RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy4958
(65 letters)
>1qr4_A Protein (tenascin); fibronectin type-III, heparin, extracellular
matrix, adhesion, fusion protein, structural protein;
2.55A {Gallus gallus} SCOP: b.1.2.1 b.1.2.1
Length = 186
Score = 45.9 bits (109), Expect = 4e-08
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 2/55 (3%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKG 61
G Y IS+ S PTT + T+ P ++ IT NS V W PP+
Sbjct: 68 GTEYTISLVAEKGRHKSKPTTIKGSTVVGSPKGISFS--DITENSATVSWTPPRS 120
Score = 26.6 bits (59), Expect = 0.47
Identities = 8/28 (28%), Positives = 14/28 (50%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIP 34
G YN+++ +V E S P + +T
Sbjct: 157 GVDYNVNIISVKGFEESEPISGILKTAL 184
Score = 24.7 bits (54), Expect = 2.3
Identities = 6/31 (19%), Positives = 8/31 (25%), Gaps = 2/31 (6%)
Query: 31 RTIPLRPLSFTYDKASITSNSLRVVWEPPKG 61
T P T +L + W P
Sbjct: 4 GTDLDNPKDLEVS--DPTETTLSLRWRRPVA 32
>1tdq_A Tenascin-R; extracellular matrix, lecticans, tenascins,
protein-protein interactions, C-type lectin domain;
2.60A {Rattus norvegicus} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
Length = 283
Score = 43.6 bits (103), Expect = 4e-07
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKG 61
G Y + + V + S P T RT P + + S+ ++W G
Sbjct: 170 GTEYGVGISAVMNSKQSIPATMNARTELDSPRDLMVT--ASSETSISLIWTKASG 222
Score = 38.3 bits (89), Expect = 3e-05
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 2/55 (3%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKG 61
G Y +S+ V S ++ Q+ T P + S T+ SL + W+ +
Sbjct: 78 GSRYEVSISAVRGTNESDASSTQFTTEIDAPKNLRVG--SRTATSLDLEWDNSEA 130
Score = 23.2 bits (50), Expect = 6.7
Identities = 7/26 (26%), Positives = 10/26 (38%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRT 32
G Y IS+ + S +T T
Sbjct: 258 GAEYIISITAERGRQQSLESTVDAFT 283
>1fnf_A Fibronectin; RGD, extracellular matrix, cell adhesion protein;
2.00A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1
b.1.2.1 PDB: 1mfn_A 2mfn_A 2ck2_A
Length = 368
Score = 40.6 bits (95), Expect = 4e-06
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 2/56 (3%)
Query: 6 TGRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKG 61
G Y +SV +V E STP + +T P + IT+NS V W P+
Sbjct: 158 PGTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFS--DITANSFTVHWIAPRA 211
Score = 38.3 bits (89), Expect = 4e-05
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKG 61
G YN+SV TV +D+ S P + P + +I +++RV W PP
Sbjct: 68 GLEYNVSVYTVKDDKESVPISDTIIPAVPPPTDLRFT--NIGPDTMRVTWAPPPS 120
Score = 32.9 bits (75), Expect = 0.003
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKG 61
G Y +S+ ++ E S Q T+ P + T SL + W+ P
Sbjct: 249 GTEYVVSIVALNGREESPLLIGQQSTVSDVPRDLEVV--AATPTSLLISWDAPAV 301
>3r8q_A Fibronectin; heparin, FNIII, heparin binding, cell adhesion; 2.40A
{Homo sapiens} PDB: 1fnh_A
Length = 290
Score = 39.8 bits (93), Expect = 1e-05
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKG 61
G Y I + T++++ S+P T P + + + T NSL V W+PP+
Sbjct: 175 GTDYKIYLYTLNDNARSSPVVIDASTAIDAPSNLRFL--ATTPNSLLVSWQPPRA 227
