Query psy496
Match_columns 319
No_of_seqs 247 out of 2527
Neff 8.3
Searched_HMMs 46136
Date Fri Aug 16 22:16:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy496.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/496hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0922|consensus 100.0 2.1E-40 4.5E-45 318.3 19.2 254 47-314 44-304 (674)
2 COG1643 HrpA HrpA-like helicas 100.0 1E-37 2.2E-42 314.4 17.4 263 42-317 38-304 (845)
3 KOG0923|consensus 100.0 3.6E-37 7.9E-42 293.9 18.1 258 9-287 228-485 (902)
4 KOG0924|consensus 100.0 6.5E-35 1.4E-39 279.1 17.6 231 46-291 348-578 (1042)
5 PRK11664 ATP-dependent RNA hel 100.0 8.5E-34 1.8E-38 289.6 17.1 248 53-315 4-254 (812)
6 TIGR01970 DEAH_box_HrpB ATP-de 100.0 1E-33 2.2E-38 288.7 17.5 246 54-314 2-250 (819)
7 KOG0920|consensus 100.0 2.3E-33 4.9E-38 282.3 18.0 197 50-252 169-365 (924)
8 TIGR01967 DEAH_box_HrpA ATP-de 100.0 1.4E-32 3E-37 287.1 20.3 254 47-314 60-320 (1283)
9 PRK11131 ATP-dependent RNA hel 100.0 1.3E-32 2.7E-37 286.6 17.0 255 47-312 67-325 (1294)
10 KOG0925|consensus 100.0 1.3E-32 2.9E-37 255.3 14.3 224 49-287 42-265 (699)
11 KOG0338|consensus 100.0 2.9E-30 6.4E-35 240.8 12.0 242 45-307 204-459 (691)
12 KOG0926|consensus 100.0 3.9E-29 8.4E-34 243.0 17.2 229 47-286 247-492 (1172)
13 KOG0330|consensus 100.0 1.5E-29 3.2E-34 229.7 8.8 218 45-289 84-314 (476)
14 KOG0331|consensus 100.0 2.4E-29 5.2E-34 240.4 9.7 230 45-291 114-357 (519)
15 KOG0343|consensus 100.0 1.2E-28 2.6E-33 231.9 11.1 243 44-311 91-350 (758)
16 COG0513 SrmB Superfamily II DN 99.9 3.2E-27 6.9E-32 232.0 11.5 241 26-290 36-288 (513)
17 KOG0346|consensus 99.9 2.2E-27 4.7E-32 218.4 8.9 241 21-290 25-283 (569)
18 COG1201 Lhr Lhr-like helicases 99.9 2.2E-26 4.8E-31 231.0 15.4 233 32-291 13-269 (814)
19 KOG0342|consensus 99.9 1.8E-26 3.9E-31 215.0 10.4 229 45-299 105-351 (543)
20 KOG0335|consensus 99.9 2.2E-26 4.7E-31 217.0 10.7 268 5-291 48-353 (482)
21 KOG0340|consensus 99.9 1.4E-26 3E-31 208.3 8.0 175 25-216 13-194 (442)
22 PRK02362 ski2-like helicase; P 99.9 9.8E-26 2.1E-30 230.9 13.8 240 25-291 7-259 (737)
23 PRK01172 ski2-like helicase; P 99.9 1.5E-25 3.2E-30 227.8 14.6 238 25-291 7-252 (674)
24 PTZ00110 helicase; Provisional 99.9 1.2E-25 2.7E-30 222.5 13.7 183 26-226 137-330 (545)
25 PLN00206 DEAD-box ATP-dependen 99.9 2.3E-25 4.9E-30 219.7 15.3 171 44-230 143-326 (518)
26 KOG0348|consensus 99.9 7.3E-26 1.6E-30 212.6 9.8 235 45-294 160-443 (708)
27 PRK11776 ATP-dependent RNA hel 99.9 1.5E-25 3.3E-30 218.3 12.1 235 26-289 11-256 (460)
28 PRK10590 ATP-dependent RNA hel 99.9 5.1E-25 1.1E-29 214.3 14.6 236 25-288 7-258 (456)
29 KOG0345|consensus 99.9 9.2E-25 2E-29 202.6 14.7 259 28-312 15-293 (567)
30 KOG0326|consensus 99.9 6.3E-25 1.4E-29 195.2 12.9 214 45-285 108-332 (459)
31 PRK04837 ATP-dependent RNA hel 99.9 1.2E-24 2.5E-29 210.0 14.8 191 25-233 14-220 (423)
32 PHA02653 RNA helicase NPH-II; 99.9 3.8E-24 8.2E-29 214.2 18.6 250 47-311 158-432 (675)
33 TIGR03817 DECH_helic helicase/ 99.9 6.3E-25 1.4E-29 223.8 13.2 193 22-234 13-223 (742)
34 KOG0952|consensus 99.9 9.5E-25 2.1E-29 218.0 13.7 239 45-298 111-373 (1230)
35 PRK11634 ATP-dependent RNA hel 99.9 1.2E-24 2.6E-29 217.9 14.7 221 45-291 29-261 (629)
36 COG1204 Superfamily II helicas 99.9 6.9E-25 1.5E-29 222.2 12.7 208 68-292 46-270 (766)
37 PRK04537 ATP-dependent RNA hel 99.9 1.5E-24 3.3E-29 215.7 13.9 220 45-289 32-271 (572)
38 PRK11192 ATP-dependent RNA hel 99.9 2.5E-24 5.3E-29 208.3 13.9 171 45-230 24-205 (434)
39 PRK00254 ski2-like helicase; P 99.9 6E-24 1.3E-28 217.3 16.3 221 45-291 24-254 (720)
40 PRK13767 ATP-dependent helicas 99.9 5E-24 1.1E-28 221.0 13.7 182 31-227 22-229 (876)
41 PRK01297 ATP-dependent RNA hel 99.9 2.3E-23 5.1E-28 203.7 14.4 175 45-234 110-301 (475)
42 PTZ00424 helicase 45; Provisio 99.9 3.5E-23 7.6E-28 198.1 12.7 175 26-216 35-211 (401)
43 KOG0328|consensus 99.9 1E-23 2.2E-28 184.7 8.1 232 26-286 34-277 (400)
44 KOG0339|consensus 99.9 4E-23 8.7E-28 193.2 12.2 172 42-230 243-427 (731)
45 KOG0336|consensus 99.9 1.4E-23 3.1E-28 191.8 8.9 222 44-288 242-478 (629)
46 KOG0337|consensus 99.9 3.4E-23 7.4E-28 190.0 8.6 223 45-288 44-274 (529)
47 PRK09751 putative ATP-dependen 99.9 3.5E-22 7.6E-27 212.1 15.6 151 74-228 1-182 (1490)
48 COG1202 Superfamily II helicas 99.9 1.1E-21 2.5E-26 186.0 13.5 228 45-290 217-455 (830)
49 KOG0333|consensus 99.9 4.7E-22 1E-26 186.8 10.1 218 45-288 268-530 (673)
50 KOG0350|consensus 99.9 1.2E-21 2.5E-26 183.2 10.9 134 46-185 161-306 (620)
51 COG1205 Distinct helicase fami 99.9 2.4E-20 5.2E-25 191.6 19.1 167 55-228 71-256 (851)
52 KOG0334|consensus 99.8 8.9E-22 1.9E-26 197.9 7.7 242 44-309 387-646 (997)
53 KOG0347|consensus 99.8 1.2E-21 2.6E-26 184.9 7.8 177 26-216 188-386 (731)
54 KOG0951|consensus 99.8 6.3E-21 1.4E-25 193.1 13.3 233 68-307 324-579 (1674)
55 KOG0327|consensus 99.8 1.5E-21 3.2E-26 177.8 6.6 190 25-230 32-226 (397)
56 KOG4284|consensus 99.8 2E-21 4.3E-26 186.2 7.2 188 45-245 48-244 (980)
57 cd00268 DEADc DEAD-box helicas 99.8 2E-20 4.2E-25 162.6 12.5 157 45-216 22-184 (203)
58 KOG0332|consensus 99.8 1.9E-20 4.1E-25 169.8 11.7 236 25-288 96-343 (477)
59 KOG0341|consensus 99.8 4.3E-21 9.4E-26 174.7 6.4 222 45-286 193-432 (610)
60 PF00270 DEAD: DEAD/DEAH box h 99.8 3.1E-20 6.7E-25 156.2 10.2 154 46-217 1-163 (169)
61 KOG0329|consensus 99.8 4.8E-20 1E-24 159.8 9.7 207 22-246 40-264 (387)
62 TIGR00580 mfd transcription-re 99.8 6.6E-19 1.4E-23 182.2 19.2 210 44-288 451-673 (926)
63 PRK10917 ATP-dependent DNA hel 99.8 5.5E-19 1.2E-23 179.4 18.3 212 42-287 259-483 (681)
64 KOG0948|consensus 99.8 1.6E-19 3.5E-24 175.5 11.8 208 16-245 94-311 (1041)
65 TIGR02621 cas3_GSU0051 CRISPR- 99.8 2.5E-19 5.4E-24 181.4 12.9 180 32-226 5-227 (844)
66 PRK09401 reverse gyrase; Revie 99.8 5.7E-19 1.2E-23 186.6 15.8 122 44-185 80-212 (1176)
67 COG4581 Superfamily II RNA hel 99.8 4.2E-19 9.2E-24 181.4 14.2 175 61-247 126-307 (1041)
68 TIGR00643 recG ATP-dependent D 99.8 2.2E-18 4.8E-23 173.7 18.6 216 42-288 233-461 (630)
69 TIGR00614 recQ_fam ATP-depende 99.8 1.2E-18 2.6E-23 170.2 15.2 156 45-226 12-185 (470)
70 KOG0921|consensus 99.8 1.7E-19 3.8E-24 177.8 9.0 205 39-248 363-567 (1282)
71 PRK10689 transcription-repair 99.8 3.1E-18 6.7E-23 180.7 17.0 210 42-286 598-820 (1147)
72 TIGR03158 cas3_cyano CRISPR-as 99.8 3.6E-18 7.7E-23 161.2 15.4 154 49-219 2-194 (357)
73 TIGR01587 cas3_core CRISPR-ass 99.8 1.9E-18 4.1E-23 163.1 11.5 147 71-226 1-174 (358)
74 KOG0344|consensus 99.8 6.9E-19 1.5E-23 167.9 7.3 226 45-293 159-405 (593)
75 PRK05580 primosome assembly pr 99.7 1.8E-17 4E-22 167.9 12.9 224 43-288 143-379 (679)
76 PRK14701 reverse gyrase; Provi 99.7 4.3E-17 9.4E-22 176.1 16.4 125 44-186 79-212 (1638)
77 PRK11057 ATP-dependent DNA hel 99.7 2.5E-17 5.5E-22 165.4 13.3 163 45-233 26-205 (607)
78 TIGR01389 recQ ATP-dependent D 99.7 2.7E-17 5.9E-22 165.0 12.7 156 45-226 14-185 (591)
79 TIGR01054 rgy reverse gyrase. 99.7 7.1E-17 1.5E-21 171.0 12.3 124 44-185 78-210 (1171)
80 PLN03137 ATP-dependent DNA hel 99.7 1.3E-16 2.8E-21 164.6 11.5 157 45-227 461-640 (1195)
81 KOG0947|consensus 99.7 1.1E-16 2.5E-21 159.2 10.6 169 60-244 303-478 (1248)
82 TIGR00595 priA primosomal prot 99.7 1.4E-16 2.9E-21 156.4 8.2 196 73-288 1-211 (505)
83 COG1111 MPH1 ERCC4-like helica 99.6 6.7E-16 1.4E-20 145.7 9.9 153 70-228 30-186 (542)
84 smart00487 DEXDc DEAD-like hel 99.6 1.7E-14 3.7E-19 122.8 13.9 163 45-226 9-182 (201)
85 cd00046 DEXDc DEAD-like helica 99.6 2.9E-14 6.3E-19 114.5 13.7 138 70-216 1-144 (144)
86 KOG0354|consensus 99.6 7.8E-15 1.7E-19 145.4 11.6 156 60-227 68-234 (746)
87 PRK12899 secA preprotein trans 99.6 4.6E-15 9.9E-20 150.4 7.5 128 39-185 87-226 (970)
88 PHA02558 uvsW UvsW helicase; P 99.6 1.4E-14 3E-19 142.7 10.0 146 44-216 114-259 (501)
89 PRK13766 Hef nuclease; Provisi 99.5 5.4E-14 1.2E-18 145.5 11.7 144 71-224 31-182 (773)
90 PRK09694 helicase Cas3; Provis 99.5 3.3E-13 7.3E-18 138.9 15.1 147 68-219 300-483 (878)
91 PF07652 Flavi_DEAD: Flaviviru 99.5 7.9E-13 1.7E-17 106.9 12.7 133 69-216 4-136 (148)
92 KOG0951|consensus 99.5 1.9E-13 4.1E-18 139.7 11.0 220 47-292 1146-1376(1674)
93 COG4098 comFA Superfamily II D 99.4 1.1E-11 2.3E-16 112.4 15.5 167 45-238 98-266 (441)
94 PF04851 ResIII: Type III rest 99.4 1.2E-12 2.5E-17 111.0 8.3 154 46-216 5-182 (184)
95 KOG0950|consensus 99.4 6E-12 1.3E-16 126.5 13.8 216 67-292 238-477 (1008)
96 COG1198 PriA Primosomal protei 99.3 6.9E-12 1.5E-16 126.1 11.3 224 46-288 200-433 (730)
97 TIGR00963 secA preprotein tran 99.3 1.4E-12 3E-17 130.8 6.2 130 36-186 48-188 (745)
98 COG1200 RecG RecG-like helicas 99.3 3.4E-11 7.5E-16 118.3 14.7 181 44-247 262-456 (677)
99 PRK09200 preprotein translocas 99.3 4.5E-12 9.8E-17 128.8 6.9 122 43-185 77-210 (790)
100 PRK12898 secA preprotein trans 99.3 5.3E-12 1.1E-16 125.8 6.7 126 39-185 98-253 (656)
101 COG1061 SSL2 DNA or RNA helica 99.3 3.6E-11 7.8E-16 116.6 11.8 148 42-216 34-183 (442)
102 TIGR03714 secA2 accessory Sec 99.3 1.1E-11 2.3E-16 125.1 7.8 105 72-185 86-206 (762)
103 TIGR00603 rad25 DNA repair hel 99.2 1.8E-10 3.9E-15 116.2 16.2 128 70-216 274-411 (732)
104 PRK13104 secA preprotein trans 99.2 2.2E-11 4.8E-16 124.0 9.5 107 70-185 96-213 (896)
105 KOG0949|consensus 99.2 8E-11 1.7E-15 118.4 12.4 179 60-245 517-709 (1330)
106 COG1197 Mfd Transcription-repa 99.2 3.2E-10 6.9E-15 117.3 16.0 183 42-247 592-787 (1139)
107 PRK11448 hsdR type I restricti 99.2 1.5E-10 3.3E-15 122.6 11.8 167 45-226 414-603 (1123)
108 KOG0952|consensus 99.2 1.5E-11 3.3E-16 124.4 4.0 209 69-288 943-1166(1230)
109 COG1203 CRISPR-associated heli 99.1 1E-09 2.2E-14 112.7 14.1 165 61-228 205-395 (733)
110 KOG0349|consensus 99.1 6.9E-11 1.5E-15 109.9 4.3 120 104-223 288-420 (725)
111 TIGR00348 hsdR type I site-spe 99.1 9.1E-10 2E-14 111.9 11.2 135 69-216 263-402 (667)
112 KOG0352|consensus 99.0 1.5E-09 3.2E-14 101.0 9.0 221 47-289 23-269 (641)
113 COG0514 RecQ Superfamily II DN 98.9 2.5E-09 5.4E-14 105.1 7.8 154 47-226 20-189 (590)
114 PRK12904 preprotein translocas 98.9 1.9E-09 4E-14 109.9 6.8 103 73-185 98-212 (830)
115 TIGR03117 cas_csf4 CRISPR-asso 98.9 1E-08 2.3E-13 102.5 11.6 57 66-125 13-69 (636)
116 PRK14873 primosome assembly pr 98.8 7.1E-09 1.5E-13 104.7 7.1 134 72-223 163-310 (665)
117 PRK13107 preprotein translocas 98.8 1E-08 2.2E-13 104.7 7.7 108 69-185 95-213 (908)
118 COG1110 Reverse gyrase [DNA re 98.7 3.3E-07 7.2E-12 93.6 16.2 111 68-185 96-214 (1187)
119 TIGR01407 dinG_rel DnaQ family 98.7 7.6E-08 1.7E-12 100.7 10.8 65 45-120 246-310 (850)
120 PRK07246 bifunctional ATP-depe 98.7 1E-07 2.2E-12 99.0 10.4 48 66-119 261-308 (820)
121 COG4096 HsdR Type I site-speci 98.7 1.4E-07 3E-12 94.6 10.5 131 68-216 184-320 (875)
122 PF00176 SNF2_N: SNF2 family N 98.6 4.8E-07 1E-11 82.7 11.5 145 67-223 23-182 (299)
123 KOG0351|consensus 98.6 6.2E-08 1.3E-12 100.5 5.9 211 47-289 267-499 (941)
124 KOG0353|consensus 98.4 5.3E-07 1.2E-11 83.1 6.7 149 46-216 96-260 (695)
125 PF02399 Herpes_ori_bp: Origin 98.4 3E-06 6.6E-11 85.7 12.2 151 66-230 46-207 (824)
126 PRK04914 ATP-dependent helicas 98.3 2.3E-06 5E-11 89.6 10.2 142 69-216 169-315 (956)
127 PRK08074 bifunctional ATP-depe 98.3 3.7E-06 8E-11 88.8 11.4 50 67-120 274-323 (928)
128 PRK12723 flagellar biosynthesi 98.3 1.5E-05 3.2E-10 75.9 12.8 130 69-225 174-306 (388)
129 PRK13103 secA preprotein trans 98.2 2E-06 4.4E-11 88.2 7.0 104 73-185 99-213 (913)
130 PRK12906 secA preprotein trans 98.1 2.6E-06 5.7E-11 86.9 4.6 100 77-185 101-211 (796)
131 PF13245 AAA_19: Part of AAA d 98.1 9.3E-06 2E-10 59.2 6.3 54 68-122 9-62 (76)
132 PF00448 SRP54: SRP54-type pro 98.1 1.7E-05 3.6E-10 68.7 8.6 126 70-220 2-129 (196)
133 PRK11889 flhF flagellar biosyn 98.1 4.3E-05 9.3E-10 72.3 11.8 132 69-226 241-375 (436)
134 COG1419 FlhF Flagellar GTP-bin 98.1 0.00035 7.7E-09 66.0 17.5 130 69-226 203-333 (407)
135 TIGR02562 cas3_yersinia CRISPR 98.0 2.7E-05 5.8E-10 81.0 10.1 66 152-219 563-637 (1110)
136 PRK12326 preprotein translocas 98.0 7.8E-06 1.7E-10 82.2 5.9 101 76-185 98-209 (764)
137 KOG0921|consensus 98.0 2.6E-06 5.7E-11 85.9 1.9 182 52-244 404-585 (1282)
138 PRK14722 flhF flagellar biosyn 97.9 0.00015 3.4E-09 68.5 12.4 125 67-219 135-260 (374)
139 PRK15483 type III restriction- 97.9 0.00012 2.7E-09 76.1 12.1 137 70-216 60-238 (986)
140 PF13401 AAA_22: AAA domain; P 97.9 3E-05 6.5E-10 61.9 5.9 115 68-213 3-123 (131)
141 PF13604 AAA_30: AAA domain; P 97.9 3.4E-05 7.5E-10 66.7 6.7 61 48-121 5-65 (196)
142 PRK12726 flagellar biosynthesi 97.9 9.3E-05 2E-09 69.8 9.8 132 67-225 204-336 (407)
143 TIGR01447 recD exodeoxyribonuc 97.8 0.00012 2.6E-09 73.5 10.7 137 60-215 151-295 (586)
144 PLN03142 Probable chromatin-re 97.8 0.00021 4.6E-09 75.5 12.8 137 67-216 186-329 (1033)
145 CHL00122 secA preprotein trans 97.8 2.7E-05 5.9E-10 79.7 5.7 107 70-185 90-207 (870)
146 PRK10875 recD exonuclease V su 97.8 0.00023 5E-09 71.7 11.5 136 60-214 158-300 (615)
147 smart00488 DEXDc2 DEAD-like he 97.8 5.2E-05 1.1E-09 69.6 6.3 61 65-125 23-84 (289)
148 smart00489 DEXDc3 DEAD-like he 97.8 5.2E-05 1.1E-09 69.6 6.3 61 65-125 23-84 (289)
149 PRK05703 flhF flagellar biosyn 97.8 0.0005 1.1E-08 66.5 13.2 128 69-223 221-349 (424)
150 PRK12902 secA preprotein trans 97.7 0.00015 3.2E-09 74.5 8.4 107 70-185 99-216 (939)
151 PF09848 DUF2075: Uncharacteri 97.6 8.3E-05 1.8E-09 70.2 5.6 92 70-185 2-94 (352)
152 COG4889 Predicted helicase [Ge 97.6 0.0004 8.6E-09 70.7 10.3 132 41-185 158-315 (1518)
153 COG0610 Type I site-specific r 97.5 0.00033 7E-09 74.2 9.1 138 68-216 272-413 (962)
154 PRK14974 cell division protein 97.5 0.00081 1.7E-08 63.0 10.8 133 69-225 140-275 (336)
155 PRK10536 hypothetical protein; 97.5 0.00047 1E-08 61.8 8.3 46 65-113 70-115 (262)
156 PRK06731 flhF flagellar biosyn 97.5 0.0015 3.2E-08 59.4 11.5 133 68-226 74-209 (270)
157 PRK14723 flhF flagellar biosyn 97.4 0.0014 3.1E-08 67.1 12.1 125 69-221 185-310 (767)
158 KOG0989|consensus 97.4 0.00032 7E-09 63.7 6.6 155 19-216 13-169 (346)
159 KOG0390|consensus 97.4 0.0013 2.9E-08 67.0 11.6 165 47-225 241-423 (776)
160 PF02562 PhoH: PhoH-like prote 97.4 0.00035 7.6E-09 60.7 6.5 44 68-114 18-61 (205)
161 PF12340 DUF3638: Protein of u 97.4 0.00069 1.5E-08 59.6 7.9 92 66-166 38-145 (229)
162 PRK12724 flagellar biosynthesi 97.4 0.0021 4.5E-08 61.6 11.8 129 69-226 223-357 (432)
163 cd00009 AAA The AAA+ (ATPases 97.4 0.0013 2.9E-08 52.4 9.2 20 68-87 18-37 (151)
164 PRK04296 thymidine kinase; Pro 97.4 0.0014 3E-08 56.4 9.5 36 70-110 3-38 (190)
165 PF07517 SecA_DEAD: SecA DEAD- 97.4 6.9E-05 1.5E-09 67.7 1.4 104 73-185 94-208 (266)
166 PRK06526 transposase; Provisio 97.3 0.00051 1.1E-08 61.9 6.7 23 67-89 96-118 (254)
167 KOG4150|consensus 97.3 0.00046 1E-08 67.2 6.4 225 59-288 291-538 (1034)
168 PF13872 AAA_34: P-loop contai 97.3 0.0027 5.9E-08 58.0 11.1 167 47-222 40-228 (303)
169 PRK14721 flhF flagellar biosyn 97.3 0.0034 7.3E-08 60.5 12.2 132 67-226 189-324 (420)
170 PRK08181 transposase; Validate 97.3 0.002 4.2E-08 58.6 9.7 21 67-87 104-124 (269)
171 KOG1803|consensus 97.3 0.0005 1.1E-08 67.5 6.0 49 70-123 202-250 (649)
172 PRK12727 flagellar biosynthesi 97.2 0.015 3.2E-07 57.4 15.9 207 67-318 348-556 (559)
173 PRK07764 DNA polymerase III su 97.2 0.00068 1.5E-08 70.6 7.1 43 169-213 115-157 (824)
174 PF00580 UvrD-helicase: UvrD/R 97.2 0.00071 1.5E-08 62.0 6.5 60 68-128 12-71 (315)
175 KOG1123|consensus 97.2 0.00082 1.8E-08 64.6 6.8 124 70-216 321-458 (776)
176 TIGR01448 recD_rel helicase, p 97.2 0.002 4.3E-08 66.5 10.2 56 61-119 330-385 (720)
177 PRK11747 dinG ATP-dependent DN 97.2 0.00087 1.9E-08 68.9 7.4 48 69-120 49-96 (697)
178 PRK14952 DNA polymerase III su 97.2 0.0013 2.8E-08 66.0 8.0 48 164-213 108-155 (584)
179 PRK13889 conjugal transfer rel 97.1 0.0022 4.8E-08 67.8 9.5 123 45-215 347-470 (988)
180 PF13086 AAA_11: AAA domain; P 97.1 0.00061 1.3E-08 59.5 4.5 54 71-124 19-75 (236)
181 PF05729 NACHT: NACHT domain 97.1 0.0028 6.1E-08 52.2 8.1 52 177-228 84-142 (166)
182 PRK07003 DNA polymerase III su 97.1 0.0026 5.6E-08 65.0 9.0 42 169-212 114-155 (830)
183 PRK06995 flhF flagellar biosyn 97.0 0.01 2.3E-07 58.1 12.4 131 68-226 255-389 (484)
184 PRK14958 DNA polymerase III su 97.0 0.0013 2.9E-08 65.0 6.2 42 169-212 114-155 (509)
185 PRK14956 DNA polymerase III su 97.0 0.0012 2.5E-08 64.4 5.4 44 172-219 119-162 (484)
186 PRK00771 signal recognition pa 96.9 0.0091 2E-07 57.9 11.4 55 69-126 95-149 (437)
187 PRK08727 hypothetical protein; 96.9 0.0049 1.1E-07 54.8 8.5 19 69-87 41-59 (233)
188 PF06862 DUF1253: Protein of u 96.9 0.08 1.7E-06 51.3 17.2 69 151-219 131-228 (442)
189 smart00382 AAA ATPases associa 96.9 0.0014 3.1E-08 51.7 4.6 21 69-89 2-22 (148)
190 PRK14964 DNA polymerase III su 96.9 0.0017 3.6E-08 63.8 5.8 47 164-212 106-152 (491)
191 KOG0387|consensus 96.9 0.011 2.4E-07 59.9 11.5 137 70-216 225-375 (923)
192 TIGR03499 FlhF flagellar biosy 96.9 0.0048 1E-07 56.5 8.5 89 68-183 193-281 (282)
193 PRK14962 DNA polymerase III su 96.9 0.0034 7.4E-08 61.6 7.9 53 34-89 4-56 (472)
194 PF05970 PIF1: PIF1-like helic 96.9 0.0052 1.1E-07 58.3 8.9 69 49-126 6-76 (364)
195 PRK08691 DNA polymerase III su 96.9 0.002 4.3E-08 65.4 6.2 43 169-213 114-156 (709)
196 PRK12323 DNA polymerase III su 96.8 0.0021 4.7E-08 64.6 6.2 43 169-213 119-161 (700)
197 COG1199 DinG Rad3-related DNA 96.8 0.0017 3.6E-08 66.5 5.7 67 46-122 17-83 (654)
198 PRK14949 DNA polymerase III su 96.8 0.0052 1.1E-07 63.9 8.9 48 170-221 115-162 (944)
199 PRK14961 DNA polymerase III su 96.8 0.0026 5.6E-08 60.4 6.3 48 163-212 108-155 (363)
