAGYS 148
P + V++ + W+ + F + + + +S
Sbjct: 10 SPQKVEVDIIDDNFI-LRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITSTKCNFS 68
Query: 149 LKDLTPGGSY--QVQLFSVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPS 206
L +++ S + F P + + ++ ++ + +
Sbjct: 69 SLKLNVYEEIKLRIRAEKENTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIHISPGT 128
Query: 207 YPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTVSED-- 264
+ ++ +S +E ++ L P Y + V+
Sbjct: 129 KDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSRHKIYKLSPETTYCLKVKAALLTSW 188
Query: 265 ---EISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKGF-SEFDKYQVSINVRR 320
S + P + + N + + W+ + ++ + R
Sbjct: 189 KIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYV-LKWDYTYANMTFQVQWLHAFLKRN 247
Query: 321 PGASSTPITKSRD----EPTQCDMSEGLEPGRTYQVLVKTVSG 359
PG + D + TQC + + Y + V+ G
Sbjct: 248 PGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDG 290
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 47.5 bits (113), Expect = 3e-06
Identities = 28/198 (14%), Positives = 59/198 (29%), Gaps = 8/198 (4%)
Query: 86 ITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPR-IIGFTENPP 144
+ P P + + S TA++ ++ P S + + E I +
Sbjct: 192 LADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQ 251
Query: 145 AGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTPG---KFIVWFRNETTLLV 201
L +L P +Y++++ +V + F T P + + +
Sbjct: 252 TMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIEIFQTLPVREPSPPSIHGQPSSGKSFKL 311
Query: 202 LWQP-SYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQT 260
+ Y V D + L + +G + L Y + +
Sbjct: 312 SITKQDDGGAPILEYIVKYRSKDKEDQWLEKKVQGNKD---HIILEHLQWTMGYEVQITA 368
Query: 261 VSEDEISTPTTAQYRTIP 278
+ S PT ++ P
Sbjct: 369 ANRLGYSEPTVYEFSMPP 386
Score = 40.9 bits (96), Expect = 5e-04
Identities = 29/206 (14%), Positives = 62/206 (30%), Gaps = 15/206 (7%)
Query: 156 GSYQVQLFSVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPSYPA--SIYT 213
G Y + ++ + P++P + ++TT V +
Sbjct: 171 GRYNCTATNHIGTRFQEYILAL--ADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIH 228
Query: 214 HYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTVSEDEISTPTTA- 272
HY+V + + + L P Y I V V+ +
Sbjct: 229 HYQVDVKEVASEIW----KIVRSHGVQTMVVLNNLEPNTTYEIRVAAVNGKGQGDYSKIE 284
Query: 273 QYRTIPLRPLSFTYDKA-SITSNSLRVVWEPPK-GFSEFDKYQVSINVRRPGASSTPITK 330
++T+P+R S + S ++ G + +Y V R +
Sbjct: 285 IFQTLPVREPSPPSIHGQPSSGKSFKLSITKQDDGGAPILEYIVK---YRSKDKEDQWLE 341
Query: 331 SRDEPTQCD-MSEGLEPGRTYQVLVK 355
+ + + + E L+ Y+V +
Sbjct: 342 KKVQGNKDHIILEHLQWTMGYEVQIT 367
>2ibg_A CG9211-PA, GH03927P; IHOG, fibronectin type III, protein binding;
2.20A {Drosophila melanogaster} SCOP: b.1.2.1 b.1.2.1
PDB: 2ibb_A
Length = 214
Score = 46.3 bits (110), Expect = 3e-06
Identities = 32/217 (14%), Positives = 64/217 (29%), Gaps = 35/217 (16%)
Query: 90 PDPPTNLSVNVRSGKTAQIFWSPPISG-----------KYSGFKLKVISLSEKTPPRIIG 138
PPT +V S ++ + W P + + G + + ++ P
Sbjct: 2 TYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKPK 61
Query: 139 FTENPPAG--YSLKDLTPGGSYQVQLFSVYD------SKESVAYTSRNFTTK--PNTPGK 188
+ S+ DL P +Y+ ++ +VY S S + + P
Sbjct: 62 WNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPEL 121
Query: 189 FIVWFRNETTLLVLWQPSYPASIY----THYKVSIDPPDAPESVLYVEKEGEPPGPAQAA 244
+ +ET +++ W + T Y P + Y + E
Sbjct: 122 LEIEEYSETAVVLHWSL--ASDADEHLITGYYAYYRPSSSAGE--YFKATIEGAHARSFK 177
Query: 245 FKGLVPGRAYNISVQTVSED------EISTPTTAQYR 275
L Y +Q+ S + T + +
Sbjct: 178 IAPLETATMYEFKLQSFSAASASEFSALKQGRTQRPK 214
Score = 37.9 bits (88), Expect = 0.002
Identities = 24/162 (14%), Positives = 38/162 (23%), Gaps = 13/162 (8%)
Query: 35 AHGHPPPNTTYVSRDIKDNIEFSEGL-PGTKYDFYLYYTNS--------TVHDWLTWTAS 85
P + S K L P Y F + S T + +
Sbjct: 52 NDNIPYGKPKWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGA 111
Query: 86 ITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYS---GFKLKVISLSEKTPPRIIGFTEN 142
P P L + S + WS G+ S
Sbjct: 112 ALDPMPVPELLEIEEYSETAVVLHWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGA 171
Query: 143 PPAGYSLKDLTPGGSYQVQLFSVYDSKESVA-YTSRNFTTKP 183
+ + L Y+ +L S + S + T +P
Sbjct: 172 HARSFKIAPLETATMYEFKLQSFSAASASEFSALKQGRTQRP 213
Score = 33.2 bits (76), Expect = 0.077
Identities = 14/121 (11%), Positives = 31/121 (25%), Gaps = 10/121 (8%)
Query: 246 KGLVPGRAYNISVQTVSEDEISTP--TTAQYRTIPLRPLSFTY-----DKASITSNSLRV 298
L P Y + V + + T+A++ P L + + ++ +
Sbjct: 75 TDLKPQHTYRFRILAVYSNNDNKESNTSAKFYLQPGAALDPMPVPELLEIEEYSETAVVL 134
Query: 299 VWEPPK--GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRTYQVLVKT 356
W Y T ++ LE Y+ +++
Sbjct: 135 HWSLASDADEHLITGYYAYYRPSSSAGEYFKATIEGAHARSFKIA-PLETATMYEFKLQS 193
Query: 357 V 357
Sbjct: 194 F 194
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 43.9 bits (104), Expect = 5e-06
Identities = 18/87 (20%), Positives = 27/87 (31%), Gaps = 5/87 (5%)
Query: 195 NETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAY 254
TT +V WQP P V+ + P V+ L P Y
Sbjct: 14 TLTTAVVTWQP--PILPIEGILVTFGRKNDPSDETTVDL---TSSITSLTLTNLEPNTTY 68
Query: 255 NISVQTVSEDEISTPTTAQYRTIPLRP 281
I + + + S P + + T L
Sbjct: 69 EIRIVARNGQQYSPPVSTTFTTGSLEH 95
Score = 43.1 bits (102), Expect = 8e-06
Identities = 21/95 (22%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 91 DPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAG--YS 148
PP N+ V + TA + W PP G +++ K P + + +
Sbjct: 3 QPPFNIKVTNITLTTAVVTWQPP-ILPIEGI---LVTFGRKNDPSDETTVDLTSSITSLT 58
Query: 149 LKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKP 183
L +L P +Y++++ + + S S FTT
Sbjct: 59 LTNLEPNTTYEIRIVARNGQQYSPP-VSTTFTTGS 92
Score = 38.5 bits (90), Expect = 3e-04
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 4/71 (5%)
Query: 290 SITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRT 349
+IT + V W+PP + V+ + + T + + T ++ LEP T
Sbjct: 12 NITLTTAVVTWQPPI--LPIEGILVTFGRKNDPSDETTVDLTSSI-TSLTLT-NLEPNTT 67
Query: 350 YQVLVKTVSGK 360
Y++ + +G+
Sbjct: 68 YEIRIVARNGQ 78
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 45.0 bits (106), Expect = 1e-05
Identities = 22/176 (12%), Positives = 47/176 (26%), Gaps = 10/176 (5%)
Query: 183 PNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQ 242
P P + W + T++ + + + + + + P
Sbjct: 8 PEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKSEWATHKFA----DCKAKRDTPTS 63
Query: 243 AAF-KGLVPGRAYNISVQTVSEDEISTPT----TAQYRTIPLRPLSFTYDKASITSNSLR 297
V + V+ + T Y+ P P + + + S+ L+
Sbjct: 64 CTVDYSTVYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILK 123
Query: 298 VVWEPPKGFSEFD-KYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRTYQV 352
+ W P S KY + + S + + L+P Y
Sbjct: 124 LTWTNPSIKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVF 179
Score = 41.1 bits (96), Expect = 2e-04
Identities = 43/212 (20%), Positives = 67/212 (31%), Gaps = 18/212 (8%)
Query: 88 TPPDPPTNLSVNVRSGKTAQIFWSPPIS-GKYSGFKLKVISLSEKTPPRIIGFTENPPAG 146
PP+ P NLS V GK + W + F LK + + P +
Sbjct: 6 LPPEKPKNLSCIVNEGKKMRCEWDGGRETHLETNFTLKS-EWATHKFADCKAKRDTPTSC 64
Query: 147 YSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTT----KPNTPGKFIVWFRNET--TLL 200
+ +V + + ++ V NF KPN P V E L
Sbjct: 65 TVDYSTVYFVNIEVWVEAE-NALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILK 123
Query: 201 VLWQ-PSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQ 259
+ W PS + I Y + DA + E + + L P Y ++
Sbjct: 124 LTWTNPSIKSVIILKYNIQYRTKDASTWS-QIPPEDTASTRSSFTVQDLKPFTEYVFRIR 182
Query: 260 TVSED------EISTPTTAQ-YRTIPLRPLSF 284
+ ED + S + Y P + SF
Sbjct: 183 CMKEDGKGYWSDWSEEASGITYEDRPSKEPSF 214
Score = 33.0 bits (75), Expect = 0.083
Identities = 17/110 (15%), Positives = 39/110 (35%), Gaps = 8/110 (7%)
Query: 60 LPGTKYDFYLYYTN---STVHDWLTWTASITTPPDPPTNLSVNVRSGKTA--QIFWSPPI 114
+ + ++ N D + + P+PP NLSV ++ ++ W+ P
Sbjct: 71 VYFVNIEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPS 130
Query: 115 SGKYS--GFKLKVISLSEKTPPRIIGFTENPPAG-YSLKDLTPGGSYQVQ 161
+ ++ + T +I ++++DL P Y +
Sbjct: 131 IKSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFR 180
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 45.6 bits (107), Expect = 1e-05
Identities = 43/289 (14%), Positives = 74/289 (25%), Gaps = 32/289 (11%)
Query: 89 PPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAGYS 148
PP N ++ V + W P + L+ + P+ + +
Sbjct: 11 SLLPPVNFTIKVTGLAQVLLQWKPNPDQEQRNVNLEY--QVKINAPKEDDYETRITESKA 68
Query: 149 LKDLTPGGSYQVQLFSVYD-SKESVAYTSRNFTTKPNTPGKFIVWF-------------- 193
+ L G S V+ D S + ++ S P +PG IV
Sbjct: 69 VTILHMGFSASVRTILQNDHSLLASSWASAELHAPPGSPGTSIVNLTCTTNTTEDNYSRL 128
Query: 194 -RNETTLLVLWQPSYPASIYTHYKVSI-DPPDAPESVLYVEKEGEPPGPAQAAFKGLVPG 251
+ +L W A T Y + E Y ++
Sbjct: 129 RSYQVSLHCTWMVGTDAPEDTQYFLYYRYGSWTEECQEYSMDTLGRNIACWFPRTFILSK 188
Query: 252 RA--YNISVQTVSEDEISTPTTAQYRT----IPLRPLSFTYDKASITSNSLRVVWEPPKG 305
+ V S+ P + PL+ T A I + + WE P
Sbjct: 189 GRDWLAVLVNGSSKHSAIRPFDQLFALHAIDQINPPLNVT---AEIEGTRMSIQWEKPVS 245
Query: 306 FSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRTYQVLV 354
+ + + I K ++ Y V V
Sbjct: 246 AFPIHCFDYEVKIHNTRNGYLQIEKLMTNAFIS----IIDDLSKYDVQV 290
Score = 30.2 bits (67), Expect = 0.95
Identities = 12/88 (13%), Positives = 26/88 (29%), Gaps = 9/88 (10%)
Query: 78 DWLTWTASITTPPDPPTNLSVNVRSGKTAQIFWSPPIS---GKYSGFKLKVISLSEKTPP 134
+ +PP N++ + I W P+S +++K+ +
Sbjct: 209 FDQLFALHAIDQINPPLNVTAEIEGT-RMSIQWEKPVSAFPIHCFDYEVKIHNTRNGYLQ 267
Query: 135 RIIGFTENPPAGYSLKDLTPGGSYQVQL 162
E + + Y VQ+
Sbjct: 268 -----IEKLMTNAFISIIDDLSKYDVQV 290
>3lb6_C IL-13, interleukin-13 receptor subunit alpha-2; cytokine, decoy,
decoy receptor, glycoprotein; HET: MLY NAG; 3.05A {Homo
sapiens} PDB: 3lb6_D*
Length = 380
Score = 45.9 bits (108), Expect = 1e-05
Identities = 44/299 (14%), Positives = 86/299 (28%), Gaps = 36/299 (12%)
Query: 81 TWTASITTPPDPPTNLSVNVRSGKTAQIF--WSPP-----ISGKYSGFKLKVISLSEKTP 133
T ++ +PP + + V G ++ W PP ++LK ++ +T
Sbjct: 23 TSSSDTEIKVNPPQDFEI-VDPGYLGYLYLQWQPPLSLDHFKECTVEYELKYRNIGSETW 81
Query: 134 PRIIGFTENPPAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTS---------RNFTTKPN 184
II T+N DL G + + S
Sbjct: 82 KTII--TKNLHY-KDGFDLNKGIEAXIHTLLPWQCTNGSEVQSSWAETTYWISPQGIPET 138
Query: 185 TPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSI--DPPDAPESVLYVEKEGEPPGPAQ 242
+ N LL W+P + T+Y + + D + K +
Sbjct: 139 XVQDMDCVYYNWQYLLCSWKPGIGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGCR 198
Query: 243 AAFKGLVPGRAYNISVQ------TVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSL 296
+ + + I V + + + +P L+FT +S +
Sbjct: 199 FPYLEASDYKDFYICVNGSSENKPIRSSYFTFQLQNIVKPLPPVYLTFT----RESSCEI 254
Query: 297 RVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRTYQVLVK 355
++ W P G + I +R + T + T + R +V+
Sbjct: 255 KLKWSIPLGPIPARCFDYEIEIREDDTTLVTATVENETYT----LKTTNETRQLCFVVR 309
Score = 35.5 bits (81), Expect = 0.020
Identities = 20/152 (13%), Positives = 39/152 (25%), Gaps = 11/152 (7%)
Query: 18 PENLSSDNSTYRLDYIPAHGHP----PPNTTYVSRDIKDNIEFSEGLPGTKYDFYLYYTN 73
P ++ Y L Y ++I + E + + ++
Sbjct: 159 PGIGVLLDTNYNLFYWYEGLDHALQCVDYIKADGQNIGCRFPYLEASDYKDFYICVNGSS 218
Query: 74 ---STVHDWLTWTASITTPPDPPTNLSVNVRSGKTAQIFWSPPIS-GKYSGFKLKVISLS 129
+ T+ P PP L+ S ++ WS P+ F ++
Sbjct: 219 ENKPIRSSYFTFQLQNIVKPLPPVYLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIRE 278
Query: 130 EKTPPRIIGFTENPPAGYSLKDLTPGGSYQVQ 161
+ T Y+LK
Sbjct: 279 DDTTLVTATVENET---YTLKTTNETRQLCFV 307
Score = 31.3 bits (70), Expect = 0.53
Identities = 22/197 (11%), Positives = 51/197 (25%), Gaps = 19/197 (9%)
Query: 74 STVHDWLTWTASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSG-----FKLKVISL 128
S+ + W + P ++ + + W P I + + +
Sbjct: 121 SSWAETTYWISPQGIPETXVQDMDCVYYNWQYLLCSWKPGIGVLLDTNYNLFYWYEGLDH 180
Query: 129 SEKTPPRIIGFTENPPAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTT----KPN 184
+ + I +N + + + + + + + + + + F KP
Sbjct: 181 ALQCVDYIKADGQNIGCRFPYLEASDYKDFYICV-NGSSENKPIRSSYFTFQLQNIVKPL 239
Query: 185 TPGKFIVWFRNETTLLVLWQPSYPASIYTH--YKVSIDPPDAPESVLYVEKEGEPPGPAQ 242
P + + + W Y++ I D VE E
Sbjct: 240 PPVYLTFTRESSCEIKLKWSIPLGPIPARCFDYEIEIREDDTTLVTATVENE-------T 292
Query: 243 AAFKGLVPGRAYNISVQ 259
K R V+
Sbjct: 293 YTLKTTNETRQLCFVVR 309
>3v6o_A Leptin receptor; receptor-antibody complex, cytokine receptor,
antibody FAB F immunoglobulin fold; HET: NAG; 1.95A
{Homo sapiens}
Length = 206
Score = 44.7 bits (105), Expect = 1e-05
Identities = 22/143 (15%), Positives = 45/143 (31%), Gaps = 5/143 (3%)
Query: 25 NSTYRLDYIPAHGHPPPNTTYVSRDIKDNIEFSEGLPGTKYDFYLYYTN---STVHDWLT 81
+S Y D H P Y+ D F + Y ++ + S
Sbjct: 42 SSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIFLLSGYTMWIRINHSLGSLDSPPTC 101
Query: 82 WTASITTPPDPPTNLSV-NVRSGKTAQIFWSPPISGKYS-GFKLKVISLSEKTPPRIIGF 139
P PP+++ + +I W P+ + + F+++ ++ ++
Sbjct: 102 VLPDSVVKPLPPSSVKAEITINIGLLKISWEKPVFPENNLQFQIRYGLSGKEVQWKMYEV 161
Query: 140 TENPPAGYSLKDLTPGGSYQVQL 162
+ SL Y VQ+
Sbjct: 162 YDAKSKSVSLPVPDLCAVYAVQV 184
Score = 34.7 bits (79), Expect = 0.027
Identities = 24/165 (14%), Positives = 46/165 (27%), Gaps = 15/165 (9%)
Query: 203 WQPSYPASIYT-----HYKVSIDPPDAPESVLYVEKEGEPPGPAQAA----FKGLVPGRA 253
W S S+ Y S S+ + + + + F+ +
Sbjct: 22 WSTSTIQSLAESTLQLRYHRSSLYCSDIPSIHPISEPKDCYLQSDGFYECIFQPIFLLSG 81
Query: 254 YNISVQTVSE--DEISTPT--TAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKGFSEF 309
Y + ++ S PT PL P S + +I L++ WE P
Sbjct: 82 YTMWIRINHSLGSLDSPPTCVLPDSVVKPLPPSSVKA-EITINIGLLKISWEKPVFPENN 140
Query: 310 DKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRTYQVLV 354
++Q+ + + + + Y V V
Sbjct: 141 LQFQIRYGLSGKEVQWKMYEVYDAKSKSVSLP-VPDLCAVYAVQV 184
>2q7n_A Leukemia inhibitory factor receptor; cytokine cell surface receptor
complex LIFR LIF, cytokine RE cytokine complex; HET: NAG