Score = 31.3 bits (71), Expect = 0.010
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 8/59 (13%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTI----PLRPLSFTYDKASITSNSLRVVWEPPKG 61
Y +SV + + S P T+ P R T T ++ + W
Sbjct: 84 ATKYEVSVYALKDTLTSRPAQGVVTTLENVSPPRRARVT----DATETTITISWRTKTE 138
Score = 25.5 bits (56), Expect = 1.2
Identities = 10/48 (20%), Positives = 15/48 (31%), Gaps = 7/48 (14%)
Query: 17 VSEDEISTPTTAQYRTIPL---RPLSFTYDKASITSNSLRVVWEPPKG 61
S+ ++ + L FT +T SL W PP
Sbjct: 3 HHHHHHSSGLEVLFQGPAIPAPTDLKFT----QVTPTSLSAQWTPPNV 46
Score = 23.6 bits (51), Expect = 6.1
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRT 32
G Y I V + ++ S P + +T
Sbjct: 265 GTEYTIYVIALKNNQKSEPLIGRKKT 290
>3t1w_A Four-domain fibronectin fragment; human fibronectin, FN type-III
domain, oncofetal splice VARI extra-domain B, EIIIB,
ED-B, angiogenesis, integrin; 2.40A {Homo sapiens}
Length = 375
Score = 39.0 bits (91), Expect = 2e-05
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKG 61
G YN+SV TV +D+ S P + + ++ IT +S+ + W P
Sbjct: 69 GLEYNVSVYTVKDDKESVPISDTIIPEVPQLTDLSFV--DITDSSIGLRWTPLNS 121
Score = 39.0 bits (91), Expect = 2e-05
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 6 TGRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKG 61
G Y+ISV T+ S PTT +T P + +I +++RV W PP
Sbjct: 159 PGIDYDISVITLINGGESAPTTLTQQTAVPPPTDLRFT--NIGPDTMRVTWAPPPS 212
Score = 37.9 bits (88), Expect = 4e-05
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKG 61
G Y +SV +V E STP + +T P + IT+NS V W P+
Sbjct: 251 GTEYVVSVSSVYEQHESTPLRGRQKTGLDSPTGIDFS--DITANSFTVHWIAPRA 303
Score = 27.1 bits (60), Expect = 0.36
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRP 37
G Y +S+ ++ E S Q T+
Sbjct: 341 GTEYVVSIVALNGREESPLLIGQQSTVSAHH 371
>2gee_A Hypothetical protein; fibronectin, EIIIB, cancer,
neovascularization, cell adhesion, protein binding,
oncoprotein; 2.01A {Homo sapiens} PDB: 2fnb_A
Length = 203
Score = 37.5 bits (87), Expect = 6e-05
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKG 61
G Y+ISV TV STPTT +T P + +I +++RV W PP
Sbjct: 87 GIDYDISVYTVKNGGESTPTTLTQQTAVPPPTDLRFT--NIGPDTMRVTWAPPPS 139
Score = 26.7 bits (59), Expect = 0.46
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRT 32
G Y +SV +V E STP + +T
Sbjct: 178 GTEYVVSVSSVYEQHESTPLRGRQKT 203
Score = 23.6 bits (51), Expect = 5.8
Identities = 7/50 (14%), Positives = 14/50 (28%), Gaps = 2/50 (4%)
Query: 12 ISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKG 61
+ S +P ++ IT +S+ + W P
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMEVPQPTDLSFV--DITDSSIGLRWTPLNS 48
>3l5i_A Interleukin-6 receptor subunit beta; cytokine receptor, fibronectin
type III domain, alternative cell membrane, disulfide
bond; 1.90A {Homo sapiens} PDB: 3l5j_A
Length = 290
Score = 30.2 bits (68), Expect = 0.025
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 1/55 (1%)
Query: 6 TGRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKA-SITSNSLRVVWEPP 59
+ Y I+V V D +P + + P + + N + W+
