RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy4958
         (65 letters)



>gnl|CDD|162372 TIGR01458, HAD-SF-IIA-hyp3, HAD-superfamily subfamily IIA
           hydrolase, TIGR01458.  This hypothetical equivalog is a
           member of the IIA subfamily (TIGR01460) of the haloacid
           dehalogenase superfamily of aspartate-nucleophile
           hydrolases. One sequence (GP|10716807) has been
           annotated as a "phospholysine phosphohistidine inorganic
           pyrophosphatase," probably in reference to studies on
           similarly described (but unsequenced) enzymes from
           bovine and rat tissues. However, the supporting
           information for this annotation has never been published
           [Unknown function, Enzymes of unknown specificity].
          Length = 257

 Score = 26.4 bits (58), Expect = 0.85
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 10/57 (17%)

Query: 17  VSEDEISTPTTA--QY-RTIPLRPLSFTYDKA-----SI-TSNSLRVVW-EPPKGFS 63
           +SEDE+ TP  A  Q      LRP+    D+       I TS+   VV    P+ FS
Sbjct: 65  ISEDEVFTPAPAARQLLEEKQLRPMLLVDDRVLPDFDGIDTSDPNCVVMGLAPEHFS 121


>gnl|CDD|237187 PRK12743, PRK12743, oxidoreductase; Provisional.
          Length = 256

 Score = 25.8 bits (57), Expect = 1.6
 Identities = 6/20 (30%), Positives = 9/20 (45%)

Query: 10  YNISVQTVSEDEISTPTTAQ 29
           + I V  V+   I+TP    
Sbjct: 174 HGILVNAVAPGAIATPMNGM 193


>gnl|CDD|239393 cd03119, alpha_CA_I_II_III_XIII, Carbonic anhydrase alpha,
          isozymes I, II, and III and XIII.  Carbonic anhydrases
          (CAs) are zinc-containing enzymes that catalyze the
          reversible hydration of carbon dioxide in a two-step
          mechanism: a nucleophilic attack of a zinc-bound
          hydroxide ion on carbon dioxide, followed by the
          regeneration of the active site by ionization of the
          zinc-bound water molecule and removal of a proton from
          the active site. They are ubiquitous enzymes involved
          in fundamental processes like photosynthesis,
          respiration, pH homeostasis and ion transport. Most
          alpha CAs are monomeric enzymes.  The zinc ion is
          complexed by three histidines. This vertebrate subgroup
          comprises isozymes I, II, and III, which are
          cytoplasmic enzymes. CA I, for example, is expressed in
          erythrocyes of many vertebrates; CA II is the most
          active cytosolic isozyme; while it is being expressed
          nearly ubiquitously, it comprises 95% of the renal
          carbonic anhydrase and is  required for renal
          acidification; CA III has been implicated in protection
          from the damaging effect of oxidizing agents in
          hepatocytes. CAXIII may play important physiological
          roles in several organs.
          Length = 259

 Score = 23.9 bits (52), Expect = 6.7
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 7/42 (16%)

Query: 21 EISTPTTAQYRTIPLRPLSFTYDKAS---ITSN--SLRVVWE 57
          +I T   A++    L+PLS +YD A+   I +N  S  V ++
Sbjct: 32 DIKT-KDAKHDP-SLKPLSVSYDPATAKTILNNGHSFNVEFD 71


>gnl|CDD|233502 TIGR01640, F_box_assoc_1, F-box protein interaction domain.  This
          model describes a large family of plant domains, with
          several hundred members in Arabidopsis thaliana. Most
          examples are found C-terminal to an F-box (pfam00646),
          a 60 amino acid motif involved in ubiquitination of
          target proteins to mark them for degradation. Two-hybid
          experiments support the idea that most members are
          interchangeable F-box subunits of SCF E3 complexes.
          Some members have two copies of this domain.
          Length = 230

 Score = 23.9 bits (52), Expect = 7.1
 Identities = 5/22 (22%), Positives = 9/22 (40%)

Query: 22 ISTPTTAQYRTIPLRPLSFTYD 43
          +  P+T Q R +P      +  
Sbjct: 18 VWNPSTGQSRWLPTPKSRRSNK 39


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.316    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0591    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 3,188,330
Number of extensions: 211332
Number of successful extensions: 176
Number of sequences better than 10.0: 1
Number of HSP's gapped: 176
Number of HSP's successfully gapped: 7
Length of query: 65
Length of database: 10,937,602
Length adjustment: 36
Effective length of query: 29
Effective length of database: 9,340,858
Effective search space: 270884882
Effective search space used: 270884882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.5 bits)