BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4957
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure
Length = 814
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92 REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
++ D C L LNE TLL N++ R++ IYTYV +ILIAVNP+
Sbjct: 56 KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 99
>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal
Structure
Length = 814
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92 REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
++ D C L LNE TLL N++ R++ IYTYV +ILIAVNP+
Sbjct: 56 KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 99
>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal
Structure
Length = 814
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92 REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
++ D C L LNE TLL N++ R++ IYTYV +ILIAVNP+
Sbjct: 56 KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 99
>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure
Length = 858
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92 REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
++ D C L LNE TLL N++ R++ IYTYV +ILIAVNP+
Sbjct: 57 KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 100
>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State
Length = 786
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92 REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
++ D C L LNE TLL N++ R++ IYTYV +ILIAVNP+
Sbjct: 54 KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 97
>pdb|2X51|A Chain A, M6 Delta Insert1
Length = 789
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92 REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
++ D C L LNE TLL N++ R++ IYTYV +ILIAVNP+
Sbjct: 57 KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 100
>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4)
Length = 784
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92 REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
++ D C L LNE TLL N++ R++ IYTYV +ILIAVNP+
Sbjct: 53 KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 96
>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
pdb|4E7S|B Chain B, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State
Length = 798
Score = 50.8 bits (120), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92 REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
++ D C L LNE TLL N++ R++ IYTYV +ILIAVNP+
Sbjct: 66 KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 109
>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor
State
Length = 788
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92 REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
++ D C L LNE TLL N++ R++ IYTYV +ILIAVNP+
Sbjct: 56 KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 99
>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
pdb|4E7Z|B Chain B, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form
Length = 798
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92 REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
++ D C L LNE TLL N++ R++ IYTYV +ILIAVNP+
Sbjct: 66 KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 109
>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State
pdb|2VB6|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta Insert1) Post-Rigor State
( Crystal Form 2)
Length = 788
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92 REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
++ D C L LNE TLL N++ R++ IYTYV +ILIAVNP+
Sbjct: 56 KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 99
>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State
(Mg.Adp.Alf4)
Length = 1052
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 92 REYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
++ D C L LNE TLL N++ R++ IYTYV +ILIAVNP+
Sbjct: 57 KDVEDNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPY 100
>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii
Length = 838
Score = 49.7 bits (117), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 89 PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
P+ + D+ + LNE ++L NLR R+ AG IYTY G IAVNP++
Sbjct: 80 PKFEKLEDMANMTYLNEASVLNNLRGRYTAGLIYTYSGLFCIAVNPYR 127
>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
pdb|2OTG|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key
Mechanical Elements In The Transduction Pathways Of This
Allosteric Motor
Length = 840
Score = 49.3 bits (116), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 31/48 (64%)
Query: 89 PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
P+ + D+ + LNE ++L NLR R+ AG IYTY G IAVNP++
Sbjct: 80 PKFEKLEDMANMTYLNEASVLNNLRGRYTAGLIYTYSGLFCIAVNPYR 127
>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With
Tribromodichloropseudilin
Length = 776
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLF 138
D+ +L LNE + NLR R+N IYTY G L+AVNPFK+
Sbjct: 89 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKII 131
>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentachlorocarbazole
Length = 695
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 28/43 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLF 138
D+ +L LNE + NLR R+N IYTY G L+AVNPFK+
Sbjct: 89 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFKII 131
>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1
pdb|3I5H|A Chain A, The Crystal Structure Of Rigor Like Squid Myosin S1 In The
Absence Of Nucleotide
pdb|3I5I|A Chain A, The Crystal Structure Of Squid Myosin S1 In The Presence
Of So4 2-
pdb|3I5F|A Chain A, Crystal Structure Of Squid Mg.Adp Myosin S1
Length = 839
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ L LNE ++L NLR+R+ +G IYTY G IA+NP++
Sbjct: 87 DMANLTFLNEASILHNLRSRYESGFIYTYSGLFCIAINPYR 127
>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor
pdb|1G8X|B Chain B, Structure Of A Genetically Engineered Molecular Motor
Length = 1010
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 90 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130
>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Resveratrol
Length = 788
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 101 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 141
>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain
From Dictyostelium Discoideum Fused To The Gtpase Domain
Of Dynamin 1 From Rattus Norvegicus
Length = 776
Score = 48.1 bits (113), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 101 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 141
>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N-
Methylanthraniloyl) Nucleotide Bound To Dictyostelium
Discoideum Myosin Motor Domain
Length = 762
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 90 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130
>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp-Metavanadate And Pentabromopseudilin
pdb|2JJ9|A Chain A, Crystal Structure Of Myosin-2 In Complex With Adp-
Metavanadate
pdb|3MJX|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With
Adp- Metavanadate And Blebbistatin
Length = 788
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 101 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 141
>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e
Bound With Mgadp-Alf4
Length = 770
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 90 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130
>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed
With Gdp, Determined As Myosin Fusion
pdb|1JX2|A Chain A, Crystal Structure Of The Nucleotide-Free Dynamin A Gtpase
Domain, Determined As Myosin Fusion
Length = 776
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 101 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 141
>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of
Dictyostellium Myosin Ii
pdb|1FMW|A Chain A, Crystal Structure Of The Mgatp Complex For The Motor
