RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy4957
(143 letters)
>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
scallop (Aequipecten irradians) [TaxId: 31199]}
Length = 789
Score = 76.7 bits (188), Expect = 7e-18
Identities = 20/41 (48%), Positives = 29/41 (70%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ + LNE ++L NLR+R+ +G IYTY G IAVNP++
Sbjct: 39 DMANMTYLNEASVLYNLRSRYTSGLIYTYSGLFCIAVNPYR 79
>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 710
Score = 76.7 bits (188), Expect = 7e-18
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE ++L NLR R+ +G IYTY G + +NP+K
Sbjct: 9 DMAELTCLNEASVLHNLRERYFSGLIYTYSGLFCVVINPYK 49
>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
(Gallus gallus), pectoral muscle [TaxId: 9031]}
Length = 794
Score = 76.3 bits (187), Expect = 9e-18
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ + L+E +L NL+ R+ A IYTY G + VNP+K
Sbjct: 41 DMAMMTHLHEPAVLYNLKERYAAWMIYTYSGLFCVTVNPYK 81
>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
discoideum, class-I myosin MyoE [TaxId: 44689]}
Length = 684
Score = 76.3 bits (187), Expect = 1e-17
Identities = 18/42 (42%), Positives = 26/42 (61%)
Query: 95 PDLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
PD L + E +ENL R + +IYTY+G ++I+ NPFK
Sbjct: 3 PDFVLLNQITENAFIENLTMRHKSDNIYTYIGDVVISTNPFK 44
>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
{Dictyostelium discoideum [TaxId: 44689]}
Length = 712
Score = 75.9 bits (186), Expect = 1e-17
Identities = 22/41 (53%), Positives = 27/41 (65%)
Query: 96 DLCQLPDLNETTLLENLRARFNAGHIYTYVGSILIAVNPFK 136
D+ +L LNE + NLR R+N IYTY G L+AVNPFK
Sbjct: 43 DMSELSYLNEPAVFHNLRVRYNQDLIYTYSGLFLVAVNPFK 83
>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
(Gallus gallus), Va isoform [TaxId: 9031]}
Length = 730
Score = 71.3 bits (174), Expect = 5e-16
Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 96 DLCQLPDLNETTLLENLRARF-NAGHIYTYVGSILIAVNPFK 136
DL L L+E +L NL+ RF ++ IYTY G +L+A+NP++
Sbjct: 11 DLTALSYLHEPAVLHNLKVRFIDSKLIYTYCGIVLVAINPYE 52
>d1knxa1 c.98.2.1 (A:1-132) HPr kinase/phoshatase HprK N-terminal
domain {Mycoplasma pneumoniae [TaxId: 2104]}
Length = 132
Score = 24.7 bits (54), Expect = 3.9
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 40 TYLATSSEEEGKRDFLFYLREKLNDNIWADGFNIDPELI 78
+L+ + E ++ L+ I F L+
Sbjct: 62 GFLSQKTLVEQQQILHNLLKLNPPAIILTKSFTDPTVLL 100
>d1o7ja_ c.88.1.1 (A:) Asparaginase type II {Erwinia chrysanthemi
[TaxId: 556]}
Length = 325
Score = 24.7 bits (53), Expect = 5.3
Identities = 6/19 (31%), Positives = 12/19 (63%)
Query: 67 WADGFNIDPELIRDYFYRF 85
A DP++I++YF+ +
Sbjct: 307 LALTRTSDPKVIQEYFHTY 325
>d1vr5a1 c.94.1.1 (A:23-557) Oligo-peptide binding protein (OPPA)
{Thermotoga maritima [TaxId: 2336]}
Length = 535
Score = 24.7 bits (52), Expect = 5.3
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 28 LMSGDVDEANLKTYLATSSEEEGKRDFLFYLREKLNDNIWADG 70
L D + +LA E +++ LR+ L W DG
Sbjct: 39 LFLYDPLNDKFEPWLAEKGEWVSNNEYVLTLRKGLR---WQDG 78
>d1wova1 a.132.1.1 (A:2-250) Heme oxygenase 2 {Synechocystis sp. pcc
6803 [TaxId: 1148]}
Length = 249
Score = 24.6 bits (53), Expect = 5.5
Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 12/128 (9%)
Query: 12 LTWDE-TDPDRVEAVSKLMSGDVDEANLKTYLAT------SSEEEGKRDFLFYLREKLND 64
T T + + + G V+ + LA + E ++ + ++
Sbjct: 10 GTQQSHTLAENTAYMKCFLKGIVEREPFRQLLANLYYLYSALEAALRQ----HRDNEIIS 65
Query: 65 NIWADGFNIDPELIRDYFYRFLYQPQDREYPDLCQLPDLNETTLLENLRARFNAGHIYT- 123
I+ N +L D Y + Q P C ++ + H YT
Sbjct: 66 AIYFPELNRTDKLAEDLTYYYGPNWQQIIQPTPCAKIYVDRLKTIAASEPELLIAHCYTR 125
Query: 124 YVGSILIA 131
Y+G +
Sbjct: 126 YLGDLSGG 133
>d1whua_ a.4.9.1 (A:) Polynucleotide phosphorylase/guanosine
pentaphosphate synthase (PNPase/GPSI), domain 3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 104
Score = 23.6 bits (51), Expect = 6.2
Identities = 7/67 (10%), Positives = 19/67 (28%), Gaps = 6/67 (8%)
Query: 18 DPDRVEAVSKLMSGDVDEANLKTYLATSSEEEGKRDFLFY-LREKLNDNIWADGFNIDPE 76
+ V+ + + ++ RD +R +++ +D
Sbjct: 15 SAEIVKYTKIIAMEKLYAV-----FTDYEHDKVSRDEAVNKIRLDTEEHLKEKFPEVDQF 69
Query: 77 LIRDYFY 83
I + F
Sbjct: 70 EIIESFN 76
>d4pgaa_ c.88.1.1 (A:) Glutaminase-asparaginase {Pseudomonas sp., 7A
[TaxId: 306]}
Length = 330
Score = 24.3 bits (52), Expect = 7.6
Identities = 3/19 (15%), Positives = 8/19 (42%)
Query: 67 WADGFNIDPELIRDYFYRF 85
A D + ++ F+ +
Sbjct: 312 VAMTKTQDSKELQRIFWEY 330
>d1jeta_ c.94.1.1 (A:) Oligo-peptide binding protein (OPPA)
{Salmonella typhimurium [TaxId: 90371]}
Length = 517
Score = 24.2 bits (51), Expect = 8.8
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 3/66 (4%)
Query: 34 DEANLKTYLATSSEEEGKRDFLFYLREKLNDNIWADGFNIDPELIRDYFYRFLYQPQDRE 93
E + +A E + + + F+LRE W+DG + + R
Sbjct: 52 VEGHPSPGVAEKWENKDFKVWTFHLRENAK---WSDGTPVTAHDFVYSWQRLADPNTASP 108
Query: 94 YPDLCQ 99
Y Q
Sbjct: 109 YASYLQ 114
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 23.7 bits (51), Expect = 10.0
Identities = 12/28 (42%), Positives = 14/28 (50%)
Query: 99 QLPDLNETTLLENLRARFNAGHIYTYVG 126
QL D+ E+T L L AG I VG
Sbjct: 5 QLQDVAESTRLGPLSGEVRAGEILHLVG 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.139 0.418
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 571,535
Number of extensions: 26762
Number of successful extensions: 102
Number of sequences better than 10.0: 1
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 25
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.8 bits)