BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4958
(65 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P35992|PTP10_DROME Tyrosine-protein phosphatase 10D OS=Drosophila melanogaster
GN=Ptp10D PE=1 SV=3
Length = 1631
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 45/59 (76%), Positives = 51/59 (86%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKGFSPF 65
GRAYNISVQT+SEDEIS PTTAQYRT+PLRPL+ T+D+ ITSNS RV+WE PKG S F
Sbjct: 285 GRAYNISVQTMSEDEISLPTTAQYRTVPLRPLNVTFDRDFITSNSFRVLWEAPKGISEF 343
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKG 61
GR YNI+V TVS S P Q R P P++ + +IT + + W+ PKG
Sbjct: 837 GRLYNITVWTVSGGVASLPIQRQDRLYP-EPITQLH-ATNITDTEISLRWDLPKG 889
>sp|Q5ZQU0|SNED1_RAT Sushi, nidogen and EGF-like domain-containing protein 1 OS=Rattus
norvegicus GN=Sned1 PE=2 SV=2
Length = 1403
Score = 35.0 bits (79), Expect = 0.14, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 7/58 (12%)
Query: 4 IGTGRAYNISVQTV-----SEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVW 56
+ GRAYNISV +V ++++IS P RT P RP+ ++ +I++N++ V W
Sbjct: 970 LAAGRAYNISVFSVKRNTNNKNDISRPAALLTRTRP-RPIE-DFEVTNISANAISVQW 1025
>sp|Q70E20|SNED1_MOUSE Sushi, nidogen and EGF-like domain-containing protein 1 OS=Mus
musculus GN=Sned1 PE=2 SV=2
Length = 1403
Score = 35.0 bits (79), Expect = 0.15, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 7/58 (12%)
Query: 4 IGTGRAYNISVQTV-----SEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVW 56
+ GRAYNISV +V ++++IS P RT P RP+ ++ +I++N++ V W
Sbjct: 970 LAAGRAYNISVFSVKRNTNNKNDISRPAALLTRTRP-RPIE-DFEVTNISANAISVQW 1025
>sp|Q80X19|COEA1_MOUSE Collagen alpha-1(XIV) chain OS=Mus musculus GN=Col14a1 PE=2 SV=2
Length = 1797
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 1/52 (1%)
Query: 10 YNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKG 61
Y ++V + +E S P T Q T+PL P +++ SNS R+ W+P G
Sbjct: 511 YTVTVYAMFGEEASDPATGQETTLPLTP-PRNLRISNVGSNSARLTWDPASG 561
>sp|Q8TER0|SNED1_HUMAN Sushi, nidogen and EGF-like domain-containing protein 1 OS=Homo
sapiens GN=SNED1 PE=2 SV=2
Length = 1413
Score = 33.9 bits (76), Expect = 0.33, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 7/58 (12%)
Query: 4 IGTGRAYNISVQTV-----SEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVW 56
+ GRAYNISV +V ++++IS P RT P RP+ ++ ++T++++ V W
Sbjct: 970 LAAGRAYNISVFSVKRNSNNKNDISRPAVLLARTRP-RPVE-GFEVTNVTASTISVQW 1025
>sp|Q28902|COCA1_RABIT Collagen alpha-1(XII) chain (Fragment) OS=Oryctolagus cuniculus
GN=COL12A1 PE=2 SV=1
Length = 639
Score = 32.3 bits (72), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 10 YNISVQTVSEDEISTPTTAQYRTIPL-RPLSFTYDKASITSNSLRVVWEPPKG 61
Y ++VQ V D S P TA+ T+PL RP +T +++ V WEP G
Sbjct: 284 YEVTVQAVLHDLTSEPATAREMTLPLPRPQDVKL--RDVTHSTMSVFWEPVLG 334
Score = 30.0 bits (66), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 10 YNISVQTVSEDEISTPTTAQYRTIPLRPLSFT-YDKASITSNSLRVVWEPPKGFSPF 65
Y ++V +V EDE S P +T+P+ +S YD I ++RV W+P G + +
Sbjct: 193 YVVNVYSVVEDEYSEPLKGTEKTLPVPIVSLNIYD---IGPTTMRVQWQPVGGATGY 246
>sp|A3GFA2|SEC23_PICST Protein transport protein SEC23 OS=Scheffersomyces stipitis (strain
ATCC 58785 / CBS 6054 / NBRC 10063 / NRRL Y-11545)
GN=SEC23 PE=3 SV=2
Length = 749
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 3 IIGTGRAYNISVQTVSEDEISTPTTAQYRTIPLRP 37
+IG + N+ Q VSE+E+ T+QYR + P
Sbjct: 409 LIGHASSMNVKTQNVSENELGIGGTSQYRLCSVSP 443
>sp|Q00546|TENR_CHICK Tenascin-R OS=Gallus gallus GN=TNR PE=1 SV=1
Length = 1353
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEP 58
G AYN+S+ V D +S+P T + T P + +IT ++ V WEP
Sbjct: 387 GVAYNVSIYAVISDVLSSPVTTKVTTNLATPQGLKF--KTITETTVEVQWEP 436
>sp|P32018|COEA1_CHICK Collagen alpha-1(XIV) chain OS=Gallus gallus GN=COL14A1 PE=1 SV=2
Length = 1888
Score = 31.2 bits (69), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 10 YNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEP 58
Y ++V + +E S P T Q T+PL P S + + NS ++ W+P