Domain Of Dictyostelium Myosin Ii
Length = 761
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 90 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130
>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Alf4
Length = 770
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 90 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130
>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum
Motor Domain S456y Mutant In Complex With
Adp-Orthovanadate
Length = 692
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 89 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 129
>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With
Bound Mgadp-Befx
Length = 770
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 90 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130
>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated
Inhibition Of Myosin Motor Activity
pdb|4AE3|A Chain A, Crystal Structure Of Ammosamide 272:myosin-2 Motor Domain
Complex
Length = 776
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 89 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 129
>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y
Bound With Mgadp-Befx
Length = 770
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 90 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130
>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 90 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130
>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 90 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130
>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
pdb|2Y8I|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 89 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 129
>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Bef3
pdb|1MND|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mgadp-Alf4
pdb|1MNE|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum
Complexed With Mg-Pyrophosphate
pdb|1VOM|A Chain A, Complex Between Dictyostelium Myosin And Mgadp And
Vanadate At 1.9a Resolution
Length = 762
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 90 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130
>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And
Specificity For Myosin Ii
pdb|3BZ7|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ8|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
pdb|3BZ9|A Chain A, Crystal Structures Of (S)-(-)-Blebbistatin Analogs Bound
To Dictyostelium Discoideum Myosin Ii
Length = 762
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 90 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130
>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With M-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D0Y|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O-Nitrophenyl Aminoethyldiphosphate
Beryllium Fluoride.
pdb|1D0Z|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With P-Nitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1A|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminoethyldiphosphate
Beryllium Trifluoride.
pdb|1D1B|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With O,P-Dinitrophenyl Aminopropyldiphosphate
Beryllium Trifluoride.
pdb|1D1C|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment)
Complexed With N-Methyl-O-Nitrophenyl
Aminoethyldiphosphate Beryllium Trifluoride
Length = 761
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 90 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130
>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYK|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
pdb|3MYL|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The
Gamma- Phosphate Binding Pocket Of Myosin: Structural
And Functional Studies Of Ser236
Length = 762
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 90 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130
>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp
Complexes Of The Dictyostelium Discoideum Myosin Motor
Domain
Length = 762
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 90 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130
>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin
Function By Mutants G680a And G680v Of Dictyostelium
Myosin-2
Length = 758
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 89 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 129
>pdb|1B7T|A Chain A, Myosin Digested By Papain
pdb|1L2O|A Chain A, Scallop Myosin S1-Adp-P-Pdm In The Actin-Detached
Conformation
pdb|1KQM|A Chain A, Scallop Myosin S1-Amppnp In The Actin-Detached
Conformation
pdb|1KWO|A Chain A, Scallop Myosin S1-Atpgammas-P-Pdm In The Actin-Detached
Conformation
Length = 835
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 89 PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
P+ + D+ + LNE ++L NLR+R+ +G IYTY G IAVNP++
Sbjct: 80 PKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYR 127
>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power
Stroke State To 2.6 Angstrom Resolution: Flexibility And
Function In The Head
pdb|1S5G|A Chain A, Structure Of Scallop Myosin S1 Reveals A Novel Nucleotide
Conformation
pdb|1SR6|A Chain A, Structure Of Nucleotide-free Scallop Myosin S1
Length = 840
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 89 PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
P+ + D+ + LNE ++L NLR+R+ +G IYTY G IAVNP++
Sbjct: 80 PKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYR 127
>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|1DFL|B Chain B, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition
State
pdb|2W4T|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4V|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
pdb|2W4W|C Chain C, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
Length = 831
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 89 PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
P+ + D+ + LNE ++L NLR+R+ +G IYTY G IAVNP++
Sbjct: 76 PKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYR 123
>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State
Length = 830
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 89 PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
P+ + D+ + LNE ++L NLR+R+ +G IYTY G IAVNP++
Sbjct: 75 PKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYR 122
>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation
pdb|1KK8|A Chain A, Scallop Myosin (S1-Adp-Befx) In The Actin-Detached
Conformation
Length = 837
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 32/48 (66%)
Query: 89 PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
P+ + D+ + LNE ++L NLR+R+ +G IYTY G IAVNP++
Sbjct: 80 PKFEKLEDMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYR 127
>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In
Pre-power Stroke State
Length = 995
Score = 47.4 bits (111), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 77 LIRDYFYRFLYQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
L RD R + P+ + D+ +L LNE ++L NLR R+ +G IYTY G + +NP+K
Sbjct: 46 LPRDQIQR-MNPPKFSKAEDMAELTCLNEASVLHNLRERYYSGLIYTYSGLFCVVINPYK 104
>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 971
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 89 PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
P+ + D+ +L LNE ++L NLR R+ +G IYTY G + +NP+K
Sbjct: 80 PKFSKVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYK 127
>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To
Tarantula Muscle Thick Filament Cryo-Em 3d-Map
Length = 973
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 89 PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
P+ + D+ +L LNE ++L NLR R+ +G IYTY G + +NP+K
Sbjct: 80 PKFSKVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYK 127
>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment.