200 TIGR00064 ftsY signal recognit 96.8 0.011 2.4E-07 53.8 10.2 124 68-216 71-202 (272)
201 PRK10867 signal recognition pa 96.8 0.013 2.8E-07 56.8 11.0 57 69-127 100-156 (433)
202 PRK09112 DNA polymerase III su 96.8 0.0058 1.3E-07 57.7 8.4 50 163-214 130-179 (351)
203 TIGR01425 SRP54_euk signal rec 96.8 0.011 2.5E-07 56.9 10.4 53 70-125 101-153 (429)
204 PRK12900 secA preprotein trans 96.8 0.0027 5.8E-08 66.2 6.4 100 77-185 159-269 (1025)
205 PRK14951 DNA polymerase III su 96.7 0.0049 1.1E-07 62.2 7.9 48 163-212 113-160 (618)
206 KOG0385|consensus 96.7 0.013 2.9E-07 59.1 10.5 137 68-216 185-327 (971)
207 KOG4439|consensus 96.7 0.0029 6.2E-08 63.2 5.7 159 41-216 322-501 (901)
208 PLN03025 replication factor C 96.7 0.014 3.1E-07 54.3 10.1 22 67-88 32-53 (319)
209 TIGR02768 TraA_Ti Ti-type conj 96.6 0.015 3.2E-07 60.4 11.0 106 69-213 368-474 (744)
210 PRK06645 DNA polymerase III su 96.6 0.0079 1.7E-07 59.4 8.5 43 163-207 117-159 (507)
211 PF01695 IstB_IS21: IstB-like 96.6 0.0035 7.5E-08 53.4 5.3 46 66-117 44-89 (178)
212 PRK14960 DNA polymerase III su 96.6 0.0035 7.6E-08 63.2 5.8 42 169-212 113-154 (702)
213 PRK09111 DNA polymerase III su 96.6 0.016 3.4E-07 58.5 10.4 50 162-213 120-169 (598)
214 PRK07994 DNA polymerase III su 96.6 0.0081 1.8E-07 60.9 8.1 50 168-221 113-162 (647)
215 TIGR00959 ffh signal recogniti 96.6 0.019 4.1E-07 55.6 10.4 56 70-127 100-155 (428)
216 PRK06835 DNA replication prote 96.5 0.0082 1.8E-07 56.1 7.6 45 68-118 182-226 (329)
217 PRK14957 DNA polymerase III su 96.5 0.0044 9.5E-08 61.7 6.0 49 162-212 107-155 (546)
218 PRK07471 DNA polymerase III su 96.5 0.018 3.8E-07 54.7 9.7 62 153-216 120-181 (365)
219 PRK10416 signal recognition pa 96.5 0.032 6.9E-07 52.0 11.2 124 68-216 113-244 (318)
220 KOG0389|consensus 96.5 0.0072 1.6E-07 61.1 7.0 141 72-223 421-572 (941)
221 PRK14963 DNA polymerase III su 96.5 0.005 1.1E-07 60.9 5.9 44 166-211 108-151 (504)
222 PRK05642 DNA replication initi 96.5 0.018 4E-07 51.1 9.0 17 70-86 46-62 (234)
223 TIGR00604 rad3 DNA repair heli 96.5 0.0062 1.3E-07 62.9 6.8 62 61-124 21-82 (705)
224 PRK05896 DNA polymerase III su 96.5 0.011 2.4E-07 59.3 8.2 49 163-213 108-156 (605)
225 PHA03333 putative ATPase subun 96.4 0.1 2.2E-06 53.0 14.6 144 70-227 188-343 (752)
226 TIGR00376 DNA helicase, putati 96.4 0.0062 1.3E-07 62.0 6.3 50 70-124 174-223 (637)
227 PRK08451 DNA polymerase III su 96.4 0.014 3.1E-07 57.9 8.6 43 169-213 112-154 (535)
228 PF13177 DNA_pol3_delta2: DNA 96.4 0.018 3.9E-07 48.1 8.0 51 164-216 92-142 (162)
229 COG2256 MGS1 ATPase related to 96.4 0.008 1.7E-07 56.7 6.3 19 70-88 49-67 (436)
230 PRK06893 DNA replication initi 96.4 0.018 4E-07 50.9 8.4 48 173-222 90-140 (229)
231 TIGR03420 DnaA_homol_Hda DnaA 96.4 0.02 4.4E-07 50.1 8.7 23 66-88 35-57 (226)
232 PRK14950 DNA polymerase III su 96.4 0.015 3.2E-07 58.8 8.7 46 164-211 110-155 (585)
233 PRK14969 DNA polymerase III su 96.4 0.0071 1.5E-07 60.2 6.3 48 164-213 109-156 (527)
234 TIGR01547 phage_term_2 phage t 96.4 0.027 5.9E-07 54.0 10.2 133 71-216 3-140 (396)
235 PRK08903 DnaA regulatory inact 96.3 0.022 4.9E-07 50.1 8.9 21 67-87 40-60 (227)
236 PF05127 Helicase_RecD: Helica 96.3 0.00058 1.3E-08 57.9 -1.4 124 73-219 1-127 (177)
237 PRK05563 DNA polymerase III su 96.3 0.016 3.5E-07 58.1 8.5 46 163-210 108-153 (559)
238 PRK08084 DNA replication initi 96.3 0.021 4.4E-07 50.8 8.4 22 66-87 42-63 (235)
239 TIGR02881 spore_V_K stage V sp 96.3 0.021 4.5E-07 51.5 8.5 22 67-88 40-61 (261)
240 PRK14965 DNA polymerase III su 96.3 0.015 3.2E-07 58.6 8.3 49 163-213 108-156 (576)
241 PRK07952 DNA replication prote 96.3 0.044 9.6E-07 49.0 10.3 26 70-96 100-125 (244)
242 TIGR00678 holB DNA polymerase 96.3 0.017 3.6E-07 49.4 7.4 48 163-212 85-132 (188)
243 PRK12903 secA preprotein trans 96.2 0.0057 1.2E-07 63.1 5.0 103 74-185 96-209 (925)
244 PRK08116 hypothetical protein; 96.2 0.038 8.1E-07 50.2 9.9 28 69-97 114-141 (268)
245 PRK09183 transposase/IS protei 96.2 0.039 8.5E-07 49.8 9.9 24 66-89 99-122 (259)
246 PTZ00112 origin recognition co 96.2 0.047 1E-06 56.8 11.2 25 70-95 782-806 (1164)
247 PRK14948 DNA polymerase III su 96.2 0.023 5E-07 57.6 9.1 47 163-211 110-156 (620)
248 PRK14959 DNA polymerase III su 96.2 0.018 3.9E-07 58.0 8.1 46 164-211 109-154 (624)
249 PRK13826 Dtr system oriT relax 96.1 0.049 1.1E-06 58.4 11.5 109 68-215 396-505 (1102)
250 PRK12901 secA preprotein trans 96.1 0.0058 1.3E-07 64.0 4.5 102 75-185 188-301 (1112)
251 PRK00149 dnaA chromosomal repl 96.1 0.038 8.2E-07 54.0 9.9 36 70-108 149-184 (450)
252 TIGR00362 DnaA chromosomal rep 96.1 0.043 9.3E-07 52.8 10.1 37 70-109 137-173 (405)
253 KOG1002|consensus 96.1 0.05 1.1E-06 52.7 10.0 125 72-216 207-354 (791)
254 COG0556 UvrB Helicase subunit 96.1 0.016 3.6E-07 56.4 6.9 70 45-127 13-82 (663)
255 COG0470 HolB ATPase involved i 96.1 0.03 6.4E-07 51.7 8.6 43 170-214 105-147 (325)
256 cd01120 RecA-like_NTPases RecA 96.0 0.025 5.4E-07 46.1 7.1 21 72-92 2-22 (165)
257 TIGR03015 pepcterm_ATPase puta 96.0 0.02 4.3E-07 51.5 7.0 20 69-88 43-62 (269)
258 PRK12402 replication factor C 96.0 0.042 9.1E-07 51.1 9.4 20 70-89 37-56 (337)
259 COG1484 DnaC DNA replication p 96.0 0.082 1.8E-06 47.6 10.7 52 65-122 101-152 (254)
260 PF00308 Bac_DnaA: Bacterial d 96.0 0.12 2.6E-06 45.4 11.6 36 70-108 35-70 (219)
261 KOG1000|consensus 95.9 0.1 2.3E-06 50.5 11.4 133 65-216 210-348 (689)
262 PF03354 Terminase_1: Phage Te 95.9 0.042 9E-07 54.2 9.2 135 71-214 24-161 (477)
263 PRK14955 DNA polymerase III su 95.9 0.029 6.4E-07 53.9 7.8 47 164-212 117-163 (397)
264 PRK00440 rfc replication facto 95.8 0.081 1.8E-06 48.7 10.2 19 70-88 39-57 (319)
265 KOG0991|consensus 95.8 0.026 5.7E-07 49.8 6.2 26 62-87 41-66 (333)
266 COG0552 FtsY Signal recognitio 95.8 0.17 3.7E-06 46.9 11.9 134 69-226 139-281 (340)
267 PRK12377 putative replication 95.8 0.083 1.8E-06 47.4 9.7 27 69-96 101-127 (248)
268 COG0541 Ffh Signal recognition 95.8 0.098 2.1E-06 50.1 10.5 135 69-226 100-236 (451)
269 COG3973 Superfamily I DNA and 95.8 0.026 5.6E-07 55.9 6.8 66 60-125 217-283 (747)
270 PRK04195 replication factor C 95.7 0.069 1.5E-06 52.7 9.9 19 69-87 39-57 (482)
271 PRK14970 DNA polymerase III su 95.7 0.028 6.2E-07 53.2 6.8 39 47-88 20-58 (367)
272 COG1444 Predicted P-loop ATPas 95.7 0.041 9E-07 56.3 8.1 125 70-219 232-360 (758)
273 PHA03368 DNA packaging termina 95.6 0.12 2.7E-06 52.1 11.1 140 70-226 255-400 (738)
274 PRK14088 dnaA chromosomal repl 95.6 0.17 3.7E-06 49.3 12.0 38 70-110 131-168 (440)
275 PRK14087 dnaA chromosomal repl 95.5 0.11 2.4E-06 50.8 10.3 46 70-119 142-187 (450)
276 PRK06921 hypothetical protein; 95.5 0.079 1.7E-06 48.1 8.8 28 68-96 116-143 (266)
277 PRK07133 DNA polymerase III su 95.5 0.033 7.2E-07 57.1 6.8 50 161-212 105-154 (725)
278 KOG1802|consensus 95.5 0.031 6.7E-07 55.8 6.3 56 66-125 422-477 (935)
279 PRK00411 cdc6 cell division co 95.5 0.066 1.4E-06 51.1 8.7 26 68-94 54-79 (394)
280 CHL00181 cbbX CbbX; Provisiona 95.4 0.13 2.8E-06 47.2 10.0 22 68-89 58-79 (287)
281 TIGR02928 orc1/cdc6 family rep 95.4 0.17 3.7E-06 47.7 11.1 27 67-94 38-64 (365)
282 TIGR03345 VI_ClpV1 type VI sec 95.4 0.08 1.7E-06 55.8 9.5 41 47-87 569-614 (852)
283 PF03237 Terminase_6: Terminas 95.4 0.33 7.1E-06 45.2 12.9 131 73-216 1-137 (384)
284 PRK13342 recombination factor 95.4 0.09 1.9E-06 50.8 9.1 20 69-88 36-55 (413)
285 PRK08939 primosomal protein Dn 95.4 0.18 3.8E-06 46.8 10.6 27 68-95 155-181 (306)
286 TIGR02880 cbbX_cfxQ probable R 95.3 0.1 2.2E-06 47.8 8.9 19 69-87 58-76 (284)
287 PRK13851 type IV secretion sys 95.3 0.008 1.7E-07 56.5 1.5 44 66-115 159-202 (344)
288 COG1618 Predicted nucleotide k 95.2 0.1 2.3E-06 43.4 7.7 111 71-203 7-129 (179)
289 PRK13833 conjugal transfer pro 95.2 0.013 2.8E-07 54.6 2.8 46 66-114 141-186 (323)
290 PRK05707 DNA polymerase III su 95.2 0.079 1.7E-06 49.6 7.9 51 162-214 94-144 (328)
291 PRK10919 ATP-dependent DNA hel 95.2 0.033 7.1E-07 57.3 5.8 58 69-127 15-72 (672)
292 COG3587 Restriction endonuclea 95.2 0.094 2E-06 53.9 8.7 45 70-117 75-119 (985)
293 TIGR02760 TraI_TIGR conjugativ 95.2 0.074 1.6E-06 60.7 9.0 122 68-215 445-566 (1960)
294 PF00437 T2SE: Type II/IV secr 95.2 0.013 2.8E-07 53.1 2.5 43 67-114 125-167 (270)
295 PRK14953 DNA polymerase III su 95.2 0.035 7.5E-07 54.8 5.6 48 162-211 107-154 (486)
296 cd03115 SRP The signal recogni 95.2 0.22 4.7E-06 41.7 9.8 20 71-90 2-21 (173)
297 KOG0384|consensus 95.1 0.1 2.2E-06 55.5 9.0 143 68-223 388-545 (1373)
298 PRK13900 type IV secretion sys 95.1 0.011 2.4E-07 55.4 1.9 44 66-115 157-200 (332)
299 TIGR02397 dnaX_nterm DNA polym 95.1 0.095 2.1E-06 49.2 8.2 49 162-212 105-153 (355)
300 PRK08533 flagellar accessory p 95.1 0.057 1.2E-06 47.8 6.2 28 66-93 21-48 (230)
301 PF05496 RuvB_N: Holliday junc 95.0 0.11 2.4E-06 45.7 7.8 17 70-86 51-67 (233)
302 PRK14086 dnaA chromosomal repl 95.0 0.15 3.3E-06 51.4 9.7 35 71-108 316-350 (617)
303 COG2812 DnaX DNA polymerase II 95.0 0.027 5.8E-07 55.5 4.3 53 162-218 107-159 (515)
304 PHA02544 44 clamp loader, smal 95.0 0.13 2.9E-06 47.4 8.9 18 70-87 44-61 (316)
305 TIGR02782 TrbB_P P-type conjug 95.0 0.025 5.4E-07 52.2 3.9 46 66-114 129-174 (299)
306 PRK12422 chromosomal replicati 94.9 0.12 2.5E-06 50.5 8.2 35 70-109 142-176 (445)
307 PF05621 TniB: Bacterial TniB 94.8 0.063 1.4E-06 49.2 5.8 125 55-202 45-177 (302)
308 PRK07940 DNA polymerase III su 94.8 0.15 3.3E-06 48.9 8.7 49 163-213 106-154 (394)
309 COG1875 NYN ribonuclease and A 94.8 0.057 1.2E-06 50.6 5.4 45 69-115 245-289 (436)
310 KOG0780|consensus 94.8 0.2 4.4E-06 47.3 9.0 133 70-225 102-236 (483)
311 PF14617 CMS1: U3-containing 9 94.7 0.04 8.7E-07 49.4 4.3 81 102-185 126-212 (252)
312 PRK06871 DNA polymerase III su 94.7 0.2 4.3E-06 46.8 9.1 51 162-214 95-145 (325)
313 PRK06647 DNA polymerase III su 94.7 0.27 5.9E-06 49.4 10.6 43 167-211 112-154 (563)
314 PRK13341 recombination factor 94.7 0.2 4.3E-06 51.9 9.8 21 68-88 51-71 (725)
315 COG3421 Uncharacterized protei 94.7 0.28 6E-06 48.8 10.1 136 77-216 5-165 (812)
316 COG1435 Tdk Thymidine kinase [ 94.6 0.29 6.4E-06 42.0 9.1 89 70-185 5-93 (201)
317 KOG0953|consensus 94.6 0.049 1.1E-06 53.4 4.8 94 71-185 193-286 (700)
318 TIGR03877 thermo_KaiC_1 KaiC d 94.6 0.044 9.5E-07 48.7 4.3 54 65-124 17-70 (237)
319 KOG2028|consensus 94.6 0.074 1.6E-06 49.9 5.8 52 176-234 224-279 (554)
320 PRK14971 DNA polymerase III su 94.6 0.058 1.3E-06 54.7 5.7 44 166-211 113-156 (614)
321 PF12846 AAA_10: AAA-like doma 94.5 0.04 8.7E-07 50.0 4.0 43 69-116 1-43 (304)
322 PRK08769 DNA polymerase III su 94.5 0.25 5.5E-06 46.0 9.3 52 161-214 100-151 (319)
323 KOG0392|consensus 94.5 0.19 4.1E-06 53.6 9.0 140 71-221 996-1146(1549)
324 PRK11773 uvrD DNA-dependent he 94.5 0.065 1.4E-06 55.6 5.9 58 69-127 22-79 (721)
325 PRK14712 conjugal transfer nic 94.5 0.14 2.9E-06 57.0 8.3 49 68-119 851-901 (1623)
326 TIGR01074 rep ATP-dependent DN 94.4 0.072 1.6E-06 54.7 6.0 58 69-127 14-71 (664)
327 KOG1805|consensus 94.4 0.061 1.3E-06 55.9 5.1 50 71-125 687-736 (1100)
328 TIGR01075 uvrD DNA helicase II 94.4 0.066 1.4E-06 55.5 5.5 58 69-127 17-74 (715)
329 PRK04328 hypothetical protein; 94.3 0.13 2.9E-06 46.1 6.8 31 66-96 20-50 (249)
330 PRK13709 conjugal transfer nic 94.3 0.18 4E-06 56.6 9.0 49 69-118 984-1032(1747)
331 COG1474 CDC6 Cdc6-related prot 94.3 0.32 6.9E-06 46.2 9.5 27 70-97 43-69 (366)
332 PRK14954 DNA polymerase III su 94.3 0.29 6.3E-06 49.7 9.7 45 167-213 120-164 (620)
333 cd01124 KaiC KaiC is a circadi 94.2 0.055 1.2E-06 45.7 4.0 47 71-123 1-47 (187)
334 PRK11331 5-methylcytosine-spec 94.2 0.14 3E-06 49.7 7.0 27 61-87 186-212 (459)
335 PRK10263 DNA translocase FtsK; 94.1 0.44 9.6E-06 51.7 11.0 40 275-314 1227-1270(1355)
336 COG2805 PilT Tfp pilus assembl 94.1 0.051 1.1E-06 49.7 3.6 37 68-108 124-160 (353)
337 TIGR02868 CydC thiol reductant 94.1 0.15 3.2E-06 50.8 7.3 26 61-86 353-378 (529)
338 TIGR02760 TraI_TIGR conjugativ 94.1 0.16 3.4E-06 58.2 8.2 48 68-119 1035-1085(1960)
339 cd01393 recA_like RecA is a b 94.1 0.092 2E-06 45.9 5.2 46 65-110 15-61 (226)
340 PRK07399 DNA polymerase III su 94.1 0.3 6.6E-06 45.4 8.8 58 154-214 104-161 (314)
341 TIGR02655 circ_KaiC circadian 94.0 0.079 1.7E-06 52.3 5.1 52 66-123 260-311 (484)
342 PF06745 KaiC: KaiC; InterPro 94.0 0.059 1.3E-06 47.4 3.8 34 65-98 15-49 (226)
343 CHL00095 clpC Clp protease ATP 94.0 0.18 3.8E-06 53.2 7.8 40 47-86 512-556 (821)
344 PRK13894 conjugal transfer ATP 93.9 0.041 8.8E-07 51.3 2.7 47 65-114 144-190 (319)
345 PF02534 T4SS-DNA_transf: Type 93.9 0.059 1.3E-06 52.8 3.9 48 70-124 45-92 (469)
346 PRK08058 DNA polymerase III su 93.9 0.31 6.6E-06 45.6 8.5 46 166-213 102-147 (329)
347 KOG2228|consensus 93.9 1.3 2.9E-05 41.3 12.2 129 68-218 48-183 (408)
348 cd01131 PilT Pilus retraction 93.9 0.06 1.3E-06 46.5 3.5 37 70-110 2-38 (198)
349 PRK06090 DNA polymerase III su 93.8 0.38 8.3E-06 44.8 9.0 52 162-215 96-147 (319)
350 PRK11054 helD DNA helicase IV; 93.8 0.14 3E-06 52.7 6.5 57 70-127 210-266 (684)
351 PF13555 AAA_29: P-loop contai 93.8 0.033 7.1E-07 38.7 1.4 19 68-86 22-40 (62)
352 PRK06305 DNA polymerase III su 93.7 0.21 4.5E-06 48.9 7.3 41 170-212 117-157 (451)
353 PRK10865 protein disaggregatio 93.7 0.76 1.7E-05 48.6 11.9 47 47-94 571-622 (857)
354 cd03247 ABCC_cytochrome_bd The 93.7 0.36 7.8E-06 40.7 7.9 23 64-86 23-45 (178)
355 TIGR01420 pilT_fam pilus retra 93.6 0.071 1.5E-06 50.2 3.7 42 68-113 121-162 (343)
356 COG1074 RecB ATP-dependent exo 93.6 0.15 3.3E-06 55.4 6.7 63 66-128 13-75 (1139)
357 PRK05973 replicative DNA helic 93.5 0.094 2E-06 46.7 4.1 59 60-124 55-113 (237)
358 TIGR02639 ClpA ATP-dependent C 93.4 0.44 9.6E-06 49.5 9.5 17 70-86 485-501 (731)
359 PF01443 Viral_helicase1: Vira 93.4 0.087 1.9E-06 46.2 3.7 17 72-88 1-17 (234)
360 PRK07993 DNA polymerase III su 93.2 0.49 1.1E-05 44.4 8.6 53 160-214 94-146 (334)
361 PRK11823 DNA repair protein Ra 92.9 0.17 3.7E-06 49.4 5.3 57 60-122 70-127 (446)
362 PRK06964 DNA polymerase III su 92.9 0.47 1E-05 44.6 8.0 54 160-215 118-171 (342)
363 COG1219 ClpX ATP-dependent pro 92.8 0.051 1.1E-06 50.0 1.4 17 70-86 98-114 (408)
364 TIGR03346 chaperone_ClpB ATP-d 92.8 0.61 1.3E-05 49.4 9.6 41 47-87 568-613 (852)
365 PRK10436 hypothetical protein; 92.7 0.1 2.2E-06 51.1 3.5 37 68-109 217-253 (462)
366 cd00267 ABC_ATPase ABC (ATP-bi 92.7 0.19 4.2E-06 41.3 4.7 21 66-86 22-42 (157)
367 COG4962 CpaF Flp pilus assembl 92.7 0.069 1.5E-06 49.7 2.1 39 70-114 174-212 (355)
368 PRK11034 clpA ATP-dependent Cl 92.7 0.49 1.1E-05 49.3 8.5 41 47-87 461-506 (758)
369 cd01130 VirB11-like_ATPase Typ 92.6 0.055 1.2E-06 46.2 1.4 21 66-86 22-42 (186)
370 TIGR02525 plasmid_TraJ plasmid 92.6 0.13 2.8E-06 48.9 4.0 43 68-113 148-190 (372)
371 TIGR01073 pcrA ATP-dependent D 92.6 0.19 4.1E-06 52.2 5.5 58 69-127 17-74 (726)
372 KOG0391|consensus 92.6 0.16 3.6E-06 53.9 4.9 136 67-216 632-775 (1958)
373 PRK05564 DNA polymerase III su 92.6 1 2.2E-05 41.7 9.8 44 168-213 87-130 (313)
374 COG0467 RAD55 RecA-superfamily 92.5 0.17 3.7E-06 45.6 4.4 54 65-124 19-72 (260)
375 TIGR02788 VirB11 P-type DNA tr 92.5 0.069 1.5E-06 49.5 1.9 21 66-86 141-161 (308)
376 COG2909 MalT ATP-dependent tra 92.5 0.094 2E-06 54.0 2.9 30 61-90 29-58 (894)
377 PRK13897 type IV secretion sys 92.5 0.18 3.9E-06 51.0 5.0 51 67-124 156-206 (606)
378 TIGR02524 dot_icm_DotB Dot/Icm 92.5 0.15 3.3E-06 48.3 4.2 28 67-95 132-159 (358)
379 cd01126 TraG_VirD4 The TraG/Tr 92.4 0.087 1.9E-06 50.3 2.5 46 71-123 1-46 (384)
380 PF13207 AAA_17: AAA domain; P 92.4 0.056 1.2E-06 42.3 1.0 17 72-88 2-18 (121)
381 KOG0920|consensus 92.4 0.026 5.6E-07 58.9 -1.2 54 252-305 316-369 (924)
382 COG0542 clpA ATP-binding subun 92.3 0.51 1.1E-05 48.8 7.9 117 47-198 494-615 (786)
383 PRK13764 ATPase; Provisional 92.3 0.14 3.1E-06 51.6 3.9 42 68-114 256-297 (602)
384 cd01121 Sms Sms (bacterial rad 92.2 0.45 9.7E-06 45.4 7.0 50 66-121 79-128 (372)
385 COG2804 PulE Type II secretory 92.2 0.067 1.4E-06 52.2 1.4 29 67-96 256-284 (500)
386 PTZ00293 thymidine kinase; Pro 92.2 0.28 6E-06 42.9 5.1 38 69-111 4-41 (211)
387 KOG0058|consensus 92.1 0.074 1.6E-06 53.8 1.7 36 60-97 485-520 (716)
388 TIGR03878 thermo_KaiC_2 KaiC d 92.1 0.13 2.9E-06 46.4 3.1 30 66-95 33-62 (259)
389 PRK04841 transcriptional regul 92.0 1.1 2.3E-05 47.6 10.4 27 64-90 27-53 (903)
390 TIGR02538 type_IV_pilB type IV 91.9 0.12 2.7E-06 51.9 3.0 26 68-94 315-340 (564)
391 cd00984 DnaB_C DnaB helicase C 91.9 0.21 4.6E-06 44.1 4.2 33 64-96 8-40 (242)
392 cd03228 ABCC_MRP_Like The MRP 91.9 0.56 1.2E-05 39.3 6.6 23 64-86 23-45 (171)
393 cd01127 TrwB Bacterial conjuga 91.8 0.13 2.8E-06 49.6 3.0 44 68-116 41-84 (410)
394 TIGR02237 recomb_radB DNA repa 91.8 0.2 4.2E-06 43.4 3.8 29 66-94 9-37 (209)
395 PRK13850 type IV secretion sys 91.7 0.19 4.1E-06 51.5 4.1 50 67-123 137-186 (670)
396 PF13238 AAA_18: AAA domain; P 91.6 0.081 1.8E-06 41.4 1.1 17 72-88 1-17 (129)
397 KOG1970|consensus 91.5 0.2 4.4E-06 49.3 3.9 59 30-88 68-129 (634)
398 PF13671 AAA_33: AAA domain; P 91.4 0.088 1.9E-06 42.3 1.1 16 72-87 2-17 (143)
399 TIGR00596 rad1 DNA repair prot 91.3 0.26 5.7E-06 51.5 4.7 63 151-216 7-72 (814)
400 COG2255 RuvB Holliday junction 91.2 0.51 1.1E-05 43.0 5.8 39 159-200 91-130 (332)
401 cd03246 ABCC_Protease_Secretio 91.2 0.4 8.8E-06 40.2 5.0 22 65-86 24-45 (173)
402 KOG2373|consensus 91.2 0.51 1.1E-05 44.1 5.9 113 62-185 266-385 (514)
403 TIGR00763 lon ATP-dependent pr 91.2 0.37 8E-06 50.5 5.7 19 68-86 346-364 (775)
404 COG0593 DnaA ATPase involved i 91.2 1 2.2E-05 43.3 8.2 37 69-108 113-149 (408)