Sbjct: 166 ESKCYLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKKVGKNEAVLEWDQL 220
Score = 29.8 bits (67), Expect = 0.035
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 1/57 (1%)
Query: 6 TGRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYD-KASITSNSLRVVWEPPKG 61
T Y ++ + S + D KA N L V W P+
Sbjct: 70 TNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDLKAFPKDNMLWVEWTTPRE 126
>2dkm_A Collagen alpha-1(XX) chain; FN3 domain, KIAA1510, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 104
Score = 28.6 bits (64), Expect = 0.069
Identities = 11/31 (35%), Positives = 15/31 (48%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRP 37
GR Y +SVQ++ E S + RT P
Sbjct: 71 GRDYEVSVQSLRGPEGSEARGIRARTPTSGP 101
Score = 23.6 bits (51), Expect = 5.1
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 46 SITSNSLRVVWEPPKGFS 63
++T ++ + W+P G +
Sbjct: 19 AVTPRTVHLTWQPSAGAT 36
>3tes_A Tencon; fibronectin type III domain, FN3, consensus design, de
novo; 2.50A {Synthetic}
Length = 98
Score = 27.8 bits (62), Expect = 0.10
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRP 37
G Y +S+ V S P +A++ T
Sbjct: 65 GTEYTVSIYGVKGGHRSNPLSAEFTTGGHHH 95
Score = 23.2 bits (50), Expect = 6.6
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 46 SITSNSLRVVWEPPKG 61
+T +SLR+ W P
Sbjct: 12 EVTEDSLRLSWTAPDA 27
>2ha1_A Fibronectin; beta sandwich, protein-protein complex, rigid BODY
docking, cell adhesion, structural protein; NMR {Homo
sapiens}
Length = 201
Score = 28.1 bits (62), Expect = 0.17
Identities = 15/59 (25%), Positives = 19/59 (32%), Gaps = 1/59 (1%)
Query: 4 IGTGRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKAS-ITSNSLRVVWEPPKG 61
G T S T T T P PL T + + IT++S V W
Sbjct: 79 YGHQEVTRFDFTTTSTSTPVTSNTVTGETTPFSPLVATSESVTEITASSFVVSWVSASD 137
>2ocf_D Fibronectin; estrogen receptor, LBD, monobody, estradiol,
hormone-growth complex; HET: CME EST; 2.95A {Homo
sapiens}
Length = 121
Score = 27.2 bits (60), Expect = 0.26
Identities = 7/52 (13%), Positives = 16/52 (30%), Gaps = 2/52 (3%)
Query: 10 YNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKG 61
++ +D+ ++ P + T SL + W+ P
Sbjct: 5 HHHHSSDYKDDDDKGENLYFQGSVSDVPTKLEVV--AATPTSLLISWDAPAV 54
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 27.2 bits (59), Expect = 0.36
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 10 YNISVQTVSEDEI----STPTTAQYRTIPLRP---LSFTYDKASITSNSLRVVWEPPK 60
Y I +Q ++D S RT+P + +N + ++W+ PK
Sbjct: 760 YRIELQACNQDTPEERCSVAAYVSARTMPEAKADDIVGPVTHEIFENNVVHLMWQEPK 817
Score = 26.0 bits (56), Expect = 0.95
Identities = 11/56 (19%), Positives = 20/56 (35%), Gaps = 8/56 (14%)
Query: 8 RAYNI----SVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPP 59
+ ++ +I T T P PL S +S+ + + W+PP
Sbjct: 567 KTLVTFSDERRTYGAKSDIIYVQTDA--TNPSVPLDPI--SVSNSSSQIILKWKPP 618
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 26.9 bits (59), Expect = 0.45
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 6 TGRAYNISVQTVSED---EISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKG 61
T Y ++ + + + T P+ KA N L V W P+