pdb|1I84|V Chain V, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of
Chicken Gizzard Smooth Muscle Myosin With Regulatory
Light Chain In The Dephosphorylated State. Only C Alphas
Provided For Regulatory Light Chain. Only Backbone Atoms
Provided For S2 Fragment
Length = 1184
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 89 PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
P+ + D+ +L LNE ++L NLR R+ +G IYTY G + +NP+K
Sbjct: 80 PKFSKVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYK 127
>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
pdb|3J04|D Chain D, Em Structure Of The Heavy Meromyosin Subfragment Of Chick
Smooth Muscle Myosin With Regulatory Light Chain In
Phosphorylated State
Length = 909
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 89 PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
P+ + D+ +L LNE ++L NLR R+ +G IYTY G + +NP+K
Sbjct: 80 PKFSKVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYK 127
>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR1|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Alf4 Bound At The Active Site
pdb|1BR4|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|C Chain C, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|E Chain E, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
pdb|1BR4|G Chain G, Smooth Muscle Myosin Motor Domain-Essential Light Chain
Complex With Mgadp.Bef3 Bound At The Active Site
Length = 820
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 89 PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
P+ + D+ +L LNE ++L NLR R+ +G IYTY G + +NP+K
Sbjct: 80 PKFSKVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYK 127
>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|B Chain B, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|C Chain C, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|D Chain D, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|E Chain E, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
pdb|1BR2|F Chain F, Smooth Muscle Myosin Motor Domain Complexed With
Mgadp.Alf4
Length = 791
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 89 PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
P+ + D+ +L LNE ++L NLR R+ +G IYTY G + +NP+K
Sbjct: 80 PKFSKVEDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYK 127
>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7F|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 3)
pdb|4A7H|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|I Chain I, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7H|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 2)
pdb|4A7L|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|G Chain G, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
pdb|4A7L|J Chain J, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor
Atm 1)
Length = 697
Score = 44.3 bits (103), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 95 PDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
PD L + E +ENL R + +IYTY+G ++I+ NPFK
Sbjct: 11 PDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFK 52
>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|B Chain B, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|C Chain C, Motor Domain Of Myoe, A Class-I Myosin
pdb|1LKX|D Chain D, Motor Domain Of Myoe, A Class-I Myosin
Length = 697
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 95 PDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
PD L + E +ENL R + +IYTY+G ++I+ NPFK
Sbjct: 11 PDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFK 52
>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State
pdb|2DFS|M Chain M, 3-D Structure Of Myosin-V Inhibited State
Length = 1080
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 96 DLCQLPDLNETTLLENLRARF-NAGHIYTYVGSILIAVNPF 135
DL L L+E +L NL+ RF ++ IYTY G +L+A+NP+
Sbjct: 73 DLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPY 113
>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain - Nucleotide-Free
pdb|1W7I|A Chain A, Crystal Structure Of Myosin V Motor Without Nucleotide
Soaked In 10 Mm Mgadp
pdb|1W7J|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light
Chain + Adp-Befx - Near Rigor
Length = 795
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 28/41 (68%), Gaps = 1/41 (2%)
Query: 96 DLCQLPDLNETTLLENLRARF-NAGHIYTYVGSILIAVNPF 135
DL L L+E +L NL+ RF ++ IYTY G +L+A+NP+
Sbjct: 73 DLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPY 113
>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|B Chain B, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|C Chain C, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
pdb|1W8J|D Chain D, Crystal Structure Of Myosin V Motor Domain -
Nucleotide-Free
Length = 766
Score = 40.4 bits (93), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 96 DLCQLPDLNETTLLENLRARF-NAGHIYTYVGSILIAVNPFK 136
DL L L+E +L NL+ RF ++ IYTY G +L+A+NP++