405 COG1221 PspF Transcriptional r 91.1 1 2.2E-05 43.1 8.2 27 61-87 93-119 (403)
406 PF12775 AAA_7: P-loop contain 91.1 0.097 2.1E-06 47.7 1.2 21 68-88 32-52 (272)
407 PRK13880 conjugal transfer cou 91.1 0.23 4.9E-06 50.7 4.0 46 68-120 174-219 (636)
408 cd03229 ABC_Class3 This class 91.1 0.55 1.2E-05 39.6 5.7 22 65-86 22-43 (178)
409 COG1223 Predicted ATPase (AAA+ 91.1 1.5 3.2E-05 39.7 8.4 16 70-85 152-167 (368)
410 TIGR02640 gas_vesic_GvpN gas v 91.0 0.11 2.4E-06 46.9 1.6 29 60-88 12-40 (262)
411 PF07728 AAA_5: AAA domain (dy 91.0 0.093 2E-06 42.2 0.9 18 71-88 1-18 (139)
412 TIGR03881 KaiC_arch_4 KaiC dom 91.0 0.26 5.7E-06 43.2 3.8 30 65-94 16-45 (229)
413 PF00004 AAA: ATPase family as 90.9 0.11 2.4E-06 40.9 1.2 16 72-87 1-16 (132)
414 TIGR00631 uvrb excinuclease AB 90.9 0.45 9.7E-06 48.8 5.9 71 45-128 10-80 (655)
415 PF10412 TrwB_AAD_bind: Type I 90.9 0.3 6.4E-06 46.8 4.3 45 68-117 14-58 (386)
416 TIGR03743 SXT_TraD conjugative 90.8 0.41 8.8E-06 48.8 5.4 48 68-120 175-224 (634)
417 cd03239 ABC_SMC_head The struc 90.8 0.9 2E-05 38.5 6.8 16 71-86 24-39 (178)
418 TIGR03880 KaiC_arch_3 KaiC dom 90.7 0.33 7.2E-06 42.5 4.2 53 66-124 13-65 (224)
419 PHA02533 17 large terminase pr 90.7 1.9 4E-05 43.2 9.8 136 69-216 74-210 (534)
420 cd01129 PulE-GspE PulE/GspE Th 90.6 0.17 3.7E-06 45.8 2.4 41 68-113 79-119 (264)
421 COG3267 ExeA Type II secretory 90.6 0.75 1.6E-05 41.2 6.2 28 66-94 47-75 (269)
422 PRK05917 DNA polymerase III su 90.5 2.1 4.6E-05 39.2 9.4 53 162-216 83-135 (290)
423 TIGR02785 addA_Gpos recombinat 90.4 0.49 1.1E-05 52.1 6.0 124 68-198 13-139 (1232)
424 PF13481 AAA_25: AAA domain; P 90.3 0.53 1.1E-05 39.9 5.0 58 67-125 30-92 (193)
425 cd01394 radB RadB. The archaea 90.3 0.33 7.1E-06 42.3 3.8 30 65-94 15-44 (218)
426 PRK14729 miaA tRNA delta(2)-is 90.3 0.14 3.1E-06 47.1 1.5 19 69-87 4-22 (300)
427 PRK06067 flagellar accessory p 90.2 0.34 7.4E-06 42.8 3.9 31 65-95 21-51 (234)
428 KOG0741|consensus 90.1 2.1 4.6E-05 42.3 9.3 48 55-107 519-571 (744)
429 COG1126 GlnQ ABC-type polar am 90.0 0.16 3.6E-06 44.3 1.6 21 65-85 24-44 (240)
430 PRK13876 conjugal transfer cou 89.9 0.33 7.1E-06 49.7 3.9 48 67-121 142-189 (663)
431 COG4626 Phage terminase-like p 89.9 2.4 5.1E-05 42.1 9.6 135 71-216 88-225 (546)
432 KOG0060|consensus 89.9 0.14 3.1E-06 50.7 1.2 34 61-96 453-486 (659)
433 TIGR02767 TraG-Ti Ti-type conj 89.8 0.41 8.8E-06 48.7 4.4 47 68-121 210-256 (623)
434 PHA02244 ATPase-like protein 89.8 0.3 6.4E-06 46.3 3.2 28 60-87 110-137 (383)
435 COG0466 Lon ATP-dependent Lon 89.7 0.52 1.1E-05 47.9 5.0 30 154-185 399-428 (782)
436 COG0630 VirB11 Type IV secreto 89.7 0.21 4.4E-06 46.5 2.1 48 61-114 135-182 (312)
437 PRK08699 DNA polymerase III su 89.6 1.1 2.3E-05 42.0 6.8 51 161-213 100-150 (325)
438 TIGR01243 CDC48 AAA family ATP 89.5 0.69 1.5E-05 48.1 6.1 101 69-215 487-597 (733)
439 PRK10078 ribose 1,5-bisphospho 89.5 0.17 3.7E-06 43.0 1.3 20 69-88 2-21 (186)
440 PF09439 SRPRB: Signal recogni 89.5 0.19 4.2E-06 42.8 1.6 22 69-90 3-24 (181)
441 TIGR03819 heli_sec_ATPase heli 89.5 0.2 4.4E-06 47.1 1.9 42 67-114 176-217 (340)
442 PF05876 Terminase_GpA: Phage 89.3 0.33 7.1E-06 48.8 3.4 55 69-127 33-88 (557)
443 PRK09361 radB DNA repair and r 89.3 0.44 9.5E-06 41.7 3.8 29 66-94 20-48 (225)
444 KOG2035|consensus 89.2 1.4 3E-05 40.1 6.9 41 173-215 126-166 (351)
445 KOG0386|consensus 89.2 0.26 5.7E-06 51.5 2.6 155 49-216 391-554 (1157)
446 TIGR02012 tigrfam_recA protein 89.2 0.57 1.2E-05 43.6 4.6 42 65-111 51-92 (321)
447 TIGR02655 circ_KaiC circadian 89.2 0.76 1.7E-05 45.4 5.8 32 65-96 17-48 (484)
448 PRK13822 conjugal transfer cou 89.1 0.49 1.1E-05 48.3 4.5 48 68-122 223-270 (641)
449 cd00561 CobA_CobO_BtuR ATP:cor 88.9 0.9 2E-05 37.9 5.2 25 71-95 4-28 (159)
450 cd01122 GP4d_helicase GP4d_hel 88.9 0.45 9.8E-06 42.8 3.7 32 63-94 24-55 (271)
451 PF01580 FtsK_SpoIIIE: FtsK/Sp 88.9 0.41 8.8E-06 41.3 3.3 28 67-94 36-63 (205)
452 PRK13695 putative NTPase; Prov 88.8 2.1 4.5E-05 35.9 7.5 18 71-88 2-19 (174)
453 PRK00300 gmk guanylate kinase; 88.8 0.27 5.9E-06 42.3 2.1 19 68-86 4-22 (205)
454 TIGR02533 type_II_gspE general 88.8 0.21 4.6E-06 49.2 1.6 26 68-94 241-266 (486)
455 PRK07261 topology modulation p 88.8 0.21 4.5E-06 42.1 1.3 18 71-88 2-19 (171)
456 TIGR03263 guanyl_kin guanylate 88.7 0.26 5.6E-06 41.4 1.9 18 69-86 1-18 (180)
457 cd00071 GMPK Guanosine monopho 88.7 0.26 5.6E-06 39.9 1.8 15 72-86 2-16 (137)
458 PRK08118 topology modulation p 88.7 0.21 4.6E-06 41.9 1.3 16 71-86 3-18 (167)
459 TIGR02322 phosphon_PhnN phosph 88.5 0.22 4.8E-06 41.9 1.3 18 70-87 2-19 (179)
460 cd00227 CPT Chloramphenicol (C 88.4 0.24 5.2E-06 41.7 1.5 19 69-87 2-20 (175)
461 PLN02165 adenylate isopentenyl 88.4 0.23 5E-06 46.4 1.5 23 66-88 40-62 (334)
462 TIGR02784 addA_alphas double-s 88.4 0.94 2E-05 49.6 6.3 60 67-128 8-67 (1141)
463 COG2204 AtoC Response regulato 88.3 3.7 8.1E-05 40.2 9.7 52 54-107 148-200 (464)
464 PRK00131 aroK shikimate kinase 88.3 0.28 6.2E-06 40.6 1.8 20 68-87 3-22 (175)
465 PF07724 AAA_2: AAA domain (Cd 88.2 0.22 4.8E-06 42.0 1.1 17 70-86 4-20 (171)
466 COG1136 SalX ABC-type antimicr 88.2 0.24 5.1E-06 43.7 1.3 23 64-86 26-48 (226)
467 PF03215 Rad17: Rad17 cell cyc 88.2 0.35 7.5E-06 48.1 2.6 21 68-88 44-64 (519)
468 KOG0990|consensus 88.1 1.9 4.1E-05 39.9 7.1 38 174-213 131-168 (360)
469 TIGR03754 conj_TOL_TraD conjug 88.1 0.53 1.1E-05 47.8 3.8 41 68-113 179-219 (643)
470 TIGR00150 HI0065_YjeE ATPase, 88.0 0.39 8.5E-06 38.8 2.4 28 59-86 12-39 (133)
471 cd00544 CobU Adenosylcobinamid 88.0 0.48 1E-05 39.9 3.0 45 72-124 2-46 (169)
472 TIGR00235 udk uridine kinase. 87.5 0.26 5.5E-06 42.7 1.1 19 68-86 5-23 (207)
473 cd00820 PEPCK_HprK Phosphoenol 87.5 0.36 7.8E-06 37.4 1.8 23 66-88 12-34 (107)
474 cd00983 recA RecA is a bacter 87.5 0.84 1.8E-05 42.6 4.5 44 65-113 51-94 (325)
475 PF01078 Mg_chelatase: Magnesi 87.4 0.29 6.3E-06 42.5 1.4 22 65-86 18-39 (206)
476 PF13191 AAA_16: AAA ATPase do 87.4 0.4 8.6E-06 40.1 2.2 32 65-97 20-51 (185)
477 TIGR02902 spore_lonB ATP-depen 87.4 0.46 9.9E-06 47.5 2.9 51 34-88 55-105 (531)
478 PF00005 ABC_tran: ABC transpo 87.3 0.3 6.6E-06 38.9 1.4 21 66-86 8-28 (137)
479 cd02019 NK Nucleoside/nucleoti 87.2 0.33 7.1E-06 34.2 1.3 15 72-86 2-16 (69)
480 COG0653 SecA Preprotein transl 87.1 0.92 2E-05 47.1 4.9 105 72-185 96-211 (822)
481 PRK09354 recA recombinase A; P 87.0 0.92 2E-05 42.7 4.5 44 65-113 56-99 (349)
482 PRK10787 DNA-binding ATP-depen 86.9 0.99 2.2E-05 47.3 5.2 19 68-86 348-366 (784)
483 TIGR01313 therm_gnt_kin carboh 86.8 0.26 5.7E-06 40.7 0.8 15 72-86 1-15 (163)
484 COG3604 FhlA Transcriptional r 86.8 2.5 5.5E-05 41.4 7.4 38 47-86 226-263 (550)
485 PF10236 DAP3: Mitochondrial r 86.8 1.3 2.8E-05 41.1 5.4 30 64-93 18-47 (309)
486 TIGR02759 TraD_Ftype type IV c 86.7 0.69 1.5E-05 46.6 3.8 28 67-95 174-201 (566)
487 COG3972 Superfamily I DNA and 86.5 2.6 5.6E-05 41.3 7.3 51 73-126 180-230 (660)
488 PF02367 UPF0079: Uncharacteri 86.5 0.34 7.4E-06 38.6 1.2 34 59-93 5-38 (123)
489 PF13173 AAA_14: AAA domain 86.3 0.51 1.1E-05 37.5 2.2 22 68-89 1-22 (128)
490 COG2109 BtuR ATP:corrinoid ade 86.3 1.1 2.3E-05 38.4 4.1 35 70-109 29-63 (198)
491 PRK05541 adenylylsulfate kinas 86.2 0.41 8.8E-06 40.2 1.6 21 67-87 5-25 (176)
492 PRK00091 miaA tRNA delta(2)-is 86.2 0.36 7.8E-06 44.7 1.4 18 70-87 5-22 (307)
493 PRK09302 circadian clock prote 86.1 0.76 1.6E-05 45.7 3.7 36 61-96 22-58 (509)
494 PRK08233 hypothetical protein; 86.1 0.36 7.7E-06 40.5 1.2 18 70-87 4-21 (182)
495 KOG0745|consensus 86.1 0.4 8.7E-06 46.1 1.6 17 70-86 227-243 (564)
496 PRK14530 adenylate kinase; Pro 86.0 0.37 8.1E-06 42.0 1.4 19 70-88 4-22 (215)
497 PF10443 RNA12: RNA12 protein; 86.0 3.2 6.8E-05 40.1 7.6 54 175-228 149-206 (431)
498 PRK06762 hypothetical protein; 86.0 0.36 7.9E-06 40.0 1.2 17 71-87 4-20 (166)
499 KOG0726|consensus 86.0 0.86 1.9E-05 41.7 3.6 17 69-85 219-235 (440)
500 PHA00012 I assembly protein 85.9 2.5 5.3E-05 39.5 6.6 24 72-95 4-27 (361)
No 1
>KOG0922|consensus
Probab=100.00 E-value=2.1e-40 Score=318.27 Aligned_cols=254 Identities=35% Similarity=0.511 Sum_probs=219.8
Q ss_pred cccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHh
Q psy496 47 VTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQER 126 (319)
Q Consensus 47 ~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~ 126 (319)
-.|++.+|+....++++....+|++++|.|+||||||+..+..+.++.+... ++|.|++|+|.+|..+++++++++
T Consensus 44 ~~qR~~LPI~~~r~~il~~ve~nqvlIviGeTGsGKSTQipQyL~eaG~~~~----g~I~~TQPRRVAavslA~RVAeE~ 119 (674)
T KOG0922|consen 44 QEQRESLPIYKYRDQILYAVEDNQVLIVIGETGSGKSTQIPQYLAEAGFASS----GKIACTQPRRVAAVSLAKRVAEEM 119 (674)
T ss_pred HHhhccCCHHHHHHHHHHHHHHCCEEEEEcCCCCCccccHhHHHHhcccccC----CcEEeecCchHHHHHHHHHHHHHh
Confidence 5577889999999999999999999999999999999999999998877654 369999999999999999999999
Q ss_pred ccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccC
Q psy496 127 DEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKD 206 (319)
Q Consensus 127 ~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~ 206 (319)
+... |..|||.+++++.+.. +++|.++|.|.|++.+..+|.|+++++|||||||+|++++|+++++++.+...+++
T Consensus 120 ~~~l---G~~VGY~IRFed~ts~-~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~ 195 (674)
T KOG0922|consen 120 GCQL---GEEVGYTIRFEDSTSK-DTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPD 195 (674)
T ss_pred CCCc---CceeeeEEEecccCCC-ceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCC
Confidence 9988 9999999999998874 78999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEeccccChhhHhhhhCCCCEEEeCCccccceeeeehhhhhhhhhhHHHHHHHHhhhhhhhccccCCCcEEEeCCcc
Q psy496 207 LKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFT 286 (319)
Q Consensus 207 ~qiv~lSAT~~~~~l~~~l~~~~~i~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~ 286 (319)
+++|++|||+|.+.+.+||.+++++.++||.|||+++|+..+ ..++-.......+++ -.....|++|||++|+.
T Consensus 196 LklIimSATlda~kfS~yF~~a~i~~i~GR~fPVei~y~~~p----~~dYv~a~~~tv~~I--h~~E~~GDILvFLtGqe 269 (674)
T KOG0922|consen 196 LKLIIMSATLDAEKFSEYFNNAPILTIPGRTFPVEILYLKEP----TADYVDAALITVIQI--HLTEPPGDILVFLTGQE 269 (674)
T ss_pred ceEEEEeeeecHHHHHHHhcCCceEeecCCCCceeEEeccCC----chhhHHHHHHHHHHH--HccCCCCCEEEEeCCHH
Confidence 999999999999999999999999999999999999999864 445555555555555 23356899999999996
Q ss_pred c--cccccchHhHHHHhHh-----hccccCCCCCC
Q psy496 287 Y--PVQEYYLEDVLNMTRT-----LKRSETQQYPN 314 (319)
Q Consensus 287 ~--~v~~~~~~~~~~~~~~-----~~~~~~~~~~~ 314 (319)
+ .+-....+.+.+.... |+.|+++|...
T Consensus 270 EIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~ 304 (674)
T KOG0922|consen 270 EIEAACELLRERAKSLPEDCPELILPLYGALPSEE 304 (674)
T ss_pred HHHHHHHHHHHHhhhccccCcceeeeecccCCHHH
Confidence 5 2222333333333333 78999987543
No 2
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1e-37 Score=314.43 Aligned_cols=263 Identities=37% Similarity=0.515 Sum_probs=217.7
Q ss_pred ccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHH
Q psy496 42 ECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAER 121 (319)
Q Consensus 42 ~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~ 121 (319)
..+.+..++..+|+.....+++....+|++++|+||||||||++.+..+++..+. ....|.+++|+|..|..++++
T Consensus 38 ~~~~~~~~~~~LPv~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~~----~~g~I~~tQPRRlAArsvA~R 113 (845)
T COG1643 38 NVPDILEYRSGLPVTAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGLG----IAGKIGCTQPRRLAARSVAER 113 (845)
T ss_pred ccchhhhccccCCcHHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhcc----cCCeEEecCchHHHHHHHHHH
Confidence 3333456788999999999999999999999999999999999999999998762 245999999999999999999
Q ss_pred HHHHhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhh
Q psy496 122 VAQERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVT 201 (319)
Q Consensus 122 ~~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~ 201 (319)
++++++..+ |..|||.+++++... .+++|-++|.|+|++.++.++.|+.|++||+||+|+|+++.|+++++++.+.
T Consensus 114 vAeel~~~~---G~~VGY~iRfe~~~s-~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~ 189 (845)
T COG1643 114 VAEELGEKL---GETVGYSIRFESKVS-PRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLL 189 (845)
T ss_pred HHHHhCCCc---CceeeEEEEeeccCC-CCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHH
Confidence 999999988 999999999999885 5789999999999999999999999999999999999999999999999966
Q ss_pred c-cccCceEEEeccccChhhHhhhhCCCCEEEeCCccccceeeeehhhhhhhhhhHHHHHHHHhhhhhhhccccCCCcEE
Q psy496 202 D-KRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGGAPIL 280 (319)
Q Consensus 202 ~-~~~~~qiv~lSAT~~~~~l~~~l~~~~~i~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LV 280 (319)
. .++++++|.||||+|.++|++||+++|++.++||.|||+++|.+.... +..+-..+....... .....|++||
T Consensus 190 ~~rr~DLKiIimSATld~~rfs~~f~~apvi~i~GR~fPVei~Y~~~~~~--d~~l~~ai~~~v~~~---~~~~~GdILv 264 (845)
T COG1643 190 ARRRDDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEA--DYILLDAIVAAVDIH---LREGSGSILV 264 (845)
T ss_pred hhcCCCceEEEEecccCHHHHHHHcCCCCEEEecCCccceEEEecCCCCc--chhHHHHHHHHHHHh---ccCCCCCEEE
Confidence 6 455899999999999999999999999999999999999999766421 221222222222222 2234899999
Q ss_pred EeCCccccccc-cchH--hHHHHhHhhccccCCCCCCccC
Q psy496 281 HIPGFTYPVQE-YYLE--DVLNMTRTLKRSETQQYPNDQQ 317 (319)
Q Consensus 281 Flp~R~~~v~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
|+||..+=-+. .-+. ++...+..||+|++++...|++
T Consensus 265 FLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~r 304 (845)
T COG1643 265 FLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVR 304 (845)
T ss_pred ECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHh
Confidence 99998652111 1122 2225688999999998877664
No 3
>KOG0923|consensus
Probab=100.00 E-value=3.6e-37 Score=293.91 Aligned_cols=258 Identities=33% Similarity=0.489 Sum_probs=219.7
Q ss_pred hhhhhhhcccCCCccccccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhH
Q psy496 9 ITYRLKEDLAGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l 88 (319)
|+|-...+++|+.....-...-. .++ + . .+---++++|++.-..+++....++|+++|.|+||||||++.+.
T Consensus 228 idF~~e~~~~~~~e~~~~~~~~~---~~~-~-~---~iee~RksLPVy~ykdell~av~e~QVLiI~GeTGSGKTTQiPQ 299 (902)
T KOG0923|consen 228 IDFIQESKLAGSNEEDAKDAPTA---YER-R-E---SIEEVRKSLPVYPYKDELLKAVKEHQVLIIVGETGSGKTTQIPQ 299 (902)
T ss_pred hhHHHhhhccccCccccchhhHH---HHH-H-H---HHHHHHhcCCchhhHHHHHHHHHhCcEEEEEcCCCCCccccccH
Confidence 88888888877765543221100 000 0 0 00112678999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhc
Q psy496 89 FILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQS 168 (319)
Q Consensus 89 ~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~ 168 (319)
++.+..+..+ ..+|-|++|+|..|..++.+++++++... |..+||++++++++. +++-|-+||.|+|++.+..
T Consensus 300 yL~EaGytk~---gk~IgcTQPRRVAAmSVAaRVA~EMgvkL---G~eVGYsIRFEdcTS-ekTvlKYMTDGmLlREfL~ 372 (902)
T KOG0923|consen 300 YLYEAGYTKG---GKKIGCTQPRRVAAMSVAARVAEEMGVKL---GHEVGYSIRFEDCTS-EKTVLKYMTDGMLLREFLS 372 (902)
T ss_pred HHHhcccccC---CceEeecCcchHHHHHHHHHHHHHhCccc---ccccceEEEeccccC-cceeeeeecchhHHHHHhc
Confidence 9998877655 23699999999999999999999999998 999999999999987 6788999999999999999
Q ss_pred CCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEeccccChhhHhhhhCCCCEEEeCCccccceeeeehhh
Q psy496 169 DPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYYLEDV 248 (319)
Q Consensus 169 ~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~~~~~l~~~l~~~~~i~~~~r~~~v~~~~~~~~ 248 (319)
.++|..++++||||||+|.+++|++.++++.+...+|++++++.|||+|.+.|..||+++|+|.++||.+||+++|...+
T Consensus 373 epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT~DAekFS~fFDdapIF~iPGRRyPVdi~Yt~~P 452 (902)
T KOG0923|consen 373 EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATMDAEKFSAFFDDAPIFRIPGRRYPVDIFYTKAP 452 (902)
T ss_pred cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccccCHHHHHHhccCCcEEeccCcccceeeecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999776
Q ss_pred hhhhhhhHHHHHHHHhhhhhhhccccCCCcEEEeCCccc
Q psy496 249 LNMTRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTY 287 (319)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~ 287 (319)
..++-..+.-.++.+ ......|++|||+.|...
T Consensus 453 ----EAdYldAai~tVlqI--H~tqp~GDILVFltGQeE 485 (902)
T KOG0923|consen 453 ----EADYLDAAIVTVLQI--HLTQPLGDILVFLTGQEE 485 (902)
T ss_pred ----chhHHHHHHhhheee--EeccCCccEEEEeccHHH
Confidence 456666665555555 333457999999999865
No 4
>KOG0924|consensus
Probab=100.00 E-value=6.5e-35 Score=279.10 Aligned_cols=231 Identities=36% Similarity=0.520 Sum_probs=204.1
Q ss_pred ccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHH
Q psy496 46 MVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQE 125 (319)
Q Consensus 46 ~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~ 125 (319)
...|++.+|+..-..+++....+|++|+|.|+||||||++.+.++++..+.. .+.|.|++|+|.+|..++++++++
T Consensus 348 i~eqrq~LPvf~~R~~ll~~ir~n~vvvivgETGSGKTTQl~QyL~edGY~~----~GmIGcTQPRRvAAiSVAkrVa~E 423 (1042)
T KOG0924|consen 348 IREQRQYLPVFACRDQLLSVIRENQVVVIVGETGSGKTTQLAQYLYEDGYAD----NGMIGCTQPRRVAAISVAKRVAEE 423 (1042)
T ss_pred HHHHHhhcchHHHHHHHHHHHhhCcEEEEEecCCCCchhhhHHHHHhccccc----CCeeeecCchHHHHHHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999888765543 358999999999999999999999
Q ss_pred hccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhcccc
Q psy496 126 RDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRK 205 (319)
Q Consensus 126 ~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~ 205 (319)
++..+ |..|||.+++++.+. ..+.|-++|.|+|++....+..|..+++||+||||+|++++|++.++++.+...+.