FUC MAN; 4.00A {Mus musculus}
Length = 488
Score = 45.3 bits (106), Expect = 2e-05
Identities = 47/335 (14%), Positives = 98/335 (29%), Gaps = 38/335 (11%)
Query: 42 NTTYVSRDIKDNIEFSEGLPGTKYDFYL---YYTNSTVHD----WLTWTASITTPPDPPT 94
NT +D + ++ LP + ++ +S W W+ T
Sbjct: 145 NTMLSGKDTVQHWNWTSDLPLQCATHSVSIRWHIDSPHFSGYKEWSDWSPLKNISWIRNT 204
Query: 95 NLSV-----NVRSGKTAQIFWSPP---ISGKYSGFKLKVISLSEKTPPRIIGFTENPPAG 146
+V V +G I P +SG+ +I L +T
Sbjct: 205 ETNVFPQDKVVLAGSNMTICCMSPTKVLSGQIGNTLRPLIHLYGQTV------------A 252
Query: 147 YSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPS 206
+ ++ + + ++ + + V T P+ P K + ++ W P
Sbjct: 253 IHILNIPVSENSGTNI--IFITDDDVYGTVVFAGYPPDVPQKLSCETHDLKEIICSWNPG 310
Query: 207 YPASIYTHYKVSIDPP--DAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQ---TV 261
+ + +S ++ EG + + +N ++ +
Sbjct: 311 RITGLVGPRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPL 370
Query: 262 SEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKGFSEFD-KYQVSINVRR 320
+ + + R P P S I S + W P F++ + Q+ I
Sbjct: 371 GQAQSAVVINVTERVAPHDPTSLKVK--DINSTVVTFSWYLPGNFTKINLLCQIEICKAN 428
Query: 321 PGASSTPITKSRDEPTQCDMS-EGLEPGRTYQVLV 354
T E + ++ + L P Y V
Sbjct: 429 SKKEVRNATIRGAEDSTYHVAVDKLNPYTAYTFRV 463
Score = 43.0 bits (100), Expect = 1e-04
Identities = 19/146 (13%), Positives = 41/146 (28%), Gaps = 6/146 (4%)
Query: 22 SSDNSTYRLDYIPAHGHPPPNTTYVSRDIKDNIEFSEGLPGTKYDFYLYYTNSTVHDWLT 81
N+ Y L + + + + ++F L N
Sbjct: 317 GPRNTEYTLFESISGKSAVFHRIEGLTNETYRLGVQMHPGQEIHNFTLTGRNPLGQAQSA 376
Query: 82 WTASIT--TPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKV----ISLSEKTPPR 135
++T P PT+L V + W P + ++ + ++
Sbjct: 377 VVINVTERVAPHDPTSLKVKDINSTVVTFSWYLPGNFTKINLLCQIEICKANSKKEVRNA 436
Query: 136 IIGFTENPPAGYSLKDLTPGGSYQVQ 161
I E+ ++ L P +Y +
Sbjct: 437 TIRGAEDSTYHVAVDKLNPYTAYTFR 462
Score = 31.5 bits (70), Expect = 0.45
Identities = 18/124 (14%), Positives = 38/124 (30%), Gaps = 8/124 (6%)
Query: 90 PDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAGYSL 149
D +L + + W P+ K I + + +
Sbjct: 4 DDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDRFHSCHPL------ETTNVKI 57
Query: 150 KDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNET-TLLVLWQPSYP 208
L+PG ++V + + + ++ + P TP + T +LL+ W
Sbjct: 58 PALSPG-DHEVTINYLNGFQSKFTLNEKDVSLIPETPEILDLSADFFTSSLLLKWNDRGS 116
Query: 209 ASIY 212
A +
Sbjct: 117 ALPH 120
Score = 28.8 bits (63), Expect = 3.2
Identities = 21/146 (14%), Positives = 27/146 (18%), Gaps = 11/146 (7%)
Query: 182 KPNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPA 241
K + N W S T + I P
Sbjct: 3 KDDDDKDLKCTTNNMRVWDCTWPAPLGVSPGTVKDICIKDR---------FHSCHPLETT 53
Query: 242 QAAFKGLVPGRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVW- 300
L PG T IP P TS SL + W
Sbjct: 54 NVKIPALSPGDHEVTINYLNGFQSKFTLNEKDVSLIPETPEILDLSADFFTS-SLLLKWN 112
Query: 301 EPPKGFSEFDKYQVSINVRRPGASST 326
+ I V + +
Sbjct: 113 DRGSALPHPSNATWEIKVLQNPRTEP 138
>2b5i_B Interleukin-2 receptor beta chain; four-helix bundle, fibronectin
domain, cytokine-cytokine REC complex; HET: NAG; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3qaz_B*
2erj_B*
Length = 214
Score = 44.0 bits (103), Expect = 2e-05
Identities = 26/184 (14%), Positives = 44/184 (23%), Gaps = 15/184 (8%)
Query: 20 NLSSDNSTYRLDYIPAHG----HPPPNTTYVSRDIKDNIEFSEGLPGTKYDFYLYYTN-- 73
+S D P ++ I + + +
Sbjct: 29 QDTSCQVHAWPDRRRWQQTCELLPVSQASWACNLILGAPDSQKLTTVDIVTLRVLCREGV 88
Query: 74 -STVHDWLTWTASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSG----FKLKVISL 128
V + P +L V I W + Y F+ + +S
Sbjct: 89 RWRVMAIQDFKPFENLRLMAPISLQVVHVETHRCNISWEISQASHYFERHLEFEARTLSP 148
Query: 129 SEKTPPRIIGFTENPPAGYSLKDLTPGGSYQVQLFSVYDSKESVAY----TSRNFTTKPN 184
+ + L+ LTP Y+ Q+ E + F TKP
Sbjct: 149 GHTWEEAPLLTLKQKQEWICLETLTPDTQYEFQVRVKPLQGEFTTWSPWSQPLAFRTKPA 208
Query: 185 TPGK 188
GK
Sbjct: 209 ALGK 212
>3s98_A Interferon alpha/beta receptor 1; human, type I interferons,
receptor chain, ifnar1, fibronect III, type I interferon
receptor chain; HET: NAG; 1.90A {Homo sapiens}
Length = 306
Score = 44.1 bits (103), Expect = 3e-05
Identities = 36/294 (12%), Positives = 80/294 (27%), Gaps = 31/294 (10%)
Query: 89 PPDPPTNLSVNVRSGKTAQIFWSPPI----SGKYSGFKLKVISLSEKTPPRIIGFTENPP 144
P P + V++ + W+ + +S K + T
Sbjct: 3 PLKSPQKVEVDIIDDNF-ILRWNRSDESVGNVTFSFDYQKTGMDNWIKLSGCQNITS-TK 60
Query: 145 AGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTPGKF--IVWFRNETTLLVL 202
+S L ++++ + + S Y +FT + + +++
Sbjct: 61 CNFSSLKLNVYEEIKLRIRAEKE-NTSSWYEVDSFTPFRKAQIGPPEVHLEAEDKAIVIH 119
Query: 203 WQPSYPAS-------IYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYN 255
P S + Y + I + L P Y
Sbjct: 120 ISPGTKDSVMWALDGLSFTYSLVIWKNSSGVEERIENIYSR------HKIYKLSPETTYC 173
Query: 256 ISVQTVSEDE----ISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKGFSEFD- 310
+ V+ + +P T+ + S+ + + + W+ F
Sbjct: 174 LKVKAALLTSWKIGVYSPVHCIKTTVENELPPPENIEVSVQNQNYVLKWDYTYANMTFQV 233
Query: 311 KYQVSINVRRPGASS---TPITKSRD-EPTQCDMSEGLEPGRTYQVLVKTVSGK 360
++ + R PG I + + TQC + + Y + V+ G
Sbjct: 234 QWLHAFLKRNPGNHLYKWKQIPDCENVKTTQCVFPQNVFQKGIYLLRVQASDGN 287
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 41.5 bits (97), Expect = 4e-05
Identities = 15/107 (14%), Positives = 35/107 (32%), Gaps = 7/107 (6%)
Query: 180 TTKPNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDA----PESVLYVEKEG 235
+ + V ++L + W+ P + + + P P +++E
Sbjct: 6 SGSRPRLSQLSVTDVTTSSLRLNWEA--PPGAFDSFLLRFGVPSPSTLEPHPRPLLQREL 63
Query: 236 EPPGPA-QAAFKGLVPGRAYNISVQTVSEDEISTPTTAQYRTIPLRP 281
PG A + L G Y++++ + + RT+
Sbjct: 64 MVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQGTARTLSGPS 110
Score = 38.4 bits (89), Expect = 4e-04
Identities = 17/111 (15%), Positives = 34/111 (30%), Gaps = 9/111 (8%)
Query: 83 TASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTEN 142
++ + + LSV + + ++ W P G + F L+ S T
Sbjct: 2 SSGSSGSRPRLSQLSVTDVTTSSLRLNWEAP-PGAFDSFLLRFGVPSPSTLEPHPRPLLQ 60
Query: 143 PPAG-------YSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTP 186
L+DL G Y + L+ + ++ + T
Sbjct: 61 RELMVPGTRHSAVLRDLRSGTLYSLTLYGLRGPHKADSIQG-TARTLSGPS 110
Score = 35.7 bits (82), Expect = 0.004
Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 8/75 (10%)
Query: 291 ITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSE------GL 344
+T++SLR+ WE P G FD + + V P + L
Sbjct: 20 VTTSSLRLNWEAPPG--AFDSFLLRFGVPSPSTLEPHPRPLLQRELMVPGTRHSAVLRDL 77
Query: 345 EPGRTYQVLVKTVSG 359
G Y + + + G
Sbjct: 78 RSGTLYSLTLYGLRG 92
>3t04_D Monobody 7C12; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding, phosphoprotein;
2.10A {Homo sapiens}
Length = 103
Score = 41.3 bits (97), Expect = 4e-05
Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 3/89 (3%)
Query: 87 TTPPDPPTNLSVNVRSGKTAQIFWSPPIS--GKYSGFKLKVISLSEKTPPRIIGFTENPP 144
++ PT L V + + +I W S +++ +P +
Sbjct: 5 SSVSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEF-TVPGYY 63
Query: 145 AGYSLKDLTPGGSYQVQLFSVYDSKESVA 173
+ ++ L PG Y + +++
Sbjct: 64 STATISGLKPGVDYTITVYAYDTFFPGYE 92
Score = 39.7 bits (93), Expect = 1e-04
Identities = 22/102 (21%), Positives = 36/102 (35%), Gaps = 8/102 (7%)
Query: 180 TTKPNTPGKFIVWFRNETTLLVLWQ-PSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPP 238
++ + P K V T+L + W +Y+++ V G
Sbjct: 5 SSVSSVPTKLEVVDATPTSLKISWDAYYSSWQNVKYYRITYGETGGDSPVQEFTVPGYY- 63
Query: 239 GPAQAAFKGLVPGRAYNISVQTVSED----EISTPTTAQYRT 276
+ A GL PG Y I+V E ++P + YRT
Sbjct: 64 --STATISGLKPGVDYTITVYAYDTFFPGYEPNSPISINYRT 103
Score = 32.0 bits (73), Expect = 0.070
Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 5/73 (6%)
Query: 290 SITSNSLRVVWEPP-KGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMS-EGLEPG 347
T SL++ W+ + Y+++ +P+ + + GL+PG
Sbjct: 18 DATPTSLKISWDAYYSSWQNVKYYRITY---GETGGDSPVQEFTVPGYYSTATISGLKPG 74
Query: 348 RTYQVLVKTVSGK 360
Y + V
Sbjct: 75 VDYTITVYAYDTF 87
>2ee2_A Contactin-1; neural cell surface protein F3, glycoprotein GP135,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 119
Score = 40.8 bits (96), Expect = 7e-05
Identities = 12/73 (16%), Positives = 27/73 (36%)
Query: 89 PPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAGYS 148
P + PT + V V S + W + ++++ + +K +
Sbjct: 18 PSEAPTEVGVKVLSSSEISVHWEHVLEKIVESYQIRYWAAHDKEEAANRVQVTSQEYSAR 77
Query: 149 LKDLTPGGSYQVQ 161
L++L P Y ++
Sbjct: 78 LENLLPDTQYFIE 90
Score = 26.9 bits (60), Expect = 5.0
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 186 PGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSI-DPPDAPESVLYVEKEGEPPGPAQAA 244
P + V + + + V W+ + Y++ D E+ V+ + A
Sbjct: 22 PTEVGVKVLSSSEISVHWEHVLEKIV-ESYQIRYWAAHDKEEAANRVQVTSQEY---SAR 77
Query: 245 FKGLVPGRAYNISVQ 259
+ L+P Y I V
Sbjct: 78 LENLLPDTQYFIEVG 92
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 40.8 bits (95), Expect = 3e-04
Identities = 31/183 (16%), Positives = 57/183 (31%), Gaps = 15/183 (8%)
Query: 183 PNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQ 242
P P F N+ T W+P + T+Y ++ + P
Sbjct: 4 PGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNSCH 63
Query: 243 AAFKGLVPGRAYNISVQTVSE------DEISTPTTAQYRTIPLRPLSFTYDKASITSNSL 296
+ R Y + V ++ DE+ T + P L+ + L
Sbjct: 64 FGKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYL 123
Query: 297 RVVWEPPKGFSEFD-----KYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRTYQ 351
+ W PP Y++ + +P ++ + T+ + L PG+ Y
Sbjct: 124 WIKWSPPTLIDLKTGWFTLLYEIRL---KPEKAAEWEIHFAGQQTEFKIL-SLHPGQKYL 179
Query: 352 VLV 354
V V
Sbjct: 180 VQV 182
Score = 32.4 bits (73), Expect = 0.14
Identities = 29/186 (15%), Positives = 52/186 (27%), Gaps = 22/186 (11%)
Query: 89 PPDPPTNLSVNVRSGKTAQIFWSPPISGKYSG-FKLKVISLSEKTPPRIIGFTENPPAGY 147
PP P + +T +W P G + L E + P
Sbjct: 3 PPGKPEIFKCRSPNKETFTCWWRPGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNSC 62
Query: 148 SLKDLTPGGSYQVQLFSVY------DSKESVAYTSRNFTTKPNTPGKFIVWFRN----ET 197
++ + V S Y + +P+ P + V + +
Sbjct: 63 HF-GKQYTSMWRTYIMMVNATNQMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKP 121
Query: 198 TLLVLWQPSYPASIYT-----HYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGR 252
L + W P + T Y++ + P A E + + L PG+
Sbjct: 122 YLWIKWSPPTLIDLKTGWFTLLYEIRLKPEKAAE-----WEIHFAGQQTEFKILSLHPGQ 176
Query: 253 AYNISV 258
Y + V
Sbjct: 177 KYLVQV 182
Score = 30.4 bits (68), Expect = 0.72
Identities = 33/156 (21%), Positives = 44/156 (28%), Gaps = 12/156 (7%)
Query: 18 PENLSSDNSTYRLDYIPAHGHPPPNTTYVSRDIKDN--IEFSEGLPGTKYDFYLYYTN-- 73
P + Y L Y ++ Y + TN
Sbjct: 26 PGTDGGLPTNYSLTYHREGETLMHECPDYITGGPNSCHFGKQYTSMWRTYIMMVNATNQM 85
Query: 74 -STVHDWLTWTASITTPPDPPTNLSVNVR----SGKTAQIFWSPPIS--GKYSGFKLK-V 125
S+ D L + PDPP L+V V+ I WSPP K F L
Sbjct: 86 GSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPPTLIDLKTGWFTLLYE 145
Query: 126 ISLSEKTPPRIIGFTENPPAGYSLKDLTPGGSYQVQ 161
I L + + + L PG Y VQ
Sbjct: 146 IRLKPEKAAEWEIHFAGQQTEFKILSLHPGQKYLVQ 181
>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein,
immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG;
2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB:
1p9m_C 2arw_A
Length = 325
Score = 40.6 bits (94), Expect = 5e-04
Identities = 26/156 (16%), Positives = 53/156 (33%), Gaps = 12/156 (7%)
Query: 18 PENLSSDNSTYRLDYIPAHGHPPPNTTYVSRDIKDNIEFSEGL-----PGTKYDFYLYYT 72
P + S + L P + + +++ +FS L + Y +
Sbjct: 117 PRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVA 176
Query: 73 N---STVHDWLTWTASITTPPDPPTNLSVNVRSGK--TAQIFWSPPISGKYSGFKLK--V 125
+ S T+ PDPP N++V + + W P S S ++L+ +
Sbjct: 177 SSVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFEL 236
Query: 126 ISLSEKTPPRIIGFTENPPAGYSLKDLTPGGSYQVQ 161
+E++ ++ + D G + VQ
Sbjct: 237 RYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQ 272
Score = 30.6 bits (68), Expect = 0.69
Identities = 23/184 (12%), Positives = 47/184 (25%), Gaps = 17/184 (9%)
Query: 183 PNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVS--IDPPDAPESVLYVEKEGEPPGP 240
P P + ++ W P S+ T + E + +
Sbjct: 95 PEEPQLSCFRKSPLSNVVCEWGPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQK 154
Query: 241 AQAAF-KGLVPGRAYNISVQTVSE------DEISTPTTAQYRTIPLRPLSFTYDKASITS 293
Y +S+ S + + P P + T +
Sbjct: 155 FSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQTFQGCGILQPDP--PANITVTAVARNP 212
Query: 294 NSLRVVWEPPKGFSEFD---KYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRTY 350
L V W+ P ++ ++++ R S T T + + G +
Sbjct: 213 RWLSVTWQDPHSWNSSFYRLRFELRY---RAERSKTFTTWMVKDLQHHCVIHDAWSGLRH 269
Query: 351 QVLV 354
V +
Sbjct: 270 VVQL 273
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin type
III domain containing protein, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 38.1 bits (89), Expect = 6e-04
Identities = 20/83 (24%), Positives = 29/83 (34%), Gaps = 6/83 (7%)
Query: 83 TASITTP---PDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGF 139
+ T P P N S + + W+PP S + ++L RI
Sbjct: 8 DIQVITQTGVPGQPLNFKAEPESETSILLSWTPPRSDTIANYELVYKDGEHGEEQRI--- 64
Query: 140 TENPPAGYSLKDLTPGGSYQVQL 162
T P Y L+ L P Y +L
Sbjct: 65 TIEPGTSYRLQGLKPNSLYYFRL 87
>1iar_B Protein (interleukin-4 receptor alpha chain); cytokine
receptor,interleukin-4, cytokine/receptor complex; 2.30A
{Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 3bpl_B*
3bpn_B* 3bpo_B*
Length = 207
Score = 39.6 bits (92), Expect = 7e-04
Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 11/155 (7%)
Query: 18 PENLSSDNSTYRLDYIPAHGHPPPNTTYVSRDIKD----NIEFSEGLPGTKYDFYLYYTN 73
++ ++ RL Y +T + ++ + + Y L+
Sbjct: 23 MNGPTNCSTELRLLYQLVFLLSEAHTCIPENNGGAGCVCHLLMDDVVSADNYTLDLWAGQ 82
Query: 74 STVHDWLTWTASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSG-----FKLKVISL 128
+ ++ S P P NL+V+ T + WS P + + + S