Sbjct: 73 DLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYE 114
>pdb|2W4A|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle
pdb|2W4G|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Stretch Step
pdb|2W4H|M Chain M, Isometrically Contracting Insect Asynchronous Flight
Muscle Quick Frozen After A Quick Release Step
Length = 840
Score = 39.7 bits (91), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 89 PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
P+ + D+ + L+E +L NL+ R+ A IYTY G + VNP+K
Sbjct: 80 PKYDKIEDMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYK 127
>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
pdb|4DB1|B Chain B, Cardiac Human Myosin S1dc, Beta Isoform Complexed With
Mn-Amppnp
Length = 783
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 89 PQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
P+ + D+ L L+E +L NL+ R+ + IYTY G + VNP+K
Sbjct: 82 PKFDKIEDMAMLTFLHEPAVLYNLKDRYGSWMIYTYSGLFCVTVNPYK 129
>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1M8Q|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1MVW|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O18|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O19|S Chain S, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1A|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1B|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1C|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1D|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1E|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1F|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|D Chain D, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|G Chain G, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|J Chain J, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|M Chain M, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
pdb|1O1G|P Chain P, Molecular Models Of Averaged Rigor Crossbridges From
Tomograms Of Insect Flight Muscle
Length = 840
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
D+ + L+E +L NL R+ A IYTY G + VNP+
Sbjct: 87 DMAMMTHLHEPAVLYNLXERYAAWMIYTYSGLFCVTVNPY 126
>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For
The Two Light Chains
Length = 843
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPF 135
D+ + L+E +L NL R+ A IYTY G + VNP+
Sbjct: 90 DMAMMTHLHEPAVLYNLXERYAAWMIYTYSGLFCVTVNPY 129
>pdb|3T5V|B Chain B, Sac3:thp1:sem1 Complex
pdb|3T5V|E Chain E, Sac3:thp1:sem1 Complex
Length = 455
Score = 28.9 bits (63), Expect = 0.97, Method: Composition-based stats.
Identities = 27/81 (33%), Positives = 38/81 (46%), Gaps = 14/81 (17%)
Query: 43 ATSSEEEGKRDFLFYLREKLNDNIWADGFNID-PELIRDYFYRFLYQPQDREYPDLCQLP 101
A+S+ GK+ L YL KLN NI+ F I+ P+L + F F QP+ L
Sbjct: 163 ASSTNIPGKQRILLYLVNKLN-NIY---FRIESPQLCSNIFKNF--QPKS-------MLA 209
Query: 102 DLNETTLLENLRARFNAGHIY 122
NE L + + R+ G Y
Sbjct: 210 HFNEYQLDQQIEYRYLLGRYY 230
>pdb|4GL8|A Chain A, X-Ray Crystal Structure Of A Periplasmic
Oligopeptide-Binding ProteinOLIGOPEPTIDE ABC
TRANSPORTER(OPPAIV) FROM BORRELIA Burgdorferi
pdb|4GL8|B Chain B, X-Ray Crystal Structure Of A Periplasmic
Oligopeptide-Binding ProteinOLIGOPEPTIDE ABC
TRANSPORTER(OPPAIV) FROM BORRELIA Burgdorferi
Length = 529
Score = 28.9 bits (63), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 54 FLFYLREKLNDNIWADGFNIDPELIRDYFYRFLYQPQDREYPDLCQ 99
+ F+LR+ L +W+DG +I E IR + R L + + ++ +
Sbjct: 91 YTFHLRDNL---VWSDGVSITAEGIRKSYLRILDKETGSSFVNMIK 133
>pdb|3OP7|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 1.70
A Resolution
pdb|3P6K|A Chain A, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
pdb|3P6K|B Chain B, Crystal Structure Of A Plp-Dependent Aminotransferase
(Zp_03625122.1) From Streptococcus Suis 89-1591 At 2.07
A Resolution
Length = 375
Score = 28.5 bits (62), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 5 LQQVKVNLTWDETDPDRVEAVSKLMSGDVDEANLKTYLATSS 46
LQ K+N W E P ++VS+L +G E L+T AT +
Sbjct: 52 LQGTKLNYGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGA 93
>pdb|1H4L|A Chain A, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
pdb|1H4L|B Chain B, Structure And Regulation Of The Cdk5-P25(Nck5a) Complex
Length = 292
Score = 27.3 bits (59), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 70 GFNIDPELIRDYFYRFLYQPQDREYPDLCQLPDLN------ETTLLENLRARFNA 118
G ++D +L R +R L P + ++P + +LPD TT L N+ + NA
Sbjct: 205 GNDVDDQLKR--IFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNA 257
>pdb|1UNG|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNG|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|A Chain A, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNH|B Chain B, Structural Mechanism For The Inhibition Of Cdk5-P25 By
Roscovitine, Aloisine And Indirubin.
pdb|1UNL|A Chain A, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|1UNL|B Chain B, Structural Mechanism For The Inhibition Of Cd5-P25 From
The Roscovitine, Aloisine And Indirubin.
