RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4957
(143 letters)
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane,
vanadate, transport, PRE- powerstroke, transition state,
protein transport; HET: ADP; 1.75A {Sus scrofa} PDB:
2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Length = 784
Score = 77.3 bits (191), Expect = 1e-17
Identities = 23/41 (56%), Positives = 29/41 (70%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D C L LNE TLL N++ R++ IYTYV +ILIAVNP+
Sbjct: 57 DNCSLMYLNEATLLHNIKVRYSKDRIYTYVANILIAVNPYF 97
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter
domain, contractIle protein; HET: ADP; 3.00A
{Dictyostelium discoideum} SCOP: c.37.1.9
Length = 697
Score = 70.3 bits (173), Expect = 3e-15
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D L + E +ENL R + +IYTY+G ++I+ NPFK
Sbjct: 12 DFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFK 52
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 67.8 bits (166), Expect = 2e-14
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 96 DLCQLPDLNETTLLENLRARF-NAGHIYTYVGSILIAVNPFK 136
DL L L+E +L NL+ RF ++ IYTY G +L+A+NP++
Sbjct: 73 DLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYE 114
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken,
molecular motor, ATPase, ELC, IQ motif, muscle protein,
ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1
c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Length = 795
Score = 66.9 bits (164), Expect = 5e-14
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 96 DLCQLPDLNETTLLENLRARF-NAGHIYTYVGSILIAVNPFK 136
DL L L+E +L NL+ RF ++ IYTY G +L+A+NP++
Sbjct: 73 DLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYE 114
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM,
protein engineering, structural protein; HET: ADP; 2.80A
{Dictyostelium discoideum} SCOP: k.1.1.1
Length = 1010
Score = 64.3 bits (157), Expect = 4e-13
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 90 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A
{Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Length = 995
Score = 62.8 bits (153), Expect = 1e-12
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE ++L NLR R+ +G IYTY G + +NP+K
Sbjct: 64 DMAELTCLNEASVLHNLRERYYSGLIYTYSGLFCVVINPYK 104
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain,
mutant, muscle contraction; HET: ADP; 1.75A
{Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A*
1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A*
1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A*
1jx2_A* 3mjx_A* 2jhr_A* ...
Length = 770
Score = 62.6 bits (153), Expect = 2e-12
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 90 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 130
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 61.0 bits (148), Expect = 5e-12
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 95 PDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFKLF 138
D+ +L LNE ++L NLR R+ +G IYTY G + +NP+K
Sbjct: 86 EDMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYKQL 129
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta,
contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB:
2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A*
1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A*
1o1g_A*
Length = 783
Score = 60.7 bits (148), Expect = 6e-12
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ L L+E +L NL+ R+ + IYTY G + VNP+K
Sbjct: 89 DMAMLTFLHEPAVLYNLKDRYGSWMIYTYSGLFCVTVNPYK 129
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle PROT; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A*
2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Length = 837
Score = 58.1 bits (141), Expect = 5e-11
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ + LNE ++L NLR+R+ +G IYTY G IAVNP++
Sbjct: 87 DMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYR 127
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 39.8 bits (92), Expect = 1e-04
Identities = 24/164 (14%), Positives = 54/164 (32%), Gaps = 51/164 (31%)
Query: 13 TWDETDPDRVEAVSKLMSGDVDEANLKTYLATSSEEEGKRDF--LFYLREKLNDNI---- 66
TWD + ++ ++ ++ L+ E ++ F L + +I
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLN--VLE-------PAEYRKMFDRLSVFPP--SAHIPTIL 391
Query: 67 ----WADGFNIDPELIRDYFYRF-LYQPQDREYPDLCQLPDL---------NETTLLENL 112