Sbjct: 83 QLLWK-GSFKPSEHVKPRAPGNLTVHTNVSDTLLLTWSNPYPPDNYLYNHLTYAVNIWSE 141
Query: 129 SEKTPPRIIGFTENPPAGY-SLKDLTPGGSYQVQL 162
++ RI T P+ + L G SY+ ++
Sbjct: 142 NDPADFRIYNVTYLEPSLRIAASTLKSGISYRARV 176
Score = 35.0 bits (80), Expect = 0.019
Identities = 19/111 (17%), Positives = 35/111 (31%), Gaps = 6/111 (5%)
Query: 248 LVPGRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKGFS 307
+V Y + + + P P + T S++L + W P
Sbjct: 68 VVSADNYTLDLWAGQQLLWKGSFKPSEHVKPRAPGNLTVHT--NVSDTLLLTWSNPYPPD 125
Query: 308 EFD----KYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRTYQVLV 354
+ Y V+I A + EP+ + L+ G +Y+ V
Sbjct: 126 NYLYNHLTYAVNIWSENDPADFRIYNVTYLEPSLRIAASTLKSGISYRARV 176
Score = 28.8 bits (64), Expect = 2.4
Identities = 26/120 (21%), Positives = 39/120 (32%), Gaps = 14/120 (11%)
Query: 147 YSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTT----KPNTPGKFIVWFRNETTLLVL 202
+ D+ +Y + L++ +F KP PG V TLL+
Sbjct: 63 LLMDDVVSADNYTLDLWA-----GQQLLWKGSFKPSEHVKPRAPGNLTVHTNVSDTLLLT 117
Query: 203 WQPSYPASIYTH----YKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISV 258
W YP Y + Y V+I + P P + A L G +Y V
Sbjct: 118 WSNPYPPDNYLYNHLTYAVNIWSENDPADFRIYNVTYLEPS-LRIAASTLKSGISYRARV 176
>2dlh_A Receptor-type tyrosine-protein phosphatase delta; protein-tyrosine
phosphatase delta, R-PTP-delta, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 121
Score = 37.8 bits (88), Expect = 9e-04
Identities = 16/109 (14%), Positives = 37/109 (33%), Gaps = 20/109 (18%)
Query: 89 PPDPPTNLSVNVRSGKTAQIFWSPP--ISGKYSGFKLKVISLSEKTPPRIIGFTENPPAG 146
P P ++ + S T + W P +G+ G+++ + +
Sbjct: 18 PSSAPRDVQARMLSSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHNVADSQI 77
Query: 147 YSLKDLTPGGSYQVQLFSVYDSKESVAYTSR---------NFTTKPNTP 186
++ +L P +Y V++ +A+TS T+ +
Sbjct: 78 TTIGNLVPQKTYSVKV---------LAFTSIGDGPLSSDIQVITQTGSG 117
Score = 27.0 bits (60), Expect = 4.9
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 195 NETTLLVLWQ-PSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRA 253
+ TT+LV W+ P P Y+V +++ LVP +
Sbjct: 31 SSTTILVQWKEPEEPNGQIQGYRVYYTMDPTQHVNNWMKHN--VADSQITTIGNLVPQKT 88
Query: 254 YNISVQ 259
Y++ V
Sbjct: 89 YSVKVL 94
>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine,
ligand-receptor complex, signaling protein-cytokin; HET:
NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1
Length = 313
Score = 39.5 bits (91), Expect = 0.001
Identities = 28/185 (15%), Positives = 58/185 (31%), Gaps = 16/185 (8%)
Query: 191 VWFRNETTLLVLWQPSYPASIYTHYKVSI--DPPDAPESVLYVEKEGEPPGPAQAAF--K 246
+ ++L+ W+P + T + + + + G + + K
Sbjct: 108 LMNLTTSSLICQWEPGPETHLPTSFTLKSFKSRGNCQTQGDSILDCVPKDGQSHCSIPRK 167
Query: 247 GLVPGRAYNISVQTVSEDEISTPT----TAQYRTIPLRP----LSFTYDKASITSNSLRV 298
L+ + I VQ + S P + + + A + L++
Sbjct: 168 HLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAGCLQL 227
Query: 299 VWEPPKGFSEFD-KYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRTY--QVLVK 355
WEP + + K ++ +R AS + E Q ++ GL P Y Q+
Sbjct: 228 SWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELC-GLLPATAYTLQIRCI 286
Query: 356 TVSGK 360
Sbjct: 287 RWPLP 291
Score = 36.8 bits (84), Expect = 0.009
Identities = 19/119 (15%), Positives = 36/119 (30%), Gaps = 11/119 (9%)
Query: 54 IEFSEGLPGTKYDFYLYYTN---STVHDWLTWTASITTPPDPPTNLSVNVR------SGK 104
I L ++ N +++ L +PP +++
Sbjct: 164 IPRKHLLLYQNMGIWVQAENALGTSMSPQLCLDPMDVVKLEPPMLRTMDPSPEAAPPQAG 223
Query: 105 TAQIFWSPPISGKYSGFK--LKVISLSEKTPPRIIGFTENPPAGYSLKDLTPGGSYQVQ 161
Q+ W P G + K L+ + ++G Y L L P +Y +Q
Sbjct: 224 CLQLSWEPWQPGLHINQKCELRHKPQRGEASWALVGPLPLEALQYELCGLLPATAYTLQ 282
>2edd_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 123
Score = 37.5 bits (87), Expect = 0.001
Identities = 14/105 (13%), Positives = 32/105 (30%), Gaps = 4/105 (3%)
Query: 87 TTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLK---VISLSEKTPPRIIGFTENP 143
+TP PP + + ++ W+ K + +E+
Sbjct: 16 STPMLPPVGVQAVALTHDAVRVSWADNSVPKNQKTSEVRLYTVRWRTSFSASAKYKSEDT 75
Query: 144 PAG-YSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTPG 187
+ Y+ L P Y+ + + + S + + TT +
Sbjct: 76 TSLSYTATGLKPNTMYEFSVMVTKNRRSSTWSMTAHATTYEASGP 120
Score = 26.4 bits (58), Expect = 7.4
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 8/76 (10%)
Query: 290 SITSNSLRVVWEPP-----KGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGL 344
++T +++RV W + SE Y V R ++S + GL
Sbjct: 29 ALTHDAVRVSWADNSVPKNQKTSEVRLYTVR--WRTSFSASAKYKSEDTTSLSYTAT-GL 85
Query: 345 EPGRTYQVLVKTVSGK 360
+P Y+ V +
Sbjct: 86 KPNTMYEFSVMVTKNR 101
>2ed9_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 124
Score = 36.5 bits (85), Expect = 0.002
Identities = 17/77 (22%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 89 PPDPPTNLSVNVRSGKTAQIFWSPP----ISGKYSGFKLKVISLSEKTPPRIIGFTENPP 144
P PP N+S+ V + ++ ++ W PP +G +G+K++ + + +
Sbjct: 28 PSAPPQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMETLEPNNL-- 85
Query: 145 AGYSLKDLTPGGSYQVQ 161
Y L G Y Q
Sbjct: 86 -WYLFTGLEKGSQYSFQ 101
Score = 29.2 bits (66), Expect = 0.78
Identities = 15/77 (19%), Positives = 23/77 (29%), Gaps = 8/77 (10%)
Query: 186 PGKFIVWFRNETTLLVLWQPSYPAS---IYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQ 242
P + N ++ V W P + T YK+ + + P
Sbjct: 32 PQNVSLEVVNSRSIKVSWLPPPSGTQNGFITGYKIRHRKTTRRGEMETL-----EPNNLW 86
Query: 243 AAFKGLVPGRAYNISVQ 259
F GL G Y+ V
Sbjct: 87 YLFTGLEKGSQYSFQVS 103
Score = 26.9 bits (60), Expect = 6.1
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 7/69 (10%)
Query: 290 SITSNSLRVVWEPPKGFS---EFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEP 346
+ S S++V W PP + Y++ R+ T + + GLE
Sbjct: 39 VVNSRSIKVSWLPPPSGTQNGFITGYKIR--HRKTTRRGEMETLEPNNLWY--LFTGLEK 94
Query: 347 GRTYQVLVK 355
G Y V
Sbjct: 95 GSQYSFQVS 103
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 35.8 bits (82), Expect = 0.003
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 11/103 (10%)
Query: 178 NFTTKPNTPGKFIVWFRNETTLLVLWQ--PSYPASIYTHYKVSIDPPDAPESVLYVEKEG 235
+ ++ + T+L ++W+ + +S YT YK+ + ++
Sbjct: 3 SGSSGAIQVFDVTAVNISATSLTLIWKVSDNESSSNYT-YKIHVAGETDSSNL------- 54
Query: 236 EPPGPAQAAFKGLVPGRAYNISVQTVSEDEISTPTTAQYRTIP 278
+A GL YNI+V V D TP Q T P
Sbjct: 55 -NVSEPRAVIPGLRSSTFYNITVCPVLGDIEGTPGFLQVHTPP 96
Score = 30.0 bits (67), Expect = 0.32
Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 5/103 (4%)
Query: 85 SITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPP 144
S ++ +++ S + + W + S + K I ++ +T + +E
Sbjct: 3 SGSSGAIQVFDVTAVNISATSLTLIWKVSDNESSSNYTYK-IHVAGETDSSNLNVSEP-- 59
Query: 145 AGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTPG 187
+ L Y + + V E T P G
Sbjct: 60 -RAVIPGLRSSTFYNITVCPVLGDIEGTPGFL-QVHTPPVPSG 100
>2ic2_A CG9211-PA, GH03927P; IHOG, hedgehog, fibronectin type III, protein
binding; HET: MSE; 1.30A {Drosophila melanogaster} SCOP:
b.1.2.1
Length = 115
Score = 36.0 bits (83), Expect = 0.004
Identities = 23/114 (20%), Positives = 42/114 (36%), Gaps = 18/114 (15%)
Query: 89 PPDPPTNLSVNVRSGKTAQIFWSPPISG-----------KYSGFKLKVISLSEKTPPRII 137
PPT +V S ++ + W P + + G + + ++ P
Sbjct: 2 STYPPTPPNVTRLSDESVMLRWMVPRNDGLPIVIFKVQYRMVGKRKNWQTTNDNIPYGKP 61
Query: 138 GFTENPPAG--YSLKDLTPGGSYQVQLFSVY---DSKESVAYTSRNFTTKPNTP 186
+ S+ DL P +Y+ ++ +VY D+KES S F +P
Sbjct: 62 KWNSELGKSFTASVTDLKPQHTYRFRILAVYSNNDNKESNT--SAKFYLQPGAA 113
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 37.0 bits (85), Expect = 0.004
Identities = 27/201 (13%), Positives = 55/201 (27%), Gaps = 18/201 (8%)
Query: 92 PPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAGYSLKD 151
PP N+ +N + K + W P K + + T
Sbjct: 4 PPENVRMNSVNFKNI-LQWESPAFAKGQLTFTAQYLSYRIFQDKCMQTTLTE---CDFSS 59
Query: 152 LTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTPGKFIVWFR-NETTLLVLWQPSYPAS 210
L+ G + +++ + + + S G + L + + +
Sbjct: 60 LSKYGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVLADCLHMRFLAPKIEN 119
Query: 211 IYTHYKVSIDPPDAPESVLYVEKEGE-----PPGPAQAAFKGLVPGRAYNISVQTVSED- 264
Y + + +V Y ++ + P + L P Y + V+ D
Sbjct: 120 EYETWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRGFLPDR 179
Query: 265 -------EISTPTTAQYRTIP 278
E T T+P
Sbjct: 180 NKAGEWSEPVCEQTTHDETVP 200
Score = 33.6 bits (76), Expect = 0.058
Identities = 22/173 (12%), Positives = 49/173 (28%), Gaps = 13/173 (7%)
Query: 191 VWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVP 250
+ N +L W+ A + + + + F L
Sbjct: 10 MNSVNFKNILQ-WESPAFAKGQLTFTAQYLSYRIFQD------KCMQTTLTECDFSSLSK 62
Query: 251 GRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKGFSEFD 310
+ + V+ DE S + + + + + ++ L + + PK +E++
Sbjct: 63 YGDHTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVLADCLHMRFLAPKIENEYE 122
Query: 311 KYQVSINVRRPG------ASSTPITKSRDEPTQCDMSEGLEPGRTYQVLVKTV 357
+ + T ++ LEP TY V V+
Sbjct: 123 TWTMKNVYNSWTYNVQYWKQGTDEKFQITPQYDFEVLRNLEPWTTYCVQVRGF 175
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 35.3 bits (82), Expect = 0.005
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 6/77 (7%)
Query: 87 TTPPDPPTNLSVNVRSGKTAQIFWSPPIS--GKYSGFKLKVISLSEKTPPRIIGFTENPP 144
++ P P NL S + I W PP G G++L +S I E
Sbjct: 5 SSGPGPVENLQAVSTSPTSILITWEPPAYANGPVQGYRLFCTEVSTGKEQNI----EVDG 60
Query: 145 AGYSLKDLTPGGSYQVQ 161
Y L+ L Y ++
Sbjct: 61 LSYKLEGLKKFTEYSLR 77
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 35.4 bits (82), Expect = 0.005
Identities = 20/108 (18%), Positives = 39/108 (36%), Gaps = 26/108 (24%)
Query: 89 PPDPPTNLSVNVRSGKTAQIFWSPPIS----GKYSGFKLKVISLSEKTPPRIIGFTENPP 144
P P NL V + T ++ W PP+ G+ + + ++ + + I
Sbjct: 8 PSGFPQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITTDTR-- 65
Query: 145 AGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSR---------NFTTKP 183
++L L P +Y +++ A+TS+ T P
Sbjct: 66 --FTLTGLKPDTTYDIKV---------RAWTSKGSGPLSPSIQSRTMP 102
Score = 27.3 bits (61), Expect = 3.6
Identities = 14/77 (18%), Positives = 25/77 (32%), Gaps = 9/77 (11%)
Query: 186 PGKFIVWFRNETTLLVLWQPSYPASIY---THYKVSIDPPDAPESVLYVEKEGEPPGPAQ 242
P V +T + W P A Y V ++ + + + + +
Sbjct: 12 PQNLHVTGLTTSTTELAWDPPVLAERNGRIISYTVVFRDINSQQELQNITTDT------R 65
Query: 243 AAFKGLVPGRAYNISVQ 259
GL P Y+I V+
Sbjct: 66 FTLTGLKPDTTYDIKVR 82
Score = 26.1 bits (58), Expect = 8.5
Identities = 14/69 (20%), Positives = 25/69 (36%), Gaps = 8/69 (11%)
Query: 290 SITSNSLRVVWEPPKGFS---EFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEP 346
+T+++ + W+PP Y V R S + + GL+P
Sbjct: 19 GLTTSTTELAWDPPVLAERNGRIISYTVVF---RDINSQQELQNITTDTRF--TLTGLKP 73
Query: 347 GRTYQVLVK 355
TY + V+
Sbjct: 74 DTTYDIKVR 82
>1x5j_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 113
Score = 35.6 bits (82), Expect = 0.005
Identities = 17/105 (16%), Positives = 32/105 (30%), Gaps = 4/105 (3%)
Query: 87 TTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLK---VISLSEKTPPRIIGFTENP 143
+ P PP + ++ S T +I W+ K+ + P N
Sbjct: 6 SGPMMPPVGVQASILSHDTIRITWADNSLPKHQKITDSRYYTVRWKTNIPANTKYKNANA 65
Query: 144 PA-GYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTPG 187
Y + L P Y+ + + S + + TT +
Sbjct: 66 TTLSYLVTGLKPNTLYEFSVMVTKGRRSSTWSMTAHGTTFELSGP 110
Score = 27.9 bits (62), Expect = 1.9
Identities = 12/76 (15%), Positives = 29/76 (38%), Gaps = 8/76 (10%)
Query: 290 SITSNSLRVVWEPP-----KGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGL 344
++ +++R+ W + ++ Y V + + K+ + T + GL
Sbjct: 19 ILSHDTIRITWADNSLPKHQKITDSRYYTVRW---KTNIPANTKYKNANATTLSYLVTGL 75
Query: 345 EPGRTYQVLVKTVSGK 360
+P Y+ V G+
Sbjct: 76 KPNTLYEFSVMVTKGR 91
>1x4x_A Fibronectin type-III domain containing protein 3A; FN3,
immunoglobulin-like beta- sandwich fold, KIAA0970,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 106
Score = 35.0 bits (81), Expect = 0.006
Identities = 19/102 (18%), Positives = 38/102 (37%), Gaps = 6/102 (5%)
Query: 87 TTPPDPPTNLSVNVRSGKTAQIFWSPPISG--KYSGFKLKVISLSEKTPPRIIGFTENPP 144
++ PD V RS AQ+ W P+S + ++L+ + G +
Sbjct: 5 SSGPDQCKPPQVTCRSATCAQVNWEVPLSNGTDVTEYRLEWGGVEGSMQICYCGPGLS-- 62
Query: 145 AGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTP 186
Y +K L+P +Y ++ ++ T P++
Sbjct: 63 --YEIKGLSPATTYYCRVQALSVVGAGPFSEVVACVTPPSSG 102
Score = 27.7 bits (62), Expect = 2.2
Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 6/67 (8%)
Query: 290 SITSNSLRVVWEPPK-GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGR 348
++ +V WE P ++ +Y++ S ++ GL P
Sbjct: 18 CRSATCAQVNWEVPLSNGTDVTEYRLEW--GGVEGSMQICYCGPG--LSYEIK-GLSPAT 72
Query: 349 TYQVLVK 355
TY V+
Sbjct: 73 TYYCRVQ 79
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.006
Identities = 44/228 (19%), Positives = 70/228 (30%), Gaps = 77/228 (33%)
Query: 32 YIPAHGHPP-PNTTYVSRDIKDNIEFSEGLP-------GTKYDF---YLYYTNSTVHDWL 80
+I + PNT+ ++D++E +EG+P + Y+ TNS +
Sbjct: 305 FIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHL---- 360
Query: 81 TWTASITTPPDPPTNLS-VN-----VRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPP 134
P +S VN V SG PP S G L + K P
Sbjct: 361 --------PAGKQVEISLVNGAKNLVVSG--------PPQS--LYGLNLTL--RKAKAPS 400
Query: 135 RI----IGFTENPPAGYS---------------------LKDLTPGG-SYQV-QL-FSVY 166
+ I F+E + KDL S+ + VY
Sbjct: 401 GLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 167 DSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPSYPASIYTH 214
D+ + + + + IV L V W+ + TH
Sbjct: 461 DT-----FDGSDLRVLSGSISERIV--DCIIRLPVKWETTTQFKA-TH 500
Score = 30.8 bits (69), Expect = 0.85
Identities = 52/391 (13%), Positives = 95/391 (24%), Gaps = 145/391 (37%)
Query: 53 NIEFSEGLPGTKYDFYLYYTNSTVHDWLTWTASITTPPDPPTNLSVNVRSGKTAQIFWSP 112
++E +P ++ S + + + + P+P + +
Sbjct: 15 SLEHVLLVPTA-----SFFIASQLQE--QFNKIL---PEPTEGFAAD-----------DE 53
Query: 113 PIS-----GKYSGFKLKVISLSEKTPPR---------IIGFTENPPAGY----------- 147
P + GK+ G+ V SL E + + F Y