pdb|3O0G|A Chain A, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
pdb|3O0G|B Chain B, Crystal Structure Of Cdk5:p25 In Complex With An Atp
Analogue
Length = 292
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 8/55 (14%)
Query: 70 GFNIDPELIRDYFYRFLYQPQDREYPDLCQLPDLN------ETTLLENLRARFNA 118
G ++D +L R +R L P + ++P + +LPD TT L N+ + NA
Sbjct: 205 GNDVDDQLKR--IFRLLGTPTEEQWPSMTKLPDYKPYPMYPATTSLVNVVPKLNA 257
>pdb|3CUE|D Chain D, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|E Chain E, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|J Chain J, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|K Chain K, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|P Chain P, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|Q Chain Q, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|V Chain V, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|W Chain W, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 193
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 5/34 (14%)
Query: 51 KRDFLFYLREKLNDNIWADGFNIDPELIRDYFYR 84
+RDF K+ND++++ G+NI LI D+ R
Sbjct: 46 ERDF-----NKVNDHLYSMGYNIGCRLIEDFLAR 74
>pdb|1Y7Q|A Chain A, Mammalian Scan Domain Dimer Is A Domain-Swapped
Homologue Of The Hiv Capsid C-Terminal Domain
pdb|1Y7Q|B Chain B, Mammalian Scan Domain Dimer Is A Domain-Swapped
Homologue Of The Hiv Capsid C-Terminal Domain
Length = 98
Score = 26.2 bits (56), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 74 DPELIRDYFYRFLYQ 88
DPEL R F RF YQ
Sbjct: 7 DPELCRQSFRRFCYQ 21
>pdb|4GJI|A Chain A, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With L-Rhamnopyranose
pdb|4GJI|B Chain B, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With L-Rhamnopyranose
pdb|4GJI|C Chain C, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With L-Rhamnopyranose
pdb|4GJI|D Chain D, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With L-Rhamnopyranose
pdb|4GJJ|A Chain A, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With D-Allopyranose
pdb|4GJJ|B Chain B, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With D-Allopyranose
pdb|4GJJ|C Chain C, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With D-Allopyranose
pdb|4GJJ|D Chain D, Crystal Structure Of Pseudomonas Stutzeri L-Rhamnose
Isomerase Mutant H101n In Complex With D-Allopyranose
Length = 438
Score = 25.8 bits (55), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 19/41 (46%)
Query: 1 MNSALQQVKVNLTWDETDPDRVEAVSKLMSGDVDEANLKTY 41
+ A V +N+ WD+ DP ++A + D N T+
Sbjct: 91 LTRATPNVSLNIPWDKADPKELKARGDALGLGFDAMNSNTF 131
>pdb|1K3F|A Chain A, Uridine Phosphorylase From E. Coli, Refined In The
Monoclinic Crystal Lattice
pdb|1K3F|B Chain B, Uridine Phosphorylase From E. Coli, Refined In The
Monoclinic Crystal Lattice
pdb|1K3F|C Chain C, Uridine Phosphorylase From E. Coli, Refined In The
Monoclinic Crystal Lattice
pdb|1K3F|D Chain D, Uridine Phosphorylase From E. Coli, Refined In The
Monoclinic Crystal Lattice
pdb|1K3F|E Chain E, Uridine Phosphorylase From E. Coli, Refined In The
Monoclinic Crystal Lattice
pdb|1K3F|F Chain F, Uridine Phosphorylase From E. Coli, Refined In The
Monoclinic Crystal Lattice
pdb|1RXC|A Chain A, E. Coli Uridine Phosphorylase: 5-Fluorouracil
Ribose-1-Phosphate Complex
pdb|1RXC|B Chain B, E. Coli Uridine Phosphorylase: 5-Fluorouracil
Ribose-1-Phosphate Complex
pdb|1RXC|C Chain C, E. Coli Uridine Phosphorylase: 5-Fluorouracil
Ribose-1-Phosphate Complex
pdb|1RXC|D Chain D, E. Coli Uridine Phosphorylase: 5-Fluorouracil
Ribose-1-Phosphate Complex
pdb|1RXC|E Chain E, E. Coli Uridine Phosphorylase: 5-Fluorouracil
Ribose-1-Phosphate Complex
pdb|1RXC|F Chain F, E. Coli Uridine Phosphorylase: 5-Fluorouracil
Ribose-1-Phosphate Complex
pdb|1RXC|G Chain G, E. Coli Uridine Phosphorylase: 5-Fluorouracil
Ribose-1-Phosphate Complex