T Consensus 424 M~~~l---G~~VGYsIRFEdvT~-~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRr 499 (1042)
T KOG0924|consen 424 MGVTL---GDTVGYSIRFEDVTS-EDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRR 499 (1042)
T ss_pred hCCcc---ccccceEEEeeecCC-CceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhc
Confidence 99988 999999999999887 67889999999999999988899999999999999999999999999999999888
Q ss_pred CceEEEeccccChhhHhhhhCCCCEEEeCCccccceeeeehhhhhhhhhhHHHHHHHHhhhhhhhccccCCCcEEEeCCc
Q psy496 206 DLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGGAPILHIPGF 285 (319)
Q Consensus 206 ~~qiv~lSAT~~~~~l~~~l~~~~~i~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R 285 (319)
++++|..|||||.+.|+.|||++|.|+++||.|||++.|...+ ..++-..+..-.+.+ -.....|++|||.+|+
T Consensus 500 dlKliVtSATm~a~kf~nfFgn~p~f~IpGRTyPV~~~~~k~p----~eDYVeaavkq~v~I--hl~~~~GdilIfmtGq 573 (1042)
T KOG0924|consen 500 DLKLIVTSATMDAQKFSNFFGNCPQFTIPGRTYPVEIMYTKTP----VEDYVEAAVKQAVQI--HLSGPPGDILIFMTGQ 573 (1042)
T ss_pred cceEEEeeccccHHHHHHHhCCCceeeecCCccceEEEeccCc----hHHHHHHHHhhheEe--eccCCCCCEEEecCCC
Confidence 9999999999999999999999999999999999999998775 344445444444443 2223469999999998
Q ss_pred cccccc
Q psy496 286 TYPVQE 291 (319)
Q Consensus 286 ~~~v~~ 291 (319)
.+++.
T Consensus 574 -ediE~ 578 (1042)
T KOG0924|consen 574 -EDIEC 578 (1042)
T ss_pred -cchhH
Confidence 44444
No 5
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=100.00 E-value=8.5e-34 Score=289.64 Aligned_cols=248 Identities=30% Similarity=0.453 Sum_probs=194.1
Q ss_pred hhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCC
Q psy496 53 ISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGR 132 (319)
Q Consensus 53 ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~ 132 (319)
+|+.....+++....++++++++|+||||||++|++++++.... ..+|++++|||++|.|+++++++.++..+
T Consensus 4 LPi~~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~-----~~~ilvlqPrR~aA~qia~rva~~l~~~~-- 76 (812)
T PRK11664 4 LPVAAVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI-----NGKIIMLEPRRLAARNVAQRLAEQLGEKP-- 76 (812)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc-----CCeEEEECChHHHHHHHHHHHHHHhCccc--
Confidence 78888888999999999999999999999999999999976432 23899999999999999999999888777
Q ss_pred CCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhc-cccCceEEE
Q psy496 133 PGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTD-KRKDLKLIL 211 (319)
Q Consensus 133 ~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~-~~~~~qiv~ 211 (319)
|..+|+.+++++... .+++|+|+|||+|++++..++.++++++||+||+|+|++..|+.++.+..+.. .+++.|+|+
T Consensus 77 -g~~VGy~vr~~~~~~-~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlil 154 (812)
T PRK11664 77 -GETVGYRMRAESKVG-PNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLI 154 (812)
T ss_pred -CceEEEEecCccccC-CCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEE
Confidence 899999998876554 45789999999999999888899999999999999999998888777766543 567899999
Q ss_pred eccccChhhHhhhhCCCCEEEeCCccccceeeeehhhhhhhhhhHHHHHHHHhhhhhhhccccCCCcEEEeCCccccccc
Q psy496 212 MSATLNAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQE 291 (319)
Q Consensus 212 lSAT~~~~~l~~~l~~~~~i~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~v~~ 291 (319)
||||++.+.+.+||++++++.++++.+|++++|..... .......+....... +.. ..|++|||+||+...-.+
T Consensus 155 mSATl~~~~l~~~~~~~~~I~~~gr~~pV~~~y~~~~~---~~~~~~~v~~~l~~~--l~~-~~g~iLVFlpg~~ei~~l 228 (812)
T PRK11664 155 MSATLDNDRLQQLLPDAPVIVSEGRSFPVERRYQPLPA---HQRFDEAVARATAEL--LRQ-ESGSLLLFLPGVGEIQRV 228 (812)
T ss_pred EecCCCHHHHHHhcCCCCEEEecCccccceEEeccCch---hhhHHHHHHHHHHHH--HHh-CCCCEEEEcCCHHHHHHH
Confidence 99999888899999999999999999999999975431 111211111111121 122 268999999998775443
Q ss_pred cc-hHh-HHHHhHhhccccCCCCCCc
Q psy496 292 YY-LED-VLNMTRTLKRSETQQYPND 315 (319)
Q Consensus 292 ~~-~~~-~~~~~~~~~~~~~~~~~~~ 315 (319)
.. +.+ ......+++++|.++..++
T Consensus 229 ~~~L~~~~~~~~~v~~Lhg~l~~~eq 254 (812)
T PRK11664 229 QEQLASRVASDVLLCPLYGALSLAEQ 254 (812)
T ss_pred HHHHHHhccCCceEEEeeCCCCHHHH
Confidence 21 221 1124567888887765443
No 6
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1e-33 Score=288.68 Aligned_cols=246 Identities=29% Similarity=0.419 Sum_probs=191.6
Q ss_pred hhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCC
Q psy496 54 SAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRP 133 (319)
Q Consensus 54 p~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~ 133 (319)
|+.....+++....+|++++++|+||||||+++++++++.... ..+|++++|||++|.|+++++++.++..+
T Consensus 2 Pi~~~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~~-----~~~ilvlqPrR~aA~qiA~rva~~~~~~~--- 73 (819)
T TIGR01970 2 PIHAVLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPGI-----GGKIIMLEPRRLAARSAAQRLASQLGEAV--- 73 (819)
T ss_pred CchHHHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhcc-----CCeEEEEeCcHHHHHHHHHHHHHHhCCCc---
Confidence 5566667888888889999999999999999999999987632 34899999999999999999999888777
Q ss_pred CceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhc-cccCceEEEe
Q psy496 134 GSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTD-KRKDLKLILM 212 (319)
Q Consensus 134 g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~-~~~~~qiv~l 212 (319)
|..+|+.+++++... .+++|+|+|||+|++++..++.++++++|||||+|+|+++.|+.+..++.+.. .+++.|+|+|
T Consensus 74 g~~VGy~vr~~~~~s-~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlm 152 (819)
T TIGR01970 74 GQTVGYRVRGENKVS-RRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAM 152 (819)
T ss_pred CcEEEEEEccccccC-CCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEE
Confidence 899999999876654 46789999999999999888899999999999999988888888777766644 5678999999
Q ss_pred ccccChhhHhhhhCCCCEEEeCCccccceeeeehhhhhhhhhhHHHHHHHHhhhhhhhccccCCCcEEEeCCcccccccc
Q psy496 213 SATLNAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEY 292 (319)
Q Consensus 213 SAT~~~~~l~~~l~~~~~i~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~v~~~ 292 (319)
|||++.+.+.+||++++++.++++.+||+++|..... ...+...+....... +.. .+|++|||+||+....+..
T Consensus 153 SATl~~~~l~~~l~~~~vI~~~gr~~pVe~~y~~~~~---~~~~~~~v~~~l~~~--l~~-~~g~iLVFlpg~~eI~~l~ 226 (819)
T TIGR01970 153 SATLDGERLSSLLPDAPVVESEGRSFPVEIRYLPLRG---DQRLEDAVSRAVEHA--LAS-ETGSILVFLPGQAEIRRVQ 226 (819)
T ss_pred eCCCCHHHHHHHcCCCcEEEecCcceeeeeEEeecch---hhhHHHHHHHHHHHH--HHh-cCCcEEEEECCHHHHHHHH
Confidence 9999888899999999999999999999999976431 111111111111121 122 2689999999987754432
Q ss_pred -chHhHH-HHhHhhccccCCCCCC
Q psy496 293 -YLEDVL-NMTRTLKRSETQQYPN 314 (319)
Q Consensus 293 -~~~~~~-~~~~~~~~~~~~~~~~ 314 (319)
.+.+.. ....++++++.++..+
T Consensus 227 ~~L~~~~~~~~~v~pLHg~L~~~e 250 (819)
T TIGR01970 227 EQLAERLDSDVLICPLYGELSLAA 250 (819)
T ss_pred HHHHhhcCCCcEEEEecCCCCHHH
Confidence 122211 2356788888776543
No 7
>KOG0920|consensus
Probab=100.00 E-value=2.3e-33 Score=282.29 Aligned_cols=197 Identities=54% Similarity=0.897 Sum_probs=185.3
Q ss_pred ccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccc
Q psy496 50 PRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQ 129 (319)
Q Consensus 50 ~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~ 129 (319)
+..+|++...+.++....++++++|+|+||||||+..+..+++..+..+ ..++|+|++|+|..|..++++++.+.+..
T Consensus 169 R~~LPa~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~--~~~~IicTQPRRIsAIsvAeRVa~ER~~~ 246 (924)
T KOG0920|consen 169 RESLPAYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESG--AACNIICTQPRRISAISVAERVAKERGES 246 (924)
T ss_pred HHhCccHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcC--CCCeEEecCCchHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999999999999999999999877665 57899999999999999999999999888
Q ss_pred cCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceE
Q psy496 130 CGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKL 209 (319)
Q Consensus 130 ~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qi 209 (319)
. |..|||+++.+.....+ +.+.+||.|.|++.+..++.+.++.++|+||+|+|++.+|+++..++.+...+|++++
T Consensus 247 ~---g~~VGYqvrl~~~~s~~-t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~Lkv 322 (924)
T KOG0920|consen 247 L---GEEVGYQVRLESKRSRE-TRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKV 322 (924)
T ss_pred c---CCeeeEEEeeecccCCc-eeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceE
Confidence 7 99999999998877654 8999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeccccChhhHhhhhCCCCEEEeCCccccceeeeehhhhhhh
Q psy496 210 ILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMT 252 (319)
Q Consensus 210 v~lSAT~~~~~l~~~l~~~~~i~~~~r~~~v~~~~~~~~~~~~ 252 (319)
|+||||+|.+.+.+||++++++.++|+.+||..+|+++.+..+
T Consensus 323 ILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~ 365 (924)
T KOG0920|consen 323 ILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKT 365 (924)
T ss_pred EEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999998877653
No 8
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=100.00 E-value=1.4e-32 Score=287.09 Aligned_cols=254 Identities=33% Similarity=0.456 Sum_probs=202.4
Q ss_pred cccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHh
Q psy496 47 VTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQER 126 (319)
Q Consensus 47 ~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~ 126 (319)
......+|+.....+++....+|++++|+|+||||||+..+..+++. +.+..++|++++|+|..|..+++++++++
T Consensus 60 ~~~~~~LPi~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~lle~----~~~~~~~I~~tQPRRlAA~svA~RvA~el 135 (1283)
T TIGR01967 60 IRYPDNLPVSAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICLEL----GRGSHGLIGHTQPRRLAARTVAQRIAEEL 135 (1283)
T ss_pred ccCCCCCCHHHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHHHc----CCCCCceEecCCccHHHHHHHHHHHHHHh
Confidence 44667899999999999999999999999999999999988777653 22334589999999999999999999999
Q ss_pred ccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccC
Q psy496 127 DEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKD 206 (319)
Q Consensus 127 ~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~ 206 (319)
+..+ |..|||.+++++... .+++|.++|+|+|++.+..++.|+++++|||||+|+|+++.|++++.++.+...+++
T Consensus 136 g~~l---G~~VGY~vR~~~~~s-~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpd 211 (1283)
T TIGR01967 136 GTPL---GEKVGYKVRFHDQVS-SNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPD 211 (1283)
T ss_pred CCCc---ceEEeeEEcCCcccC-CCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhccchhHHHHHHHHHhhCCC
Confidence 9888 999999999888775 478899999999999999889999999999999999999999999988888777789
Q ss_pred ceEEEeccccChhhHhhhhCCCCEEEeCCccccceeeeehhhhhhh--hhhHHHHHHHHhhhhhhhccccCCCcEEEeCC
Q psy496 207 LKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMT--RKDLKLILMSATLNAEKFSQFFGGAPILHIPG 284 (319)
Q Consensus 207 ~qiv~lSAT~~~~~l~~~l~~~~~i~~~~r~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~ 284 (319)
.|+|+||||++.+.++++|++++++.++|+.+||+++|........ ..+....+....... .. ...|++|||+||
T Consensus 212 LKlIlmSATld~~~fa~~F~~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l--~~-~~~GdILVFLpg 288 (1283)
T TIGR01967 212 LKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDEL--FA-EGPGDILIFLPG 288 (1283)
T ss_pred CeEEEEeCCcCHHHHHHHhcCCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHH--Hh-hCCCCEEEeCCC
Confidence 9999999999999999999999999999999999999875421110 111222222222222 22 236899999999
Q ss_pred ccccccccchHhHHH-----HhHhhccccCCCCCC
Q psy496 285 FTYPVQEYYLEDVLN-----MTRTLKRSETQQYPN 314 (319)
Q Consensus 285 R~~~v~~~~~~~~~~-----~~~~~~~~~~~~~~~ 314 (319)
+...-++ .+.+. ...++++|+.++..+
T Consensus 289 ~~EI~~l---~~~L~~~~~~~~~VlpLhg~Ls~~e 320 (1283)
T TIGR01967 289 EREIRDA---AEILRKRNLRHTEILPLYARLSNKE 320 (1283)
T ss_pred HHHHHHH---HHHHHhcCCCCcEEEeccCCCCHHH
Confidence 9774332 22222 234667787765433
No 9
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=100.00 E-value=1.3e-32 Score=286.65 Aligned_cols=255 Identities=31% Similarity=0.454 Sum_probs=197.9
Q ss_pred cccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHh
Q psy496 47 VTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQER 126 (319)
Q Consensus 47 ~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~ 126 (319)
+..+..+|+....++++....+|++++|+|+||||||+.++..+++. +.+..+.|++++|+|..|..+++++++++
T Consensus 67 ~~~~~~LPi~~~r~~Il~ai~~~~VviI~GeTGSGKTTqlPq~lle~----g~g~~g~I~~TQPRRlAArsLA~RVA~El 142 (1294)
T PRK11131 67 ITYPENLPVSQKKQDILEAIRDHQVVIVAGETGSGKTTQLPKICLEL----GRGVKGLIGHTQPRRLAARTVANRIAEEL 142 (1294)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHc----CCCCCCceeeCCCcHHHHHHHHHHHHHHH
Confidence 55677899999999999999999999999999999999876655542 23334589999999999999999999999
Q ss_pred ccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccC
Q psy496 127 DEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKD 206 (319)
Q Consensus 127 ~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~ 206 (319)
+..+ |..+||.+++++... .+++|+++|||+|++++..++.|+++++|||||||+|++++|++++.++.+...+++
T Consensus 143 ~~~l---G~~VGY~vrf~~~~s-~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn~DfLLg~Lk~lL~~rpd 218 (1294)
T PRK11131 143 ETEL---GGCVGYKVRFNDQVS-DNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELLPRRPD 218 (1294)
T ss_pred hhhh---cceeceeecCccccC-CCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccccchHHHHHHHhhhcCCC
Confidence 8776 889999999887764 568999999999999998888899999999999999999999999988888777778
Q ss_pred ceEEEeccccChhhHhhhhCCCCEEEeCCccccceeeeehhhhhhh--hhhHHHHHHHHhhhhhhhccccCCCcEEEeCC
Q psy496 207 LKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMT--RKDLKLILMSATLNAEKFSQFFGGAPILHIPG 284 (319)
Q Consensus 207 ~qiv~lSAT~~~~~l~~~l~~~~~i~~~~r~~~v~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~ 284 (319)
.|+|+||||++.+.++++|++++++.++++.+||+++|........ ..+....+...... +.....|++|||+||
T Consensus 219 lKvILmSATid~e~fs~~F~~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~---l~~~~~GdILVFLpg 295 (1294)
T PRK11131 219 LKVIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDE---LGREGPGDILIFMSG 295 (1294)
T ss_pred ceEEEeeCCCCHHHHHHHcCCCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHH---HhcCCCCCEEEEcCC
Confidence 9999999999999999999999999999999999999976431110 01111112222111 112347899999999
Q ss_pred ccccccccc-hHhH-HHHhHhhccccCCCC
Q psy496 285 FTYPVQEYY-LEDV-LNMTRTLKRSETQQY 312 (319)
Q Consensus 285 R~~~v~~~~-~~~~-~~~~~~~~~~~~~~~ 312 (319)
+...-++.- +... ...+.++++|+.++-
T Consensus 296 ~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~ 325 (1294)
T PRK11131 296 EREIRDTADALNKLNLRHTEILPLYARLSN 325 (1294)
T ss_pred HHHHHHHHHHHHhcCCCcceEeecccCCCH
Confidence 977533311 1110 011235566776553
No 10
>KOG0925|consensus
Probab=100.00 E-value=1.3e-32 Score=255.27 Aligned_cols=224 Identities=37% Similarity=0.599 Sum_probs=200.8
Q ss_pred cccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhcc
Q psy496 49 QPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDE 128 (319)
Q Consensus 49 Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~ 128 (319)
-++.+|++....+.+....+||.++++|+||||||+..+.++++...... ..|.|++|+|..|.+++++++++++.
T Consensus 42 ~R~~LPvw~~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~~~~~~----~~v~CTQprrvaamsva~RVadEMDv 117 (699)
T KOG0925|consen 42 KRRELPVWEQKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEYELSHL----TGVACTQPRRVAAMSVAQRVADEMDV 117 (699)
T ss_pred HHhcCchHHhHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHHHHhhc----cceeecCchHHHHHHHHHHHHHHhcc
Confidence 35788999999999999999999999999999999999999988765544 47999999999999999999999999
Q ss_pred ccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCce
Q psy496 129 QCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLK 208 (319)
Q Consensus 129 ~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~q 208 (319)
.. |..|||.++++++..+ ++-+.+||.|+|++...+++.+..++++|+||||+|++.+|.+.++++.+...+|+++
T Consensus 118 ~l---G~EVGysIrfEdC~~~-~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk 193 (699)
T KOG0925|consen 118 TL---GEEVGYSIRFEDCTSP-NTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLK 193 (699)
T ss_pred cc---chhccccccccccCCh-hHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCce
Confidence 88 9999999999999864 5667899999999999999999999999999999999999999999999998889999
Q ss_pred EEEeccccChhhHhhhhCCCCEEEeCCccccceeeeehhhhhhhhhhHHHHHHHHhhhhhhhccccCCCcEEEeCCccc
Q psy496 209 LILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTY 287 (319)
Q Consensus 209 iv~lSAT~~~~~l~~~l~~~~~i~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~ 287 (319)
+|.+|||++..++.+||+++|++.++| .+||+++|.+.+ ..+.-..+..+++.+ ......|++|||+++..+
T Consensus 194 ~vvmSatl~a~Kfq~yf~n~Pll~vpg-~~PvEi~Yt~e~----erDylEaairtV~qi--h~~ee~GDilvFLtgeee 265 (699)
T KOG0925|consen 194 LVVMSATLDAEKFQRYFGNAPLLAVPG-THPVEIFYTPEP----ERDYLEAAIRTVLQI--HMCEEPGDILVFLTGEEE 265 (699)
T ss_pred EEEeecccchHHHHHHhCCCCeeecCC-CCceEEEecCCC----ChhHHHHHHHHHHHH--HhccCCCCEEEEecCHHH
Confidence 999999999999999999999999999 899999999876 455556666666666 333348999999999755
No 11
>KOG0338|consensus
Probab=99.97 E-value=2.9e-30 Score=240.84 Aligned_cols=242 Identities=19% Similarity=0.220 Sum_probs=167.3
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCC-CccEEEEecccHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRG-SECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~-~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
++|||..+||+.+.|+|+.+++. ||||||.+|.+|+|+++..+.++ ...+||++.||||||.|++....
T Consensus 204 PTpIQ~a~IPvallgkDIca~A~----------TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~ 273 (691)
T KOG0338|consen 204 PTPIQVATIPVALLGKDICACAA----------TGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTK 273 (691)
T ss_pred CCchhhhcccHHhhcchhhheec----------ccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHH
Confidence 56999999999999999999998 99999999999999999766543 45688999999999999876544
Q ss_pred H---HhccccCCCCceEEE-EEecccccCCCCceEEEECchHHHHHHhcCCC--CCCccEEEEecccccccchhHHHHHH
Q psy496 124 Q---ERDEQCGRPGSSVGY-QIRLEKELPRKRGSILYCTAGILPEVMQSDPI--LSGVSHIVMDEIHERSMISDFLLAIL 197 (319)
Q Consensus 124 ~---~~~~~~~~~g~~vg~-~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~--l~~v~~vViDEah~~~~~~~~~~~~l 197 (319)
+ +....+ |..+|. .++........+++|+|+|||||++|+++.+. ++++.++|+||||+ .+..+|...+-
T Consensus 274 qlaqFt~I~~---~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADR-MLeegFademn 349 (691)
T KOG0338|consen 274 QLAQFTDITV---GLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADR-MLEEGFADEMN 349 (691)
T ss_pred HHHhhcccee---eeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHH-HHHHHHHHHHH
Confidence 4 444444 666652 34444444446788999999999999988775 89999999999996 34555555555
Q ss_pred HhhhccccCceEEEecccc--ChhhHhhhhCCCCE-EEeCCc-cc--cceeeeehhhhhhhhhhHHHHHHHHhhhhhhhc
Q psy496 198 KDVTDKRKDLKLILMSATL--NAEKFSQFFGGAPI-LHIPGF-TY--PVQEYYLEDVLNMTRKDLKLILMSATLNAEKFS 271 (319)
Q Consensus 198 ~~~~~~~~~~qiv~lSAT~--~~~~l~~~l~~~~~-i~~~~r-~~--~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (319)
..+...+.++|.++||||| .++++++.--+.|+ +.++.. .. .+...|++- ...+...+..+.... +.
T Consensus 350 Eii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvrifvd~~~~~a~~LtQEFiRI--R~~re~dRea~l~~l-----~~ 422 (691)
T KOG0338|consen 350 EIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVRIFVDPNKDTAPKLTQEFIRI--RPKREGDREAMLASL-----IT 422 (691)
T ss_pred HHHHhccccccceeehhhhHHHHHHHHHhhcCCCeEEEeCCccccchhhhHHHhee--ccccccccHHHHHHH-----HH
Confidence 5556677899999999999 56778876444443 333321 11 122223211 111233444433222 22
Q ss_pred cccCCCcEEEeCCccccccccch-HhHHHHhHhhccc
Q psy496 272 QFFGGAPILHIPGFTYPVQEYYL-EDVLNMTRTLKRS 307 (319)
Q Consensus 272 ~~~~g~~LVFlp~R~~~v~~~~~-~~~~~~~~~~~~~ 307 (319)
..+...++||+.|...|.+.+.+ .=+-..+--||-+
T Consensus 423 rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGs 459 (691)
T KOG0338|consen 423 RTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGS 459 (691)
T ss_pred HhcccceEEEEehHHHHHHHHHHHHHhhchhhhhccc
Confidence 23367899999999998887653 3333333444443
No 12
>KOG0926|consensus
Probab=99.96 E-value=3.9e-29 Score=243.03 Aligned_cols=229 Identities=33% Similarity=0.479 Sum_probs=189.7
Q ss_pred ccc--ccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCC-ccEEEEecccHHHHHHHHHHHH
Q psy496 47 VTQ--PRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGS-ECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 47 ~~Q--~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~-~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
-|| +..+|++..-+.++.....|..|+|||.||||||++.+..++++.+...... ...|-+++|+|.+|..++++++
T Consensus 247 EIQ~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa 326 (1172)
T KOG0926|consen 247 EIQESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVA 326 (1172)
T ss_pred HHHHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHH
Confidence 345 4578999999999999999999999999999999999999998876654222 3489999999999999999999
Q ss_pred HHhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhcc
Q psy496 124 QERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDK 203 (319)
Q Consensus 124 ~~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~ 203 (319)
.+++. . |..|||+++++.... +.+.|.+||.|.|++.+.++..|..|+.|||||||+|++++|++++++.++..+
T Consensus 327 ~EL~~-~---~~eVsYqIRfd~ti~-e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~L 401 (1172)
T KOG0926|consen 327 FELGV-L---GSEVSYQIRFDGTIG-EDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPL 401 (1172)
T ss_pred HHhcc-C---ccceeEEEEeccccC-CCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHH
Confidence 99987 4 899999999988765 568899999999999999999999999999999999999999999999888653
Q ss_pred c----------cCceEEEeccccChhhHhh---hhC-CCCEEEeCCccccceeeeehhhhhhhhhhHHHHHHHHhhhhhh
Q psy496 204 R----------KDLKLILMSATLNAEKFSQ---FFG-GAPILHIPGFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEK 269 (319)
Q Consensus 204 ~----------~~~qiv~lSAT~~~~~l~~---~l~-~~~~i~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (319)
+ ..+++|+||||+.+.+|.+ .|. .+|++.++.|.|||.+||.... ..++-.-+...+..+
T Consensus 402 R~k~~ke~~~~kpLKLIIMSATLRVsDFtenk~LFpi~pPlikVdARQfPVsIHF~krT----~~DYi~eAfrKtc~I-- 475 (1172)
T KOG0926|consen 402 RQKYYKEQCQIKPLKLIIMSATLRVSDFTENKRLFPIPPPLIKVDARQFPVSIHFNKRT----PDDYIAEAFRKTCKI-- 475 (1172)
T ss_pred HHHHhhhhcccCceeEEEEeeeEEecccccCceecCCCCceeeeecccCceEEEeccCC----CchHHHHHHHHHHHH--
Confidence 3 2578999999997777763 454 4679999999999999997653 233333333333333
Q ss_pred hccccCCCcEEEeCCcc
Q psy496 270 FSQFFGGAPILHIPGFT 286 (319)
Q Consensus 270 ~~~~~~g~~LVFlp~R~ 286 (319)
.+..+.|.+||||.|..