Sbjct: 54 PTTPAELVGKFLGY---VSSLVEPSKVGQFDQVLNLCLTEFENC----YLEGNDIHALAA 106
Query: 148 SLKDLTPGGSYQVQ-LFSVYDSKESVAYTSRNFTTKPNTPG--------------KFIVW 192
L + + L Y T+R +P + +
Sbjct: 107 KLLQENDTTLVKTKELIKNY-------ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAI 159
Query: 193 F----RNETTL--LVLWQPSYPASIYTHYKVSIDPP-DAPESVLYVEKEGEPPGPAQAAF 245
F + L +Y Y V + L + A+ F
Sbjct: 160 FGGQGNTDDYFEEL--------RDLYQTYHVLVGDLIKFSAETL--SELIRTTLDAEKVF 209
Query: 246 -KGL-----------VPGRAYNISVQTVSEDEISTP-----TTAQY----RTIPLRPLSF 284
+GL P + Y +S+ IS P A Y + + P
Sbjct: 210 TQGLNILEWLENPSNTPDKDYLLSI------PISCPLIGVIQLAHYVVTAKLLGFTPGEL 263
Query: 285 TYDKASITSNSLRVV----------WEPPKGFSEFDKYQVSINVRRP----GASS---TP 327
T +S +V WE F + G P
Sbjct: 264 RSYLKGATGHSQGLVTAVAIAETDSWE------SF--FVSVRKAITVLFFIGVRCYEAYP 315
Query: 328 ITKSRDEPTQCDMSEGLEPGRTYQVLVKTVS 358
T + D E E + + + ++
Sbjct: 316 NTSLPPSILE-DSLENNEGVPSPMLSISNLT 345
Score = 27.7 bits (61), Expect = 8.3
Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 36/97 (37%)
Query: 277 IPLRPLSFTYDKASITSNSLRVVWE-PPKGFS-------EFDKYQVSINVRRPGASSTPI 328
RPL +++ SL V P F +F+K P +
Sbjct: 4 YSTRPL-------TLSHGSLEHVLLVPTASFFIASQLQEQFNKIL-------PEPTEGFA 49
Query: 329 TKSRDEPTQ------------CDMSEGLEPGRTYQVL 353
+ DEPT + E + G+ QVL
Sbjct: 50 --ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL 84
>3cxe_C Granulocyte-macrophage colony-stimulating factor subunit alpha;
GM-CSF, receptor complex, dodecamer, disease mutation,
glyco membrane; HET: NAG BMA; 3.30A {Homo sapiens}
Length = 120
Score = 35.5 bits (81), Expect = 0.007
Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 8/79 (10%)
Query: 91 DPPTNLSVNVRSGKTAQIFWSPPISGK-YSGFKLKV------ISLSEKTPPRIIGFTENP 143
+PP+N++V + + W P + + S + + T +I + +
Sbjct: 19 NPPSNVTVRC-NTTHCLVRWKQPRTYQKLSYLDFQYQLDVHRKNTQPGTENLLINVSGDL 77
Query: 144 PAGYSLKDLTPGGSYQVQL 162
Y+ P + V++
Sbjct: 78 ENRYNFPSSEPRAKHSVKI 96
>1wk0_A KIAA0970 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 137
Score = 35.3 bits (81), Expect = 0.007
Identities = 19/113 (16%), Positives = 33/113 (29%), Gaps = 9/113 (7%)
Query: 83 TASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKV--------ISLSEK-TP 133
T + + +T + WSPP S + +S
Sbjct: 11 TKAFEALLSNIVKPVASDIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKD 70
Query: 134 PRIIGFTENPPAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTP 186
+ +L DL P Y ++ + Y+S + + FTT P
Sbjct: 71 GKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTLSCEP 123
Score = 31.1 bits (70), Expect = 0.21
Identities = 21/124 (16%), Positives = 38/124 (30%), Gaps = 11/124 (8%)
Query: 167 DSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPE 226
S S ++ F + K + T+++ W P P+S+ P+
Sbjct: 2 SSGSSGDEETKAFEALLSNIVKPVASDIQARTVVLTWSP--PSSLINGETDESSVPELYG 59
Query: 227 SVLYVEKEGEP-------PGPA-QAAFKGLVPGRAYNISVQTVSEDEISTPT-TAQYRTI 277
+ + G+ G L P Y+ VQ TP+ + T+
Sbjct: 60 YEVLISSTGKDGKYKSVYVGEETNITLNDLKPAMDYHAKVQAEYNSIKGTPSEAEIFTTL 119
Query: 278 PLRP 281
P
Sbjct: 120 SCEP 123
Score = 27.6 bits (61), Expect = 3.9
Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 9/78 (11%)
Query: 290 SITSNSLRVVWEPPKGFSEFDKYQVSIN--------VRRPGASSTPITKSRDEPTQCDMS 341
I + ++ + W PP + + S+ + G + E T ++
Sbjct: 28 DIQARTVVLTWSPPSSLINGETDESSVPELYGYEVLISSTGKDGKYKSVYVGEETNITLN 87
Query: 342 EGLEPGRTYQVLVKTVSG 359
L+P Y V+
Sbjct: 88 -DLKPAMDYHAKVQAEYN 104
>1uc6_A CNTF receptor, ciliary neurotrophic factor receptor alpha;
cytokine, leukemia inhibitory factor, cytokine receptor;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 109
Score = 34.6 bits (79), Expect = 0.009
Identities = 14/77 (18%), Positives = 26/77 (33%), Gaps = 4/77 (5%)
Query: 90 PDPPTNLSVNVRSGKTAQ--IFWSPPISGKY-SGFKLK-VISLSEKTPPRIIGFTENPPA 145
PDPP N+ + + W P + F LK + + +
Sbjct: 8 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGT 67
Query: 146 GYSLKDLTPGGSYQVQL 162
+++ D G Y +Q+
Sbjct: 68 AHTITDAYAGKEYIIQV 84
Score = 28.4 bits (63), Expect = 1.2
Identities = 13/78 (16%), Positives = 25/78 (32%), Gaps = 2/78 (2%)
Query: 278 PLRPLSFTYDKASITSNSLRVVWEPPKGFSEFDKYQVSINVR-RPGASSTPITKSRDEPT 336
P P + L V W+ P + + + + + +R RP T
Sbjct: 8 PDPPENVVARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSNGT 67
Query: 337 QCDMSEGLEPGRTYQVLV 354
++ G+ Y + V
Sbjct: 68 AHTIT-DAYAGKEYIIQV 84
>2e7h_A Ephrin type-B receptor 4; FN3 domain, tyrosine- protein kinase
receptor HTK, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 109
Score = 34.8 bits (80), Expect = 0.009
Identities = 15/76 (19%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 88 TPPDPPTNLSVNVRSGKTAQIFWSPPIS--GKYSGFKLKVISLSEKTPPRIIGFTENPPA 145
+ P +++ V S + + W+ P + G +++K + P + +
Sbjct: 6 SGPPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSENR 65
Query: 146 GYSLKDLTPGGSYQVQ 161
L+ L G SY VQ
Sbjct: 66 -AELRGLKRGASYLVQ 80
Score = 29.4 bits (66), Expect = 0.58
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 4/78 (5%)
Query: 183 PNTPGKFIVWFRNETTLLVLWQ-PSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPA 241
P V + ++L + W P P+ Y+V A +
Sbjct: 8 PPAVSDIRVTRSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSSVRFLKTSEN--- 64
Query: 242 QAAFKGLVPGRAYNISVQ 259
+A +GL G +Y + V+
Sbjct: 65 RAELRGLKRGASYLVQVR 82
Score = 26.3 bits (58), Expect = 7.3
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 3/67 (4%)
Query: 290 SITSNSLRVVWEPP-KGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGR 348
+ +SL + W P Y+V + + S+ + + + ++ GL+ G
Sbjct: 18 RSSPSSLSLAWAVPRAPSGAVLDYEVKYHEKGAEGPSS-VRFLKTSENRAELR-GLKRGA 75
Query: 349 TYQVLVK 355
+Y V V+
Sbjct: 76 SYLVQVR 82
>1eer_B Epobp, erythropoietin receptor; signal transduction, hematopoietic
cytokine, cytokine receptor class 1, complex
(cytokine/receptor); 1.90A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 PDB: 1cn4_A 2jix_B 1eba_A* 1ern_A 1ebp_A
Length = 227
Score = 36.2 bits (83), Expect = 0.009
Identities = 27/181 (14%), Positives = 50/181 (27%), Gaps = 14/181 (7%)
Query: 89 PPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAGY- 147
P L + FW S + E P ++ + P A
Sbjct: 20 AARGPEELLCFTERLEDLVCFWEEAASAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARGA 79
Query: 148 -------SLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLL 200
D + ++++ + + N + P + +E+ +
Sbjct: 80 VRFWCSLPTADTSSFVPLELRVTAASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHV 139
Query: 201 VL-WQPSYPASIYTH--YKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNIS 257
VL W P + +H Y+V + SV VE + L Y +
Sbjct: 140 VLRWLPPPETPMTSHIRYEVDVSAGQGAGSVQRVEILEGRT---ECVLSNLRGRTRYTFA 196
Query: 258 V 258
V
Sbjct: 197 V 197
Score = 34.7 bits (79), Expect = 0.033
Identities = 17/169 (10%), Positives = 39/169 (23%), Gaps = 11/169 (6%)
Query: 18 PENLSSDNSTYRLDYIPAHGHPPPNTTYVSRDIKDNIEFSEGLPG------TKYDFYLYY 71
+ Y Y + + + + F LP + +
Sbjct: 44 AASAGVGPGQYSFSYQLEDEPWKLCRLHQAPTARGAVRFWCSLPTADTSSFVPLELRVTA 103
Query: 72 TNSTVHDWLTWTASITTPPDPPTNLSVNVRSGKTA-QIFWSPPISGKYSG---FKLKVIS 127
+ + D P L + + W PP + +++ V +
Sbjct: 104 ASGAPRYHRVIHINEVVLLDAPVGLVARLADESGHVVLRWLPPPETPMTSHIRYEVDVSA 163
Query: 128 LSEKTPPRIIGFTENPPAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTS 176
+ + E L +L Y + + + S
Sbjct: 164 GQGAGSVQRVEILEGRTE-CVLSNLRGRTRYTFAVRARMAEPSFGGFWS 211
>2b5i_C Cytokine receptor common gamma chain; four-helix bundle,
fibronectin domain, cytokine-cytokine REC complex; HET:
NAG; 2.30A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 PDB:
3bpl_C* 3qb7_C* 3qaz_C*
Length = 199
Score = 35.9 bits (82), Expect = 0.009
Identities = 9/72 (12%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 90 PDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAGYSL 149
P P NL+++ S ++ W+ ++ + + + + +SL
Sbjct: 99 PWAPENLTLHKLSESQLELNWNNRFLNHCLEHLVQYRTDWDHSWTEQSVDYRH---KFSL 155
Query: 150 KDLTPGGSYQVQ 161
+ Y +
Sbjct: 156 PSVDGQKRYTFR 167
Score = 28.9 bits (64), Expect = 2.2
Identities = 22/178 (12%), Positives = 46/178 (25%), Gaps = 21/178 (11%)
Query: 92 PPTNLSVNVRSGKTAQIFWSPPISGKYSGFKL----KVISLSEKTPPRIIGFTENPPAGY 147
P + V + + W + + L K + F+E +G
Sbjct: 1 PLPEVQCFVFNVEYMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFSEEITSGC 60
Query: 148 SLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTT----KPNTPGKFIVWFRNETTLLVLW 203
L+ + + D +E ++ P P + +E+ L + W
Sbjct: 61 QLQKKEIHLYQTFVV-QLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSESQLELNW 119
Query: 204 QPSYPASIYTH---YKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISV 258
+ H Y+ D E + + + + Y V
Sbjct: 120 NNRFLNHCLEHLVQYRTDWDHS---------WTEQSVDYRHKFSLPSVDGQKRYTFRV 168
>3g9v_A Interleukin 22 receptor, alpha 2; cytokine, cytokine receptor,
receptor, glycoprotein, polymorphism, secreted,
cytokine/cytokine receptor complex; 2.76A {Homo sapiens}
Length = 211
Score = 35.9 bits (82), Expect = 0.010
Identities = 26/208 (12%), Positives = 55/208 (26%), Gaps = 17/208 (8%)
Query: 87 TTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKV-ISLSEKTPPRIIGFTENPPA 145
T P + R+ + W P + + V + + +
Sbjct: 5 THESLKPQRVQFQSRNFHN-ILQWQPGRALTGNSSVYFVQYKIYGQRQWKNKEDCWGTQE 63
Query: 146 GY---SLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNT---PGKFIVWFRNETTL 199
+ + Y ++ + S + FT T P + N + L
Sbjct: 64 LSCDLTSETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNITQVNGSLL 123
Query: 200 LVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAA-------FKGLVPGR 252
++L P+ P VSI+ +++ + L P
Sbjct: 124 VILHAPNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEGAHRAVEIEALTPHS 183
Query: 253 AYNISVQTVSED--EISTPTTAQYRTIP 278
+Y + + S + + IP
Sbjct: 184 SYCVVAEIYQPMLDRRSQRSEERCVEIP 211
Score = 32.1 bits (72), Expect = 0.18
Identities = 23/126 (18%), Positives = 37/126 (29%), Gaps = 16/126 (12%)
Query: 246 KGLVPGRAYNISVQTVSEDEIS----TPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWE 301
+ Y V+ S S TP + + P + + SL V+
Sbjct: 71 ETSDIQEPYYGRVRAASAGSYSEWSMTPRFTPWWETKIDPPVMNI---TQVNGSLLVILH 127
Query: 302 PP---------KGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRTYQV 352
P K S D Y++ V S K + + E L P +Y V
Sbjct: 128 APNLPYRYQKEKNVSIEDYYELLYRVFIINNSLEKEQKVYEGAHRAVEIEALTPHSSYCV 187
Query: 353 LVKTVS 358
+ +
Sbjct: 188 VAEIYQ 193
>2yuw_A Myosin binding protein C, SLOW type; fibronectin III domain, SLOW-
type protein, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 110
Score = 34.6 bits (80), Expect = 0.010
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 2/81 (2%)
Query: 87 TTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAG 146
++ PPT L+V+ + T + W PP +G V+ + I ++
Sbjct: 5 SSGTSPPTLLTVDSVTDTTVTMRWRPPDHIGAAGLDGYVLEYCFEGTEDWIVANKDLIDK 64
Query: 147 --YSLKDLTPGGSYQVQLFSV 165
+++ L V++ +V
Sbjct: 65 TKFTITGLPTDAKIFVRVKAV 85
Score = 27.7 bits (62), Expect = 2.4
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 6/71 (8%)
Query: 290 SITSNSLRVVWEPPK--GFSEFDKYQVSINVRRPGASS-TPITKSRDEPTQCDMSEGLEP 346
S+T ++ + W PP G + D Y + G K + T+ ++ GL
Sbjct: 18 SVTDTTVTMRWRPPDHIGAAGLDGYVLEY--CFEGTEDWIVANKDLIDKTKFTIT-GLPT 74
Query: 347 GRTYQVLVKTV 357
V VK V
Sbjct: 75 DAKIFVRVKAV 85
>2erj_C Cytokine receptor common gamma chain; immune system-cytok complex;
HET: NAG FUC BMA; 3.00A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1
Length = 247
Score = 35.9 bits (82), Expect = 0.011
Identities = 11/76 (14%), Positives = 27/76 (35%), Gaps = 9/76 (11%)
Query: 90 PDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAG--- 146
P P NL+++ S ++ W+ ++ + + + +TE
Sbjct: 137 PWAPENLTLHKLSESQLELNWNNRFLNHCLEHLVQYRTDWDHS------WTEQSVDYRHK 190
Query: 147 YSLKDLTPGGSYQVQL 162
+SL + Y ++
Sbjct: 191 FSLPSVDGQKRYTFRV 206
Score = 31.7 bits (71), Expect = 0.25
Identities = 22/185 (11%), Positives = 48/185 (25%), Gaps = 21/185 (11%)
Query: 85 SITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRI----IGFT 140
S++ P + V + + W + + L + F+
Sbjct: 32 SLSVSTLPLPEVQCFVFNVEYMNCTWQSSSEPQPTNLTLHYWYKNSDNDKVQKCSHYLFS 91
Query: 141 ENPPAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTT----KPNTPGKFIVWFRNE 196
E +G L+ + + D +E ++ P P + +E
Sbjct: 92 EEITSGCQLQKKEIHLYQTFVV-QLQDPREPRRQATQMLKLQNLVIPWAPENLTLHKLSE 150
Query: 197 TTLLVLWQPSYPASIYTH---YKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRA 253
+ L + W + H Y+ D E + + + +
Sbjct: 151 SQLELNWNNRFLNHCLEHLVQYRTDWDHS---------WTEQSVDYRHKFSLPSVDGQKR 201
Query: 254 YNISV 258
Y V
Sbjct: 202 YTFRV 206
>1x5y_A Myosin binding protein C, fast-type; fast MYBP-C, fibronectin type
III domain containing protein, cytoskeleton, muscle
contraction; NMR {Mus musculus} SCOP: b.1.2.1
Length = 111
Score = 34.3 bits (79), Expect = 0.013
Identities = 15/85 (17%), Positives = 32/85 (37%), Gaps = 2/85 (2%)
Query: 83 TASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTEN 142
++ + P P +L+V + T + W PP G ++ + + +
Sbjct: 2 SSGSSGPTSAPQHLTVEDVTDTTTTLKWRPPDRIGAGGIDGYLVEYCLEGSEEWVPANKE 61
Query: 143 PPAG--YSLKDLTPGGSYQVQLFSV 165
P +++KDL G ++ V
Sbjct: 62 PVERCGFTVKDLPTGARILFRVVGV 86
Score = 29.3 bits (66), Expect = 0.67
Identities = 14/71 (19%), Positives = 24/71 (33%), Gaps = 6/71 (8%)
Query: 290 SITSNSLRVVWEPPK--GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMS-EGLEP 346
+T + + W PP G D Y V S + +++ +C + + L
Sbjct: 19 DVTDTTTTLKWRPPDRIGAGGIDGYLVE---YCLEGSEEWVPANKEPVERCGFTVKDLPT 75
Query: 347 GRTYQVLVKTV 357
G V V
Sbjct: 76 GARILFRVVGV 86
>2dju_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 106
Score = 34.2 bits (79), Expect = 0.013
Identities = 15/81 (18%), Positives = 34/81 (41%), Gaps = 2/81 (2%)
Query: 85 SITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPP 144
S ++ P PP +L V + + + W S + + ++ + + P + +
Sbjct: 3 SGSSGPKPPIDLVVTETTATSVTLTWDSGNSEPVTYYGIQYRAAGTEGPFQEVDGVATT- 61