Sbjct: 369 TNDRYLATLTVRNLVGKSDAAVLTIPACDFQATHPVMDL--KAFPKDNMLWVEWTTPRE 425
Score = 26.5 bits (58), Expect = 0.57
Identities = 8/54 (14%), Positives = 18/54 (33%), Gaps = 4/54 (7%)
Query: 10 YNISVQTVSEDEISTPTTAQYRT----IPLRPLSFTYDKASITSNSLRVVWEPP 59
+ V+ + T + P P + + + S+ L++ W P
Sbjct: 171 IEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNP 224
Score = 25.0 bits (54), Expect = 1.8
Identities = 10/53 (18%), Positives = 19/53 (35%), Gaps = 5/53 (9%)
Query: 10 YNISVQTVSEDEISTPTTAQYRT---IPLRPLSFTYDKASITSNSLRVVWEPP 59
Y I+V V D +P + + P + + K + N + W+
Sbjct: 469 YLITVTPVYADGPGSPESIKAYLKQAPPSKGPTVRTKK--VGKNEAVLEWDQL 519
>2cuh_A Tenascin-X; fibronectin type III domain, extracellular matrix,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 115
Score = 25.9 bits (57), Expect = 0.67
Identities = 5/43 (11%), Positives = 16/43 (37%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITS 49
Y +V+ + +++P + + T P + + +
Sbjct: 69 HTNYTATVRGLRGPNLTSPASITFTTGLEAPRDLEAKEVTPSG 111
Score = 23.6 bits (51), Expect = 4.3
Identities = 6/34 (17%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Query: 28 AQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKG 61
+ + P P ++T + W+PP+
Sbjct: 2 SSGSSGPDGPTQLRA--LNLTEGFAVLHWKPPQN 33
>3teu_A Fibcon; FN3 domain, fibronectin TPYE III domain, consensus
design, S de novo protein; HET: DIO; 1.00A {Synthetic}
Length = 98
Score = 25.9 bits (57), Expect = 0.68
Identities = 7/31 (22%), Positives = 12/31 (38%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRP 37
G Y +SV + +++ S P T
Sbjct: 65 GVEYVVSVYALKDNQESPPLVGTQTTGGHHH 95
Score = 23.2 bits (50), Expect = 6.7
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 46 SITSNSLRVVWEPPKG 61
++T S+ V W PP
Sbjct: 12 NVTDTSITVSWTPPSA 27
>2cui_A Tenascin-X; fibronectin type III domain, extracellular matirx,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 112
Score = 25.7 bits (56), Expect = 0.77
Identities = 4/31 (12%), Positives = 11/31 (35%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRP 37
G Y++++ + + RT+
Sbjct: 80 GTLYSLTLYGLRGPHKADSIQGTARTLSGPS 110
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 26.2 bits (57), Expect = 0.87
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 7/27 (25%)
Query: 33 IPLRPLSFTYDKASITSNSLRVVWEPP 59
RPL +++ SL V P
Sbjct: 4 YSTRPL-------TLSHGSLEHVLLVP 23
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 25.9 bits (56), Expect = 1.1
Identities = 12/57 (21%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRT---IPLRPLSFTYDKASITSNSLRVVWEPPK 60
G Y+ +++ + P T Q+ T P P + T N++ V+ +P
Sbjct: 536 GTTYSFTIRASTAKGFGPPATNQFTTKISAPSMPAYELETPLNQTDNTVTVMLKPAH 592
Score = 24.4 bits (52), Expect = 3.0
Identities = 5/58 (8%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 6 TGRAYNISVQTVSEDEISTPTTAQYRT---IPLRPLSFTYDKASITSNSLRVVWEPPK 60
++ + ++ + +T +P + + S + + W P
Sbjct: 431 PYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPTESIQG-STFEEKIFLQWREPT 487
Score = 24.0 bits (51), Expect = 4.5
Identities = 8/55 (14%), Positives = 12/55 (21%), Gaps = 6/55 (10%)