pdb|1RXC|H Chain H, E. Coli Uridine Phosphorylase: 5-Fluorouracil
Ribose-1-Phosphate Complex
pdb|1RXC|I Chain I, E. Coli Uridine Phosphorylase: 5-Fluorouracil
Ribose-1-Phosphate Complex
pdb|1RXC|J Chain J, E. Coli Uridine Phosphorylase: 5-Fluorouracil
Ribose-1-Phosphate Complex
pdb|1RXC|K Chain K, E. Coli Uridine Phosphorylase: 5-Fluorouracil
Ribose-1-Phosphate Complex
pdb|1RXC|L Chain L, E. Coli Uridine Phosphorylase: 5-Fluorouracil
Ribose-1-Phosphate Complex
pdb|1RXS|A Chain A, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|AA Chain a, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|B Chain B, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|BB Chain b, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|C Chain C, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|CC Chain c, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|D Chain D, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|DD Chain d, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|E Chain E, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|EE Chain e, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|F Chain F, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|R Chain R, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|G Chain G, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|P Chain P, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|H Chain H, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|HH Chain h, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|I Chain I, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|II Chain i, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|J Chain J, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|JJ Chain j, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|K Chain K, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|KK Chain k, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|L Chain L, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|LL Chain l, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|M Chain M, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|MM Chain m, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|N Chain N, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|Q Chain Q, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|O Chain O, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXS|OO Chain o, E. Coli Uridine Phosphorylase: 2'-Deoxyuridine Phosphate
Complex
pdb|1RXU|A Chain A, E. Coli Uridine Phosphorylase: Thymidine Phosphate
Complex
pdb|1RXU|B Chain B, E. Coli Uridine Phosphorylase: Thymidine Phosphate
Complex
pdb|1RXU|C Chain C, E. Coli Uridine Phosphorylase: Thymidine Phosphate
Complex
pdb|1RXU|D Chain D, E. Coli Uridine Phosphorylase: Thymidine Phosphate
Complex
pdb|1RXU|E Chain E, E. Coli Uridine Phosphorylase: Thymidine Phosphate
Complex
pdb|1RXU|F Chain F, E. Coli Uridine Phosphorylase: Thymidine Phosphate
Complex
pdb|1RXU|G Chain G, E. Coli Uridine Phosphorylase: Thymidine Phosphate
Complex
pdb|1RXU|H Chain H, E. Coli Uridine Phosphorylase: Thymidine Phosphate
Complex
pdb|1RXU|I Chain I, E. Coli Uridine Phosphorylase: Thymidine Phosphate
Complex
pdb|1RXU|J Chain J, E. Coli Uridine Phosphorylase: Thymidine Phosphate
Complex
pdb|1RXU|K Chain K, E. Coli Uridine Phosphorylase: Thymidine Phosphate
Complex
pdb|1RXU|L Chain L, E. Coli Uridine Phosphorylase: Thymidine Phosphate
Complex
pdb|1RXU|M Chain M, E. Coli Uridine Phosphorylase: Thymidine Phosphate
Complex
pdb|1RXU|N Chain N, E. Coli Uridine Phosphorylase: Thymidine Phosphate
Complex
pdb|1RXU|O Chain O, E. Coli Uridine Phosphorylase: Thymidine Phosphate
Complex
pdb|1RXU|P Chain P, E. Coli Uridine Phosphorylase: Thymidine Phosphate
Complex
pdb|1RXU|Q Chain Q, E. Coli Uridine Phosphorylase: Thymidine Phosphate
Complex