Sbjct: 510 YTVTVYAMFGEEASDPLTGQETTLPLSPPS-NLKFSDVGHNSAKLTWDP 557
>sp|Q99715|COCA1_HUMAN Collagen alpha-1(XII) chain OS=Homo sapiens GN=COL12A1 PE=1 SV=2
Length = 3063
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 10 YNISVQTVSEDEISTPTTAQYRTIPL-RPLSFTYDKASITSNSLRVVWEPPKG 61
Y ++VQ V D S P T + T+PL RP +T +++ V WEP G
Sbjct: 1541 YAVTVQAVLHDLTSEPVTVREVTLPLPRPQDLKL--RDVTHSTMNVFWEPVPG 1591
>sp|P13944|COCA1_CHICK Collagen alpha-1(XII) chain OS=Gallus gallus GN=COL12A1 PE=1 SV=3
Length = 3124
Score = 31.2 bits (69), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 10 YNISVQTVSEDEISTPTTAQYRTIPL---RPLSFTYDKASITSNSLRVVWEPPKGFSPF 65
Y ++V +V EDE S P + T PL R L+ YD I S S+RV WEP G + +
Sbjct: 1450 YIVNVFSVVEDESSEPLIGREITYPLSSVRNLNV-YD---IGSTSMRVRWEPVNGATGY 1504
>sp|P02751|FINC_HUMAN Fibronectin OS=Homo sapiens GN=FN1 PE=1 SV=4
Length = 2386
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPP 59
G YN+SV TV +D+ S P + IP P +I +++RV W PP
Sbjct: 1240 GLEYNVSVYTVKDDKESVPISDT--IIPAVPPPTDLRFTNIGPDTMRVTWAPP 1290
>sp|P10039|TENA_CHICK Tenascin OS=Gallus gallus GN=TNC PE=1 SV=2
Length = 1808
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPK 60
G Y I + VS S P + T+ P ++ + IT NS V W PP+
Sbjct: 1290 GTEYEIELYGVSSGRRSQPINSVATTVVGSPKGISF--SDITENSATVSWTPPR 1341
>sp|P11276|FINC_MOUSE Fibronectin OS=Mus musculus GN=Fn1 PE=1 SV=4
Length = 2477
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPK 60
G Y +SV +V E S P + +T P F D + IT+NS V W P+
Sbjct: 1421 GTEYLVSVSSVYEQHESIPLRGRQKTGLDSPTGF--DSSDITANSFTVHWVAPR 1472
>sp|Q8BYI9|TENR_MOUSE Tenascin-R OS=Mus musculus GN=Tnr PE=1 SV=2
Length = 1358
Score = 29.6 bits (65), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEP 58
G YNISV V + +S P TA+ T P + +IT ++ V WEP
Sbjct: 388 GLTYNISVYAVISNILSLPITAKVATHLSTPQGLQF--KTITETTVEVQWEP 437
>sp|Q05707|COEA1_HUMAN Collagen alpha-1(XIV) chain OS=Homo sapiens GN=COL14A1 PE=1 SV=3
Length = 1796
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 10 YNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEP 58
Y ++V + +E S P T Q T+ L P +++ SNS R+ W+P
Sbjct: 510 YTVTVYAMFGEEASDPVTGQETTLALSP-PRNLRISNVGSNSARLTWDP 557
>sp|Q05546|TENR_RAT Tenascin-R OS=Rattus norvegicus GN=Tnr PE=1 SV=1
Length = 1356
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEP 58
G YNISV V + +S P TA+ T P + +IT ++ V WEP
Sbjct: 387 GLTYNISVYAVISNILSLPITAKVATHLSTPQGLQF--KTITETTVEVQWEP 436
>sp|Q92752|TENR_HUMAN Tenascin-R OS=Homo sapiens GN=TNR PE=1 SV=3
Length = 1358
Score = 29.3 bits (64), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEP 58
G YNISV V + +S P TA+ T P + +IT ++ V WEP
Sbjct: 388 GLTYNISVYAVISNILSLPITAKVATHLSTPQGLQF--KTITETTVEVQWEP 437
>sp|P04937|FINC_RAT Fibronectin OS=Rattus norvegicus GN=Fn1 PE=1 SV=2
Length = 2477
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPK 60
G Y +SV +V E S P + +T P F D + +T+NS V W P+
Sbjct: 1421 GTEYLVSVSSVYEQHESIPLRGRQKTGLDSPTGF--DSSDVTANSFTVHWVAPR 1472
>sp|Q5ZJP5|FND3A_CHICK Fibronectin type-III domain-containing protein 3a OS=Gallus gallus
GN=FNDC3A PE=2 SV=2
Length = 1198
Score = 28.9 bits (63), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 9 AYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYD--KASITSNSLRVVWEPPK 60
AYN SE + S T Y T P +P + + K I + S +++W+PPK
Sbjct: 543 AYN------SEGKSSPSETVDYTTCPDKPGAPSKPSVKGKIHAQSFKIIWDPPK 590
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.132 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,408,698
Number of Sequences: 539616
Number of extensions: 712396
Number of successful extensions: 1799
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 1740
Number of HSP's gapped (non-prelim): 91
length of query: 65
length of database: 191,569,459
effective HSP length: 37
effective length of query: 28
effective length of database: 171,603,667
effective search space: 4804902676
effective search space used: 4804902676
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)