Query: 145 AGYSLKDLTPGGSYQVQLFSV 165
YS+ L+P Y ++ +V
Sbjct: 62 -RYSIGGLSPFSEYAFRVLAV 81
>2e3v_A Neural cell adhesion molecule 1, 140 kDa isoform; NCAM, N-CAM 1,
NCAM-120, CD56 antigen, membra protein, glycoprotein,
structural genomics, NPPSFA; HET: PGE BTB; 1.95A {Homo
sapiens}
Length = 122
Score = 34.4 bits (79), Expect = 0.015
Identities = 18/104 (17%), Positives = 37/104 (35%), Gaps = 6/104 (5%)
Query: 88 TPPDPPTNLSVNVRSGKTAQIFWSPPIS---GKYSGFKLKVISLSEKTPPRIIGFTENPP 144
+ P P+ V S TAQ+ + P + +K + ++ E+ +
Sbjct: 6 SGPSSPSIDQVEPYSS-TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 64
Query: 145 AG--YSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTP 186
++ L P +Y V+L ++ + F T+P
Sbjct: 65 MEGIVTIVGLKPETTYAVRLAALNGKGLGEISAASEFKTQPVRE 108
Score = 30.1 bits (68), Expect = 0.46
Identities = 12/70 (17%), Positives = 29/70 (41%), Gaps = 3/70 (4%)
Query: 288 KASITSNSLRVVWEPPK--GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMS-EGL 344
+ S++ +V ++ P+ G KY+ + +++ + ++ GL
Sbjct: 15 QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGL 74
Query: 345 EPGRTYQVLV 354
+P TY V +
Sbjct: 75 KPETTYAVRL 84
>3up1_A Interleukin-7 receptor subunit alpha; cytokine receptor,
fibronectin type 3 fold, membrane and SOL glycosylation,
immune system; HET: NAG FUC NGA; 2.15A {Homo sapiens}
PDB: 3di3_B* 3di2_B*
Length = 223
Score = 35.5 bits (81), Expect = 0.015
Identities = 12/77 (15%), Positives = 24/77 (31%), Gaps = 4/77 (5%)
Query: 90 PDPPTNLSVNVRSG-KTAQIFWSPPISGKYSGFKLKV---ISLSEKTPPRIIGFTENPPA 145
P+ P +LSV R G + ++ K L + +
Sbjct: 113 PEAPFDLSVVYREGANDFVVTFNTSHLQKKYVKVLMHDVAYRQEKDENKWTHVNLSSTKL 172
Query: 146 GYSLKDLTPGGSYQVQL 162
+ L P Y++++
Sbjct: 173 TLLQRKLQPAAMYEIKV 189
Score = 32.1 bits (72), Expect = 0.19
Identities = 14/104 (13%), Positives = 29/104 (27%), Gaps = 6/104 (5%)
Query: 254 YNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPP---KGFSEFD 310
NI V+ + P P + +N V + K + +
Sbjct: 89 SNICVKVGEKSLTCKKIDLTTIVKPEAPFDLSVVYRE-GANDFVVTFNTSHLQKKYVKVL 147
Query: 311 KYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRTYQVLV 354
+ V R+ + + + L+P Y++ V
Sbjct: 148 MHDV--AYRQEKDENKWTHVNLSSTKLTLLQRKLQPAAMYEIKV 189
>2crm_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 34.3 bits (79), Expect = 0.015
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
Query: 288 KASITSNSLRVVWEPPK--GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLE 345
K I S+S ++ W+PPK G + +KY V G++ T+ + + L
Sbjct: 27 KGKIHSHSFKITWDPPKDNGGATINKYVVE---MAEGSNGNKWEMIYSGATREHLCDRLN 83
Query: 346 PGRTYQVLVKTVS 358
PG Y++ V +S
Sbjct: 84 PGCFYRLRVYCIS 96
>1va9_A DOWN syndrome cell adhesion molecule like- protein 1B; FNIII
domain, dscaml1 protein, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 122
Score = 34.3 bits (79), Expect = 0.015
Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 29/125 (23%)
Query: 83 TASITTPPD----PPTNLSVNVRSGKTAQIFWSPP----ISGKYSGFKLKVISLSEKTPP 134
++ I+T PP ++++ + ++ Q+ W P +G G+++ S +
Sbjct: 5 SSGISTEEAAPDGPPMDVTLQPVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNG 64
Query: 135 RIIGFTENPPAG---YSLKDLTPGGSYQVQLFSVYDSKESVAYTSR---------NFTTK 182
+ Y+L +L Y V + A+ N TT
Sbjct: 65 QYSIVEMKATGDSEVYTLDNLKKFAQYGVVV---------QAFNRAGTGPSSSEINATTL 115
Query: 183 PNTPG 187
+ P
Sbjct: 116 ESGPS 120
Score = 26.9 bits (60), Expect = 5.4
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 290 SITSNSLRVVWEPPKGFS---EFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSE--GL 344
+TS S++V W+ PK YQ+ PG++ ++ L
Sbjct: 26 PVTSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNL 85
Query: 345 EPGRTYQVLVKTVSGK 360
+ Y V+V+ +
Sbjct: 86 KKFAQYGVVVQAFNRA 101
Score = 26.6 bits (59), Expect = 6.2
Identities = 10/69 (14%), Positives = 21/69 (30%), Gaps = 4/69 (5%)
Query: 195 NETTLLVLWQPSYPAS---IYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAA-FKGLVP 250
++ V W+ + Y++ + Y E + G ++ L
Sbjct: 28 TSQSIQVTWKAPKKELQNGVIRGYQIGYRENSPGSNGQYSIVEMKATGDSEVYTLDNLKK 87
Query: 251 GRAYNISVQ 259
Y + VQ
Sbjct: 88 FAQYGVVVQ 96
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.4 bits (83), Expect = 0.015
Identities = 51/344 (14%), Positives = 100/344 (29%), Gaps = 105/344 (30%)
Query: 47 SRDIKDNIEFSEGLPGTKYDFYLY--YTNSTV-----------HDWLTWTASITTPPDP- 92
+I I + + GT F+ V + +L + T P
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL-MSPIKTEQRQPS 106
Query: 93 -PTNLSVNVRSGKTAQIFWSPPISGKYSGFKLK-VISLSEKTPPRIIGFTENPPAGYSLK 150
T + + R +++ + KY+ +L+ + L + L
Sbjct: 107 MMTRMYIEQRD----RLYNDNQVFAKYNVSRLQPYLKLRQA-----------------LL 145
Query: 151 DLTPGGSYQVQLFSVYDSKESV--AYTSRNFTTKPNTPGKFIVW--FRN----ETTLLVL 202
+L P + V + V S ++ ++ + K I W +N ET L +L
Sbjct: 146 ELRPAKN--VLIDGVLGSGKTWVALDVCLSYKVQCKMDFK-IFWLNLKNCNSPETVLEML 202
Query: 203 WQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTVS 262
+ IDP + NI ++ S
Sbjct: 203 Q------KLLYQ----IDPNWTSR-----------------------SDHSSNIKLRIHS 229
Query: 263 -EDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRV---VWEPPKGFSEFD-KYQVSIN 317
+ E+ R + +P N L V V K ++ F+ ++ +
Sbjct: 230 IQAELR-------RLLKSKPYE----------NCLLVLLNVQNA-KAWNAFNLSCKILLT 271
Query: 318 VRRPGASSTPITKSRDEPTQCDMSEGLEPGRTYQVLVKTVSGKP 361
R + + + S L P +L+K + +P
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP 315
Score = 30.2 bits (67), Expect = 1.4
Identities = 56/361 (15%), Positives = 94/361 (26%), Gaps = 128/361 (35%)
Query: 2 YIIVHGVHG------ANLVIKIPE------------NLSSDNST-----------YRLDY 32
+++ GV G A V + NL + NS Y++D
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 33 -IPAHGHPPPNTTYVSRDIKDNIEFSEGLPGTKYDFYLYYTNS-----TVHDWLTWTA-- 84
+ N I+ E L Y N V + W A
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQA--ELRRLLKSKP------YENCLLVLLNVQNAKAWNAFN 263
Query: 85 -----SITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYS-GFKLKVISLSEKTPPR--- 135
+TT T+ + + S ++ LK + + PR
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 136 --------IIG-FTENPPAGY-----------------SLKDLTPGGSYQV-QLFSVYDS 168
II + A + SL L P ++ SV+
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP- 382
Query: 169 KESVAYTSRNFTTKPNTPGKF--IVWFRNET-------------TLLVLWQPSYPASIYT 213
S + P ++WF +L+ SI +
Sbjct: 383 -PSA-----------HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 214 HYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTVSEDEISTPTTAQ 273
+Y+E + + A + +V YNI +T D++ P Q
Sbjct: 431 ---------------IYLELKVKLEN-EYALHRSIV--DHYNIP-KTFDSDDLIPPYLDQ 471
Query: 274 Y 274
Y
Sbjct: 472 Y 472
Score = 29.1 bits (64), Expect = 3.3
Identities = 57/409 (13%), Positives = 107/409 (26%), Gaps = 158/409 (38%)
Query: 14 VIKIPENLSSDNSTYRL-DYIPAHGHPPPNTT--YVSRDIKDNIEF-SEGL------PGT 63
+I + + T RL + + +V ++ N +F + P
Sbjct: 54 IIMSKDA---VSGTLRLFWTLLSKQE---EMVQKFVEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 64 KYDFYLYYTNSTVHDWLTWTASITTPPDPPTNLS-----VNVR----------------- 101
Y+ + +D N+S + +R
Sbjct: 108 MTRMYIEQRDRLYND---------NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 102 --SGKTA-----------------QIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTEN 142
SGKT +IFW ++L P + E
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFW---------------LNLKNCNSPETV--LEM 201
Query: 143 PPAGYSLKDLTPGGSYQV--QLFSVYDSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLL 200
L+ L YQ+ S D ++ + + + + E LL
Sbjct: 202 ------LQKL----LYQIDPNWTSRSDHSSNIKLRIHSIQAELR---RLLKSKPYENCLL 248
Query: 201 VL---WQPSYPAS--------IYTHYKVSIDPPDAP-ESVLYVEKEGEPPGPAQAAFKGL 248
VL + + T +K D A + + ++ P + K L
Sbjct: 249 VLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV--KSL 306
Query: 249 V-----------PGRAYNISVQTVS------EDEISTPTTAQY-------RTI-----PL 279
+ P + + +S D ++T ++ I L
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366
Query: 280 RP---------LS-FTYDKASITSNSLRVVW------EPPKGFSEFDKY 312
P LS F A I + L ++W + ++ KY
Sbjct: 367 EPAEYRKMFDRLSVFPPS-AHIPTILLSLIWFDVIKSDVMVVVNKLHKY 414
>2edx_A Protein tyrosine phosphatase, receptor type, F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 134
Score = 34.7 bits (80), Expect = 0.016
Identities = 17/113 (15%), Positives = 34/113 (30%), Gaps = 23/113 (20%)
Query: 89 PPDPPTNLSVNVRSGKTAQIFWSPP----ISGKYSGFKLKVISLSEKTPPRIIGFTENPP 144
P PP + T ++ W PP +G + + + ++ + R + +
Sbjct: 18 PSAPPQKVMCVSMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISRE 77
Query: 145 AG-YSLKDLTPGGSYQVQLFSVYDSKESVAYTSR---------NFTTKPNTPG 187
+ L L Y+V + A+T T + P
Sbjct: 78 HSSWDLVGLEKWTEYRVWV---------RAHTDVGPGPESSPVLVRTDEDVPS 121
Score = 28.5 bits (64), Expect = 1.6
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 290 SITSNSLRVVWEPPKGFS---EFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEP 346
S+ S ++RV W PP S +Y V+ + GLE
Sbjct: 29 SMGSTTVRVSWVPPPADSRNGVITQYSVAYEAVDGEDRGRHVVDGISREHSSWDLVGLEK 88
Query: 347 GRTYQVLV 354
Y+V V
Sbjct: 89 WTEYRVWV 96
>1x5g_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 116
Score = 34.2 bits (79), Expect = 0.016
Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 6/76 (7%)
Query: 88 TPPDPPTNLSVNVRSGKTAQIFWSPPIS--GKYSGFKLKVISLSEKTPPRIIGFTENPPA 145
P P NL S + + W P+S G+ +KL + + + +
Sbjct: 16 QLPGPAPNLRAYAASPTSITVTWETPVSGNGEIQNYKLYYMEKGTDKEQDVDVSSHS--- 72
Query: 146 GYSLKDLTPGGSYQVQ 161
Y++ L Y +
Sbjct: 73 -YTINGLKKYTEYSFR 87
>1uen_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, NG-CAM related cell adhesion
molecule, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 125
Score = 33.9 bits (78), Expect = 0.019
Identities = 22/118 (18%), Positives = 35/118 (29%), Gaps = 28/118 (23%)
Query: 89 PPDPPTNLSVNVRSGKTAQIFWSPP----ISGKYSGFKL---KVISLSEKTPPRIIGFTE 141
P P N+ VNV + A++ W P I G G+++ K S S++ I
Sbjct: 14 PMVAPGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQSSSKRNRRHIEKKIL 73
Query: 142 NPPAG---YSLKDLTPGGSYQVQLFSVYDSKESVAYTSR---------NFTTKPNTPG 187
L L P Y + + + F T +
Sbjct: 74 TFQGSKTHGMLPGLEPFSHYTLNV---------RVVNGKGEGPASPDRVFNTPEGSGP 122
Score = 27.0 bits (60), Expect = 4.4
Identities = 18/99 (18%), Positives = 28/99 (28%), Gaps = 9/99 (9%)
Query: 168 SKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPSYPAS---IYTHYKVSIDPPDA 224
S S ++ + PG V N T V W P S Y++ +
Sbjct: 2 SSGSSGHSGEDLPMVA--PGNVRVNVVNSTLAEVHWDPVPLKSIRGHLQGYRIYYWKTQS 59
Query: 225 PESVLYVEKEGE----PPGPAQAAFKGLVPGRAYNISVQ 259
E + GL P Y ++V+
Sbjct: 60 SSKRNRRHIEKKILTFQGSKTHGMLPGLEPFSHYTLNVR 98
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 126
Score = 34.0 bits (78), Expect = 0.022
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 87 TTPPDPPTNLSVNVRSGKTAQIFWSPPIS--GKYSGFKLKVISLSEKTPPRIIGFTENPP 144
T P+ P++L V + + W+PP + G+ + S + + +
Sbjct: 25 TRVPEVPSSLHVRPLV-TSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKVDYKQRY- 82
Query: 145 AGYSLKDLTPGGSYQVQL 162
Y++++L P Y + L
Sbjct: 83 --YTIENLDPSSHYVITL 98
Score = 27.0 bits (60), Expect = 4.8
Identities = 14/69 (20%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 288 KASITSNSLRVVWEPPK-GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEP 346
S+ V W PP+ Y + + P A + + + T E L+P
Sbjct: 35 HVRPLVTSIVVSWTPPENQNIVVRGYAIGYGIGSPHAQTIKVDYKQRYYTI----ENLDP 90
Query: 347 GRTYQVLVK 355
Y + +K
Sbjct: 91 SSHYVITLK 99
>1x5h_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 132
Score = 33.9 bits (78), Expect = 0.022
Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 27/123 (21%)
Query: 83 TASITTPPD----PPTNLSVNVRSGKTAQIFWSPP----ISGKYSGFKLKVISLSEKTPP 134
++ T D P NLS+ VR+ K+ I W PP +G+ +G+K++ S K+
Sbjct: 8 DVAVRTLSDVPSAAPQNLSLEVRNSKSIMIHWQPPAPATQNGQITGYKIRYRKASRKSDV 67
Query: 135 RIIGFTENPPAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSR---------NFTTKPNT 185
+ + ++ L G Y ++ A T + T +
Sbjct: 68 TETLVSGTQLS-QLIEGLDRGTEYNFRV---------AALTINGTGPATDWLSAETFESD 117
Query: 186 PGK 188
+
Sbjct: 118 LDE 120
>3n1f_C Cell adhesion molecule-related/DOWN-regulated BY; binding sites,
calcium, cell adhesion molecules, cell cycle cell LINE,
conserved sequence; 1.60A {Homo sapiens} PDB: 3d1m_C
3n1q_C 3n1m_C 3n1g_C 3n1p_C
Length = 102
Score = 33.5 bits (77), Expect = 0.023
Identities = 11/81 (13%), Positives = 21/81 (25%), Gaps = 5/81 (6%)
Query: 87 TTPPDPPTNLSVNVRSGKTAQIFWSPP----ISGKYSGFKLKVISLSEKTPPRIIGFTEN 142
+TP P S + W+ + GF +
Sbjct: 2 STPITGPHIAYTEAVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVE 61
Query: 143 PPAG-YSLKDLTPGGSYQVQL 162
+ + L P SY +++
Sbjct: 62 GSKQWHMIGHLQPETSYDIKM 82
Score = 27.3 bits (61), Expect = 2.7
Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 4/68 (5%)
Query: 195 NETTLLVLWQP---SYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPG 251
++T +++ W S + + + P D+ Y E L P
Sbjct: 17 SDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGS-KQWHMIGHLQPE 75
Query: 252 RAYNISVQ 259
+Y+I +Q
Sbjct: 76 TSYDIKMQ 83
Score = 27.3 bits (61), Expect = 3.0
Identities = 7/74 (9%), Positives = 22/74 (29%), Gaps = 3/74 (4%)
Query: 290 SITSNSLRVVWEPP---KGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEP 346
+++ + + W + + + S + Q M L+P
Sbjct: 15 AVSDTQIMLKWTYIPSSNNNTPIQGFYIYYRPTDSDNDSDYKRDVVEGSKQWHMIGHLQP 74
Query: 347 GRTYQVLVKTVSGK 360
+Y + ++ +
Sbjct: 75 ETSYDIKMQCFNEG 88
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 118
Score = 33.5 bits (77), Expect = 0.027
Identities = 21/106 (19%), Positives = 34/106 (32%), Gaps = 3/106 (2%)
Query: 167 DSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPE 226
S S ++ SR P+TP + + T+L V WQ Y V + E
Sbjct: 2 SSGSSGSHDSRLTAGVPDTPTRLVFSALGPTSLRVSWQEPRCERPLQGYSVEYQLLNGGE 61
Query: 227 SVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTVSEDEISTPTTA 272
P + L+P +Y V+ S++
Sbjct: 62 ---LHRLNIPNPAQTSVVVEDLLPNHSYVFRVRAQSQEGWGREREG 104