pdb|1RXU|R Chain R, E. Coli Uridine Phosphorylase: Thymidine Phosphate
Complex
pdb|1RXY|A Chain A, E. Coli Uridine Phosphorylase: Type-B Native
pdb|1RXY|B Chain B, E. Coli Uridine Phosphorylase: Type-B Native
pdb|1T0U|A Chain A, Crystal Structure Of E.coli Uridine Phosphorylase At 2.2
A Resolution (type-a Native)
pdb|1T0U|B Chain B, Crystal Structure Of E.coli Uridine Phosphorylase At 2.2
A Resolution (type-a Native)
pdb|3KVV|A Chain A, Trapping Of An Oxocarbenium Ion Intermediate In Up
Crystals
pdb|3KVV|B Chain B, Trapping Of An Oxocarbenium Ion Intermediate In Up
Crystals
pdb|3KVV|C Chain C, Trapping Of An Oxocarbenium Ion Intermediate In Up
Crystals
pdb|3KVV|D Chain D, Trapping Of An Oxocarbenium Ion Intermediate In Up
Crystals
pdb|3KVV|E Chain E, Trapping Of An Oxocarbenium Ion Intermediate In Up
Crystals
pdb|3KVV|F Chain F, Trapping Of An Oxocarbenium Ion Intermediate In Up
Crystals
Length = 253
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 18 DPDRVEAVSKLMSGDVDEANLKTYLATSSEEEGK 51
DPDRVE ++ LM V A+ + + +E +GK
Sbjct: 27 DPDRVEKIAALMDKPVKLASHREFTTWRAELDGK 60
>pdb|1TGV|A Chain A, Structure Of E. Coli Uridine Phosphorylase Complexed
With 5- Fluorouridine And Sulfate
pdb|1TGV|B Chain B, Structure Of E. Coli Uridine Phosphorylase Complexed
With 5- Fluorouridine And Sulfate
pdb|1TGY|A Chain A, Structure Of E. Coli Uridine Phosphorylase Complexed
With Uracil And Ribose 1-Phosphate
pdb|1TGY|B Chain B, Structure Of E. Coli Uridine Phosphorylase Complexed
With Uracil And Ribose 1-Phosphate
pdb|1U1C|A Chain A, Structure Of E. Coli Uridine Phosphorylase Complexed To
5- Benzylacyclouridine (Bau)
pdb|1U1C|B Chain B, Structure Of E. Coli Uridine Phosphorylase Complexed To
5- Benzylacyclouridine (Bau)
pdb|1U1C|C Chain C, Structure Of E. Coli Uridine Phosphorylase Complexed To
5- Benzylacyclouridine (Bau)
pdb|1U1C|D Chain D, Structure Of E. Coli Uridine Phosphorylase Complexed To
5- Benzylacyclouridine (Bau)
pdb|1U1C|E Chain E, Structure Of E. Coli Uridine Phosphorylase Complexed To
5- Benzylacyclouridine (Bau)
pdb|1U1C|F Chain F, Structure Of E. Coli Uridine Phosphorylase Complexed To
5- Benzylacyclouridine (Bau)
pdb|1U1D|A Chain A, Structure Of E. Coli Uridine Phosphorylase Complexed To
5- (Phenylthio)acyclouridine (Ptau)
pdb|1U1D|B Chain B, Structure Of E. Coli Uridine Phosphorylase Complexed To
5- (Phenylthio)acyclouridine (Ptau)
pdb|1U1D|C Chain C, Structure Of E. Coli Uridine Phosphorylase Complexed To
5- (Phenylthio)acyclouridine (Ptau)
pdb|1U1D|D Chain D, Structure Of E. Coli Uridine Phosphorylase Complexed To
5- (Phenylthio)acyclouridine (Ptau)
pdb|1U1D|E Chain E, Structure Of E. Coli Uridine Phosphorylase Complexed To
5- (Phenylthio)acyclouridine (Ptau)
pdb|1U1D|F Chain F, Structure Of E. Coli Uridine Phosphorylase Complexed To
5- (Phenylthio)acyclouridine (Ptau)
pdb|1U1E|A Chain A, Structure Of E. Coli Uridine Phosphorylase Complexed To
5(Phenylseleno)acyclouridine (Psau)
pdb|1U1E|B Chain B, Structure Of E. Coli Uridine Phosphorylase Complexed To
5(Phenylseleno)acyclouridine (Psau)
pdb|1U1E|C Chain C, Structure Of E. Coli Uridine Phosphorylase Complexed To
5(Phenylseleno)acyclouridine (Psau)
pdb|1U1E|D Chain D, Structure Of E. Coli Uridine Phosphorylase Complexed To
5(Phenylseleno)acyclouridine (Psau)
pdb|1U1E|E Chain E, Structure Of E. Coli Uridine Phosphorylase Complexed To
5(Phenylseleno)acyclouridine (Psau)
pdb|1U1E|F Chain F, Structure Of E. Coli Uridine Phosphorylase Complexed To
5(Phenylseleno)acyclouridine (Psau)
pdb|1U1F|A Chain A, Structure Of E. Coli Uridine Phosphorylase Complexed To
5-(M- (Benzyloxy)benzyl)acyclouridine (Bbau)
pdb|1U1F|B Chain B, Structure Of E. Coli Uridine Phosphorylase Complexed To
5-(M- (Benzyloxy)benzyl)acyclouridine (Bbau)
pdb|1U1F|C Chain C, Structure Of E. Coli Uridine Phosphorylase Complexed To