Query: 8 RAYNISVQTVSE--DEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPK 60
+ T T R L + S + + WEP
Sbjct: 334 LLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVV----EVKSRQITIRWEPFG 384
>1j8k_A Fibronectin; EDA, TYPEIII domain, protein binding; NMR {Homo
sapiens} SCOP: b.1.2.1
Length = 94
Score = 25.1 bits (55), Expect = 1.3
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRT 32
G Y +SV + +D S P T
Sbjct: 65 GSEYTVSVVALHDDMESQPLIGTQST 90
Score = 24.7 bits (54), Expect = 1.8
Identities = 5/16 (31%), Positives = 11/16 (68%)
Query: 46 SITSNSLRVVWEPPKG 61
+ +S+++ WE P+G
Sbjct: 12 DVDVDSIKIAWESPQG 27
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera
phosphorylation, transmembrane, tyrosine-protein kinase,
glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB:
2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Length = 536
Score = 25.1 bits (54), Expect = 1.6
Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 6/57 (10%)
Query: 7 GRAYNISVQT---VSEDEISTPTTAQY-RTIPLRPLSFTYDKASITSNSLRVVWEPP 59
Y +V+ VS S P + ++ SL V W P
Sbjct: 410 HMNYTFTVEARNGVSGLVTSRSFRTASVSINQTEPPKVRLE--GRSTTSLSVSWSIP 464
>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor
complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1
b.1.2.1 b.1.2.1 PDB: 1p9m_A
Length = 303
Score = 25.2 bits (54), Expect = 1.7
Identities = 9/54 (16%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 10 YNISVQTVSEDEISTPT----TAQYRTIPLRPLSFTYDKASITSNSLRVVWEPP 59
+ V+ + T Y+ P P + + + S+ L++ W P
Sbjct: 172 IEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNP 225
>2ee3_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 108
Score = 24.7 bits (54), Expect = 1.8
Identities = 8/36 (22%), Positives = 14/36 (38%), Gaps = 7/36 (19%)
Query: 29 QYRTIPLRP---LSFTYDKASITSNSLRVVWEPPKG 61
+ L P L F+ ++ ++ RV WE
Sbjct: 2 SSGSSGLAPPRHLGFS----DVSHDAARVFWEGAPR 33
Score = 23.1 bits (50), Expect = 6.8
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRP 37
Y + V + S+ T + T
Sbjct: 70 STTYTVRVTCLYPGGGSSTLTGRVTTKKAPS 100
>3qt2_A Interleukin-5 receptor subunit alpha; cytokine type I receptor
fold, fibronectin type III modules, helical bundle,
cytokine, ligand-receptor complex; HET: BGC; 2.55A {Homo
sapiens}
Length = 317
Score = 24.8 bits (53), Expect = 2.1
Identities = 12/59 (20%), Positives = 18/59 (30%), Gaps = 7/59 (11%)
Query: 10 YNISVQTVSEDEISTPTTAQYRT----IPLRPLSFTYDKASITSNSLRVVWEPPKGFSP 64
+ V S+ P + PL+ T A I + + WE P P
Sbjct: 193 LAVLVNGSSKHSAIRPFDQLFALHAIDQINPPLNVT---AEIEGTRMSIQWEKPVSAFP 248
>2cum_A Tenascin-X; hexabrachion-like, fibronectin type III domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 105
Score = 24.3 bits (53), Expect = 2.1
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRP 37
+YN +Q + + P + + T LR
Sbjct: 69 STSYNARLQAMWGQSLLPPVSTSFTTGGLRI 99
>3b83_A Ten-D3; beta sheet, computational redesigned protein, alternative
splicing, cell adhesion, coiled coil, EGF-like domain,
extracellular matrix; 2.40A {Homo sapiens}
Length = 100
Score = 24.3 bits (53), Expect = 2.3