Score = 33.5 bits (77), Expect = 0.027
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 290 SITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMS-EGLEPGR 348
++ SLRV W+ P+ Y V + + P Q + E L P
Sbjct: 28 ALGPTSLRVSWQEPRCERPLQGYSVE---YQLLNGGELHRLNIPNPAQTSVVVEDLLPNH 84
Query: 349 TYQVLVK 355
+Y V+
Sbjct: 85 SYVFRVR 91
Score = 30.8 bits (70), Expect = 0.25
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 6/78 (7%)
Query: 88 TPPDPPTNLSVNVRSGKTAQIFWSPPIS-GKYSGFKLKVISLSEKTPPRIIGFTENPPAG 146
PD PT L + + ++ W P G+ + + PA
Sbjct: 16 GVPDTPTRLVFSALGPTSLRVSWQEPRCERPLQGY---SVEYQLLNGGELHRLNIPNPAQ 72
Query: 147 --YSLKDLTPGGSYQVQL 162
++DL P SY ++
Sbjct: 73 TSVVVEDLLPNHSYVFRV 90
>1cd9_B G-CSF-R, protein (G-CSF receptor); class1 cytokine, hematopoietic
receptor, signal transduction cytokine; HET: NAG; 2.80A
{Mus musculus} SCOP: b.1.2.1 b.1.2.1 PDB: 1pgr_B 1cto_A
1gcf_A
Length = 215
Score = 34.8 bits (79), Expect = 0.027
Identities = 14/119 (11%), Positives = 34/119 (28%), Gaps = 11/119 (9%)
Query: 61 PGTKYDFYLYYTN---STVHDWLTWTASITTPPDPPTNLSVNVRSGKTA------QIFWS 111
++ N S+ L +PP ++++ + + W
Sbjct: 77 LYQYMAIWVQAENMLGSSESPKLCLDPMDVVKLEPPMLQALDIGPDVVSHQPGCLWLSWK 136
Query: 112 PPISGKYSGFKLKVISLSEKTPPRIIGFTENPPAG--YSLKDLTPGGSYQVQLFSVYDS 168
P +Y + ++ + P + + L L Y +Q+ + S
Sbjct: 137 PWKPSEYMEQECELRYQPQLKGANWTLVFHLPSSKDQFELCGLHQAPVYTLQMRCIRSS 195
>4doh_R Interleukin-20 receptor subunit alpha; IL10 family cytokine
receptor complex, alpha helical cytokin beta sandwhich
receptor fold, signaling complex; HET: NAG; 2.80A {Homo
sapiens}
Length = 221
Score = 34.4 bits (78), Expect = 0.030
Identities = 24/188 (12%), Positives = 51/188 (27%), Gaps = 17/188 (9%)
Query: 92 PPTNLSVNVRSGKTAQIFWSPPISGK-----YSGFKLKVISLSEKTPPRIIGFTENPPAG 146
P N++ + K + W+PP + Y+
Sbjct: 11 KPANITFLSINMKN-VLQWTPPEGLQGVKVTYTVQYFIYGQKKWLNKSECRN-INRTYCD 68
Query: 147 YSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTT---KPNTPGKFIVWFRNETTLLVLW 203
S + Y ++ +++ +K S S F P + + ++ +VL
Sbjct: 69 LSAETSDYEHQYYARVRAIWGTKCSKWAESGRFYPFLETQIGPPEVALTTDEKSISVVLT 128
Query: 204 QPSYPASIYTHYKVSIDP--PDAPESVLYVEKEGE-----PPGPAQAAFKGLVPGRAYNI 256
P VS+ + +V + + L P Y +
Sbjct: 129 APEKWKRNPEDLPVSMQQIYSNLKYNVSVLNTKSNRTWSQCVTNHTLVLTWLEPNTLYCV 188
Query: 257 SVQTVSED 264
V++
Sbjct: 189 HVESFVPG 196
>4doh_B Interleukin-20 receptor subunit beta; IL10 family cytokine receptor
complex, alpha helical cytokin beta sandwhich receptor
fold, signaling complex; HET: NAG; 2.80A {Homo sapiens}
Length = 206
Score = 34.7 bits (79), Expect = 0.031
Identities = 32/184 (17%), Positives = 58/184 (31%), Gaps = 20/184 (10%)
Query: 92 PPTNLSVNVRSGKTAQIFWSPPISGK---------YSGFKLKVISLSEKTPPRIIGFTEN 142
P LSV + K + WSP I+ ++ S
Sbjct: 9 APQQLSVLSTNMKH-LLMWSPVIAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEG- 66
Query: 143 PPAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNT--PGKFIVWFRNETTLL 200
P D+T Y +++ + S+ S ++ + +T + ++ L+
Sbjct: 67 -PECDVTDDITATVPYNLRVRATLGSQTSAWSILKHPFNRQSTILTRPGMEITKDGFHLV 125
Query: 201 VLWQPSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQT 260
+ + P + P A E V V G P + + PG AY + QT
Sbjct: 126 IELEDLGPQFEF-LVAYWRREPGAEEHVKMVRSGGIP-----VHLETMEPGAAYCVKAQT 179
Query: 261 VSED 264
+
Sbjct: 180 FVKA 183
Score = 33.1 bits (75), Expect = 0.084
Identities = 29/172 (16%), Positives = 48/172 (27%), Gaps = 9/172 (5%)
Query: 191 VWFRNETTLLVLWQPSYPASIYTHYKVSI----DPPDAPESVLYVEKEGEPPGPAQAAFK 246
V N LL +W P +Y V + + GP
Sbjct: 15 VLSTNMKHLL-MWSPVIAPGETVYYSVEYQGEYESLYTSHIWIPSSWCSLTEGPECDVTD 73
Query: 247 GLVPGRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKGF 306
+ YN+ V+ + S + + + T IT + +V E
Sbjct: 74 DITATVPYNLRVRATLGSQTSAWSILK-HPFNRQSTILTRPGMEITKDGFHLVIELEDLG 132
Query: 307 SEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGRTYQVLVKTVS 358
+F+ + R + K E +EPG Y V +T
Sbjct: 133 PQFEFL---VAYWRREPGAEEHVKMVRSGGIPVHLETMEPGAAYCVKAQTFV 181
>1x5l_A Ephrin type-A receptor 8; FN3 domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 111
Score = 33.1 bits (76), Expect = 0.035
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 7/84 (8%)
Query: 84 ASITTP---PDPPTNLSVNVRSGKTAQIFWSPPIS--GKYSGFKLKVISLSEKTPPRIIG 138
+S ++ P + + + W P G +++K ++
Sbjct: 2 SSGSSGQAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTL 61
Query: 139 FTENPPAGYSLKDLTPGGSYQVQL 162
++ L PG Y Q+
Sbjct: 62 KAVTT--RATVSGLKPGTRYVFQV 83
Score = 27.3 bits (61), Expect = 3.1
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 8/86 (9%)
Query: 178 NFTTKPNTPGK---FIVWFRNETTLLVLWQ-PSYPASIYTHYKVSIDPPDAPESVLYVEK 233
+ ++ P + +T++ +LWQ P P I Y++ D K
Sbjct: 3 SGSSGQAAPSQVVVIRQERAGQTSVSLLWQEPEQPNGIILEYEIKYYEKDKEMQSYSTLK 62
Query: 234 EGEPPGPAQAAFKGLVPGRAYNISVQ 259
+A GL PG Y V+
Sbjct: 63 AVTT----RATVSGLKPGTRYVFQVR 84
>1wfn_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 119
Score = 33.2 bits (76), Expect = 0.036
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 7/94 (7%)
Query: 170 ESVAYTSRNFTTK---PNTPGKFIVWFRNETTLLVLWQ-PSYPASIYTHYKVSIDPPDAP 225
S + + T P G +T+L V WQ P I T Y++S + +
Sbjct: 2 SSGSSGPQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNRT 61
Query: 226 ESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQ 259
+ + P + GL Y I V
Sbjct: 62 NTRVTHYL---PNVTLEYRVTGLTALTTYTIEVA 92
Score = 32.8 bits (75), Expect = 0.051
Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
Query: 83 TASITTP---PDPPTNLSVNVRSGKTAQIFWSPPIS--GKYSGFKLKVISLSEKTPPRII 137
+ T P P +LS + + ++ W P G +G+++ + T R+
Sbjct: 8 PQLVRTHEDVPGPVGHLSFSEILDTSLKVSWQEPGEKNGILTGYRISWEEYNR-TNTRVT 66
Query: 138 GFTENPPAGYSLKDLTPGGSYQVQL 162
+ N Y + LT +Y +++
Sbjct: 67 HYLPNVTLEYRVTGLTALTTYTIEV 91
>1v5j_A KIAA1355 protein, RSGI RUH-008; FN3 domain, human cDNA, structural
genomics, riken structural genomics/proteomics
initiative, cell adhesion; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 108
Score = 33.0 bits (75), Expect = 0.036
Identities = 16/100 (16%), Positives = 30/100 (30%), Gaps = 4/100 (4%)
Query: 89 PPDPPTNLSVNVRSGKTAQIFWSPPISGKY--SGFKLKVISLSEKTPPRIIGFTENPPAG 146
PP L R+ + + W PP G+ L+ + +
Sbjct: 7 GLSPPRGLVAV-RTPRGVLLHWDPPELVPKRLDGYVLEG-RQGSQGWEVLDPAVAGTETE 64
Query: 147 YSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTP 186
+ L Y+ +L + S S + N +T +
Sbjct: 65 LLVPGLIKDVLYEFRLVAFAGSFVSDPSNTANVSTSGLSG 104
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 33.1 bits (76), Expect = 0.038
Identities = 16/110 (14%), Positives = 32/110 (29%), Gaps = 10/110 (9%)
Query: 85 SITTP---PDPPTNLSVNVRSGKTAQIFWSPPIS--GKYSGFKLKVISLSEKTPPRIIGF 139
T P PP + + ++ W PP + G +++ + +
Sbjct: 20 LERTLDDVPGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEV 79
Query: 140 TENPPAGYSLKDLTPGGSYQVQLF---SVYDSKESVAYTSRNFTTKPNTP 186
Y+ L P Y ++ + + A T K + P
Sbjct: 80 LAPSARQYTATGLKPESVYLFRITAQTRKGWGEAAEALVVT--TEKRSGP 127
Score = 30.1 bits (68), Expect = 0.53
Identities = 17/78 (21%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 183 PNTPGKFIVWFRNETTLLVLWQ-PSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPA 241
P P + T++ ++WQ P+ P I Y+++ + VE P
Sbjct: 28 PGPPMGILFPEVRTTSVRLIWQPPAAPNGIILAYQITHRLNTTTANTATVEVL--APSAR 85
Query: 242 QAAFKGLVPGRAYNISVQ 259
Q GL P Y +
Sbjct: 86 QYTATGLKPESVYLFRIT 103
Score = 29.3 bits (66), Expect = 0.88
Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 290 SITSNSLRVVWEPPK---GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEP 346
+ + S+R++W+PP G YQ++ + A++ + Q + GL+P
Sbjct: 38 EVRTTSVRLIWQPPAAPNG--IILAYQITHRLNTTTANTATVEVLAPSARQYTAT-GLKP 94
Query: 347 GRTYQVLVK 355
Y +
Sbjct: 95 ESVYLFRIT 103
>2dmk_A Midline 2 isoform 2; midline defect 2, tripartite motif protein 1,
midin-2, ring finger protein 60, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 127
Score = 33.0 bits (75), Expect = 0.052
Identities = 18/98 (18%), Positives = 34/98 (34%), Gaps = 9/98 (9%)
Query: 267 STPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASST 326
S+ Y T P P S + + + +++ V W Y++ + A+
Sbjct: 5 SSGEGLDYLTAPNPP-SIREELCTASHDTITVHWISDDE-FSISSYELQYTIFTGQANFI 62
Query: 327 PITKSRDEPTQCDMSE-------GLEPGRTYQVLVKTV 357
+ S D + GL+ G Y +VK +
Sbjct: 63 SLYNSVDSWMIVPNIKQNHYTVHGLQSGTRYIFIVKAI 100
>2yux_A Myosin-binding protein C, SLOW-type; fibronectin III domain,
structural genomics., NPPSFA; NMR {Homo sapiens}
Length = 120
Score = 32.7 bits (75), Expect = 0.055
Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 1/84 (1%)
Query: 83 TASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTEN 142
I P PP + + G+ + W+PP + I ++K E+
Sbjct: 11 DIQIIDRPGPPQIVKIEDVWGENVALTWTPPKDDGNAAITGYTIQKADKKSMEWFTVIEH 70
Query: 143 PPA-GYSLKDLTPGGSYQVQLFSV 165
++ +L G Y ++FS
Sbjct: 71 YHRTSATITELVIGNEYYFRVFSE 94
>2dbj_A Proto-oncogene tyrosine-protein kinase MER precursor; C-MER,
receptor tyrosine kinase mertk, FN3 domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 124
Score = 32.9 bits (75), Expect = 0.057
Identities = 12/78 (15%), Positives = 26/78 (33%), Gaps = 5/78 (6%)
Query: 89 PPDPPTNLSVNV-RSGKTAQIFWSPP----ISGKYSGFKLKVISLSEKTPPRIIGFTENP 143
P P N++V + S I W P G+ G+++ + S ++
Sbjct: 18 PSVAPLNVTVFLNESSDNVDIRWMKPPTKQQDGELVGYRISHVWQSAGISKELLEEVGQN 77
Query: 144 PAGYSLKDLTPGGSYQVQ 161
+ + + V+
Sbjct: 78 GSRARISVQVHNATCTVR 95
>1x4z_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 121
Score = 32.3 bits (74), Expect = 0.066
Identities = 19/105 (18%), Positives = 41/105 (39%), Gaps = 8/105 (7%)
Query: 88 TPPDPPTNLSVNVRSGKTAQIFWSPPISG--KYSGFKLKVISLSEKTPPRIIGFTENPPA 145
+PP+ P +++ S + + W P +G F+++ L + + P
Sbjct: 16 SPPEAPDRPTISTASETSVYVTWIPRGNGGFPIQSFRVEYKKLKKVGDWILATSAIPPSR 75
Query: 146 -GYSLKDLTPGGSYQVQLFSVYD---SKESVAYTSRNFTTKPNTP 186
+ L G SY+ ++ ++ S+ S SR + + P
Sbjct: 76 LSVEITGLEKGISYKFRVRALNMLGESEPSAP--SRPYVVSGSGP 118
>1uem_A KIAA1568 protein; immunoglobulin-like beta-sandwich fold,
fibronectin type III, structural genomics; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 117
Score = 32.0 bits (73), Expect = 0.095
Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 3/79 (3%)
Query: 83 TASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKY--SGFKLKVISLSEKTPPRIIGFT 140
++ P PP+ V + + + W P G S + ++ S S + +
Sbjct: 9 NYDLSDLPGPPSKPQVTDVTKNSVTLSWQPGTPGTLPASAYIIEAFSQSVSNSWQTV-AN 67
Query: 141 ENPPAGYSLKDLTPGGSYQ 159
Y+++ L P Y
Sbjct: 68 HVKTTLYTVRGLRPNTIYL 86
Score = 28.1 bits (63), Expect = 2.2
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 5/70 (7%)
Query: 290 SITSNSLRVVWEPPK-GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMS-EGLEPG 347
+T NS+ + W+P G Y + + S + + GL P
Sbjct: 26 DVTKNSVTLSWQPGTPGTLPASAYIIE---AFSQSVSNSWQTVANHVKTTLYTVRGLRPN 82
Query: 348 RTYQVLVKTV 357
Y +V+ +
Sbjct: 83 TIYLFMVRAI 92
>2djs_A Ephrin type-B receptor 1; tyrosine-protein kinase receptor EPH-2,
NET, HEK6, ELK, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 108
Score = 31.7 bits (72), Expect = 0.098
Identities = 10/76 (13%), Positives = 24/76 (31%), Gaps = 4/76 (5%)
Query: 88 TPPDPPTNLSVNVRSGKTAQIFWSPPIS--GKYSGFKLKVISLSEKTPPRIIGFTENPPA 145
+ P + + ++ + W P G ++++ + ++
Sbjct: 6 SGPSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTN-- 63
Query: 146 GYSLKDLTPGGSYQVQ 161
+ L PG Y VQ
Sbjct: 64 TARIDGLRPGMVYVVQ 79
Score = 27.8 bits (62), Expect = 2.1
Identities = 15/78 (19%), Positives = 26/78 (33%), Gaps = 5/78 (6%)
Query: 183 PNTPGKFIVWFRNETTLLVLWQ-PSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPA 241
P+T ++ + W P P I Y++ + E + +
Sbjct: 8 PSTVPIMHQVSATMRSITLSWPQPEQPNGIILDYEIRYYEKEHNEFNSSMARSQTN---- 63
Query: 242 QAAFKGLVPGRAYNISVQ 259
A GL PG Y + V+
Sbjct: 64 TARIDGLRPGMVYVVQVR 81
Score = 27.4 bits (61), Expect = 2.7
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 290 SITSNSLRVVWEPP-KGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGR 348
S T S+ + W P + Y++ + + +R + + GL PG
Sbjct: 18 SATMRSITLSWPQPEQPNGIILDYEIR--YYEKEHNEFNSSMARSQTNTARID-GLRPGM 74
Query: 349 TYQVLV 354
Y V V
Sbjct: 75 VYVVQV 80
>1x5f_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 120
Score = 32.0 bits (73), Expect = 0.099
Identities = 12/79 (15%), Positives = 30/79 (37%), Gaps = 8/79 (10%)
Query: 88 TPPDPPTNLSVNVRSGKTAQIFWSPPIS---GKYSGFKLKVISLSEKTPPRIIGFTENPP 144
P P ++ ++ S + ++ W P S G + + +++ R + P
Sbjct: 16 PLPSAPRDVVASLVSTRFIKLTWRTPASDPHGDNLTYS---VFYTKEGIARERVENTSHP 72
Query: 145 AG--YSLKDLTPGGSYQVQ 161
++++L P Y +
Sbjct: 73 GEMQVTIQNLMPATVYIFR 91
Score = 28.9 bits (65), Expect = 1.2
Identities = 9/68 (13%), Positives = 21/68 (30%), Gaps = 4/68 (5%)
Query: 290 SITSNSLRVVWEPPK--GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPG 347
+++ +++ W P + Y V + G + + + + L P
Sbjct: 28 LVSTRFIKLTWRTPASDPHGDNLTYSVFY--TKEGIARERVENTSHPGEMQVTIQNLMPA 85
Query: 348 RTYQVLVK 355
Y V
Sbjct: 86 TVYIFRVM 93
>2kbg_A N-CAM 2, neural cell adhesion molecule 2; fibronectin type III
module, beta-sheet sandwich, cell membrane,
glycoprotein, immunoglobulin domain; NMR {Homo sapiens}
Length = 114
Score = 31.7 bits (72), Expect = 0.10
Identities = 13/87 (14%), Positives = 28/87 (32%), Gaps = 8/87 (9%)
Query: 83 TASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKY--SGFKLKVISLSEKTPPRIIGFT 140
+ P PP+ + SGK+ ++ + G + ++ K
Sbjct: 2 AEASMREPSPPS-IHGQPSSGKSFKLSITKQDDGGAPILEY---IVKYRSKDKEDQWLEK 57
Query: 141 ENPPAG--YSLKDLTPGGSYQVQLFSV 165
+ L+ L Y+VQ+ +
Sbjct: 58 KVQGNKDHIILEHLQWTMGYEVQITAA 84
Score = 29.8 bits (67), Expect = 0.52
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 5/70 (7%)
Query: 290 SITSNSLRVVWEPPK-GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMS-EGLEPG 347
+ S ++ G + +Y V R + + + + + E L+
Sbjct: 18 PSSGKSFKLSITKQDDGGAPILEYIVK---YRSKDKEDQWLEKKVQGNKDHIILEHLQWT 74
