RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy4958
         (65 letters)



>d2cuma1 b.1.2.1 (A:7-99) Tenascin-X {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 93

 Score = 25.2 bits (54), Expect = 0.49
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 7  GRAYNISVQTVSEDEISTPTTAQYRTIPLR 36
            +YN  +Q +    +  P +  + T  LR
Sbjct: 63 STSYNARLQAMWGQSLLPPVSTSFTTGGLR 92


>d1wf5a1 b.1.2.1 (A:8-115) Sidekick 2 {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 108

 Score = 24.4 bits (52), Expect = 0.93
 Identities = 5/29 (17%), Positives = 12/29 (41%)

Query: 31 RTIPLRPLSFTYDKASITSNSLRVVWEPP 59
          R +P  P       +++   ++ + W  P
Sbjct: 8  RQLPHAPEHPVATLSTVERRAINLTWTKP 36


>d1fnha3 b.1.2.1 (A:183-271) Fibronectin, different Fn3 modules
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 89

 Score = 23.3 bits (49), Expect = 1.9
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 7  GRAYNISVQTVSEDEISTPTTAQYRT 32
          G  Y I V  +  ++ S P   + +T
Sbjct: 64 GTEYTIYVIALKNNQKSEPLIGRKKT 89


>d1qr4a2 b.1.2.1 (A:88-175) Tenascin {Chicken (Gallus gallus)
          [TaxId: 9031]}
          Length = 88

 Score = 23.3 bits (49), Expect = 2.4
 Identities = 8/26 (30%), Positives = 14/26 (53%)

Query: 7  GRAYNISVQTVSEDEISTPTTAQYRT 32
          G  YN+++ +V   E S P +   +T
Sbjct: 63 GVDYNVNIISVKGFEESEPISGILKT 88


>d1qr4a1 b.1.2.1 (A:1-87) Tenascin {Chicken (Gallus gallus)
          [TaxId: 9031]}
          Length = 87

 Score = 22.5 bits (47), Expect = 3.4
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 7  GRAYNISVQTVSEDEISTPTTAQYRTI 33
          G  Y IS+        S PTT +  T+
Sbjct: 61 GTEYTISLVAEKGRHKSKPTTIKGSTV 87



 Score = 21.7 bits (45), Expect = 8.7
 Identities = 4/16 (25%), Positives = 6/16 (37%)

Query: 46 SITSNSLRVVWEPPKG 61
            T  +L + W  P  
Sbjct: 10 DPTETTLSLRWRRPVA 25


>d1fnfa2 b.1.2.1 (A:1236-1326) Fibronectin, different Fn3 modules
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 91

 Score = 22.5 bits (47), Expect = 3.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 7  GRAYNISVQTVSEDEISTPTTAQYRT 32
          G  Y +SV +V E   STP   + +T
Sbjct: 65 GTEYVVSVSSVYEQHESTPLRGRQKT 90


>d1tdqa2 b.1.2.1 (A:94-185) Tenascin {Rat (Rattus norvegicus)
          [TaxId: 10116]}
          Length = 92

 Score = 22.5 bits (47), Expect = 3.8
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 7  GRAYNISVQTVSEDEISTPTTAQYRT 32
          G  Y + +  V   + S P T   RT
Sbjct: 66 GTEYGVGISAVMNSKQSIPATMNART 91


>d2dtge3 b.1.2.1 (E:468-592) Insulin receptor {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 125

 Score = 22.7 bits (47), Expect = 4.7
 Identities = 6/24 (25%), Positives = 11/24 (45%), Gaps = 2/24 (8%)

Query: 37 PLSFTYDKASITSNSLRVVWEPPK 60
           L F+Y     + + + + WEP  
Sbjct: 5  LLKFSYI--RTSFDKILLRWEPYW 26


>d1fnha2 b.1.2.1 (A:93-182) Fibronectin, different Fn3 modules
          {Human (Homo sapiens) [TaxId: 9606]}
          Length = 90

 Score = 22.2 bits (46), Expect = 6.4
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 7  GRAYNISVQTVSEDEISTPTTAQYRT 32
          G  Y I + T++++  S+P      T
Sbjct: 64 GTDYKIYLYTLNDNARSSPVVIDAST 89


>d1j8ka_ b.1.2.1 (A:) Fibronectin, different Fn3 modules {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 94

 Score = 22.1 bits (46), Expect = 6.6
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 7  GRAYNISVQTVSEDEISTPTTAQYRT 32
          G  Y +SV  + +D  S P      T
Sbjct: 65 GSEYTVSVVALHDDMESQPLIGTQST 90


>d2cuha1 b.1.2.1 (A:8-109) Tenascin-X {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 102

 Score = 21.9 bits (45), Expect = 7.2
 Identities = 5/32 (15%), Positives = 13/32 (40%)

Query: 10 YNISVQTVSEDEISTPTTAQYRTIPLRPLSFT 41
          Y  +V+ +    +++P +  + T    P    
Sbjct: 65 YTATVRGLRGPNLTSPASITFTTGLEAPRDLE 96


>d1f6fb2 b.1.2.1 (B:101-203) Prolactin receptor {Rat (Rattus
          norvegicus) [TaxId: 10116]}
          Length = 103

 Score = 21.9 bits (45), Expect = 7.5
 Identities = 8/27 (29%), Positives = 10/27 (37%)

Query: 34 PLRPLSFTYDKASITSNSLRVVWEPPK 60
          P R L+    +       L V W PP 
Sbjct: 5  PPRNLTLEVKQLKDKKTYLWVKWSPPT 31


>d2cuia1 b.1.2.1 (A:6-106) Tenascin-X {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 101

 Score = 21.9 bits (45), Expect = 8.6
 Identities = 4/27 (14%), Positives = 11/27 (40%)

Query: 7   GRAYNISVQTVSEDEISTPTTAQYRTI 33
           G  Y++++  +     +       RT+
Sbjct: 75  GTLYSLTLYGLRGPHKADSIQGTARTL 101


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.132    0.386 

Gapped
Lambda     K      H
   0.267   0.0424    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 227,072
Number of extensions: 7260
Number of successful extensions: 68
Number of sequences better than 10.0: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 38
Length of query: 65
Length of database: 2,407,596
Length adjustment: 34
Effective length of query: 31
Effective length of database: 1,940,776
Effective search space: 60164056
Effective search space used: 60164056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.7 bits)