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 46 SITSNSLRVVWEPPKG 61
+IT + V W+PP
Sbjct: 12 NITLTTAVVTWQPPIL 27
Score = 23.5 bits (51), Expect = 4.1
Identities = 6/31 (19%), Positives = 11/31 (35%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRP 37
Y I + + + S P + + T L
Sbjct: 65 NTTYEIRIVARNGQQYSPPVSTTFTTGSLEH 95
>1bqu_A Protein (GP130); cytokine receptor, glycoprotein 130, interleukine
6 R beta subunit, signaling protein; 2.00A {Homo
sapiens} SCOP: b.1.2.1 b.1.2.1 PDB: 1pvh_A 1bj8_A
Length = 215
Score = 24.6 bits (53), Expect = 3.0
Identities = 10/60 (16%), Positives = 20/60 (33%), Gaps = 4/60 (6%)
Query: 10 YNISVQTVSEDEISTPT----TAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPKGFSPF 65
+ V+ + T Y+ P P + + + S+ L++ W P S
Sbjct: 76 IEVWVEAENALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSIKSVI 135
>2ekj_A Collagen alpha-1(XX) chain; KIAA1510, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 105
Score = 23.9 bits (52), Expect = 3.2
Identities = 9/16 (56%), Positives = 11/16 (68%)
Query: 46 SITSNSLRVVWEPPKG 61
S T +SL+V W PP G
Sbjct: 18 SETPDSLQVSWTPPLG 33
Score = 22.8 bits (49), Expect = 8.1
Identities = 5/31 (16%), Positives = 9/31 (29%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIPLRP 37
Y + V + S +A +T
Sbjct: 71 ATKYRVLVSAIYAAGRSEAVSATGQTACPSG 101
>3qht_C Monobody YSMB-1; fibronectin type III, yeast small ubiquitin-like
modifier, S NOVO protein; 2.40A {Artificial gene}
Length = 97
Score = 23.9 bits (52), Expect = 3.6
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 46 SITSNSLRVVWEPPKG 61
+ T SL + W+
Sbjct: 15 AATPTSLLISWDASSS 30
>3f7q_A Integrin beta-4, GP150; hemidesmosome, cell adhesion, carcinoma,
epidermolysis bullosa, alternative splicing, disease
mutation, glycoprotein; HET: 1PE PG4; 1.75A {Homo
sapiens} PDB: 3f7r_A 3f7p_C 1qg3_A
Length = 234
Score = 24.0 bits (52), Expect = 3.6
Identities = 5/16 (31%), Positives = 7/16 (43%)
Query: 46 SITSNSLRVVWEPPKG 61
+ S + W PP G
Sbjct: 16 AAGSRKIHFNWLPPSG 31
Score = 23.6 bits (51), Expect = 4.9
Identities = 6/39 (15%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 23 STPTTAQ-YRTIPLRPLSFTYDKASITSNSLRVVWEPPK 60
S+ + + ++ +P P ++ ++S ++ W P
Sbjct: 87 SSLVSCRTHQEVPSEPGRLAFN--VVSSTVTQLSWAEPA 123
>3qwq_B Adnectin; cell surface receptor, tyrosine kinase, glycoprotein,
adnect antitumor, drug, engineered binding protein;
HET: NAG BMA MAN FUC; 2.75A {Homo sapiens} PDB: 3qwr_D*
Length = 114
Score = 23.7 bits (51), Expect = 3.9
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 46 SITSNSLRVVWEPPKG 61
+ T SL + W+ +G
Sbjct: 14 AATPTSLLISWDSGRG 29
>2rb8_A Tenascin; beta sheet,loop design, alternative splicing, cell
adhesion, coiled coil, EGF-like domain, extracellular
matrix, glycoprotein; 1.45A {Homo sapiens} PDB: 2rbl_A
1ten_A
Length = 104
Score = 23.5 bits (51), Expect = 4.2
Identities = 4/16 (25%), Positives = 7/16 (43%)
Query: 46 SITSNSLRVVWEPPKG 61
+T + + W PP
Sbjct: 13 DVTDTTALITWMPPSQ 28
Score = 22.7 bits (49), Expect = 9.2
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRT 32