Query: 348 RTYQVLVKTV 357
Y+V +
Sbjct: 75 MGYEVQITAA 84
>2db8_A Tripartite motif protein 9, isoform 2; ring finger protein 91,
TRIM9, KIAA0282, RNF91, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 110
Score = 31.7 bits (72), Expect = 0.11
Identities = 15/69 (21%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 288 KASITSNSLRVVWEPPK-GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEP 346
+ +NS + W+ P D Y + + G + T C + GL
Sbjct: 19 ECCTHNNSATLSWKQPPLSTVPADGYILEL---DDGNGGQFREVYVGKETMCTVD-GLHF 74
Query: 347 GRTYQVLVK 355
TY VK
Sbjct: 75 NSTYNARVK 83
Score = 29.0 bits (65), Expect = 0.90
Identities = 13/108 (12%), Positives = 31/108 (28%), Gaps = 5/108 (4%)
Query: 81 TWTASITTPPDPPTNLSVNVRSGKTAQIFWSPPIS--GKYSGFKLKVISLSEKTPPRIIG 138
+ +S P P L +A + W P G+ ++ L + +
Sbjct: 2 SSGSSGPVPATPILQLEECCTHNNSATLSWKQPPLSTVPADGY---ILELDDGNGGQFRE 58
Query: 139 FTENPPAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTP 186
++ L +Y ++ + + S + T +
Sbjct: 59 VYVGKETMCTVDGLHFNSTYNARVKAFNKTGVSPYSKTLVLQTSEGSG 106
>2haz_A N-CAM 1, neural cell adhesion molecule 1; fibronectin type III
repeat, FN1, beta sandwich; 1.70A {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 31.2 bits (71), Expect = 0.12
Identities = 15/83 (18%), Positives = 31/83 (37%), Gaps = 6/83 (7%)
Query: 88 TPPDPPTNLSVNVRSGKTAQIFWSPPIS---GKYSGFKLKVISLSEKTPPRIIGFTENPP 144
P P+ V S TAQ+ + P + +K + ++ E+ +
Sbjct: 5 DTPSSPSIDQVEPYSS-TAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEAS 63
Query: 145 AG--YSLKDLTPGGSYQVQLFSV 165
++ L P +Y V+L ++
Sbjct: 64 MEGIVTIVGLKPETTYAVRLAAL 86
Score = 28.1 bits (63), Expect = 1.5
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 9/73 (12%)
Query: 288 KASITSNSLRVVWEPPK--GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSE--- 342
+ S++ +V ++ P+ G KY+ R +K D
Sbjct: 14 QVEPYSSTAQVQFDEPEATGGVPILKYKAE---WRAVGEEVWHSKWYDAKEASMEGIVTI 70
Query: 343 -GLEPGRTYQVLV 354
GL+P TY V +
Sbjct: 71 VGLKPETTYAVRL 83
>1wf5_A Sidekick 2 protein; FNIII domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 121
Score = 31.6 bits (72), Expect = 0.12
Identities = 16/84 (19%), Positives = 29/84 (34%), Gaps = 15/84 (17%)
Query: 85 SITTPPDPPTNLSVNVR--SGKTAQIFWSPPISG-----KYSGFKLKVISLSEKTPPRII 137
+ P P + + + + W+ P G +Y ++ +SE P +
Sbjct: 13 RVRQLPHAPEHPVATLSTVERRAINLTWTKPFDGNSPLIRY------ILEMSENNAPWTV 66
Query: 138 GFTENPPAG--YSLKDLTPGGSYQ 159
P ++K L P SYQ
Sbjct: 67 LLASVDPKATSVTVKGLVPARSYQ 90
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 32.8 bits (75), Expect = 0.13
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 14/100 (14%)
Query: 74 STVHDWLTWTASIT--TPPDPPTNLSVNVRSGKTAQIFWSPPIS------GKYSGFKLKV 125
T + PDPP + V+ S + + W+ P S Y +
Sbjct: 181 KNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNY------I 234
Query: 126 ISLSEKTPPRIIGFTENPPAGYSLKDLTPGGSYQVQLFSV 165
+ T R + + Y++ +L SYQ ++ +
Sbjct: 235 VEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRVIAE 274
Score = 30.5 bits (69), Expect = 0.70
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 6/70 (8%)
Query: 290 SITSNSLRVVWEPPK--GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPG 347
++ +S+ + W P G S+ Y V + + + + T+ + L
Sbjct: 209 DVSRDSVNLTWTEPASDGGSKITNYIVE---KCATTAERWLRVGQARETRYTVI-NLFGK 264
Query: 348 RTYQVLVKTV 357
+YQ V
Sbjct: 265 TSYQFRVIAE 274
>2ed7_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 119
Score = 31.6 bits (72), Expect = 0.14
Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 7/78 (8%)
Query: 88 TPPDPPTNLSVNVRSGKTAQIFWSPPIS--GKYSGFKLKVISLSEKTPPRIIGFTENPPA 145
P P ++ + S + ++ W PP G F + S + R P
Sbjct: 16 VLPSAPRDVVPVLVSSRFVRLSWRPPAEAKGNIQTF---TVFFSREGDNRERALNTTQPG 72
Query: 146 G--YSLKDLTPGGSYQVQ 161
++ +L P Y +
Sbjct: 73 SLQLTVGNLKPEAMYTFR 90
Score = 27.4 bits (61), Expect = 3.2
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 5/90 (5%)
Query: 267 STPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPP-KGFSEFDKYQVSINVRRPGASS 325
P +P P ++S +R+ W PP + + V + R
Sbjct: 7 GKPAIPSSSVLPSAPRDVVPV--LVSSRFVRLSWRPPAEAKGNIQTFTVFFS-REGDNRE 63
Query: 326 TPITKSRDEPTQCDMSEGLEPGRTYQVLVK 355
+ ++ Q + L+P Y V
Sbjct: 64 RALNTTQPGSLQLTVG-NLKPEAMYTFRVV 92
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 32.5 bits (74), Expect = 0.20
Identities = 12/75 (16%), Positives = 23/75 (30%)
Query: 85 SITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPP 144
+ P+PP + + + W PP S I E ++
Sbjct: 5 ADVPEPEPPRFPIIENILDEAVILSWKPPALDGGSLVTNYTIEKREAMGGSWSPCAKSRY 64
Query: 145 AGYSLKDLTPGGSYQ 159
+++ L G Y+
Sbjct: 65 TYTTIEGLRAGKQYE 79
>1uey_A KIAA0343 protein; immunoglobulin-like beta-sandwich fold, NG-CAM
related cell adhesion molecule, fibronectin type III
domain, structural genomics; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 127
Score = 31.2 bits (71), Expect = 0.21
Identities = 9/34 (26%), Positives = 17/34 (50%)
Query: 83 TASITTPPDPPTNLSVNVRSGKTAQIFWSPPISG 116
A + P+PP +L + + K+ Q+ W+P
Sbjct: 10 PAPVYDVPNPPFDLELTDQLDKSVQLSWTPGDDN 43
Score = 27.7 bits (62), Expect = 2.6
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 7/104 (6%)
Query: 182 KPNTPGKFIVWFRNETTLLVLWQPSY--PASIYTHYKVSIDPPDAPESVLYVEKEGEPPG 239
PN P + + + ++ + W P + I T + + + + + E G
Sbjct: 16 VPNPPFDLELTDQLDKSVQLSWTPGDDNNSPI-TKFIIEYEDAMHKPGL--WHHQTEVSG 72
Query: 240 PAQAAFKGLVPGRAYNISVQTVSEDEISTP--TTAQYRTIPLRP 281
A L P Y+ V V+ S P + QY T P
Sbjct: 73 TQTTAQLNLSPYVNYSFRVMAVNSIGKSLPSEASEQYLTKASEP 116
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 30.9 bits (70), Expect = 0.21
Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 87 TTPPDPPTNLSVNVRSGKTAQIFWSPPIS--GKYSGFKLKVISLSEKTPPRIIGFTENPP 144
+ PD P++L V + W+PP++ G+ + S + +
Sbjct: 15 SQVPDQPSSLHVRP-QTNCIIMSWTPPLNPNIVVRGYIIGYGVGSPYAETVRVDSKQRY- 72
Query: 145 AGYSLKDLTPGGSYQVQL 162
YS++ L Y + L
Sbjct: 73 --YSIERLESSSHYVISL 88
Score = 27.0 bits (60), Expect = 4.0
Identities = 14/110 (12%), Positives = 29/110 (26%), Gaps = 8/110 (7%)
Query: 170 ESVAYTSRNFTTKPNTPGK--FIVWFRNETTLLVLWQ-PSYPASIYTHYKVSIDPPDAPE 226
S + N + P + + +++ W P P + Y +
Sbjct: 2 SSGSSGPENDLDESQVPDQPSSLHVRPQTNCIIMSWTPPLNPNIVVRGYIIGYGVGSPYA 61
Query: 227 SVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTVSEDEISTPTTAQYRT 276
+ V + + L Y IS++ + P T
Sbjct: 62 ETVRV-----DSKQRYYSIERLESSSHYVISLKAFNNAGEGVPLYESATT 106
Score = 27.0 bits (60), Expect = 5.2
Identities = 13/69 (18%), Positives = 23/69 (33%), Gaps = 5/69 (7%)
Query: 288 KASITSNSLRVVWEPPK-GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEP 346
+N + + W PP Y + V P A + + + + E LE
Sbjct: 25 HVRPQTNCIIMSWTPPLNPNIVVRGYIIGYGVGSPYAETVRVDSKQRYYSI----ERLES 80
Query: 347 GRTYQVLVK 355
Y + +K
Sbjct: 81 SSHYVISLK 89
>1x3d_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 118
Score = 30.8 bits (70), Expect = 0.22
Identities = 16/102 (15%), Positives = 34/102 (33%), Gaps = 16/102 (15%)
Query: 86 ITTPPDPPTNLSVNVRSGKTAQIFWSPPISG-----KYSGFKLKVISLSEKTPPRIIGFT 140
++ PD P + R+ + + W P + + E +
Sbjct: 14 LSCEPDIPNPPRIANRTKNSLTLQWKAPSDNGSKIQNFVLEWDEGKGNGEFCQCYMGSQK 73
Query: 141 ENPPAGYSLKDLTPGGSYQVQLFSVYD------SKESVAYTS 176
+ + + L+P + +L + D S+E + YTS
Sbjct: 74 Q-----FKITKLSPAMGCKFRLSARNDYGTSGFSEEVLYYTS 110
Score = 29.3 bits (66), Expect = 0.79
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 4/67 (5%)
Query: 290 SITSNSLRVVWEPPK-GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPGR 348
+ T NSL + W+ P S+ + + G + + + L P
Sbjct: 28 NRTKNSLTLQWKAPSDNGSKIQNFVLE---WDEGKGNGEFCQCYMGSQKQFKITKLSPAM 84
Query: 349 TYQVLVK 355
+ +
Sbjct: 85 GCKFRLS 91
>1wfu_A Unnamed protein product; FN3 domain, similar to 1700007B22RIK
protein, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Mus musculus}
SCOP: b.1.2.1
Length = 120
Score = 30.7 bits (69), Expect = 0.23
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 2/71 (2%)
Query: 290 SITSNSLRVVWEPPK--GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPG 347
+T +S+ + W+ + + + ++ + EGLEP
Sbjct: 26 KVTHHSIELYWDLEQKEKRQGPQEQWLRFSIEEEDPKMHSYGVIYTGYATRHVVEGLEPR 85
Query: 348 RTYQVLVKTVS 358
Y+ +K S
Sbjct: 86 TLYKFRLKVTS 96
Score = 26.8 bits (59), Expect = 6.1
Identities = 18/118 (15%), Positives = 37/118 (31%), Gaps = 7/118 (5%)
Query: 73 NSTVHDWLTWTASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVIS-LSEK 131
+S + P PP V S +++W K G + + + E+
Sbjct: 2 SSGSSGMEPHKVVPLSKPHPPVVGKVTHHS---IELYWDLEQKEKRQGPQEQWLRFSIEE 58
Query: 132 TPPRIIGFTE---NPPAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNTP 186
P++ + + ++ L P Y+ +L S E + T +
Sbjct: 59 EDPKMHSYGVIYTGYATRHVVEGLEPRTLYKFRLKVTSPSGEYEYSPVVSVATTRESG 116
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 31.7 bits (72), Expect = 0.23
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 8/92 (8%)
Query: 81 TWTASIT--TPPDPPTNLSVNVRSGKTAQIFWSPPISGKYS---GFKLKVISLSEKTPPR 135
+ + P P+ V TAQ+ + P + +K + ++ E+
Sbjct: 103 SLEFILVQADTPSSPSIDQVEP-YSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHS 161
Query: 136 IIGFTENPPAG--YSLKDLTPGGSYQVQLFSV 165
+ ++ L P +Y V+L ++
Sbjct: 162 KWYDAKEASMEGIVTIVGLKPETTYAVRLAAL 193
Score = 30.2 bits (68), Expect = 0.80
Identities = 12/71 (16%), Positives = 29/71 (40%), Gaps = 3/71 (4%)
Query: 288 KASITSNSLRVVWEPPK--GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMS-EGL 344
+ S++ +V ++ P+ G KY+ + +++ + ++ GL
Sbjct: 121 QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEGIVTIVGL 180
Query: 345 EPGRTYQVLVK 355
+P TY V +
Sbjct: 181 KPETTYAVRLA 191
>1wis_A KIAA1514 protein; FNIII domain, sidekick-2, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 124
Score = 30.8 bits (70), Expect = 0.27
Identities = 19/77 (24%), Positives = 31/77 (40%), Gaps = 6/77 (7%)
Query: 89 PPDPPTNLSVNVRSGKTAQIFWSPPISGKY--SGFKL--KVISLSEKTPPRIIGFTENPP 144
P PPTNL ++ ++ + + P GK S + + +V + E +I N P
Sbjct: 17 LPGPPTNLGISNIGPRSVTLQFRPGYDGKTSISRWLVEAQVGVVGEGEEWLLIHQLSNEP 76
Query: 145 AG--YSLKDLTPGGSYQ 159
+ DL P Y
Sbjct: 77 DARSMEVPDLNPFTCYS 93
Score = 29.2 bits (66), Expect = 0.93
Identities = 21/121 (17%), Positives = 40/121 (33%), Gaps = 7/121 (5%)
Query: 167 DSKESVAYTSRNFTTKPNTPGKFIVWFRNETTLLVLWQPSYP--ASIYTHYKVSIDPPDA 224
S S +S P P + ++ + ++P Y SI + + V
Sbjct: 2 SSGSSGTISSGVPPELPGPPTNLGISNIGPRSVTLQFRPGYDGKTSI-SRWLVEAQVGVV 60
Query: 225 PES--VLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTVSEDEISTP--TTAQYRTIPLR 280
E L + + P L P Y+ ++ V+ S P + + +T+
Sbjct: 61 GEGEEWLLIHQLSNEPDARSMEVPDLNPFTCYSFRMRQVNIVGTSPPSQPSRKIQTLQSG 120
Query: 281 P 281
P
Sbjct: 121 P 121
>1ujt_A KIAA1568 protein; fibronectin type III domain, structural genomics,
riken structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 120
Score = 30.6 bits (69), Expect = 0.28
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 1/66 (1%)
Query: 195 NETTLLVLWQPSYPASIYTHYKVSIDP-PDAPESVLYVEKEGEPPGPAQAAFKGLVPGRA 253
TT+ V W Y+V + + + + P A L G
Sbjct: 28 TPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLVNLKKGVT 87
Query: 254 YNISVQ 259
Y I V+
Sbjct: 88 YEIKVR 93
Score = 28.3 bits (63), Expect = 2.0
Identities = 11/67 (16%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 291 ITSNSLRVVWEPPKGFSEFDKYQV---SINVRRPGASSTPITKSRDEPTQCDMSEGLEPG 347
+T +++V W + Y+V + + +S + + L+ G
Sbjct: 27 LTPTTVQVTWTVDRQPQFIQGYRVMYRQTSGLQATSSWQNLDAKVPTERSAVLV-NLKKG 85
Query: 348 RTYQVLV 354
TY++ V
Sbjct: 86 VTYEIKV 92
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 30.0 bits (68), Expect = 0.35
Identities = 16/70 (22%), Positives = 27/70 (38%), Gaps = 6/70 (8%)
Query: 288 KASITSNSLRVVWEPPK--GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLE 345
+ + +++ W PP G S Y V P P + +C +S L
Sbjct: 18 QGRPKAKEIQLRWGPPLVDGGSPISCYSVE---MSPIEKDEPREVYQGSEVECTVS-SLL 73
Query: 346 PGRTYQVLVK 355
PG+TY ++
Sbjct: 74 PGKTYSFRLR 83
Score = 29.6 bits (67), Expect = 0.45
Identities = 17/91 (18%), Positives = 30/91 (32%), Gaps = 15/91 (16%)
Query: 83 TASITTPPDPPTNLSVNVRSGKT-AQIFWSPP-------ISGKYSGFKLKVISLSEKTPP 134
++ + PP P + R Q+ W PP IS Y + +S
Sbjct: 2 SSGSSGPPGPCLPPRLQGRPKAKEIQLRWGPPLVDGGSPISC-Y------SVEMSPIEKD 54
Query: 135 RIIGFTENPPAGYSLKDLTPGGSYQVQLFSV 165
+ ++ L PG +Y +L +
Sbjct: 55 EPREVYQGSEVECTVSSLLPGKTYSFRLRAA 85
>1bpv_A Titin, A71, connectin; fibronectin type III; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 112
Score = 30.0 bits (68), Expect = 0.46
Identities = 12/69 (17%), Positives = 27/69 (39%), Gaps = 6/69 (8%)
Query: 290 SITSNSLRVVWEPPK--GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMS-EGLEP 346
+IT +++ + W P+ G + Y V +R + + + + + + GL
Sbjct: 21 NITRHTVTLKWAKPEYTGGFKITSYIVE---KRDLPNGRWLKANFSNILENEFTVSGLTE 77
Query: 347 GRTYQVLVK 355
Y+ V
Sbjct: 78 DAAYEFRVI 86
Score = 28.8 bits (65), Expect = 0.96
Identities = 13/88 (14%), Positives = 32/88 (36%), Gaps = 16/88 (18%)
Query: 87 TTPPDPPTNLSVNVRSGKTAQIFWSPP-------ISGKYSGFKLKVISLSEKTPPRIIGF 139
++P DPP + T + W+ P I+ Y ++ + R +
Sbjct: 8 SSPIDPPGKPVPLNITRHTVTLKWAKPEYTGGFKITS-Y------IVEKRDLPNGRWLKA 60
Query: 140 TENPPAG--YSLKDLTPGGSYQVQLFSV 165
+ +++ LT +Y+ ++ +
Sbjct: 61 NFSNILENEFTVSGLTEDAAYEFRVIAK 88
>1x5x_A Fibronectin type-III domain containing protein 3A; structural
genomics, KIAA0970, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 109
Score = 29.6 bits (67), Expect = 0.51
Identities = 12/83 (14%), Positives = 30/83 (36%), Gaps = 1/83 (1%)
Query: 84 ASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENP 143
+S ++ P P + + + WS P ++ + E+T +
Sbjct: 2 SSGSSGPSMPASPVLTKAGITWLSLQWSKPSGTPSDEGISYILEMEEETSGYGFKPKYDG 61
Query: 144 PA-GYSLKDLTPGGSYQVQLFSV 165
Y++K+L Y+ ++ +
Sbjct: 62 EDLAYTVKNLRRSTKYKFKVIAY 84
Score = 28.5 bits (64), Expect = 1.2
Identities = 10/70 (14%), Positives = 16/70 (22%), Gaps = 5/70 (7%)