5-(M- (Benzyloxy)benzyl)acyclouridine (Bbau)
pdb|1U1F|D Chain D, Structure Of E. Coli Uridine Phosphorylase Complexed To
5-(M- (Benzyloxy)benzyl)acyclouridine (Bbau)
pdb|1U1F|E Chain E, Structure Of E. Coli Uridine Phosphorylase Complexed To
5-(M- (Benzyloxy)benzyl)acyclouridine (Bbau)
pdb|1U1F|F Chain F, Structure Of E. Coli Uridine Phosphorylase Complexed To
5-(M- (Benzyloxy)benzyl)acyclouridine (Bbau)
pdb|1U1G|A Chain A, Structure Of E. Coli Uridine Phosphorylase Complexed To
5-(M- (Benzyloxy)benzyl)barbituric Acid (Bbba)
pdb|1U1G|B Chain B, Structure Of E. Coli Uridine Phosphorylase Complexed To
5-(M- (Benzyloxy)benzyl)barbituric Acid (Bbba)
pdb|1U1G|C Chain C, Structure Of E. Coli Uridine Phosphorylase Complexed To
5-(M- (Benzyloxy)benzyl)barbituric Acid (Bbba)
pdb|1U1G|D Chain D, Structure Of E. Coli Uridine Phosphorylase Complexed To
5-(M- (Benzyloxy)benzyl)barbituric Acid (Bbba)
pdb|1U1G|E Chain E, Structure Of E. Coli Uridine Phosphorylase Complexed To
5-(M- (Benzyloxy)benzyl)barbituric Acid (Bbba)
pdb|1U1G|F Chain F, Structure Of E. Coli Uridine Phosphorylase Complexed To
5-(M- (Benzyloxy)benzyl)barbituric Acid (Bbba)
Length = 256
Score = 25.8 bits (55), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 18 DPDRVEAVSKLMSGDVDEANLKTYLATSSEEEGK 51
DPDRVE ++ LM V A+ + + +E +GK
Sbjct: 30 DPDRVEKIAALMDKPVKLASHREFTTWRAELDGK 63
>pdb|2VX7|A Chain A, Cellvibrio Japonicus Mannanase Cjman26c Mannobiose-Bound
Form
Length = 396
Score = 25.8 bits (55), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 28/144 (19%)
Query: 10 VNLTWDETDP-------DRVEAVSKLMSGDVDEANLKTYLAT---------SSEEEGKRD 53
+ ++W +P D+ AV +L+ G A LK YL T + +G +
Sbjct: 128 ITISWHVFNPVSGGNSWDKTPAVHELIPGGARHATLKAYLDTFVAFNEGLADVDAQGNKH 187
Query: 54 F---LFYLREKLNDNI--WADGFNIDPELIRDYFYRFLYQPQDREYPDL--CQLPDLNET 106
+ +F + N + W G + + I + + Y +++ +L PD +
Sbjct: 188 YPPIIFRPWHEHNGDWFWWGKGHASEQDYIALWRFTVHYLRDEKKLRNLIYAYSPDRSRI 247
Query: 107 TLLENLRARFNAGHIYTYVGSILI 130
+ A F AG++Y Y G +
Sbjct: 248 DM-----ANFEAGYLYGYPGDAYV 266
>pdb|2VX5|A Chain A, Cellvibrio Japonicus Mannanase Cjman26c Mannose-Bound Form
Length = 396
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 28/144 (19%)
Query: 10 VNLTWDETDP-------DRVEAVSKLMSGDVDEANLKTYLAT---------SSEEEGKRD 53
+ ++W +P D+ AV +L+ G A LK YL T + +G +
Sbjct: 128 ITISWHVFNPVSGGNSWDKTPAVHELIPGGARHATLKAYLDTFVAFNEGLADVDAQGNKH 187
Query: 54 F---LFYLREKLNDNI--WADGFNIDPELIRDYFYRFLYQPQDREYPDLCQL--PDLNET 106
+ +F + N + W G + + I + + Y +++ +L PD +
Sbjct: 188 YPPIIFRPWHEHNGDWFWWGKGHASEQDYIALWRFTVHYLRDEKKLRNLIYAYSPDRSRI 247
Query: 107 TLLENLRARFNAGHIYTYVGSILI 130
+ A F AG++Y Y G +
Sbjct: 248 DM-----ANFEAGYLYGYPGDAYV 266
>pdb|2VX4|A Chain A, Cellvibrio Japonicus Mannanase Cjman26c Native Form
pdb|2VX6|A Chain A, Cellvibrio Japonicus Mannanase Cjman26c Gal1man4-Bound
Form
Length = 396
Score = 25.8 bits (55), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 30/144 (20%), Positives = 57/144 (39%), Gaps = 28/144 (19%)
Query: 10 VNLTWDETDP-------DRVEAVSKLMSGDVDEANLKTYLAT---------SSEEEGKRD 53
+ ++W +P D+ AV +L+ G A LK YL T + +G +
Sbjct: 128 ITISWHVFNPVSGGNSWDKTPAVHELIPGGARHATLKAYLDTFVAFNEGLADVDAQGNKH 187
Query: 54 F---LFYLREKLNDNI--WADGFNIDPELIRDYFYRFLYQPQDREYPDLCQL--PDLNET 106
+ +F + N + W G + + I + + Y +++ +L PD +
Sbjct: 188 YPPIIFRPWHEHNGDWFWWGKGHASEQDYIALWRFTVHYLRDEKKLRNLIYAYSPDRSRI 247
Query: 107 TLLENLRARFNAGHIYTYVGSILI 130
+ A F AG++Y Y G +
Sbjct: 248 DM-----ANFEAGYLYGYPGDAYV 266
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,452,099
Number of Sequences: 62578
Number of extensions: 181618
Number of successful extensions: 452
Number of sequences better than 100.0: 80
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 376
Number of HSP's gapped (non-prelim): 80
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)