Y +S+ + D S P + T
Sbjct: 66 DTEYEVSLISRRGDMSSNPAKETFTT 91
>2yrz_A Integrin beta-4; GP150, CD104 antigen, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 118
Score = 23.5 bits (51), Expect = 4.9
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 46 SITSNSLRVVWEPPKGFSP 64
++ SLRV W+ P+ P
Sbjct: 28 ALGPTSLRVSWQEPRCERP 46
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 23.8 bits (50), Expect = 5.0
Identities = 12/57 (21%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 4 IGTGRAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPK 60
GT S S + S P LR + T + + + +VW+ P+
Sbjct: 246 HGTRGFTAPSKHFRSSKDPSAPPAPA----NLRLANSTVNSDGSVT--VTIVWDLPE 296
>2edy_A Receptor-type tyrosine-protein phosphatase F; LAR protein,
leukocyte antigen related, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 103
Score = 23.4 bits (51), Expect = 5.0
Identities = 4/14 (28%), Positives = 10/14 (71%)
Query: 46 SITSNSLRVVWEPP 59
+T+++ + W+PP
Sbjct: 19 GLTTSTTELAWDPP 32
>3n06_B PRL-R, prolactin receptor; PH dependence, hematopoietic cytokine,
hormone-hormone recep complex; 2.00A {Homo sapiens} PDB:
3mzg_B 3n0p_B 3ncb_B 1bp3_B 3d48_R 3nce_B 3ncc_B 3ncf_B
3ew3_B 3npz_B 1f6f_B 2lfg_A
Length = 210
Score = 23.9 bits (51), Expect = 5.1
Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 1/52 (1%)
Query: 8 RAYNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPP 59
A N + + DE+ T + P L+ + L + W PP
Sbjct: 80 NATN-QMGSSFSDELYVDVTYIVQPDPPLELAVEVKQPEDRKPYLWIKWSPP 130
>1x5i_A Neogenin; RGM binding, fibronectin type III domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
SCOP: b.1.2.1
Length = 126
Score = 23.6 bits (51), Expect = 5.8
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 44 KASITSNSLRVVWEPPK 60
S+ V W PP+
Sbjct: 35 HVRPLVTSIVVSWTPPE 51
>3k2m_C Monobody HA4; engineered binding protein, antibody mimic,
protein-protein SH2 domain, ATP-binding,
phosphoprotein; 1.75A {Homo sapiens} PDB: 3uyo_D 1ttf_A
1ttg_A 3rzw_A 1fna_A
Length = 101
Score = 23.2 bits (50), Expect = 5.8
Identities = 5/16 (31%), Positives = 8/16 (50%)
Query: 46 SITSNSLRVVWEPPKG 61
+ T SL + W+ P
Sbjct: 15 AATPTSLLISWDAPMS 30
>3lqm_A Interleukin-10 receptor subunit beta; IL-10R2, common chain,
cytokine, IL-10, IL-22, IL- 28, IL-29, disulfide bond,
glycoprotein, membrane; 2.14A {Homo sapiens}
Length = 201
Score = 23.5 bits (50), Expect = 7.0
Identities = 7/51 (13%), Positives = 19/51 (37%)
Query: 10 YNISVQTVSEDEISTPTTAQYRTIPLRPLSFTYDKASITSNSLRVVWEPPK 60
+ + V+ DE S + + + + + ++ L + + PK
Sbjct: 66 HTLRVRAEFADEHSDWVQITFSPVDDTIIGPPGMQVEVLADCLHMRFLAPK 116
>2h41_A Fibronectin; beta sandwich, cell adhesion, structural protein;
NMR {Homo sapiens} PDB: 2h45_A
Length = 95
Score = 22.9 bits (49), Expect = 7.2
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRT 32
GR Y ++V +SED + + +T
Sbjct: 69 GRKYIVNVYQISEDGEQSLILSTSQT 94
>2dle_A Receptor-type tyrosine-protein phosphatase ETA; protein-tyrosine
phosphatase ETA, R-PTP-ETA, HPTP ETA, protein-tyrosine
phosphatase receptor type J; NMR {Homo sapiens}
Length = 104