Query: 290 SITSNSLRVVWEPPK--GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPG 347
L + W P E Y + + + K E + L
Sbjct: 18 KAGITWLSLQWSKPSGTPSDEGISYILEM--EEETSGYGFKPKYDGEDLAY-TVKNLRRS 74
Query: 348 RTYQVLVKTV 357
Y+ V
Sbjct: 75 TKYKFKVIAY 84
>3tgx_A Interleukin-21 receptor; class I cytokine, class I cytokine
receptor, sugarbridge, fibronectine domain, signaling,
cytokine-cytokine receptor; HET: MAN FUL NAG BMA FUC;
2.80A {Homo sapiens}
Length = 219
Score = 30.9 bits (69), Expect = 0.52
Identities = 18/159 (11%), Positives = 47/159 (29%), Gaps = 21/159 (13%)
Query: 22 SSDNSTYRLDYIPAHGHPPPNTTYVSRDIKDNIEFSEGLPGTKYDFYLYYTNSTVHDWLT 81
S+ T++ Y + + S + ++ + + ++ + D
Sbjct: 26 STLTLTWQDQYEELKDEATSCSLHRSAHNATHATYTCHMDVFHFMADDIFSV-QITDQSG 84
Query: 82 WTASITTP--------PDPPTNLSVNVRSGKTAQIFWSPPISGKYSG-------FKLKVI 126
+ P PP +++V QI W ++L+
Sbjct: 85 QYSQECGSFLLAESIKPAPPFDVTVT--FSGQYQISWRSDYEDPAFYMLKGKLQYELQYR 142
Query: 127 SLS---EKTPPRIIGFTENPPAGYSLKDLTPGGSYQVQL 162
+ +P R + ++ + SY++Q+
Sbjct: 143 NRGDPWAVSPRRKLISVDSRSVSLLPLEFRKDSSYELQV 181
>1axi_B HGHBP, growth hormone receptor; complex (hormone-receptor), complex
(hormone-receptor) compl; 2.10A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1a22_B 1kf9_B 1hwg_B 1hwh_B 3hhr_B
2aew_A
Length = 236
Score = 30.9 bits (69), Expect = 0.53
Identities = 30/205 (14%), Positives = 53/205 (25%), Gaps = 22/205 (10%)
Query: 168 SKESVAYTSRNFTTKPNTPGK---FIVWFRNETTLLVLWQP------SYPASIYTHYKVS 218
S+ + S N K N+ G+ T W I Y
Sbjct: 12 SRAPWSLQSVNPGLKTNSSGEPKFTKCRSPERETFSCHWTDEVHHGTKNEGPIQLFYTRR 71
Query: 219 IDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPGRAYNISVQTVSE--DEISTPTTAQYRT 276
E + Y I + + DE +
Sbjct: 72 NTQEWTQEWKECPDYVSAGENSCYFNSSFTSIAIPYCIKLTSNGGTVDEKCFSVDEIVQP 131
Query: 277 IPLRPLSFTYDKASIT--SNSLRVVWEPP-----KGFSEFDKYQVSINVRRPGASSTPIT 329
P L++T S+T ++V WE P + +Y++ + +
Sbjct: 132 DPPIALNWTLLNVSLTGIHADIQVRWEAPRNADIQKGWMVLEYELQY---KEVNETKWKM 188
Query: 330 KSRDEPTQCDMSEGLEPGRTYQVLV 354
T + L+ + Y+V V
Sbjct: 189 MDPILTTSVPVY-SLKVDKEYEVRV 212
Score = 27.9 bits (61), Expect = 5.1
Identities = 4/33 (12%), Positives = 6/33 (18%)
Query: 81 TWTASITTPPDPPTNLSVNVRSGKTAQIFWSPP 113
T P +T W+
Sbjct: 21 VNPGLKTNSSGEPKFTKCRSPERETFSCHWTDE 53
>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function;
1.80A {Homo sapiens} PDB: 3ch8_A
Length = 195
Score = 30.7 bits (68), Expect = 0.54
Identities = 22/86 (25%), Positives = 35/86 (40%), Gaps = 12/86 (13%)
Query: 196 ETTLLVLWQPSYPASIYTHYKVSIDPP--DAPESVLYVEKEGEPPGPAQAAFKGLVPGRA 253
T+LL+ W ++Y+++ ++P V P + A GL PG
Sbjct: 117 PTSLLISWDA--SYYGVSYYRITYGETGGNSPVQEFTV-----PYSSSTATISGLKPGVD 169
Query: 254 YNISVQTVSEDEIST---PTTAQYRT 276
Y I+V S+ S P + YRT
Sbjct: 170 YTITVYAYSDYYGSHHYSPISINYRT 195
>1x4y_A Biregional cell adhesion molecule-related/DOWN- regulated oncogenes
(CDON)binding...; fibronectin type III, FN3; NMR {Mus
musculus} SCOP: b.1.2.1
Length = 114
Score = 29.8 bits (67), Expect = 0.55
Identities = 18/85 (21%), Positives = 33/85 (38%), Gaps = 7/85 (8%)
Query: 195 NETTLLVLWQ---PSYPASIYTHYKVSIDPPDAPESVLYVEKEGEPPGPAQAAFKGLVPG 251
NETT+++ W S + + + P D+ Y +K+ + L P
Sbjct: 21 NETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDY-KKDMVEGDRYWHSISHLQPE 79
Query: 252 RAYNISVQTVSED---EISTPTTAQ 273
+Y+I +Q +E E S +
Sbjct: 80 TSYDIKMQCFNEGGESEFSNVMICE 104
Score = 29.4 bits (66), Expect = 0.71
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 5/79 (6%)
Query: 89 PPDPPTNLSVNVRSGKTAQIFWSPP----ISGKYSGFKLKV-ISLSEKTPPRIIGFTENP 143
P P + + T + W + GF + + S+ E
Sbjct: 8 PVAGPYITFTDAVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGD 67
Query: 144 PAGYSLKDLTPGGSYQVQL 162
+S+ L P SY +++
Sbjct: 68 RYWHSISHLQPETSYDIKM 86
Score = 26.7 bits (59), Expect = 6.6
Identities = 5/74 (6%), Positives = 20/74 (27%), Gaps = 3/74 (4%)
Query: 290 SITSNSLRVVWEPP---KGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEP 346
++ ++ + W + + + S + L+P
Sbjct: 19 AVNETTIMLKWMYIPASNNNTPIHGFYIYYRPTDSDNDSDYKKDMVEGDRYWHSISHLQP 78
Query: 347 GRTYQVLVKTVSGK 360
+Y + ++ +
Sbjct: 79 ETSYDIKMQCFNEG 92
>2ede_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 114
Score = 29.3 bits (66), Expect = 0.84
Identities = 18/80 (22%), Positives = 29/80 (36%), Gaps = 5/80 (6%)
Query: 87 TTPPDPPTNLSVNVRSGK--TAQIFWSPPIS--GKYSGFKLKVISLSEKTPPRIIGFTEN 142
+ P P +L+V R GK + W PP+ GK + + L I T +
Sbjct: 6 SGPTSAPKDLTVITREGKPRAVIVSWQPPLEANGKITAYILFYTLDKNIPIDDWIMETIS 65
Query: 143 PPA-GYSLKDLTPGGSYQVQ 161
+ + DL Y +
Sbjct: 66 GDRLTHQIMDLNLDTMYYFR 85
>2dm4_A Sortilin-related receptor; beta-sandwich, sorting protein-related
receptor containing LDLR class A repeats, sorla; NMR
{Homo sapiens}
Length = 108
Score = 28.6 bits (64), Expect = 1.3
Identities = 15/78 (19%), Positives = 30/78 (38%), Gaps = 8/78 (10%)
Query: 88 TPPDPPTNLSVNVRSGKTAQIF--WSPPIS--GKYSGFKLKVISLSEKTPPRIIGFTENP 143
+ PD P NL +++ I W+PPI G + ++ ++ ++
Sbjct: 6 SGPDAPRNLQLSLPREAEGVIVGHWAPPIHTHGLIREYIVEY----SRSGSKMWASQRAA 61
Query: 144 PAGYSLKDLTPGGSYQVQ 161
+K+L Y V+
Sbjct: 62 SNFTEIKNLLVNTLYTVR 79
>1oww_A FN, fibronectin first type III module, CIG; fibronectin type III
module, structural protein; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 98
Score = 28.2 bits (62), Expect = 1.3
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 1/80 (1%)
Query: 86 ITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPRIIGFTENPPA 145
+ + ++ + I W+ P S + L+ + +
Sbjct: 3 LGSSGPVEVFITETPSQPNSHPIQWNAPQPSHISKYILRWRPKNSVGRWKEATI-PGHLN 61
Query: 146 GYSLKDLTPGGSYQVQLFSV 165
Y++K L PG Y+ QL S+
Sbjct: 62 SYTIKGLKPGVVYEGQLISI 81
Score = 25.9 bits (56), Expect = 9.3
Identities = 16/79 (20%), Positives = 30/79 (37%), Gaps = 5/79 (6%)
Query: 280 RPLSFTYDKASITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCD 339
P+ + NS + W P+ S KY + RP S ++
Sbjct: 7 GPVEVFITETPSQPNSHPIQWNAPQP-SHISKYILR---WRPKNSVGRWKEATIPGHLNS 62
Query: 340 MS-EGLEPGRTYQVLVKTV 357
+ +GL+PG Y+ + ++
Sbjct: 63 YTIKGLKPGVVYEGQLISI 81
>2dn7_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.2.1
Length = 107
Score = 28.1 bits (63), Expect = 1.9
Identities = 18/77 (23%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 88 TPPDPPTNLSVNVRSGKTAQIFWSPPIS--GKYSGFKLKVISLSEKTPPRIIGFTENPPA 145
+ P PT + TA + W PP G+ G++L+ E P I ++
Sbjct: 6 SGPGRPTMMISTTAMN-TALLQWHPPKELPGELLGYRLQYCRADEARPNTIDFGKDDQ-- 62
Query: 146 GYSLKDLTPGGSYQVQL 162
+++ L G +Y +L
Sbjct: 63 HFTVTGLHKGTTYIFRL 79
Score = 27.0 bits (60), Expect = 4.4
Identities = 15/67 (22%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 289 ASITSNSLRVVWEPPK-GFSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMSEGLEPG 347
++ N+ + W PPK E Y++ + P T + Q GL G
Sbjct: 16 STTAMNTALLQWHPPKELPGELLGYRLQ---YCRADEARPNTIDFGKDDQHFTVTGLHKG 72
Query: 348 RTYQVLV 354
TY +
Sbjct: 73 TTYIFRL 79
>1y6k_R Interleukin-10 receptor alpha chain; helix bundle, receptor
complex, immune system; 2.52A {Homo sapiens} SCOP:
b.1.2.1 b.1.2.1 PDB: 1j7v_R* 1lqs_R 1y6m_R 1y6n_R
Length = 214
Score = 28.6 bits (63), Expect = 2.4
Identities = 21/127 (16%), Positives = 35/127 (27%), Gaps = 25/127 (19%)
Query: 248 LVPGRAYNISVQTVSEDEISTPTTAQ----YRTIPLRPLSFTYDKASITSNSLRVVWEPP 303
L Y V+ V S T + L S I + + + P
Sbjct: 69 LYHSNGYRARVRAVDGSRHSQWTVTNTRFSVDEVTLTVGSVNL---EIHNGFILGKIQLP 125
Query: 304 KG------------FSEFDKYQVSINVRRPGASSTPITKSRDEPTQCDMS-EGLEPGRTY 350
+ FS F +Y+++I R+ T + + S +
Sbjct: 126 RPKMAPAQDTYESIFSHFREYEIAI--RKVPGQFT---FTHKKVKHEQFSLLTSGEVGEF 180
Query: 351 QVLVKTV 357
V VK
Sbjct: 181 CVQVKPS 187
>1wj3_A KIAA1496 protein; beta sandwich, PANG, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
neuropeptide; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 117
Score = 27.9 bits (62), Expect = 2.4
Identities = 12/77 (15%), Positives = 25/77 (32%), Gaps = 10/77 (12%)
Query: 89 PPDPPTNLSVNVRSGKTAQIFWSPPIS----GKYSGFKLKVISLSEKTPPRIIGFTENPP 144
P PP N+ N + + W + + +G+K+ + S+ N
Sbjct: 18 PSQPPGNVVWNA-TDTKVLLNWEQVKAMENESEVTGYKVFYRTSSQNNV-----QVLNTN 71
Query: 145 AGYSLKDLTPGGSYQVQ 161
+ L Y ++
Sbjct: 72 KTSAELVLPIKEDYIIE 88
>1xov_A PLY protein, plypsa; alpha/beta hydrolase, multi-domain, hydrolase;
1.80A {Listeria phage psa} SCOP: b.34.11.4 c.56.5.6
Length = 326
Score = 28.7 bits (64), Expect = 2.6
Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 17/149 (11%)
Query: 76 VHDWLTWTASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLKVISLSEKTPPR 135
+ + + SV + S + S PI +G L V ++
Sbjct: 183 LTGKTVAAKNPNRHSGAVVD-SVPMLSKMDFK---SSPIKMYKAGSSLLVYEHNKYWYKA 238
Query: 136 IIGFTENPPAGYSLK-------DLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKP--NTP 186
I N Y K G +V++ S D + V ++ + K +P
Sbjct: 239 YI----NDKLCYIYKSFCISNGKKDAKGRIKVRIKSAKDLRIPVWNNTKLNSGKIKWYSP 294
Query: 187 GKFIVWFRNETTLLVLWQPSYPASIYTHY 215
G + W+ N+ L LW +Y
Sbjct: 295 GTKLSWYDNKKGYLELWYEKDGWYYTANY 323
>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase,
periplasm, beta-helix, glycosidase, EXO-activity; HET:
AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*
Length = 608
Score = 29.2 bits (65), Expect = 2.7
Identities = 17/100 (17%), Positives = 29/100 (29%), Gaps = 19/100 (19%)
Query: 281 PLSFTYDKASITSNSLRVVWEPPKGFSEFDKYQVSINVRRPGASST-------------- 326
P + +S+ +VW+ P+ + YQ+ + G +S
Sbjct: 38 PQQLQVPTLAYDESSIVLVWKAPEDTRKIVDYQIFSAGKLLGKASDNNDNFSPAKPYIDH 97
Query: 327 -----PITKSRDEPTQCDMSEGLEPGRTYQVLVKTVSGKP 361
Q GL+P +YQ VK
Sbjct: 98 FYVNDKDNFQHKIVMQNFTVIGLKPETSYQFTVKAQYADG 137
>2w1n_A O-GLCNACASE NAGJ; hexosaminidase, glycoside hydrolase, fibronectin
type-III, beta-N-acetylglucosaminidase, cohesin,
hydrolase; 1.80A {Clostridium perfringens}
Length = 238
Score = 28.7 bits (63), Expect = 2.7
Identities = 35/225 (15%), Positives = 57/225 (25%), Gaps = 29/225 (12%)
Query: 65 YDFYLYYTNSTVHDWLTWTASITTPPDPPTNLSVNVRSGKTAQIFWSPPISGKYSGFKLK 124
+ + + + + T D V S + GK
Sbjct: 28 ENIEVGVGIDELVNAEAFAYDFTLNYDENAFEYVEAISDDGVFVNAKKIEDGK------V 81
Query: 125 VISLSEKTPPRIIGFTENPPAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTK-- 182
+ +S T + + T G + V SV D + V + T
Sbjct: 82 RVLVSSLTGEPLPAKEVLAKVVLRAEAKTEGSNLSVTNSSVGDGEGLVHEIAGTEKTVNI 141
Query: 183 ---------PNTPGKFIVWFRNETTLLVLWQPSYPASIYTHYKVSIDPPDAPESVLYVEK 233
N F N+ + V W Y + D +K
Sbjct: 142 IEGTSPEIVVNPVRDFKASEINKKNVTVTWTEPETTEGLEGYILYKD----------GKK 191
Query: 234 EGEPPGPAQAA-FKGLVPGRAYNISVQTV-SEDEISTPTTAQYRT 276
E + FK L YN + S E+S+ + RT
Sbjct: 192 VAEIGKDETSYTFKKLNRHTIYNFKIAAKYSNGEVSSKESLTLRT 236
>1x5a_A Ephrin type-A receptor 1; tyrosine-protein kinase receptor, ESK,
fibronectin type III (FN3) domain, structural genomics,
NPPSFA; NMR {Mus musculus} SCOP: b.1.2.1
Length = 107
Score = 27.4 bits (61), Expect = 3.2
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 5/81 (6%)
Query: 84 ASITTPPDPPTNLSVNVRSGKTAQIF--WSPPISGKYSGFKLKVISLSEKTPPRIIGFTE 141
+S ++ + + LS+ + + Q+ W+ G + + + E
Sbjct: 2 SSGSSGAESLSGLSLKLVKKEPRQLELTWAGSRPRNPGGNLSYELHVLNQDEEWHQMVLE 61
Query: 142 NPPAGYSLKDLTPGGSYQVQL 162
L L P +Y V++
Sbjct: 62 PR---VLLTKLQPDTTYIVRV 79
>3zq5_A Phytochrome-like protein CPH1; arginine finger, tandem GAF domain,
receptor, PAS domain, chromophore, sensory transduction;
HET: CYC; 1.95A {Synechocystis SP} PDB: 2vea_A*
Length = 520
Score = 28.5 bits (63), Expect = 3.7
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 183 PNTPGKFIVWFRNETTLLVLW 203
P F++WFR E V W
Sbjct: 430 PIARHNFLLWFRPEVLQTVNW 450
>1jjf_A Xylanase Z, endo-1,4-beta-xylanase Z, 1,4-beta-D-xylan; feruloyl
esterase, ferulic acid esterase, FAE_XYNZ, XYNZ,
structural genomics; 1.75A {Clostridium thermocellum}
SCOP: c.69.1.2 PDB: 1jt2_A*
Length = 268
Score = 27.8 bits (62), Expect = 5.5
Identities = 5/37 (13%), Positives = 9/37 (24%)
Query: 50 IKDNIEFSEGLPGTKYDFYLYYTNSTVHDWLTWTASI 86
I E + + HD+ W +
Sbjct: 214 IGFGQRVHEYCVANNINHVYWLIQGGGHDFNVWKPGL 250
>3dlq_R Interleukin-22 receptor subunit alpha-1; cytokine-receptor complex,
fibronectin-III, cytokine, glycoprotein, polymorphism,
secreted, membrane; 1.90A {Homo sapiens} PDB: 3dgc_R*
Length = 211
Score = 27.0 bits (59), Expect = 8.8
Identities = 22/212 (10%), Positives = 60/212 (28%), Gaps = 31/212 (14%)
Query: 89 PPDPPTNLSVNVRSGKTAQIFWSPPISG-----------KYSGFKLKVISLSEKTPPRII 137
P D ++ + + + W G Y ++ +
Sbjct: 4 PSDLLQHVKFQSSNFEN-ILTWDSGPEGTPDTVYSIEYKTYGERDWVAKKGCQRITRKSC 62
Query: 138 GFTENPPAGYSLKDLTPGGSYQVQLFSVYDSKESVAYTSRNFTTKPNT---PGKFIVWFR 194
T + Y ++ +V S + F++ +T P +
Sbjct: 63 NLTV--------ETGNLTELYYARVTAVSAGGRSATKMTDRFSSLQHTTLKPPDVTCISK 114
Query: 195 NETTLLVLWQPSYPASIYTHYKVSIDP--PDAPESVLYVEKEGEPP----GPAQAAFKGL 248
+ +++ P ++++++ D + + F GL
Sbjct: 115 VRSIQMIVHPTPTPIRAGDGHRLTLEDIFHDLFYHLELQVNRTYQMHLGGKQREYEFFGL 174
Query: 249 VPGRAYNISVQTV--SEDEISTPTTAQYRTIP 278
P + ++ + + + S P + +T+P
Sbjct: 175 TPDTEFLGTIMILVPTWAKESAPYMCRVKTLP 206
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 27.5 bits (61), Expect = 9.5
Identities = 2/39 (5%), Positives = 10/39 (25%)
Query: 61 PGTKYDFYLYYTNSTVHDWLTWTASITTPPDPPTNLSVN 99
D+ + + ++ + I + +
Sbjct: 1206 SQELSDYSTIVIANDKLSFSSFCSEIPSVSLEAHEVMRP 1244
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.133 0.403
Gapped
Lambda K H
0.267 0.0473 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,558,772
Number of extensions: 324092
Number of successful extensions: 1304
Number of sequences better than 10.0: 1
Number of HSP's gapped: 913
Number of HSP's successfully gapped: 384
Length of query: 361
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 266
Effective length of database: 4,049,298
Effective search space: 1077113268
Effective search space used: 1077113268
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.7 bits)