T Consensus 476 H~kLP~G~ILVFvTGQq 492 (1172)
T KOG0926|consen 476 HKKLPPGGILVFVTGQQ 492 (1172)
T ss_pred hhcCCCCcEEEEEeChH
Confidence 34567999999999974
No 13
>KOG0330|consensus
Probab=99.96 E-value=1.5e-29 Score=229.70 Aligned_cols=218 Identities=19% Similarity=0.156 Sum_probs=153.6
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
+++||.++||+.+.|+|+++.++ ||||||.+|.+||+++++...+.+.+.|+. ||||||.|+++.+..
T Consensus 84 PT~IQ~~aiP~~L~g~dvIglAe----------TGSGKT~afaLPIl~~LL~~p~~~~~lVLt--PtRELA~QI~e~fe~ 151 (476)
T KOG0330|consen 84 PTKIQSEAIPVALGGRDVIGLAE----------TGSGKTGAFALPILQRLLQEPKLFFALVLT--PTRELAQQIAEQFEA 151 (476)
T ss_pred CchhhhhhcchhhCCCcEEEEec----------cCCCchhhhHHHHHHHHHcCCCCceEEEec--CcHHHHHHHHHHHHH
Confidence 57899999999999888777666 999999999999999999877655555555 999999999998876
Q ss_pred HhccccCCCCceEEEEEec-----ccccCCCCceEEEECchHHHHHHhcCC--CCCCccEEEEecccccccchhHHHHHH
Q psy496 125 ERDEQCGRPGSSVGYQIRL-----EKELPRKRGSILYCTAGILPEVMQSDP--ILSGVSHIVMDEIHERSMISDFLLAIL 197 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~-----~~~~~~~~~~Iiv~Tpg~ll~~l~~~~--~l~~v~~vViDEah~~~~~~~~~~~~l 197 (319)
+-.. . |..+..-+.+ ......++++|+|+|||+|.+++.+.. .+..++++|+||||+ -++++|...+-
T Consensus 152 Lg~~-i---glr~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADr-lLd~dF~~~ld 226 (476)
T KOG0330|consen 152 LGSG-I---GLRVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADR-LLDMDFEEELD 226 (476)
T ss_pred hccc-c---CeEEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHh-hhhhhhHHHHH
Confidence 6222 2 3333222221 122234678999999999999996433 489999999999995 47778887777
Q ss_pred HhhhccccCceEEEecccc--ChhhHhhh-hCCCCEEEeCCccccc---eeeeehhhhhhhhhhHHHHHHHHhhhhhhhc
Q psy496 198 KDVTDKRKDLKLILMSATL--NAEKFSQF-FGGAPILHIPGFTYPV---QEYYLEDVLNMTRKDLKLILMSATLNAEKFS 271 (319)
Q Consensus 198 ~~~~~~~~~~qiv~lSAT~--~~~~l~~~-l~~~~~i~~~~r~~~v---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (319)
+++...+++.|.+++|||| ++.++..- +.++..+.+..+...+ ...|+..+....+. .+.. .++
T Consensus 227 ~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~~s~ky~tv~~lkQ~ylfv~~k~K~~----yLV~------ll~ 296 (476)
T KOG0330|consen 227 YILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVAVSSKYQTVDHLKQTYLFVPGKDKDT----YLVY------LLN 296 (476)
T ss_pred HHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEeccchhcchHHhhhheEeccccccch----hHHH------HHH
Confidence 7777788899999999999 66666654 3333345555544333 34565543221111 1111 133
Q ss_pred cccCCCcEEEeCCccccc
Q psy496 272 QFFGGAPILHIPGFTYPV 289 (319)
Q Consensus 272 ~~~~g~~LVFlp~R~~~v 289 (319)
+..+++++||+++-.-..
T Consensus 297 e~~g~s~iVF~~t~~tt~ 314 (476)
T KOG0330|consen 297 ELAGNSVIVFCNTCNTTR 314 (476)
T ss_pred hhcCCcEEEEEeccchHH
Confidence 445789999999876553
No 14
>KOG0331|consensus
Probab=99.96 E-value=2.4e-29 Score=240.41 Aligned_cols=230 Identities=18% Similarity=0.173 Sum_probs=155.1
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHh----CCCCccEEEEecccHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIAR----NRGSECCIMVTQPRRISAIAIAE 120 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~----~~~~~~~vl~~~Ptr~la~q~~~ 120 (319)
++|||.++||.+++|+|++..+. ||||||++|++|++.++... .++...++|++.||||||.|+.+
T Consensus 114 PtpIQaq~wp~~l~GrD~v~iA~----------TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~ 183 (519)
T KOG0331|consen 114 PTPIQAQGWPIALSGRDLVGIAR----------TGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQA 183 (519)
T ss_pred CchhhhcccceeccCCceEEEec----------cCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHH
Confidence 67999999999999999887777 99999999999999988762 12334577777799999999998
Q ss_pred HHHHHhcc-----ccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhc-CCCCCCccEEEEecccccccchhHHH
Q psy496 121 RVAQERDE-----QCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQS-DPILSGVSHIVMDEIHERSMISDFLL 194 (319)
Q Consensus 121 ~~~~~~~~-----~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~-~~~l~~v~~vViDEah~~~~~~~~~~ 194 (319)
.+.++... .+.++|...+.+.+. .....+|+|+|||||++++.. ...|++++++|+||||+ ++.++|-.
T Consensus 184 ~~~~~~~~~~~~~~cvyGG~~~~~Q~~~----l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADr-MldmGFe~ 258 (519)
T KOG0331|consen 184 EAREFGKSLRLRSTCVYGGAPKGPQLRD----LERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADR-MLDMGFEP 258 (519)
T ss_pred HHHHHcCCCCccEEEEeCCCCccHHHHH----HhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHh-hhccccHH
Confidence 88776432 233444444433321 123467999999999999955 45699999999999995 47888888
Q ss_pred HHHHhhhcc-ccCceEEEecccc--ChhhHhhhhCCCC-EEEeCCccccceeeeehhhhhhhhhhHHHHHHHHhhhhhhh
Q psy496 195 AILKDVTDK-RKDLKLILMSATL--NAEKFSQFFGGAP-ILHIPGFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEKF 270 (319)
Q Consensus 195 ~~l~~~~~~-~~~~qiv~lSAT~--~~~~l~~~l~~~~-~i~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (319)
.+.+.+... +++.|++++|||+ .++.+++-|-+.+ .+.+.+..--...+-........+..-+.......+...
T Consensus 259 qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~-- 336 (519)
T KOG0331|consen 259 QIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFLNNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDI-- 336 (519)
T ss_pred HHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHhcCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHH--
Confidence 888888887 5666899999999 6677776443344 344433311111111222222222222222112222221
Q ss_pred ccccCCCcEEEeCCccccccc
Q psy496 271 SQFFGGAPILHIPGFTYPVQE 291 (319)
Q Consensus 271 ~~~~~g~~LVFlp~R~~~v~~ 291 (319)
....++++||||.|++.+-++
T Consensus 337 ~~~~~~KvIIFc~tkr~~~~l 357 (519)
T KOG0331|consen 337 SSDSEGKVIIFCETKRTCDEL 357 (519)
T ss_pred hccCCCcEEEEecchhhHHHH
Confidence 123378999999999877433
No 15
>KOG0343|consensus
Probab=99.95 E-value=1.2e-28 Score=231.89 Aligned_cols=243 Identities=18% Similarity=0.174 Sum_probs=171.9
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhC--CCCccEEEEecccHHHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARN--RGSECCIMVTQPRRISAIAIAER 121 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~--~~~~~~vl~~~Ptr~la~q~~~~ 121 (319)
..+-||+.+||..+.|.|+++++. ||||||+||+.|++++++..+ ..-..-+|+++||||||.|++..
T Consensus 91 ~~teiQ~~~Ip~aL~G~DvlGAAk----------TGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFev 160 (758)
T KOG0343|consen 91 KMTEIQRDTIPMALQGHDVLGAAK----------TGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEV 160 (758)
T ss_pred cHHHHHHhhcchhccCcccccccc----------cCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHH
Confidence 356889999999999999999999 999999999999999997532 12233455566999999999988
Q ss_pred HHHHhccccCCCCceEEEEE-ecccccCCCCceEEEECchHHHHHHhcCCC--CCCccEEEEecccccccchhHHHHHHH
Q psy496 122 VAQERDEQCGRPGSSVGYQI-RLEKELPRKRGSILYCTAGILPEVMQSDPI--LSGVSHIVMDEIHERSMISDFLLAILK 198 (319)
Q Consensus 122 ~~~~~~~~~~~~g~~vg~~~-~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~--l~~v~~vViDEah~~~~~~~~~~~~l~ 198 (319)
+.+.-.......|..+|..- ..+... -.+.+|+|||||||+.|+..++. .+++.++|+||||+ .++++|...+-.
T Consensus 161 L~kvgk~h~fSaGLiiGG~~~k~E~eR-i~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR-~LDMGFk~tL~~ 238 (758)
T KOG0343|consen 161 LNKVGKHHDFSAGLIIGGKDVKFELER-ISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADR-MLDMGFKKTLNA 238 (758)
T ss_pred HHHHhhccccccceeecCchhHHHHHh-hhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHH-HHHHhHHHHHHH
Confidence 87764444334466666332 222221 24678999999999999987776 57899999999995 588888888888
Q ss_pred hhhccccCceEEEecccc--ChhhHhhh-hCCCCEEEeC-----CccccceeeeehhhhhhhhhhHHHHHHHHhhhhhhh
Q psy496 199 DVTDKRKDLKLILMSATL--NAEKFSQF-FGGAPILHIP-----GFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEKF 270 (319)
Q Consensus 199 ~~~~~~~~~qiv~lSAT~--~~~~l~~~-l~~~~~i~~~-----~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (319)
.+..+++..|.++||||. ++.++++. +.++..+.+. +.+..+..+|....+.. .-.++- ..+.
T Consensus 239 Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP~~vsvhe~a~~atP~~L~Q~y~~v~l~~----Ki~~L~-sFI~---- 309 (758)
T KOG0343|consen 239 IIENLPKKRQTLLFSATQTKSVKDLARLSLKDPVYVSVHENAVAATPSNLQQSYVIVPLED----KIDMLW-SFIK---- 309 (758)
T ss_pred HHHhCChhheeeeeecccchhHHHHHHhhcCCCcEEEEeccccccChhhhhheEEEEehhh----HHHHHH-HHHH----
Confidence 888899999999999999 88999997 4455455543 22333455565443221 111111 1111
Q ss_pred ccccCCCcEEEeCCccccccccchHhHHH----HhHhhccccCCC
Q psy496 271 SQFFGGAPILHIPGFTYPVQEYYLEDVLN----MTRTLKRSETQQ 311 (319)
Q Consensus 271 ~~~~~g~~LVFlp~R~~~v~~~~~~~~~~----~~~~~~~~~~~~ 311 (319)
..+...+|||+.|- -++.|+.++-. -..+++++|++.
T Consensus 310 -shlk~K~iVF~Ssc---Kqvkf~~e~F~rlrpg~~l~~L~G~~~ 350 (758)
T KOG0343|consen 310 -SHLKKKSIVFLSSC---KQVKFLYEAFCRLRPGIPLLALHGTMS 350 (758)
T ss_pred -hccccceEEEEehh---hHHHHHHHHHHhcCCCCceeeeccchh
Confidence 12366899999875 45666555444 345777888763
No 16
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=3.2e-27 Score=231.98 Aligned_cols=241 Identities=21% Similarity=0.208 Sum_probs=154.0
Q ss_pred ccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHh-CCCCccE
Q psy496 26 VPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIAR-NRGSECC 104 (319)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~-~~~~~~~ 104 (319)
+...+++.+.+..+.. ++|||.++||.++.|+|+++.++ ||||||.+|.+|+++.+... ......
T Consensus 36 l~~~ll~~l~~~gf~~---pt~IQ~~~IP~~l~g~Dvi~~A~----------TGsGKT~Af~lP~l~~l~~~~~~~~~~- 101 (513)
T COG0513 36 LSPELLQALKDLGFEE---PTPIQLAAIPLILAGRDVLGQAQ----------TGTGKTAAFLLPLLQKILKSVERKYVS- 101 (513)
T ss_pred CCHHHHHHHHHcCCCC---CCHHHHHHHHHHhCCCCEEEECC----------CCChHHHHHHHHHHHHHhcccccCCCc-
Confidence 4444555554444433 67999999999998877555555 99999999999999997632 211111
Q ss_pred EEEecccHHHHHHHHHHHHHHhcccc-CCCCceEEEE-EecccccCCCCceEEEECchHHHHHHhcC-CCCCCccEEEEe
Q psy496 105 IMVTQPRRISAIAIAERVAQERDEQC-GRPGSSVGYQ-IRLEKELPRKRGSILYCTAGILPEVMQSD-PILSGVSHIVMD 181 (319)
Q Consensus 105 vl~~~Ptr~la~q~~~~~~~~~~~~~-~~~g~~vg~~-~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~-~~l~~v~~vViD 181 (319)
.|++.||||||.|+++.+..+..... ......+|.. ............+|+|+||||+++++... ..+++++++|+|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlD 181 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLD 181 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEec
Confidence 66666999999999998877654321 0001111111 11111111124789999999999999555 559999999999
Q ss_pred cccccccchhHHHHHHHhhhccccCceEEEeccccC--hhhHhh-hhCCCCEEEeCCc-----cccceeeeehhhhhhhh
Q psy496 182 EIHERSMISDFLLAILKDVTDKRKDLKLILMSATLN--AEKFSQ-FFGGAPILHIPGF-----TYPVQEYYLEDVLNMTR 253 (319)
Q Consensus 182 Eah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~~--~~~l~~-~l~~~~~i~~~~r-----~~~v~~~~~~~~~~~~~ 253 (319)
|||+ .+.+++...+.+.+...+++.|+++||||++ ...+++ ++.++..+.+... ...++.+|.... .
T Consensus 182 EADr-mLd~Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~v~~~~~~~~~~~i~q~~~~v~----~ 256 (513)
T COG0513 182 EADR-MLDMGFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIEVSVEKLERTLKKIKQFYLEVE----S 256 (513)
T ss_pred cHhh-hhcCCCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEEEccccccccccCceEEEEEeC----C
Confidence 9996 4677788888887777888899999999993 344444 4444444555422 133455555432 1
Q ss_pred hhHHHHHHHHhhhhhhhccccCCCcEEEeCCcccccc
Q psy496 254 KDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQ 290 (319)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~v~ 290 (319)
..-+..+....++ ....+++|||+++...+-+
T Consensus 257 ~~~k~~~L~~ll~-----~~~~~~~IVF~~tk~~~~~ 288 (513)
T COG0513 257 EEEKLELLLKLLK-----DEDEGRVIVFVRTKRLVEE 288 (513)
T ss_pred HHHHHHHHHHHHh-----cCCCCeEEEEeCcHHHHHH
Confidence 1112222222222 1224579999999876633
No 17
>KOG0346|consensus
Probab=99.94 E-value=2.2e-27 Score=218.41 Aligned_cols=241 Identities=16% Similarity=0.194 Sum_probs=157.2
Q ss_pred CccccccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhC--
Q psy496 21 GKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARN-- 98 (319)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~-- 98 (319)
|....+.+.|-+-+|+. ++.||..|||.+++|+|+++.+. ||||||.+|++|+++.+....
T Consensus 25 gLD~RllkAi~~lG~ek-------pTlIQs~aIplaLEgKDvvarAr----------TGSGKT~AYliPllqkll~~k~t 87 (569)
T KOG0346|consen 25 GLDSRLLKAITKLGWEK-------PTLIQSSAIPLALEGKDVVARAR----------TGSGKTAAYLIPLLQKLLAEKKT 87 (569)
T ss_pred CCCHHHHHHHHHhCcCC-------cchhhhcccchhhcCcceeeeec----------cCCCchHHHHHHHHHHHHHhhhc
Confidence 55556666677777777 77999999999999999888888 999999999999999986532
Q ss_pred ----CCCccEEEEecccHHHHHHHHHHHHHHhccccCC-CCceEEEEEe--cccccCCCCceEEEECchHHHHHHhcCC-
Q psy496 99 ----RGSECCIMVTQPRRISAIAIAERVAQERDEQCGR-PGSSVGYQIR--LEKELPRKRGSILYCTAGILPEVMQSDP- 170 (319)
Q Consensus 99 ----~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~-~g~~vg~~~~--~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~- 170 (319)
.++.+.|++ ||||||+|+++.+.++....... -...+..... .......+.++|+|+||+++++++..+.
T Consensus 88 ~~~e~~~sa~iLv--PTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~~~~~ 165 (569)
T KOG0346|consen 88 NDGEQGPSAVILV--PTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLAAGVL 165 (569)
T ss_pred ccccccceeEEEe--chHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHhhccc
Confidence 234445555 99999999998877763321000 0000110010 1112223578899999999999997665
Q ss_pred -CCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc--ChhhHhhhhCCCCE-EEeCCcccc----cee
Q psy496 171 -ILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL--NAEKFSQFFGGAPI-LHIPGFTYP----VQE 242 (319)
Q Consensus 171 -~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~l~~~~~-i~~~~r~~~----v~~ 242 (319)
.+..++++|+||||.. +..+.-..+.+....+++..|.++||||+ |+..+.+.+-..|+ +......-| +..
T Consensus 166 ~~~~~l~~LVvDEADLl-lsfGYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~nPviLkl~e~el~~~dqL~Q 244 (569)
T KOG0346|consen 166 EYLDSLSFLVVDEADLL-LSFGYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLHNPVILKLTEGELPNPDQLTQ 244 (569)
T ss_pred hhhhheeeEEechhhhh-hhcccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhccCCeEEEeccccCCCcccceE
Confidence 4889999999999961 22223334444445578888999999999 88899987766665 444333322 334
Q ss_pred eeehhhhhhhhhhHHHHHHHHhhhhhhhccccCCCcEEEeCCcccccc
Q psy496 243 YYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQ 290 (319)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~v~ 290 (319)
+++... + ...+.....-..++. -.|.+||||++-.-+-+
T Consensus 245 y~v~cs-e--~DKflllyallKL~L------I~gKsliFVNtIdr~Yr 283 (569)
T KOG0346|consen 245 YQVKCS-E--EDKFLLLYALLKLRL------IRGKSLIFVNTIDRCYR 283 (569)
T ss_pred EEEEec-c--chhHHHHHHHHHHHH------hcCceEEEEechhhhHH
Confidence 444442 1 111211111111111 26899999999444433
No 18
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.94 E-value=2.2e-26 Score=231.05 Aligned_cols=233 Identities=19% Similarity=0.210 Sum_probs=164.8
Q ss_pred chHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhC---CCCccEEEEe
Q psy496 32 DDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARN---RGSECCIMVT 108 (319)
Q Consensus 32 ~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~---~~~~~~vl~~ 108 (319)
.+|+...+.+ +++.|.+|||.+.+| +|+||.||||||||+++++|+++.+...+ ......++|+
T Consensus 13 ~~~~~~~~~~---~t~~Q~~a~~~i~~G----------~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYI 79 (814)
T COG1201 13 REWFKRKFTS---LTPPQRYAIPEIHSG----------ENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYI 79 (814)
T ss_pred HHHHHHhcCC---CCHHHHHHHHHHhCC----------CceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEe
Confidence 3466665433 678899999998764 45888888999999999999999998763 2235789999
Q ss_pred cccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccCC-------CCceEEEECchHHHHHHhcC---CCCCCccEE
Q psy496 109 QPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELPR-------KRGSILYCTAGILPEVMQSD---PILSGVSHI 178 (319)
Q Consensus 109 ~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~~-------~~~~Iiv~Tpg~ll~~l~~~---~~l~~v~~v 178 (319)
+|.|+|++++.+++....... |..+ .++.++.... +.++|+++||+.|--++.+. ..|.+++++
T Consensus 80 sPLkALn~Di~~rL~~~~~~~----G~~v--~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~V 153 (814)
T COG1201 80 SPLKALNNDIRRRLEEPLREL----GIEV--AVRHGDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYV 153 (814)
T ss_pred CcHHHHHHHHHHHHHHHHHHc----CCcc--ceecCCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEE
Confidence 999999999999888775533 5555 4665555443 34689999999997777443 349999999
Q ss_pred EEecccc-----cccchhHHHHHHHhhhccccCceEEEecccc-ChhhHhhhhCCC----CEEEeCC-ccccceeeeehh
Q psy496 179 VMDEIHE-----RSMISDFLLAILKDVTDKRKDLKLILMSATL-NAEKFSQFFGGA----PILHIPG-FTYPVQEYYLED 247 (319)
Q Consensus 179 ViDEah~-----~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~-~~~~l~~~l~~~----~~i~~~~-r~~~v~~~~~~~ 247 (319)
||||+|+ ||.+....+.+++.+.. +.|.|++|||. +++.+++|+.+. .++.+.+ +...+++.....
T Consensus 154 IVDEiHel~~sKRG~~Lsl~LeRL~~l~~---~~qRIGLSATV~~~~~varfL~g~~~~~~Iv~~~~~k~~~i~v~~p~~ 230 (814)
T COG1201 154 IVDEIHALAESKRGVQLALSLERLRELAG---DFQRIGLSATVGPPEEVAKFLVGFGDPCEIVDVSAAKKLEIKVISPVE 230 (814)
T ss_pred EeehhhhhhccccchhhhhhHHHHHhhCc---ccEEEeehhccCCHHHHHHHhcCCCCceEEEEcccCCcceEEEEecCC
Confidence 9999997 88888888888887765 78999999999 999999999754 2344433 333343333322
Q ss_pred hhhhhhhhHHHHHHHHhhhhhhhccccCCCcEEEeCCccccccc
Q psy496 248 VLNMTRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQE 291 (319)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~v~~ 291 (319)
.....+. ....+.....+. ..+ ...+|||+|||..+-.+
T Consensus 231 ~~~~~~~-~~~~~~~~i~~~--v~~--~~ttLIF~NTR~~aE~l 269 (814)
T COG1201 231 DLIYDEE-LWAALYERIAEL--VKK--HRTTLIFTNTRSGAERL 269 (814)
T ss_pred ccccccc-hhHHHHHHHHHH--Hhh--cCcEEEEEeChHHHHHH
Confidence 2111111 112222223333 222 45899999999876433
No 19
>KOG0342|consensus
Probab=99.93 E-value=1.8e-26 Score=215.01 Aligned_cols=229 Identities=17% Similarity=0.161 Sum_probs=154.9
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCC--CCccEEEEecccHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNR--GSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~--~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
.+++|+++||+++.|+|+++.+. ||||||.||++|.++.+..... .....+++++||||||.|++...
T Consensus 105 MT~VQ~~ti~pll~gkDvl~~AK----------TGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~ea 174 (543)
T KOG0342|consen 105 MTPVQQKTIPPLLEGKDVLAAAK----------TGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEA 174 (543)
T ss_pred hhHHHHhhcCccCCCccceeeec----------cCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHH
Confidence 67999999999999998888877 9999999999999998865431 23456777779999999999988
Q ss_pred HHHhccccCCCCceEEEEEec-----ccccCCCCceEEEECchHHHHHHhcCCC--CCCccEEEEecccccccchhHHHH
Q psy496 123 AQERDEQCGRPGSSVGYQIRL-----EKELPRKRGSILYCTAGILPEVMQSDPI--LSGVSHIVMDEIHERSMISDFLLA 195 (319)
Q Consensus 123 ~~~~~~~~~~~g~~vg~~~~~-----~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~--l~~v~~vViDEah~~~~~~~~~~~ 195 (319)
.+++.... +..++..+.+ +.......++|+|+|||||++++.+.+. +.+++++|+||||+ -+.++|-.+
T Consensus 175 k~Ll~~h~---~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADr-lLd~GF~~d 250 (543)
T KOG0342|consen 175 KELLKYHE---SITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADR-LLDIGFEED 250 (543)
T ss_pred HHHHhhCC---CcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchh-hhhcccHHH
Confidence 88765442 3333333322 2222224789999999999999976654 67889999999995 466677777
Q ss_pred HHHhhhccccCceEEEecccc--ChhhHhhh-hCCCCE-EEeCCcccc-----ceeeeehhhhhhhhhhHHHHHHHHhhh
Q psy496 196 ILKDVTDKRKDLKLILMSATL--NAEKFSQF-FGGAPI-LHIPGFTYP-----VQEYYLEDVLNMTRKDLKLILMSATLN 266 (319)
Q Consensus 196 ~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~-l~~~~~-i~~~~r~~~-----v~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (319)
+.+++..++..+|.++||||. -++++++- +...++ +.......+ ++..|.-.. ...+..+.-..+.