Score = 23.1 bits (49), Expect = 7.7
Identities = 11/28 (39%), Positives = 12/28 (42%)
Query: 7 GRAYNISVQTVSEDEISTPTTAQYRTIP 34
YNI+V V D TP Q T P
Sbjct: 69 STFYNITVCPVLGDIEGTPGFLQVHTPP 96
>2vkw_A Neural cell adhesion molecule 1,140 kDa isoform; adhesion
receptor; 2.3A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1
PDB: 2vkx_A 1lwr_A
Length = 209
Score = 23.2 bits (50), Expect = 7.9
Identities = 3/16 (18%), Positives = 9/16 (56%)
Query: 45 ASITSNSLRVVWEPPK 60
S++ +V ++ P+
Sbjct: 17 VEPYSSTAQVQFDEPE 32
>1wfo_A Sidekick 2; FN3, cell adhesion, structural genomics, riken
structural genomics/proteomics initiative, RSGI; NMR
{Homo sapiens} SCOP: b.1.2.1
Length = 130
Score = 23.1 bits (50), Expect = 8.1
Identities = 5/15 (33%), Positives = 11/15 (73%)
Query: 46 SITSNSLRVVWEPPK 60
+ + S+R++W+PP
Sbjct: 38 EVRTTSVRLIWQPPA 52
>3se4_A Interferon alpha/beta receptor 1; type I interferon signaling
complex, extracellular space, IM system receptor; HET:
NAG; 3.50A {Homo sapiens} PDB: 3se3_A*
Length = 414
Score = 23.4 bits (49), Expect = 8.4
Identities = 10/52 (19%), Positives = 15/52 (28%), Gaps = 1/52 (1%)
Query: 10 YNISVQTVSEDEISTPTTAQY-RTIPLRPLSFTYDKASITSNSLRVVWEPPK 60
Y + VQ + S + T L S+S + PK
Sbjct: 281 YLLRVQASDGNNTSFWSEEIKFDTEIQAFLLPPVFNIRSLSDSFHIYIGAPK 332
>1x5z_A Receptor-type tyrosine-protein phosphatase delta; fibronectin
type III domain containing protein, structural
genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.2.1
Length = 115
Score = 22.7 bits (49), Expect = 8.9
Identities = 4/14 (28%), Positives = 7/14 (50%)
Query: 46 SITSNSLRVVWEPP 59
+ S+ + W PP
Sbjct: 28 PESETSILLSWTPP 41
>2edb_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 116
Score = 22.8 bits (49), Expect = 9.4
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 44 KASITSNSLRVVWEPPK 60
+N + + W PP
Sbjct: 25 HVRPQTNCIIMSWTPPL 41
>2ed8_A Netrin receptor DCC; tumor suppressor protein DCC, colorectal
cancer suppressor, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 106
Score = 22.6 bits (49), Expect = 9.5
Identities = 6/15 (40%), Positives = 9/15 (60%)
Query: 46 SITSNSLRVVWEPPK 60
S + S+ + WEPP
Sbjct: 18 STSPTSILITWEPPA 32
>3p4l_A Neogenin; iron homeostasis, hemojuvelin receptor, FNIII domain,
fibron type III, cell adhesion; 1.80A {Homo sapiens}
PDB: 1x5k_A
Length = 211
Score = 22.8 bits (49), Expect = 9.8
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 37 PLSFTYDKASITSNSLRVVWEPPK 60
P T ++ V W+PP
Sbjct: 109 PKDVTVVSKEGKPKTIIVNWQPPS 132
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.132 0.386
Gapped
Lambda K H
0.267 0.0670 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 936,076
Number of extensions: 38837
Number of successful extensions: 239
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 135
Length of query: 65
Length of database: 6,701,793
Length adjustment: 36
Effective length of query: 29
Effective length of database: 5,696,637
Effective search space: 165202473
Effective search space used: 165202473
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.5 bits)