W D D ++ + +++ L + Q +E +P + NE L ++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES--TISIPSIYLELKVKLENEYALHRSI 449
Query: 113 RARFNA---------------GHIYTYVGSILIAVNP---FKLF 138
+N + Y+++G L + LF
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Score = 36.4 bits (83), Expect = 0.002
Identities = 25/148 (16%), Positives = 52/148 (35%), Gaps = 25/148 (16%)
Query: 14 WDETDPDRVEAV------SKLMSGDVDEANLKTYLATSSEEEGKRDFLFYLREKLND--N 65
W + V V L+ E + + + E + K + + L + D N
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKE-STISIPSIYLELKVKLENEYALHRSIVDHYN 454
Query: 66 IWA--DGFNIDPELIRDYFYRFL-Y-----QPQDR--EYPDLCQLPDLNETTLLEN-LRA 114
I D ++ P + YFY + + + +R + + D LE +R
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV--FLDFR---FLEQKIRH 509
Query: 115 RFNAGHIYTYVGSILIAVNPFKLFFCED 142
A + + + L + +K + C++
Sbjct: 510 DSTAWNASGSILNTLQQLKFYKPYICDN 537
Score = 30.2 bits (67), Expect = 0.23
Identities = 21/109 (19%), Positives = 30/109 (27%), Gaps = 17/109 (15%)
Query: 5 LQQVKVNLTWDETDPDRVEAVSKLMSGDVD----EANLKTYLATSSEEEGKRD------- 53
L + LT DE + K + E S E RD
Sbjct: 291 LDHHSMTLTPDEV----KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 54 FLFYLREKLNDNIWADGFNIDPELIRDYFYRFLYQPQDREYPD--LCQL 100
+ +KL I + ++P R F R P P L +
Sbjct: 347 WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Score = 28.7 bits (63), Expect = 0.69
Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 13/88 (14%)
Query: 44 TSSEEEGKRDFLFYLREKLNDNIWADGFNIDPELIRDYFYRFLYQPQDREYPDLCQLPDL 103
T + +D L + DN D + ++D L E + D
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNF-------DCKDVQDMPKSIL---SKEEIDHIIMSKDA 60
Query: 104 NETT--LLENLRARFNAGHIYTYVGSIL 129
T L L ++ + +V +L
Sbjct: 61 VSGTLRLFWTLLSK-QEEMVQKFVEEVL 87
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.15
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 6/24 (25%)
Query: 23 EAVSKLMSGDVDEANLKTYLATSS 46
+A+ KL +A+LK Y S+
Sbjct: 20 QALKKL------QASLKLYADDSA 37
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 29.6 bits (66), Expect = 0.35
Identities = 10/48 (20%), Positives = 21/48 (43%), Gaps = 8/48 (16%)
Query: 78 IRDYFYRFLYQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYTYV 125
+++ F + L +P + D +E T L +F G++ + V
Sbjct: 33 LQEQFNKILPEPTEGFAAD-------DEPTTPAELVGKF-LGYVSSLV 72
>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase
family 29; 1.73A {Bacteroides thetaiotaomicron} PDB:
2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*
Length = 450
Score = 26.3 bits (58), Expect = 5.0
Identities = 5/34 (14%), Positives = 9/34 (26%)
Query: 64 DNIWADGFNIDPELIRDYFYRFLYQPQDREYPDL 97
+ W DG ++ Q P +
Sbjct: 190 KDFWFDGTWDASVKKNGWWTAHAEQMLKELVPGV 223
>1cyg_A Cyclodextrin glucanotransferase; glycosyltransferase; 2.50A
{Geobacillus stearothermophilus} SCOP: b.1.18.2 b.3.1.1
b.71.1.1 c.1.8.1
Length = 680
Score = 25.9 bits (57), Expect = 6.8
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 1/46 (2%)
Query: 60 EKLNDNIWADGFNIDPELIRDYFYRFLYQPQ-DREYPDLCQLPDLN 104
++ G+ D + + + D Y +L L DLN
Sbjct: 152 RLYDNGTLLGGYTNDANMYFHHNGGTTFSSLEDGIYRNLFDLADLN 197
>3p0f_A Uridine phosphorylase 2; transferase; HET: BAU; 1.54A {Homo
sapiens} PDB: 3p0e_A* 2xrf_A
Length = 297
Score = 25.5 bits (55), Expect = 7.9
Identities = 4/27 (14%), Positives = 12/27 (44%)
Query: 18 DPDRVEAVSKLMSGDVDEANLKTYLAT 44
P+R++A + M ++ + +
Sbjct: 50 SPNRMKAFALFMHKELGFEEAEEDIKD 76
>1of5_B MTR2, YKL186C, mRNA transport regulator MTR2; nuclear protein,
repeat, leucine- rich repeat, nuclear transport; 2.8A
{Saccharomyces cerevisiae} SCOP: d.17.4.2
Length = 184
Score = 25.1 bits (54), Expect = 9.9
Identities = 11/38 (28%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 54 FLFYLREKLNDNIWADGFNIDPELIRDYFYRFLYQPQD 91
F L+ ++D I+ + FN +I + Y +Y+P+D
Sbjct: 145 FGISLQLIIDDRIFRNDFN---GVISGFNYNMVYKPED 179
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.139 0.418
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,315,565
Number of extensions: 132430
Number of successful extensions: 429
Number of sequences better than 10.0: 1
Number of HSP's gapped: 427
Number of HSP's successfully gapped: 45
Length of query: 143
Length of database: 6,701,793
Length adjustment: 84
Effective length of query: 59
Effective length of database: 4,356,429
Effective search space: 257029311
Effective search space used: 257029311
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (23.8 bits)