T Consensus 251 i~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d~~~v~~~d~~~~~The~l~Qgyvv~~-----~~~~f~ll~~~LK 325 (543)
T KOG0342|consen 251 VEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRDPVFVNVDDGGERETHERLEQGYVVAP-----SDSRFSLLYTFLK 325 (543)
T ss_pred HHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCCceEeecCCCCCcchhhcccceEEecc-----ccchHHHHHHHHH
Confidence 777777788899999999999 56677764 333333 444332222 333343332 1112111111111
Q ss_pred hhhhccccCCCcEEEeCCccccccccchHhHHH
Q psy496 267 AEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLN 299 (319)
Q Consensus 267 ~~~~~~~~~g~~LVFlp~R~~~v~~~~~~~~~~ 299 (319)
. + .....++||++|-. -+.|..++++
T Consensus 326 k---~-~~~~KiiVF~sT~~---~vk~~~~lL~ 351 (543)
T KOG0342|consen 326 K---N-IKRYKIIVFFSTCM---SVKFHAELLN 351 (543)
T ss_pred H---h-cCCceEEEEechhh---HHHHHHHHHh
Confidence 1 1 11378999999863 3455555555
No 20
>KOG0335|consensus
Probab=99.93 E-value=2.2e-26 Score=216.98 Aligned_cols=268 Identities=18% Similarity=0.140 Sum_probs=168.2
Q ss_pred ccchhhhhhhhcccCCCccccccccc-------cchHHHhc--cCCccccccccccchhhHHHHHHhhhcCCCCCcEEEe
Q psy496 5 YAQSITYRLKEDLAGCGKTTQVPQFI-------LDDEIARN--RGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIY 75 (319)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~ 75 (319)
++.+|||+++.+++.......+|..| +++-.... +..-..++|+|+.+||.+..|++++++++
T Consensus 48 ~~~~~nfd~~~~i~v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~~~~ptpvQk~sip~i~~Grdl~acAq-------- 119 (482)
T KOG0335|consen 48 ISTGINFDKYNDIPVKVSGRDVPPHIPTFDEAILGEALAGNIKRSGYTKPTPVQKYSIPIISGGRDLMACAQ-------- 119 (482)
T ss_pred cchhhccCCccceeeeccCCccCCCcccccccchhHHHhhccccccccCCCcceeeccceeecCCceEEEcc--------
Confidence 56789999999998655555554433 22222111 12234457999999999998888655555
Q ss_pred cCCCCCccchhhHHHHHHHHHhCC--------CCccEEEEecccHHHHHHHHHHHHHHhcccc-----CCCCceEEEEEe
Q psy496 76 TSTGCGKTTQVPQFILDDEIARNR--------GSECCIMVTQPRRISAIAIAERVAQERDEQC-----GRPGSSVGYQIR 142 (319)
Q Consensus 76 apTGSGKT~~~~l~il~~l~~~~~--------~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~-----~~~g~~vg~~~~ 142 (319)
||||||.+|++|++..+...+. ....++++++||||||.|++++..+...... .|+|...+
T Consensus 120 --TGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~---- 193 (482)
T KOG0335|consen 120 --TGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLG---- 193 (482)
T ss_pred --CCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchh----
Confidence 9999999999999999876532 1235666666999999999999888754332 12222222
Q ss_pred cccccCCCCceEEEECchHHHHHH-hcCCCCCCccEEEEecccccccc-hhHHHHHHHhhhccc----cCceEEEecccc
Q psy496 143 LEKELPRKRGSILYCTAGILPEVM-QSDPILSGVSHIVMDEIHERSMI-SDFLLAILKDVTDKR----KDLKLILMSATL 216 (319)
Q Consensus 143 ~~~~~~~~~~~Iiv~Tpg~ll~~l-~~~~~l~~v~~vViDEah~~~~~-~~~~~~~l~~~~~~~----~~~qiv~lSAT~ 216 (319)
.........++|+|+|||+|.+++ .....|++++++||||||++ ++ ++|...+-+.+.... ...|.++||||+
T Consensus 194 ~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrM-lD~mgF~p~Ir~iv~~~~~~~~~~~qt~mFSAtf 272 (482)
T KOG0335|consen 194 AQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRM-LDEMGFEPQIRKIVEQLGMPPKNNRQTLLFSATF 272 (482)
T ss_pred hhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHh-hhhccccccHHHHhcccCCCCccceeEEEEeccC
Confidence 112222346899999999999999 45556999999999999974 44 666666655554422 367999999999
Q ss_pred --ChhhHhhhhC-CCCEEEeC---Ccc-ccceeeeehhhhhhhhhhHHHHHHHHhhhhh---hhccccCCCcEEEeCCcc
Q psy496 217 --NAEKFSQFFG-GAPILHIP---GFT-YPVQEYYLEDVLNMTRKDLKLILMSATLNAE---KFSQFFGGAPILHIPGFT 286 (319)
Q Consensus 217 --~~~~l~~~l~-~~~~i~~~---~r~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~g~~LVFlp~R~ 286 (319)
+.+.++.+|- +..++..- ++. ..+...++.. ...+.+..++....... .........++|||.+.+
T Consensus 273 p~~iq~l~~~fl~~~yi~laV~rvg~~~~ni~q~i~~V----~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~ 348 (482)
T KOG0335|consen 273 PKEIQRLAADFLKDNYIFLAVGRVGSTSENITQKILFV----NEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKR 348 (482)
T ss_pred ChhhhhhHHHHhhccceEEEEeeeccccccceeEeeee----cchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccc
Confidence 5555666553 32332221 222 2222222211 13344444443333221 111111337999999987
Q ss_pred ccccc
Q psy496 287 YPVQE 291 (319)
Q Consensus 287 ~~v~~ 291 (319)
.+-++
T Consensus 349 ~~d~l 353 (482)
T KOG0335|consen 349 GADEL 353 (482)
T ss_pred hhhHH
Confidence 66433
No 21
>KOG0340|consensus
Probab=99.93 E-value=1.4e-26 Score=208.27 Aligned_cols=175 Identities=21% Similarity=0.239 Sum_probs=127.6
Q ss_pred cccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccE
Q psy496 25 QVPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECC 104 (319)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~ 104 (319)
++..|+-+..-+-.-+ +++|+|..+||.|+.|+|+++++. ||||||++|.+|+++++.....+..+.
T Consensus 13 Gl~~Wlve~l~~l~i~---~pTpiQ~~cIpkILeGrdcig~Ak----------TGsGKT~AFaLPil~rLsedP~giFal 79 (442)
T KOG0340|consen 13 GLSPWLVEQLKALGIK---KPTPIQQACIPKILEGRDCIGCAK----------TGSGKTAAFALPILNRLSEDPYGIFAL 79 (442)
T ss_pred CccHHHHHHHHHhcCC---CCCchHhhhhHHHhcccccccccc----------cCCCcchhhhHHHHHhhccCCCcceEE
Confidence 4556655554443332 367999999999999999999999 999999999999999998877766666
Q ss_pred EEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEe-cccccCCCCceEEEECchHHHHHHhcCC-----CCCCccEE
Q psy496 105 IMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIR-LEKELPRKRGSILYCTAGILPEVMQSDP-----ILSGVSHI 178 (319)
Q Consensus 105 vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~-~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~-----~l~~v~~v 178 (319)
|+. ||||||.|+++++...-..........+|+... ......+++.|++++|||++-+++.++. .+++++++
T Consensus 80 vlT--PTrELA~QiaEQF~alGk~l~lK~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkfl 157 (442)
T KOG0340|consen 80 VLT--PTRELALQIAEQFIALGKLLNLKVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFL 157 (442)
T ss_pred Eec--chHHHHHHHHHHHHHhcccccceEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceeeE
Confidence 666 999999999999877633221111222232111 3333445789999999999999997663 38999999
Q ss_pred EEecccccccchhHHHHHHHhhh-ccccCceEEEecccc
Q psy496 179 VMDEIHERSMISDFLLAILKDVT-DKRKDLKLILMSATL 216 (319)
Q Consensus 179 ViDEah~~~~~~~~~~~~l~~~~-~~~~~~qiv~lSAT~ 216 (319)
|+||||. +....+...++.+. ..++.+|.++||||+
T Consensus 158 VlDEADr--vL~~~f~d~L~~i~e~lP~~RQtLlfSATi 194 (442)
T KOG0340|consen 158 VLDEADR--VLAGCFPDILEGIEECLPKPRQTLLFSATI 194 (442)
T ss_pred Eecchhh--hhccchhhHHhhhhccCCCccceEEEEeeh
Confidence 9999997 33333344444443 356667999999999
No 22
>PRK02362 ski2-like helicase; Provisional
Probab=99.93 E-value=9.8e-26 Score=230.90 Aligned_cols=240 Identities=16% Similarity=0.138 Sum_probs=151.3
Q ss_pred cccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccE
Q psy496 25 QVPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECC 104 (319)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~ 104 (319)
++|..+.+.+-+.... +++|+|.++++... ..++|++++||||||||.++.+|+++.+..+ .+
T Consensus 7 ~lp~~~~~~l~~~g~~---~l~p~Q~~ai~~~~---------~~g~nvlv~APTGSGKTlia~lail~~l~~~-----~k 69 (737)
T PRK02362 7 PLPEGVIEFYEAEGIE---ELYPPQAEAVEAGL---------LDGKNLLAAIPTASGKTLIAELAMLKAIARG-----GK 69 (737)
T ss_pred CCCHHHHHHHHhCCCC---cCCHHHHHHHHHHH---------hCCCcEEEECCCcchHHHHHHHHHHHHHhcC-----Cc
Confidence 4676666544333222 35688999998622 1356799999999999999999999988532 37
Q ss_pred EEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc--ccCCCCceEEEECchHHHHHHhcCC-CCCCccEEEEe
Q psy496 105 IMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK--ELPRKRGSILYCTAGILPEVMQSDP-ILSGVSHIVMD 181 (319)
Q Consensus 105 vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~--~~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vViD 181 (319)
++++.|+|+||.|.++.+.+.. . . |..++......+ .......+|+|+||+++..+++... .+++++++|+|
T Consensus 70 al~i~P~raLa~q~~~~~~~~~-~-~---g~~v~~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViD 144 (737)
T PRK02362 70 ALYIVPLRALASEKFEEFERFE-E-L---GVRVGISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVD 144 (737)
T ss_pred EEEEeChHHHHHHHHHHHHHhh-c-C---CCEEEEEeCCcCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEE
Confidence 8888899999999999988642 1 1 434432211111 1111356899999999988886543 47899999999
Q ss_pred ccccccc--chhHHHHHHHhhhccccCceEEEecccc-ChhhHhhhhCCCCEEEeCCccccceeeeehh-hhhhhh--h-
Q psy496 182 EIHERSM--ISDFLLAILKDVTDKRKDLKLILMSATL-NAEKFSQFFGGAPILHIPGFTYPVQEYYLED-VLNMTR--K- 254 (319)
Q Consensus 182 Eah~~~~--~~~~~~~~l~~~~~~~~~~qiv~lSAT~-~~~~l~~~l~~~~~i~~~~r~~~v~~~~~~~-~~~~~~--~- 254 (319)
|+|..+- ....+...+..+....++.|+|++|||+ |++++++|++.. .+....|+.++....... ...... .
T Consensus 145 E~H~l~d~~rg~~le~il~rl~~~~~~~qii~lSATl~n~~~la~wl~~~-~~~~~~rpv~l~~~v~~~~~~~~~~~~~~ 223 (737)
T PRK02362 145 EVHLIDSANRGPTLEVTLAKLRRLNPDLQVVALSATIGNADELADWLDAE-LVDSEWRPIDLREGVFYGGAIHFDDSQRE 223 (737)
T ss_pred CccccCCCcchHHHHHHHHHHHhcCCCCcEEEEcccCCCHHHHHHHhCCC-cccCCCCCCCCeeeEecCCeecccccccc
Confidence 9997321 1123333444444455678999999999 999999999643 344455665554332110 000000 0
Q ss_pred ---hHHHHHHHHhhhhhhhccccCCCcEEEeCCccccccc
Q psy496 255 ---DLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQE 291 (319)
Q Consensus 255 ---~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~v~~ 291 (319)
...........+. .. .++++||||++|..+..+
T Consensus 224 ~~~~~~~~~~~~~~~~--~~--~~~~~LVF~~sr~~~~~~ 259 (737)
T PRK02362 224 VEVPSKDDTLNLVLDT--LE--EGGQCLVFVSSRRNAEGF 259 (737)
T ss_pred CCCccchHHHHHHHHH--HH--cCCCeEEEEeCHHHHHHH
Confidence 0001111111111 11 378999999999887544
No 23
>PRK01172 ski2-like helicase; Provisional
Probab=99.93 E-value=1.5e-25 Score=227.79 Aligned_cols=238 Identities=18% Similarity=0.147 Sum_probs=154.0
Q ss_pred cccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccE
Q psy496 25 QVPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECC 104 (319)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~ 104 (319)
.+|+.+.+. |+. ...+..++|.++++.+. .+++++++||||||||+++.+++++.+.... +
T Consensus 7 ~l~~~~~~~-~~~---~~~~l~~~Q~~ai~~l~----------~~~nvlv~apTGSGKTl~a~lail~~l~~~~-----k 67 (674)
T PRK01172 7 GYDDEFLNL-FTG---NDFELYDHQRMAIEQLR----------KGENVIVSVPTAAGKTLIAYSAIYETFLAGL-----K 67 (674)
T ss_pred CCCHHHHHH-Hhh---CCCCCCHHHHHHHHHHh----------cCCcEEEECCCCchHHHHHHHHHHHHHHhCC-----c
Confidence 356554443 232 22346788999998764 3567999999999999999999998876533 6
Q ss_pred EEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccccc--CCCCceEEEECchHHHHHHhcCCC-CCCccEEEEe
Q psy496 105 IMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKEL--PRKRGSILYCTAGILPEVMQSDPI-LSGVSHIVMD 181 (319)
Q Consensus 105 vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~--~~~~~~Iiv~Tpg~ll~~l~~~~~-l~~v~~vViD 181 (319)
++++.|+++||.|.++.+.+... . |..++......+.. .....+|+|+||+++..++...+. ++++++||+|
T Consensus 68 ~v~i~P~raLa~q~~~~~~~l~~--~---g~~v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViD 142 (674)
T PRK01172 68 SIYIVPLRSLAMEKYEELSRLRS--L---GMRVKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVAD 142 (674)
T ss_pred EEEEechHHHHHHHHHHHHHHhh--c---CCeEEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEe
Confidence 77778999999999998886422 1 45554333211111 113578999999999888866554 8999999999
Q ss_pred ccccccc--chhHHHHHHHhhhccccCceEEEecccc-ChhhHhhhhCCCCEEEeCCccccceeeeehhhhhhhhhhHHH
Q psy496 182 EIHERSM--ISDFLLAILKDVTDKRKDLKLILMSATL-NAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMTRKDLKL 258 (319)
Q Consensus 182 Eah~~~~--~~~~~~~~l~~~~~~~~~~qiv~lSAT~-~~~~l~~~l~~~~~i~~~~r~~~v~~~~~~~~~~~~~~~~~~ 258 (319)
|+|..+- ....+..++..+...+++.|+|++|||+ |.+++++|++. ..+....|+.|++...........+...+.
T Consensus 143 EaH~l~d~~rg~~le~ll~~~~~~~~~~riI~lSATl~n~~~la~wl~~-~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~ 221 (674)
T PRK01172 143 EIHIIGDEDRGPTLETVLSSARYVNPDARILALSATVSNANELAQWLNA-SLIKSNFRPVPLKLGILYRKRLILDGYERS 221 (674)
T ss_pred cchhccCCCccHHHHHHHHHHHhcCcCCcEEEEeCccCCHHHHHHHhCC-CccCCCCCCCCeEEEEEecCeeeecccccc
Confidence 9997431 1113334444444455678999999999 99999999964 456666777777643321110000000000
Q ss_pred -H-HHHHhhhhhhhccccCCCcEEEeCCccccccc
Q psy496 259 -I-LMSATLNAEKFSQFFGGAPILHIPGFTYPVQE 291 (319)
Q Consensus 259 -~-~~~~~~~~~~~~~~~~g~~LVFlp~R~~~v~~ 291 (319)
. ......+. . ..++++|||+++|..+.+.
T Consensus 222 ~~~~~~~i~~~--~--~~~~~vLVF~~sr~~~~~~ 252 (674)
T PRK01172 222 QVDINSLIKET--V--NDGGQVLVFVSSRKNAEDY 252 (674)
T ss_pred cccHHHHHHHH--H--hCCCcEEEEeccHHHHHHH
Confidence 0 11111110 1 1378999999999987554
No 24
>PTZ00110 helicase; Provisional
Probab=99.93 E-value=1.2e-25 Score=222.50 Aligned_cols=183 Identities=21% Similarity=0.134 Sum_probs=125.4
Q ss_pred ccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhC---CCCc
Q psy496 26 VPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARN---RGSE 102 (319)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~---~~~~ 102 (319)
+|+++.+......+. +++++|.++||.++.|+| ++++||||||||++|++|++..+.... .+..
T Consensus 137 l~~~l~~~l~~~g~~---~pt~iQ~~aip~~l~G~d----------vI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~g 203 (545)
T PTZ00110 137 FPDYILKSLKNAGFT---EPTPIQVQGWPIALSGRD----------MIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDG 203 (545)
T ss_pred CCHHHHHHHHHCCCC---CCCHHHHHHHHHHhcCCC----------EEEEeCCCChHHHHHHHHHHHHHHhcccccCCCC
Confidence 455554443333332 367899999999887544 677777999999999999998876432 1224
Q ss_pred cEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc-----ccCCCCceEEEECchHHHHHHhcC-CCCCCcc
Q psy496 103 CCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK-----ELPRKRGSILYCTAGILPEVMQSD-PILSGVS 176 (319)
Q Consensus 103 ~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~-----~~~~~~~~Iiv~Tpg~ll~~l~~~-~~l~~v~ 176 (319)
..+|+++||||||.|+.+.+.++.... +..+........ ......++|+|+|||+|++++... ..+++++
T Consensus 204 p~~LIL~PTreLa~Qi~~~~~~~~~~~----~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~ 279 (545)
T PTZ00110 204 PIVLVLAPTRELAEQIREQCNKFGASS----KIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVT 279 (545)
T ss_pred cEEEEECChHHHHHHHHHHHHHHhccc----CccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCc
Confidence 567888899999999998877764321 211211111110 111235689999999999999554 4589999
Q ss_pred EEEEecccccccchhHHHHHHHhhhccccCceEEEecccc--ChhhHhhhhC
Q psy496 177 HIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL--NAEKFSQFFG 226 (319)
Q Consensus 177 ~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~l~ 226 (319)
+|||||||.. +..++...+.+.+...+++.|++++|||+ ..+.+++.+.
T Consensus 280 ~lViDEAd~m-ld~gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l~~~l~ 330 (545)
T PTZ00110 280 YLVLDEADRM-LDMGFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSLARDLC 330 (545)
T ss_pred EEEeehHHhh-hhcchHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHHHHHHh
Confidence 9999999963 44555555555555667889999999999 4556666543
No 25
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=99.93 E-value=2.3e-25 Score=219.70 Aligned_cols=171 Identities=19% Similarity=0.177 Sum_probs=116.8
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhC-----CCCccEEEEecccHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARN-----RGSECCIMVTQPRRISAIAI 118 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~-----~~~~~~vl~~~Ptr~la~q~ 118 (319)
.++|+|.++||.++.| ++++++||||||||++|++|++.++.... .....+++++.|||+||.|+
T Consensus 143 ~ptpiQ~~aip~il~g----------~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi 212 (518)
T PLN00206 143 FPTPIQMQAIPAALSG----------RSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQV 212 (518)
T ss_pred CCCHHHHHHHHHHhcC----------CCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHH
Confidence 3578999999998764 45788888999999999999998875321 11345777777999999999
Q ss_pred HHHHHHHhccccCCCCceEEEEEeccc-----ccCCCCceEEEECchHHHHHHhc-CCCCCCccEEEEecccccccchhH
Q psy496 119 AERVAQERDEQCGRPGSSVGYQIRLEK-----ELPRKRGSILYCTAGILPEVMQS-DPILSGVSHIVMDEIHERSMISDF 192 (319)
Q Consensus 119 ~~~~~~~~~~~~~~~g~~vg~~~~~~~-----~~~~~~~~Iiv~Tpg~ll~~l~~-~~~l~~v~~vViDEah~~~~~~~~ 192 (319)
.+.+..+.... +..+.....+.. .....+.+|+|+|||+|.+++.. ...++++++||+||||.. ...++
T Consensus 213 ~~~~~~l~~~~----~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~m-l~~gf 287 (518)
T PLN00206 213 EDQAKVLGKGL----PFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCM-LERGF 287 (518)
T ss_pred HHHHHHHhCCC----CceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHH-hhcch
Confidence 88776653321 212111111111 11123578999999999999954 445999999999999973 23333
Q ss_pred HHHHHHhhhccccCceEEEecccc--ChhhHhhhhCCCCE
Q psy496 193 LLAILKDVTDKRKDLKLILMSATL--NAEKFSQFFGGAPI 230 (319)
Q Consensus 193 ~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~l~~~~~ 230 (319)
.....+.+... ++.|++++|||+ +.+.+++++...+.
T Consensus 288 ~~~i~~i~~~l-~~~q~l~~SATl~~~v~~l~~~~~~~~~ 326 (518)
T PLN00206 288 RDQVMQIFQAL-SQPQVLLFSATVSPEVEKFASSLAKDII 326 (518)
T ss_pred HHHHHHHHHhC-CCCcEEEEEeeCCHHHHHHHHHhCCCCE
Confidence 33333333333 467999999999 45677777765554
No 26
>KOG0348|consensus
Probab=99.93 E-value=7.3e-26 Score=212.61 Aligned_cols=235 Identities=23% Similarity=0.221 Sum_probs=147.2
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhC------CCCccEEEEecccHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARN------RGSECCIMVTQPRRISAIAI 118 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~------~~~~~~vl~~~Ptr~la~q~ 118 (319)
+|.+|.++||++++|+|++. .|+||||||++|++|+++.+.... .|+.+.|++ ||||||.|+
T Consensus 160 pTsVQkq~IP~lL~grD~lV----------~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALViv--PTREL~~Q~ 227 (708)
T KOG0348|consen 160 PTSVQKQAIPVLLEGRDALV----------RAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIV--PTRELALQI 227 (708)
T ss_pred cchHhhcchhhhhcCcceEE----------EcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEe--chHHHHHHH
Confidence 46899999999998777554 455999999999999999986533 344455555 999999999
Q ss_pred HHHHHHHhcccc-CCCCceEEEEEe-cccccCCCCceEEEECchHHHHHHhcCCC--CCCccEEEEecccccccchhHHH
Q psy496 119 AERVAQERDEQC-GRPGSSVGYQIR-LEKELPRKRGSILYCTAGILPEVMQSDPI--LSGVSHIVMDEIHERSMISDFLL 194 (319)
Q Consensus 119 ~~~~~~~~~~~~-~~~g~~vg~~~~-~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~--l~~v~~vViDEah~~~~~~~~~~ 194 (319)
++.+.++..... ...|..+|...+ .+.....++.+|+|+|||||++++++... ++.++|+|+||+|+ -+.+++-.
T Consensus 228 y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDr-lleLGfek 306 (708)
T KOG0348|consen 228 YETVQKLLKPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADR-LLELGFEK 306 (708)
T ss_pred HHHHHHHhcCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhH-HHhccchh
Confidence 999998866432 111333332222 22222234678999999999999977554 88999999999996 22333221
Q ss_pred ---HHHHhhh----------ccccCceEEEecccc--ChhhHhhh-hCCCCEEEeCCc-----------------c--cc
Q psy496 195 ---AILKDVT----------DKRKDLKLILMSATL--NAEKFSQF-FGGAPILHIPGF-----------------T--YP 239 (319)
Q Consensus 195 ---~~l~~~~----------~~~~~~qiv~lSAT~--~~~~l~~~-l~~~~~i~~~~r-----------------~--~~ 239 (319)
.+++.+. .+++..|.+++|||+ .+..+++. +.++..+..+.. + -+
T Consensus 307 dit~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~ 386 (708)
T KOG0348|consen 307 DITQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDK 386 (708)
T ss_pred hHHHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccc
Confidence 2222221 133457899999999 56777764 333222331100 0 01
Q ss_pred ceeeeehhhh----hhhhhhHHHHHHHHhhhhhhhccccCCCcEEEeCCccccccccch
Q psy496 240 VQEYYLEDVL----NMTRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYYL 294 (319)
Q Consensus 240 v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~v~~~~~ 294 (319)
++.+-.++.+ -...+.++.++....+...+. .+....++||+.++ ..|+-+|-
T Consensus 387 l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~~~k-~~~~qk~iVF~S~~-d~VeFHy~ 443 (708)
T KOG0348|consen 387 LDSFAIPEQLLQRYTVVPPKLRLVALAALLLNKVK-FEEKQKMIVFFSCS-DSVEFHYS 443 (708)
T ss_pred cccccCcHHhhhceEecCCchhHHHHHHHHHHHhh-hhhhceeEEEEech-hHHHHHHH
Confidence 1111111111 113567888766555554332 22255789999887 67788773
No 27
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=99.93 E-value=1.5e-25 Score=218.32 Aligned_cols=235 Identities=17% Similarity=0.116 Sum_probs=147.2
Q ss_pred ccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEE
Q psy496 26 VPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCI 105 (319)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~v 105 (319)
++..+.+......+.. ++|+|.++||.++.| ++++++||||||||++|.+|+++.+..... .+.+
T Consensus 11 l~~~l~~~l~~~g~~~---~t~iQ~~ai~~~l~g----------~dvi~~a~TGsGKT~a~~lpil~~l~~~~~--~~~~ 75 (460)
T PRK11776 11 LPPALLANLNELGYTE---MTPIQAQSLPAILAG----------KDVIAQAKTGSGKTAAFGLGLLQKLDVKRF--RVQA 75 (460)
T ss_pred CCHHHHHHHHHCCCCC---CCHHHHHHHHHHhcC----------CCEEEECCCCCcHHHHHHHHHHHHhhhccC--CceE
Confidence 4554444433332322 568999999998754 558888889999999999999998865433 3356
Q ss_pred EEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEe-----cccccCCCCceEEEECchHHHHHHhcC-CCCCCccEEE
Q psy496 106 MVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIR-----LEKELPRKRGSILYCTAGILPEVMQSD-PILSGVSHIV 179 (319)
Q Consensus 106 l~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~-----~~~~~~~~~~~Iiv~Tpg~ll~~l~~~-~~l~~v~~vV 179 (319)
+++.|||+||.|+++.+........ +..+..... ........+.+|+|+|||++.+++... ..++++++||
T Consensus 76 lil~PtreLa~Q~~~~~~~~~~~~~---~~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lV 152 (460)
T PRK11776 76 LVLCPTRELADQVAKEIRRLARFIP---NIKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLV 152 (460)
T ss_pred EEEeCCHHHHHHHHHHHHHHHhhCC---CcEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEE
Confidence 6666999999999988877643221 222221111 011111245789999999999999544 4589999999
Q ss_pred EecccccccchhHHHHHHHhhhccccCceEEEecccc--ChhhHhhhhCCCC-EEEeCCcc--ccceeeeehhhhhhhhh
Q psy496 180 MDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL--NAEKFSQFFGGAP-ILHIPGFT--YPVQEYYLEDVLNMTRK 254 (319)
Q Consensus 180 iDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~l~~~~-~i~~~~r~--~~v~~~~~~~~~~~~~~ 254 (319)
+||||.. +..++...+...+...+++.|++++|||+ +...++..+...+ .+.+.... ..++.+|.... ..
T Consensus 153 iDEad~~-l~~g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~i~~~~~~~~----~~ 227 (460)
T PRK11776 153 LDEADRM-LDMGFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVESTHDLPAIEQRFYEVS----PD 227 (460)
T ss_pred EECHHHH-hCcCcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEECcCCCCCCeeEEEEEeC----cH
Confidence 9999963 34444444445555566788999999999 4456666554433 34443322 22444443221 11
Q ss_pred hHHHHHHHHhhhhhhhccccCCCcEEEeCCccccc
Q psy496 255 DLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPV 289 (319)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~v 289 (319)
. +.......+ ....++++||||+++..+-
T Consensus 228 ~-k~~~l~~ll-----~~~~~~~~lVF~~t~~~~~ 256 (460)
T PRK11776 228 E-RLPALQRLL-----LHHQPESCVVFCNTKKECQ 256 (460)
T ss_pred H-HHHHHHHHH-----HhcCCCceEEEECCHHHHH
Confidence 1 111111111 1223678999999987653
No 28
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=99.92 E-value=5.1e-25 Score=214.26 Aligned_cols=236 Identities=17% Similarity=0.096 Sum_probs=147.0
Q ss_pred cccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCC----C
Q psy496 25 QVPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNR----G 100 (319)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~----~ 100 (319)
.+++.+.+.+.+..+.. ++++|.++||++++| ++++++||||||||++|.+|+++.+..... .
T Consensus 7 ~l~~~l~~~l~~~g~~~---pt~iQ~~ai~~il~g----------~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~ 73 (456)
T PRK10590 7 GLSPDILRAVAEQGYRE---PTPIQQQAIPAVLEG----------RDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGR 73 (456)
T ss_pred CCCHHHHHHHHHCCCCC---CCHHHHHHHHHHhCC----------CCEEEECCCCCcHHHHHHHHHHHHhhhcccccccC
Confidence 45555555554443433 668999999998764 457888889999999999999998865321 1
Q ss_pred CccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecc-----cccCCCCceEEEECchHHHHHHhcCC-CCCC
Q psy496 101 SECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLE-----KELPRKRGSILYCTAGILPEVMQSDP-ILSG 174 (319)
Q Consensus 101 ~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~-----~~~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~ 174 (319)
...++|+++|||+||.|+.+.+..+.... +..+....... ......+.+|+|+||++|++++.... .+++
T Consensus 74 ~~~~aLil~PtreLa~Qi~~~~~~~~~~~----~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~ 149 (456)
T PRK10590 74 RPVRALILTPTRELAAQIGENVRDYSKYL----NIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQ 149 (456)
T ss_pred CCceEEEEeCcHHHHHHHHHHHHHHhccC----CCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHcCCccccc
Confidence 23467888899999999999888765432 22221111110 01112357899999999999985544 5899
Q ss_pred ccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc--ChhhHhhhhCCCC-EEEeCCccc---cceeeeehhh
Q psy496 175 VSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL--NAEKFSQFFGGAP-ILHIPGFTY---PVQEYYLEDV 248 (319)
Q Consensus 175 v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~l~~~~-~i~~~~r~~---~v~~~~~~~~ 248 (319)
+++|||||||.. ...++...+...+...++..|++++|||+ +...+..++...+ .+.+..+.. .+..++...
T Consensus 150 v~~lViDEah~l-l~~~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~~i~~~~~~~~~~~i~~~~~~~- 227 (456)
T PRK10590 150 VEILVLDEADRM-LDMGFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFV- 227 (456)
T ss_pred ceEEEeecHHHH-hccccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCeEEEEecccccccceeEEEEEc-
Confidence 999999999963 33344444444455566778999999999 3456666554433 344433221 222222211
Q ss_pred hhhhhhhHHHHHHHHhhhhhhhccccCCCcEEEeCCcccc
Q psy496 249 LNMTRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYP 288 (319)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~ 288 (319)
+...+..++... +......++|||++++..+
T Consensus 228 ----~~~~k~~~l~~l-----~~~~~~~~~lVF~~t~~~~ 258 (456)
T PRK10590 228 ----DKKRKRELLSQM-----IGKGNWQQVLVFTRTKHGA 258 (456)
T ss_pred ----CHHHHHHHHHHH-----HHcCCCCcEEEEcCcHHHH
Confidence 111111111111 1112256899999998765
No 29
>KOG0345|consensus
Probab=99.92 E-value=9.2e-25 Score=202.63 Aligned_cols=259 Identities=18% Similarity=0.140 Sum_probs=166.1
Q ss_pred ccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhC-CC--CccE
Q psy496 28 QFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARN-RG--SECC 104 (319)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~-~~--~~~~ 104 (319)
.|+.+..-+..|+. .||+|..+||.++.++| |++-|+||||||+||++|+++.+..+. +. .+.-
T Consensus 15 ~~l~~~l~~~GF~~---mTpVQa~tIPlll~~KD----------VvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vg 81 (567)
T KOG0345|consen 15 PWLLEALDESGFEK---MTPVQAATIPLLLKNKD----------VVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVG 81 (567)
T ss_pred HHHHHHHHhcCCcc---cCHHHHhhhHHHhcCCc----------eEEEcCCCCCchhhHHHHHHHHHHhhccCCCcccee
Confidence 45544433333433 67999999999886555 667777999999999999999885433 22 2346
Q ss_pred EEEecccHHHHHHHHHHHHHHhcccc-CCCCceEEEEEeccc--ccCCCCceEEEECchHHHHHHhc-CCC--CCCccEE
Q psy496 105 IMVTQPRRISAIAIAERVAQERDEQC-GRPGSSVGYQIRLEK--ELPRKRGSILYCTAGILPEVMQS-DPI--LSGVSHI 178 (319)
Q Consensus 105 vl~~~Ptr~la~q~~~~~~~~~~~~~-~~~g~~vg~~~~~~~--~~~~~~~~Iiv~Tpg~ll~~l~~-~~~--l~~v~~v 178 (319)
.++++||||||.|+.+....+..... ......+|...-.++ ....++++|+|+|||||.++++. ... +.+++++
T Consensus 82 alIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~L 161 (567)
T KOG0345|consen 82 ALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEIL 161 (567)
T ss_pred EEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceE
Confidence 77778999999999886655543311 000222332111111 11124678999999999999965 333 4599999
Q ss_pred EEecccccccchhHHHHHHHhhhccccCceEEEecccc--ChhhHhhh-hCCCCEEEeCCcc---cc--ceeeeehhhhh
Q psy496 179 VMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL--NAEKFSQF-FGGAPILHIPGFT---YP--VQEYYLEDVLN 250 (319)
Q Consensus 179 ViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~-l~~~~~i~~~~r~---~~--v~~~~~~~~~~ 250 (319)
|+||||+ -+.+++...+..++..+++.+|.=+||||. .++++.+. +.++.-+.+.... .| +..+|....
T Consensus 162 VLDEADr-LldmgFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~v~~-- 238 (567)
T KOG0345|consen 162 VLDEADR-LLDMGFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLRNPVRVSVKEKSKSATPSSLALEYLVCE-- 238 (567)
T ss_pred EecchHh-HhcccHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhccCceeeeecccccccCchhhcceeeEec--
Confidence 9999995 477778888888888888899999999999 56677765 4454445554332 34 667777552
Q ss_pred hhhhhHHH-HHHHHhhhhhhhccccCCCcEEEeCCccccccccc--hHhHHHHhHhhccccCCCC
Q psy496 251 MTRKDLKL-ILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYY--LEDVLNMTRTLKRSETQQY 312 (319)
Q Consensus 251 ~~~~~~~~-~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~v~~~~--~~~~~~~~~~~~~~~~~~~ 312 (319)
+..+. .+++...+ ...+.++||-||-. +|+-.| ++..+.....+...|-...
T Consensus 239 ---a~eK~~~lv~~L~~------~~~kK~iVFF~TCa-sVeYf~~~~~~~l~~~~i~~iHGK~~q 293 (567)
T KOG0345|consen 239 ---ADEKLSQLVHLLNN------NKDKKCIVFFPTCA-SVEYFGKLFSRLLKKREIFSIHGKMSQ 293 (567)
T ss_pred ---HHHHHHHHHHHHhc------cccccEEEEecCcc-hHHHHHHHHHHHhCCCcEEEecchhcc
Confidence 33333 23333222 12578999998852 333322 4444455555555554443
No 30
>KOG0326|consensus
Probab=99.92 E-value=6.3e-25 Score=195.21 Aligned_cols=214 Identities=18% Similarity=0.166 Sum_probs=150.5
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
+.|+|+++||..+.|+|+++.+. .|+|||.+|.+|+++.+.......++.|++ ||||||.|..+...+
T Consensus 108 PSPiQeesIPiaLtGrdiLaRaK----------NGTGKT~a~~IP~Lekid~~~~~IQ~~ilV--PtrelALQtSqvc~~ 175 (459)
T KOG0326|consen 108 PSPIQEESIPIALTGRDILARAK----------NGTGKTAAYCIPVLEKIDPKKNVIQAIILV--PTRELALQTSQVCKE 175 (459)
T ss_pred CCCccccccceeecchhhhhhcc----------CCCCCccceechhhhhcCccccceeEEEEe--ecchhhHHHHHHHHH
Confidence 66899999999999999999999 999999999999999998877666777777 999999998775555
Q ss_pred HhccccCCCCceE----EEE-EecccccCCCCceEEEECchHHHHHHhcCC-CCCCccEEEEecccccccchhHHHHHHH
Q psy496 125 ERDEQCGRPGSSV----GYQ-IRLEKELPRKRGSILYCTAGILPEVMQSDP-ILSGVSHIVMDEIHERSMISDFLLAILK 198 (319)
Q Consensus 125 ~~~~~~~~~g~~v----g~~-~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vViDEah~~~~~~~~~~~~l~ 198 (319)
+.... |..+ |.. .+.+-.......+++|+||||++++...+. .+++...+|+||||.. +..++...+-+
T Consensus 176 lskh~----~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKl-Ls~~F~~~~e~ 250 (459)
T KOG0326|consen 176 LSKHL----GIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKL-LSVDFQPIVEK 250 (459)
T ss_pred Hhccc----CeEEEEecCCcccccceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhh-hchhhhhHHHH
Confidence 43221 2111 111 111111123467899999999999996554 5999999999999972 55556655555
Q ss_pred hhhccccCceEEEecccc--ChhhHh-hhhCCCCEEEeCCcc--ccceeeeehhhhhhhhhhHHHHHHHHhhhhhhhccc
Q psy496 199 DVTDKRKDLKLILMSATL--NAEKFS-QFFGGAPILHIPGFT--YPVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQF 273 (319)
Q Consensus 199 ~~~~~~~~~qiv~lSAT~--~~~~l~-~~l~~~~~i~~~~r~--~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (319)
.+.-++++.|++++|||+ .+..+. +++.++-.++.-... ..|..+|.-. .+..+....++.+.. .
T Consensus 251 li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~INLM~eLtl~GvtQyYafV-----~e~qKvhCLntLfsk-----L 320 (459)
T KOG0326|consen 251 LISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEINLMEELTLKGVTQYYAFV-----EERQKVHCLNTLFSK-----L 320 (459)
T ss_pred HHHhCCccceeeEEecccchhHHHHHHHhccCcceeehhhhhhhcchhhheeee-----chhhhhhhHHHHHHH-----h
Confidence 566688899999999999 455554 466665566664433 3455555432 222333344444333 1
Q ss_pred cCCCcEEEeCCc
Q psy496 274 FGGAPILHIPGF 285 (319)
Q Consensus 274 ~~g~~LVFlp~R 285 (319)
.-.+++|||++.
T Consensus 321 qINQsIIFCNS~ 332 (459)
T KOG0326|consen 321 QINQSIIFCNST 332 (459)
T ss_pred cccceEEEeccc
Confidence 245789999985
No 31
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=1.2e-24 Score=209.98 Aligned_cols=191 Identities=15% Similarity=0.127 Sum_probs=124.5
Q ss_pred cccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCC-----
Q psy496 25 QVPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNR----- 99 (319)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~----- 99 (319)
+++..+.+...+..+.. ++++|.++||.++.|+| ++++||||||||++|++|+++.+.....
T Consensus 14 ~l~~~l~~~l~~~g~~~---pt~iQ~~aip~il~g~d----------vi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~ 80 (423)
T PRK04837 14 ALHPQVVEALEKKGFHN---CTPIQALALPLTLAGRD----------VAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRK 80 (423)
T ss_pred CCCHHHHHHHHHCCCCC---CCHHHHHHHHHHhCCCc----------EEEECCCCchHHHHHHHHHHHHHHhcccccccc
Confidence 45655555544433332 57899999999887654 7778889999999999999998864321
Q ss_pred CCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc-----ccCCCCceEEEECchHHHHHHhcC-CCCC
Q psy496 100 GSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK-----ELPRKRGSILYCTAGILPEVMQSD-PILS 173 (319)
Q Consensus 100 ~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~-----~~~~~~~~Iiv~Tpg~ll~~l~~~-~~l~ 173 (319)
....++++++|||+||.|+++.+..+.... |..++....... .....+.+|+|+|||++.+++... ..++
T Consensus 81 ~~~~~~lil~PtreLa~Qi~~~~~~l~~~~----~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~ 156 (423)
T PRK04837 81 VNQPRALIMAPTRELAVQIHADAEPLAQAT----GLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLG 156 (423)
T ss_pred cCCceEEEECCcHHHHHHHHHHHHHHhccC----CceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccc
Confidence 123578888899999999988776654322 334432222111 111235689999999999999544 4589
Q ss_pred CccEEEEecccccccchhHHHHHHHhhhccc--cCceEEEecccc--ChhhHh-hhhCCCCEEEe
Q psy496 174 GVSHIVMDEIHERSMISDFLLAILKDVTDKR--KDLKLILMSATL--NAEKFS-QFFGGAPILHI 233 (319)
Q Consensus 174 ~v~~vViDEah~~~~~~~~~~~~l~~~~~~~--~~~qiv~lSAT~--~~~~l~-~~l~~~~~i~~ 233 (319)
+++++|+||||.. ...++...+...+...+ ...+.+++|||+ +...+. .++.+...+.+
T Consensus 157 ~v~~lViDEad~l-~~~~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~~p~~i~v 220 (423)
T PRK04837 157 AIQVVVLDEADRM-FDLGFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHMNNPEYVEV 220 (423)
T ss_pred cccEEEEecHHHH-hhcccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHCCCCEEEEE
Confidence 9999999999973 23333333322222232 345678999999 334444 35544444444
No 32
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.92 E-value=3.8e-24 Score=214.20 Aligned_cols=250 Identities=22% Similarity=0.274 Sum_probs=157.2
Q ss_pred cccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHH---------HHH-hCCCCccEEEEecccHHHHH
Q psy496 47 VTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDD---------EIA-RNRGSECCIMVTQPRRISAI 116 (319)
Q Consensus 47 ~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~---------l~~-~~~~~~~~vl~~~Ptr~la~ 116 (319)
.++-..++.-. .++++....++++++++|+||||||++++.+++.. +.. ........+++++|||+||.
T Consensus 158 ~~~l~~~~~~i-Q~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~ 236 (675)
T PHA02653 158 KIPLASLQPDV-QLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVR 236 (675)
T ss_pred cccCCchhHHH-HHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHH
Confidence 44444443332 24566666678889999999999999977555432 211 01222458999999999999
Q ss_pred HHHHHHHHHhccccCCCCceEEEEEeccccc------CCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccch
Q psy496 117 AIAERVAQERDEQCGRPGSSVGYQIRLEKEL------PRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMIS 190 (319)
Q Consensus 117 q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~------~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~ 190 (319)
|+..++.+..+... ..|..+. ++.+... .....+|+++|++. ..+.|+++++|||||||+|....
T Consensus 237 qi~~~i~~~vg~~~-~~g~~v~--v~~Gg~~~~~~~t~~k~~~Ilv~T~~L------~l~~L~~v~~VVIDEaHEr~~~~ 307 (675)
T PHA02653 237 LHSITLLKSLGFDE-IDGSPIS--LKYGSIPDELINTNPKPYGLVFSTHKL------TLNKLFDYGTVIIDEVHEHDQIG 307 (675)
T ss_pred HHHHHHHHHhCccc-cCCceEE--EEECCcchHHhhcccCCCCEEEEeCcc------cccccccCCEEEccccccCccch
Confidence 99998887665321 0122232 3322221 11245799999873 22457899999999999998888
Q ss_pred hHHHHHHHhhhccccCceEEEecccc--ChhhHhhhhCCCCEEEeCCcc-ccceeeeehhhhhhh-hhh----HHHHHHH
Q psy496 191 DFLLAILKDVTDKRKDLKLILMSATL--NAEKFSQFFGGAPILHIPGFT-YPVQEYYLEDVLNMT-RKD----LKLILMS 262 (319)
Q Consensus 191 ~~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~l~~~~~i~~~~r~-~~v~~~~~~~~~~~~-~~~----~~~~~~~ 262 (319)
|.++..++..... ..|+++||||+ +.+.+.+|+++++.+.++++. +|++++|........ ... .+.....
T Consensus 308 DllL~llk~~~~~--~rq~ILmSATl~~dv~~l~~~~~~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~ 385 (675)
T PHA02653 308 DIIIAVARKHIDK--IRSLFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVT 385 (675)
T ss_pred hHHHHHHHHhhhh--cCEEEEEccCCcHhHHHHHHHhcCCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHH
Confidence 8888888755432 24899999999 567888999999999999985 999999875431100 000 0111111
Q ss_pred HhhhhhhhccccCCCcEEEeCCcccccccc-chHhHHHHhHhhccccCCC
Q psy496 263 ATLNAEKFSQFFGGAPILHIPGFTYPVQEY-YLEDVLNMTRTLKRSETQQ 311 (319)
Q Consensus 263 ~~~~~~~~~~~~~g~~LVFlp~R~~~v~~~-~~~~~~~~~~~~~~~~~~~ 311 (319)
.... .....++++|||+||+..+-+.. .++.......+++++|.++
T Consensus 386 ~L~~---~~~~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Ls 432 (675)
T PHA02653 386 ALKK---YTPPKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVP 432 (675)
T ss_pred HHHH---hhcccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcC
Confidence 1111 11112578999999987653321 1211111246777777665
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=99.92 E-value=6.3e-25 Score=223.81 Aligned_cols=193 Identities=16% Similarity=0.155 Sum_probs=128.5
Q ss_pred ccccccccccchHHHhccCCc-cccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCC
Q psy496 22 KTTQVPQFILDDEIARNRGSE-CCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRG 100 (319)
Q Consensus 22 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~ 100 (319)
....+|.++.++..+.+.... .+++++|.++||.+++|+ |++++||||||||++|.+|+++.+....
T Consensus 13 ~~~~~~~~l~~~l~~~L~~~g~~~p~~~Q~~ai~~il~G~----------nvvv~apTGSGKTla~~LPiL~~l~~~~-- 80 (742)
T TIGR03817 13 RTAPWPAWAHPDVVAALEAAGIHRPWQHQARAAELAHAGR----------HVVVATGTASGKSLAYQLPVLSALADDP-- 80 (742)
T ss_pred ccCCCCCcCCHHHHHHHHHcCCCcCCHHHHHHHHHHHCCC----------CEEEECCCCCcHHHHHHHHHHHHHhhCC--
Confidence 334556555443333332221 236789999999987654 4778888999999999999999986532
Q ss_pred CccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccc------cCCCCceEEEECchHHHHHHhc-C----
Q psy496 101 SECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKE------LPRKRGSILYCTAGILPEVMQS-D---- 169 (319)
Q Consensus 101 ~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~------~~~~~~~Iiv~Tpg~ll~~l~~-~---- 169 (319)
..++|++.||||||.|+.+.+.++. .. +..++ ...++. ...++++|+++||+++...+.. .
T Consensus 81 -~~~aL~l~PtraLa~q~~~~l~~l~--~~---~i~v~--~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~ 152 (742)
T TIGR03817 81 -RATALYLAPTKALAADQLRAVRELT--LR---GVRPA--TYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSHARWA 152 (742)
T ss_pred -CcEEEEEcChHHHHHHHHHHHHHhc--cC---CeEEE--EEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccchhHHH
Confidence 4578888899999999999888764 11 22332 111111 1124578999999998754422 1
Q ss_pred CCCCCccEEEEeccccc-c---cchhHHHHHHHhhhc-cccCceEEEecccc-ChhhHhhhhCCCCEEEeC
Q psy496 170 PILSGVSHIVMDEIHER-S---MISDFLLAILKDVTD-KRKDLKLILMSATL-NAEKFSQFFGGAPILHIP 234 (319)
Q Consensus 170 ~~l~~v~~vViDEah~~-~---~~~~~~~~~l~~~~~-~~~~~qiv~lSAT~-~~~~l~~~l~~~~~i~~~ 234 (319)
..++++++|||||+|.. + .+...++.+++.+.. .+.+.|++++|||+ |+..+++++.+.+...++
T Consensus 153 ~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~~~~~~l~g~~~~~i~ 223 (742)
T TIGR03817 153 RFLRRLRYVVIDECHSYRGVFGSHVALVLRRLRRLCARYGASPVFVLASATTADPAAAASRLIGAPVVAVT 223 (742)
T ss_pred HHHhcCCEEEEeChhhccCccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHHHHHHHHcCCCeEEEC
Confidence 23789999999999972 2 222234444444433 34568999999999 888888776655554443
No 34
>KOG0952|consensus
Probab=99.92 E-value=9.5e-25 Score=218.01 Aligned_cols=239 Identities=16% Similarity=0.160 Sum_probs=161.9
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhC-----CCCccEEEEecccHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARN-----RGSECCIMVTQPRRISAIAIA 119 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~-----~~~~~~vl~~~Ptr~la~q~~ 119 (319)
.-.+|..++|.. -..|.|.+||||||||||..+++.|++.+.... .....+|+|++|+++||..+.
T Consensus 111 fN~iQS~vFp~a---------Y~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~ 181 (1230)
T KOG0952|consen 111 FNRIQSEVFPVA---------YKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMV 181 (1230)
T ss_pred HHHHHHHhhhhh---------hcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHH
Confidence 346788888774 235689999999999999999999999886421 123569999999999999999
Q ss_pred HHHHHHhccccCCCCceEEEEEecccccC---CCCceEEEECchHH---HHHHhcCC-CCCCccEEEEecccc----ccc
Q psy496 120 ERVAQERDEQCGRPGSSVGYQIRLEKELP---RKRGSILYCTAGIL---PEVMQSDP-ILSGVSHIVMDEIHE----RSM 188 (319)
Q Consensus 120 ~~~~~~~~~~~~~~g~~vg~~~~~~~~~~---~~~~~Iiv~Tpg~l---l~~l~~~~-~l~~v~~vViDEah~----~~~ 188 (319)
+.|.+.+... |..++- ..++.... -.+++|+|+||+.. .+....+. .++.+++|||||+|. ||+
T Consensus 182 ~~~~kkl~~~----gi~v~E-LTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGp 256 (1230)
T KOG0952|consen 182 DKFSKKLAPL----GISVRE-LTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGP 256 (1230)
T ss_pred HHHhhhcccc----cceEEE-ecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCcccc
Confidence 9998876643 444441 11111111 24789999999754 34443332 378899999999996 777
Q ss_pred chhHHHHHHHhhhc-cccCceEEEecccc-ChhhHhhhhCCC---CEEEeCCccccc--eeeeehhhhhhhhhhHHHHHH
Q psy496 189 ISDFLLAILKDVTD-KRKDLKLILMSATL-NAEKFSQFFGGA---PILHIPGFTYPV--QEYYLEDVLNMTRKDLKLILM 261 (319)
Q Consensus 189 ~~~~~~~~l~~~~~-~~~~~qiv~lSAT~-~~~~l~~~l~~~---~~i~~~~r~~~v--~~~~~~~~~~~~~~~~~~~~~ 261 (319)
..+.+.++..+... ....+|+|++|||+ |.+++++|++.+ .+++++++..|+ +..+...... .+......+-
T Consensus 257 vlEtiVaRtlr~vessqs~IRivgLSATlPN~eDvA~fL~vn~~~glfsFd~~yRPvpL~~~~iG~k~~-~~~~~~~~~d 335 (1230)
T KOG0952|consen 257 VLETIVARTLRLVESSQSMIRIVGLSATLPNYEDVARFLRVNPYAGLFSFDQRYRPVPLTQGFIGIKGK-KNRQQKKNID 335 (1230)
T ss_pred hHHHHHHHHHHHHHhhhhheEEEEeeccCCCHHHHHHHhcCCCccceeeecccccccceeeeEEeeecc-cchhhhhhHH
Confidence 77777766665443 34578999999999 999999999864 467777766555 4444433222 1111222222
Q ss_pred HHhhhhhhhccccCCCcEEEeCCcccccccc-chHhHH
Q psy496 262 SATLNAEKFSQFFGGAPILHIPGFTYPVQEY-YLEDVL 298 (319)
Q Consensus 262 ~~~~~~~~~~~~~~g~~LVFlp~R~~~v~~~-~~~~~~ 298 (319)
...+++.......+.+++|||++|+.+++.+ .+.+.|
T Consensus 336 ~~~~~kv~e~~~~g~qVlvFvhsR~~Ti~tA~~l~~~a 373 (1230)
T KOG0952|consen 336 EVCYDKVVEFLQEGHQVLVFVHSRNETIRTAKKLRERA 373 (1230)
T ss_pred HHHHHHHHHHHHcCCeEEEEEecChHHHHHHHHHHHHH
Confidence 2223332222234899999999999998873 344444
No 35
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=99.92 E-value=1.2e-24 Score=217.91 Aligned_cols=221 Identities=19% Similarity=0.151 Sum_probs=142.9
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
++|+|.++||.++.| ++++++||||||||++|.+|+++.+...... ..+|+++|||+||.|+++.+..
T Consensus 29 ptpiQ~~ai~~ll~g----------~dvl~~ApTGsGKT~af~lpll~~l~~~~~~--~~~LIL~PTreLa~Qv~~~l~~ 96 (629)
T PRK11634 29 PSPIQAECIPHLLNG----------RDVLGMAQTGSGKTAAFSLPLLHNLDPELKA--PQILVLAPTRELAVQVAEAMTD 96 (629)
T ss_pred CCHHHHHHHHHHHcC----------CCEEEEcCCCCcHHHHHHHHHHHHhhhccCC--CeEEEEeCcHHHHHHHHHHHHH
Confidence 668999999998764 4578888899999999999999988654333 4667777999999999998877
Q ss_pred HhccccCCCCceEEEEEeccc-----ccCCCCceEEEECchHHHHHHhcCC-CCCCccEEEEecccccccchhHHHHHHH
Q psy496 125 ERDEQCGRPGSSVGYQIRLEK-----ELPRKRGSILYCTAGILPEVMQSDP-ILSGVSHIVMDEIHERSMISDFLLAILK 198 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~-----~~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vViDEah~~~~~~~~~~~~l~ 198 (319)
+.+... +..+.......+ ......++|+|+|||++++++.... .++++++|||||||++ +.+.+...+..
T Consensus 97 ~~~~~~---~i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~m-l~~gf~~di~~ 172 (629)
T PRK11634 97 FSKHMR---GVNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEM-LRMGFIEDVET 172 (629)
T ss_pred HHhhcC---CceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHH-hhcccHHHHHH
Confidence 654332 333321111111 1112357899999999999996544 5999999999999973 44445555555
Q ss_pred hhhccccCceEEEecccc--ChhhHhh-hhCCCCEEEeCCccc---cceeeeehhhhhhhhhhHHHHHHHHhhhhhhhcc
Q psy496 199 DVTDKRKDLKLILMSATL--NAEKFSQ-FFGGAPILHIPGFTY---PVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQ 272 (319)
Q Consensus 199 ~~~~~~~~~qiv~lSAT~--~~~~l~~-~l~~~~~i~~~~r~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (319)
.+...+...|+++||||+ ....+.+ |+.+...+.+..... .+...|.... .......+.. .+. .
T Consensus 173 Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~~~~~~~~~i~q~~~~v~----~~~k~~~L~~-~L~-----~ 242 (629)
T PRK11634 173 IMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVW----GMRKNEALVR-FLE-----A 242 (629)
T ss_pred HHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEccCccccCCceEEEEEEec----hhhHHHHHHH-HHH-----h
Confidence 555667788999999999 3344544 555544455443321 2223332211 1111111111 111 1
Q ss_pred ccCCCcEEEeCCccccccc
Q psy496 273 FFGGAPILHIPGFTYPVQE 291 (319)
Q Consensus 273 ~~~g~~LVFlp~R~~~v~~ 291 (319)
.....+||||+++..+.++
T Consensus 243 ~~~~~~IVF~~tk~~a~~l 261 (629)
T PRK11634 243 EDFDAAIIFVRTKNATLEV 261 (629)
T ss_pred cCCCCEEEEeccHHHHHHH
Confidence 1256899999998776543
No 36
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.92 E-value=6.9e-25 Score=222.19 Aligned_cols=208 Identities=18% Similarity=0.199 Sum_probs=142.3
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccc-
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKE- 146 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~- 146 (319)
.++|++||+|||||||..+.+.+++.+...+ .+++|++|+|+||.+.++++.++- .. |..|+.....-+.
T Consensus 46 ~~~N~li~aPTgsGKTlIA~lai~~~l~~~~----~k~vYivPlkALa~Ek~~~~~~~~--~~---GirV~~~TgD~~~~ 116 (766)
T COG1204 46 SDENVLISAPTGSGKTLIALLAILSTLLEGG----GKVVYIVPLKALAEEKYEEFSRLE--EL---GIRVGISTGDYDLD 116 (766)
T ss_pred CCCcEEEEcCCCCchHHHHHHHHHHHHHhcC----CcEEEEeChHHHHHHHHHHhhhHH--hc---CCEEEEecCCcccc
Confidence 3789999999999999999999999887652 389999999999999999998221 11 6666633331111
Q ss_pred -cCCCCceEEEECchHHHHHHhcCCC-CCCccEEEEecccc-----cccchhHHHHHHHhhhccccCceEEEecccc-Ch
Q psy496 147 -LPRKRGSILYCTAGILPEVMQSDPI-LSGVSHIVMDEIHE-----RSMISDFLLAILKDVTDKRKDLKLILMSATL-NA 218 (319)
Q Consensus 147 -~~~~~~~Iiv~Tpg~ll~~l~~~~~-l~~v~~vViDEah~-----~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~-~~ 218 (319)
..-.+++|+|+||+.+...+++.+. +.++++|||||+|. ||...+.....++.. .+..|++++|||+ |.
T Consensus 117 ~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~---~~~~rivgLSATlpN~ 193 (766)
T COG1204 117 DERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMRRL---NELIRIVGLSATLPNA 193 (766)
T ss_pred hhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHHhh---CcceEEEEEeeecCCH
Confidence 1124788999999999998877665 78999999999996 565555555555544 3458999999999 99
Q ss_pred hhHhhhhCCCCEEEeCCccccce------eeeehhhhhhh--hhhHHHHHHHHhhhhhhhccccCCCcEEEeCCcccccc
Q psy496 219 EKFSQFFGGAPILHIPGFTYPVQ------EYYLEDVLNMT--RKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQ 290 (319)
Q Consensus 219 ~~l~~~l~~~~~i~~~~r~~~v~------~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~v~ 290 (319)
.++++|++.... ....++.|.. ..+....-... .......+....+.. . ..+|++|||||+|..+..
T Consensus 194 ~evA~wL~a~~~-~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~--~--~~~~qvLvFv~sR~~a~~ 268 (766)
T COG1204 194 EEVADWLNAKLV-ESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLES--L--AEGGQVLVFVHSRKEAEK 268 (766)
T ss_pred HHHHHHhCCccc-ccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHH--H--hcCCeEEEEEecCchHHH
Confidence 999999986554 3344443321 11111110000 001112222223322 2 238999999999999877
Q ss_pred cc
Q psy496 291 EY 292 (319)
Q Consensus 291 ~~ 292 (319)
++
T Consensus 269 ~A 270 (766)
T COG1204 269 TA 270 (766)
T ss_pred HH
Confidence 63
No 37
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.92 E-value=1.5e-24 Score=215.66 Aligned_cols=220 Identities=16% Similarity=0.151 Sum_probs=135.2
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhC-----CCCccEEEEecccHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARN-----RGSECCIMVTQPRRISAIAIA 119 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~-----~~~~~~vl~~~Ptr~la~q~~ 119 (319)
++++|.++||.++.|+ +++++||||||||++|++|+++.+.... .....++|+++|||+||.|++
T Consensus 32 ptpiQ~~~ip~~l~G~----------Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~ 101 (572)
T PRK04537 32 CTPIQALTLPVALPGG----------DVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIH 101 (572)
T ss_pred CCHHHHHHHHHHhCCC----------CEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHH
Confidence 5789999999987644 5777788999999999999999886421 112357888889999999999
Q ss_pred HHHHHHhccccCCCCceEEEEEecc-----cccCCCCceEEEECchHHHHHHhcC--CCCCCccEEEEecccccccchhH
Q psy496 120 ERVAQERDEQCGRPGSSVGYQIRLE-----KELPRKRGSILYCTAGILPEVMQSD--PILSGVSHIVMDEIHERSMISDF 192 (319)
Q Consensus 120 ~~~~~~~~~~~~~~g~~vg~~~~~~-----~~~~~~~~~Iiv~Tpg~ll~~l~~~--~~l~~v~~vViDEah~~~~~~~~ 192 (319)
+.+.++.... +..++...... ........+|+|+||++|++++... ..++++++|||||||.. +..++
T Consensus 102 ~~~~~l~~~~----~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~l-ld~gf 176 (572)
T PRK04537 102 KDAVKFGADL----GLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRM-FDLGF 176 (572)
T ss_pred HHHHHHhccC----CceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHH-hhcch
Confidence 9877664322 33333222111 1112235689999999999998553 34889999999999973 23333
Q ss_pred HHHHHHhhhcccc--CceEEEeccccC--hhhHh-hhhCCCCEEEeCCccc---cceeeeehhhhhhhhhhHHHHHHHHh
Q psy496 193 LLAILKDVTDKRK--DLKLILMSATLN--AEKFS-QFFGGAPILHIPGFTY---PVQEYYLEDVLNMTRKDLKLILMSAT 264 (319)
Q Consensus 193 ~~~~l~~~~~~~~--~~qiv~lSAT~~--~~~l~-~~l~~~~~i~~~~r~~---~v~~~~~~~~~~~~~~~~~~~~~~~~ 264 (319)
...+...+...+. +.|+++||||++ ...+. .++.+...+.+..... .+...+.... .......+..
T Consensus 177 ~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~l~~p~~i~v~~~~~~~~~i~q~~~~~~----~~~k~~~L~~-- 250 (572)
T PRK04537 177 IKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEHMNEPEKLVVETETITAARVRQRIYFPA----DEEKQTLLLG-- 250 (572)
T ss_pred HHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHHhcCCcEEEeccccccccceeEEEEecC----HHHHHHHHHH--
Confidence 3333333333332 579999999993 33333 4554443444333221 1222222111 1111111111
Q ss_pred hhhhhhccccCCCcEEEeCCccccc
Q psy496 265 LNAEKFSQFFGGAPILHIPGFTYPV 289 (319)
Q Consensus 265 ~~~~~~~~~~~g~~LVFlp~R~~~v 289 (319)
. +....++++||||+++..+-
T Consensus 251 --l--l~~~~~~k~LVF~nt~~~ae 271 (572)
T PRK04537 251 --L--LSRSEGARTMVFVNTKAFVE 271 (572)
T ss_pred --H--HhcccCCcEEEEeCCHHHHH
Confidence 1 12223678999999987653
No 38
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=99.91 E-value=2.5e-24 Score=208.35 Aligned_cols=171 Identities=18% Similarity=0.187 Sum_probs=119.6
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHh--CCCCccEEEEecccHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIAR--NRGSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~--~~~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
++++|.++||++.+| ++++++||||||||++|.+|+++.+... ......+++++.||++||.|+++.+
T Consensus 24 p~~iQ~~ai~~~~~g----------~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~ 93 (434)
T PRK11192 24 PTAIQAEAIPPALDG----------RDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQA 93 (434)
T ss_pred CCHHHHHHHHHHhCC----------CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHH
Confidence 568899999998754 4588888899999999999999987542 1223458899999999999999888
Q ss_pred HHHhccccCCCCceEEEEEecc-----cccCCCCceEEEECchHHHHHHhcCC-CCCCccEEEEecccccccchhHHHHH
Q psy496 123 AQERDEQCGRPGSSVGYQIRLE-----KELPRKRGSILYCTAGILPEVMQSDP-ILSGVSHIVMDEIHERSMISDFLLAI 196 (319)
Q Consensus 123 ~~~~~~~~~~~g~~vg~~~~~~-----~~~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vViDEah~~~~~~~~~~~~ 196 (319)
..+.... +..++...... ......+.+|+|+|||+|++++.... .+.++++||+||||.. +..++...+
T Consensus 94 ~~l~~~~----~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~-l~~~~~~~~ 168 (434)
T PRK11192 94 RELAKHT----HLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRM-LDMGFAQDI 168 (434)
T ss_pred HHHHccC----CcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHH-hCCCcHHHH
Confidence 7764432 33333221110 11112456899999999999996554 4899999999999963 333333333
Q ss_pred HHhhhccccCceEEEeccccC---hhhHhhhhCCCCE
Q psy496 197 LKDVTDKRKDLKLILMSATLN---AEKFSQFFGGAPI 230 (319)
Q Consensus 197 l~~~~~~~~~~qiv~lSAT~~---~~~l~~~l~~~~~ 230 (319)
.......+...|+++||||++ ...+.+++...+.
T Consensus 169 ~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~ 205 (434)
T PRK11192 169 ETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPV 205 (434)
T ss_pred HHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCE
Confidence 333334455679999999993 4566666655443
No 39
>PRK00254 ski2-like helicase; Provisional
Probab=99.91 E-value=6e-24 Score=217.27 Aligned_cols=221 Identities=14% Similarity=0.100 Sum_probs=142.0
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
.+|+|.++++... ..++|++++||||||||.++.+|+++.+...+ .+++++.|+++||.|.++.+..
T Consensus 24 l~~~Q~~ai~~~~---------~~g~nvlv~apTGsGKT~~~~l~il~~l~~~~----~~~l~l~P~~aLa~q~~~~~~~ 90 (720)
T PRK00254 24 LYPPQAEALKSGV---------LEGKNLVLAIPTASGKTLVAEIVMVNKLLREG----GKAVYLVPLKALAEEKYREFKD 90 (720)
T ss_pred CCHHHHHHHHHHH---------hCCCcEEEECCCCcHHHHHHHHHHHHHHHhcC----CeEEEEeChHHHHHHHHHHHHH
Confidence 5688999997521 24577999999999999999999998876432 3788888999999999998876
Q ss_pred HhccccCCCCceEEEEEeccc--ccCCCCceEEEECchHHHHHHhcC-CCCCCccEEEEeccccccc--chhHHHHHHHh
Q psy496 125 ERDEQCGRPGSSVGYQIRLEK--ELPRKRGSILYCTAGILPEVMQSD-PILSGVSHIVMDEIHERSM--ISDFLLAILKD 199 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~--~~~~~~~~Iiv~Tpg~ll~~l~~~-~~l~~v~~vViDEah~~~~--~~~~~~~~l~~ 199 (319)
+ .. . |..++......+ .....+++|+|+||+++..++... ..++++++||+||+|..+. ....+...+..
T Consensus 91 ~-~~-~---g~~v~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~rg~~le~il~~ 165 (720)
T PRK00254 91 W-EK-L---GLRVAMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDRGATLEMILTH 165 (720)
T ss_pred H-hh-c---CCEEEEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccchHHHHHHHHh
Confidence 3 21 1 444442221111 111135689999999998887544 4589999999999997321 11122222222
Q ss_pred hhccccCceEEEecccc-ChhhHhhhhCCCCEEEeCCccccceee--eehhhhhhhh--hhHHHHHHHHhhhhhhhcccc
Q psy496 200 VTDKRKDLKLILMSATL-NAEKFSQFFGGAPILHIPGFTYPVQEY--YLEDVLNMTR--KDLKLILMSATLNAEKFSQFF 274 (319)
Q Consensus 200 ~~~~~~~~qiv~lSAT~-~~~~l~~~l~~~~~i~~~~r~~~v~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 274 (319)
...+.|+|++|||+ |++++++|++.. .+....|+.|+... +......... ......+.....+. .. .
T Consensus 166 ---l~~~~qiI~lSATl~n~~~la~wl~~~-~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--i~--~ 237 (720)
T PRK00254 166 ---MLGRAQILGLSATVGNAEELAEWLNAE-LVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDA--VK--K 237 (720)
T ss_pred ---cCcCCcEEEEEccCCCHHHHHHHhCCc-cccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHH--HH--h
Confidence 33567999999999 999999999753 44455666665322 1111101000 00111122222232 12 2
Q ss_pred CCCcEEEeCCccccccc
Q psy496 275 GGAPILHIPGFTYPVQE 291 (319)
Q Consensus 275 ~g~~LVFlp~R~~~v~~ 291 (319)
++++|||+++|..+..+
T Consensus 238 ~~~vLVF~~sr~~~~~~ 254 (720)
T PRK00254 238 GKGALVFVNTRRSAEKE 254 (720)
T ss_pred CCCEEEEEcChHHHHHH
Confidence 78999999999987554
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=99.91 E-value=5e-24 Score=221.05 Aligned_cols=182 Identities=23% Similarity=0.277 Sum_probs=124.5
Q ss_pred cchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCC----CCccEEE
Q psy496 31 LDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNR----GSECCIM 106 (319)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~----~~~~~vl 106 (319)
..+|+...++. ++|+|.++||.+.+ +++++|+||||||||++|.+|+++.+..... ....+++
T Consensus 22 v~~~~~~~~~~---~tpiQ~~Ai~~il~----------g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~L 88 (876)
T PRK13767 22 VREWFKEKFGT---FTPPQRYAIPLIHE----------GKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCL 88 (876)
T ss_pred HHHHHHHccCC---CCHHHHHHHHHHHc----------CCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEE
Confidence 34566665433 67899999999864 4568999999999999999999998865321 2346788
Q ss_pred EecccHHHHHHHHHHHHHHhcc---ccCCCCc---eEEEEEecccccC-------CCCceEEEECchHHHHHHhcCC---
Q psy496 107 VTQPRRISAIAIAERVAQERDE---QCGRPGS---SVGYQIRLEKELP-------RKRGSILYCTAGILPEVMQSDP--- 170 (319)
Q Consensus 107 ~~~Ptr~la~q~~~~~~~~~~~---~~~~~g~---~vg~~~~~~~~~~-------~~~~~Iiv~Tpg~ll~~l~~~~--- 170 (319)
++.|+|+||.|+++++...+.. .....|. .+...+..++... ...++|+|+||++|..++....
T Consensus 89 yIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~ 168 (876)
T PRK13767 89 YVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFRE 168 (876)
T ss_pred EEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHH
Confidence 9999999999998866543211 0000011 1222233333211 1346899999999987774332
Q ss_pred CCCCccEEEEecccc-----cccchhHHHHHHHhhhccccCceEEEecccc-ChhhHhhhhCC
Q psy496 171 ILSGVSHIVMDEIHE-----RSMISDFLLAILKDVTDKRKDLKLILMSATL-NAEKFSQFFGG 227 (319)
Q Consensus 171 ~l~~v~~vViDEah~-----~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~-~~~~l~~~l~~ 227 (319)
.++++++||+||+|. ||......+..+..+. .++.|++++|||+ |.+.+++|+..
T Consensus 169 ~l~~l~~VVIDE~H~l~~~~RG~~l~~~L~rL~~l~--~~~~q~IglSATl~~~~~va~~L~~ 229 (876)
T PRK13767 169 KLRTVKWVIVDEIHSLAENKRGVHLSLSLERLEELA--GGEFVRIGLSATIEPLEEVAKFLVG 229 (876)
T ss_pred HHhcCCEEEEechhhhccCccHHHHHHHHHHHHHhc--CCCCeEEEEecccCCHHHHHHHhcC
Confidence 378999999999997 2333344444554443 2467999999999 88999999864
No 41
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=99.90 E-value=2.3e-23 Score=203.70 Aligned_cols=175 Identities=21% Similarity=0.208 Sum_probs=116.9
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCC-----CccEEEEecccHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRG-----SECCIMVTQPRRISAIAIA 119 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~-----~~~~vl~~~Ptr~la~q~~ 119 (319)
.+++|.++||.+.+|+ +++++||||||||++|.+|+++.+...... ...+++++.|||+||.|+.
T Consensus 110 ~~~iQ~~ai~~~~~G~----------dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~ 179 (475)
T PRK01297 110 CTPIQAQVLGYTLAGH----------DAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIA 179 (475)
T ss_pred CCHHHHHHHHHHhCCC----------CEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHH
Confidence 5689999999987654 477788899999999999999988654311 1357777889999999999
Q ss_pred HHHHHHhccccCCCCceEEEEEecc------cccCCCCceEEEECchHHHHHHhc-CCCCCCccEEEEecccccccchhH
Q psy496 120 ERVAQERDEQCGRPGSSVGYQIRLE------KELPRKRGSILYCTAGILPEVMQS-DPILSGVSHIVMDEIHERSMISDF 192 (319)
Q Consensus 120 ~~~~~~~~~~~~~~g~~vg~~~~~~------~~~~~~~~~Iiv~Tpg~ll~~l~~-~~~l~~v~~vViDEah~~~~~~~~ 192 (319)
+.+..+.... +..+....... .......++|+|+||++|+++... ...++++++|||||+|.. ...++
T Consensus 180 ~~~~~l~~~~----~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l-~~~~~ 254 (475)
T PRK01297 180 KDAAALTKYT----GLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRM-LDMGF 254 (475)
T ss_pred HHHHHhhccC----CCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHH-Hhccc
Confidence 9887764322 33332111111 111123568999999999998844 445899999999999973 22223
Q ss_pred HHHHHHhhhcc--ccCceEEEecccc--ChhhHhhh-hCCCCEEEeC
Q psy496 193 LLAILKDVTDK--RKDLKLILMSATL--NAEKFSQF-FGGAPILHIP 234 (319)
Q Consensus 193 ~~~~l~~~~~~--~~~~qiv~lSAT~--~~~~l~~~-l~~~~~i~~~ 234 (319)
...+.+.+... ..+.|++++|||+ +...+.+. +.+...+.+.
T Consensus 255 ~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~~~~~~~v~~~ 301 (475)
T PRK01297 255 IPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQWTTDPAIVEIE 301 (475)
T ss_pred HHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHhccCCEEEEec
Confidence 22222222222 2356999999998 55556554 4444344443
No 42
>PTZ00424 helicase 45; Provisional
Probab=99.89 E-value=3.5e-23 Score=198.10 Aligned_cols=175 Identities=19% Similarity=0.136 Sum_probs=114.9
Q ss_pred ccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEE
Q psy496 26 VPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCI 105 (319)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~v 105 (319)
+++.+.+.+....+. .++++|.++||.+..|+ +++++||||||||++|.+|+++.+.... ...++
T Consensus 35 l~~~~~~~l~~~~~~---~~~~~Q~~ai~~i~~~~----------d~ii~apTGsGKT~~~~l~~l~~~~~~~--~~~~~ 99 (401)
T PTZ00424 35 LNEDLLRGIYSYGFE---KPSAIQQRGIKPILDGY----------DTIGQAQSGTGKTATFVIAALQLIDYDL--NACQA 99 (401)
T ss_pred CCHHHHHHHHHcCCC---CCCHHHHHHHHHHhCCC----------CEEEECCCCChHHHHHHHHHHHHhcCCC--CCceE
Confidence 444444444443332 36789999999987654 4778888999999999999998764322 23478
Q ss_pred EEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc-ccCCCCceEEEECchHHHHHHhcCC-CCCCccEEEEecc
Q psy496 106 MVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK-ELPRKRGSILYCTAGILPEVMQSDP-ILSGVSHIVMDEI 183 (319)
Q Consensus 106 l~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~-~~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vViDEa 183 (319)
+++.|+++||.|+.+.+...........+..+|.....++ .......+|+|+||+++.+.+..+. .++++++||+||+
T Consensus 100 lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEa 179 (401)
T PTZ00424 100 LILAPTRELAQQIQKVVLALGDYLKVRCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEA 179 (401)
T ss_pred EEECCCHHHHHHHHHHHHHHhhhcCceEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecH
Confidence 8888999999999887766543211000111111110000 1112346899999999999985544 4899999999999
Q ss_pred cccccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 184 HERSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 184 h~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
|.. ...++.....+.+...+++.|++++|||+
T Consensus 180 h~~-~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 211 (401)
T PTZ00424 180 DEM-LSRGFKGQIYDVFKKLPPDVQVALFSATM 211 (401)
T ss_pred HHH-HhcchHHHHHHHHhhCCCCcEEEEEEecC
Confidence 972 12222223333444556788999999999
No 43
>KOG0328|consensus
Probab=99.89 E-value=1e-23 Score=184.75 Aligned_cols=232 Identities=17% Similarity=0.218 Sum_probs=155.3
Q ss_pred ccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEE
Q psy496 26 VPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCI 105 (319)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~v 105 (319)
+.+-++...++..++. +..||++|||.++.|+|++++++ .|+|||.+|.+.+++.+....+.. .+
T Consensus 34 l~edlLrgiY~yGfek---PS~IQqrAi~~IlkGrdViaQaq----------SGTGKTa~~si~vlq~~d~~~r~t--Q~ 98 (400)
T KOG0328|consen 34 LKEDLLRGIYAYGFEK---PSAIQQRAIPQILKGRDVIAQAQ----------SGTGKTATFSISVLQSLDISVRET--QA 98 (400)
T ss_pred chHHHHHHHHHhccCC---chHHHhhhhhhhhcccceEEEec----------CCCCceEEEEeeeeeeccccccee--eE
Confidence 3444555556666654 45679999999999999888888 999999999999988876655433 56
Q ss_pred EEecccHHHHHHHHHHHHHHhc---ccc--CCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCC-CCCccEEE
Q psy496 106 MVTQPRRISAIAIAERVAQERD---EQC--GRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPI-LSGVSHIV 179 (319)
Q Consensus 106 l~~~Ptr~la~q~~~~~~~~~~---~~~--~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~-l~~v~~vV 179 (319)
++++||||||.|+.+.+..+-+ ..+ ..+|..+|..++ ......+++.+|||+++++++.... -..++++|
T Consensus 99 lilsPTRELa~Qi~~vi~alg~~mnvq~hacigg~n~gedik----kld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlV 174 (400)
T KOG0328|consen 99 LILSPTRELAVQIQKVILALGDYMNVQCHACIGGKNLGEDIK----KLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLV 174 (400)
T ss_pred EEecChHHHHHHHHHHHHHhcccccceEEEEecCCccchhhh----hhcccceEeeCCCchHHHHHHhccccccceeEEE
Confidence 6666999999999987766532 221 122333332222 1123578999999999999955544 78999999
Q ss_pred EecccccccchhHHHHHHHhhhccccCceEEEecccc--ChhhHhhhhCCCCE-EEeCCcccc---ceeeeehhhhhhhh
Q psy496 180 MDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL--NAEKFSQFFGGAPI-LHIPGFTYP---VQEYYLEDVLNMTR 253 (319)
Q Consensus 180 iDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~l~~~~~-i~~~~r~~~---v~~~~~~~~~~~~~ 253 (319)
+||+|+. +..++-....+....++|+.|++++|||+ +.....++|...|+ +.+.-...+ ++.+|.... .
T Consensus 175 LDEaDem-L~kgfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilvkrdeltlEgIKqf~v~ve----~ 249 (400)
T KOG0328|consen 175 LDEADEM-LNKGFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILVKRDELTLEGIKQFFVAVE----K 249 (400)
T ss_pred eccHHHH-HHhhHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEEecCCCchhhhhhheeeec----h
Confidence 9999983 45566677777777788999999999999 44455566665554 333221122 445565432 2
Q ss_pred hhHHHHHHHHhhhhhhhccccCCCcEEEeCCcc
Q psy496 254 KDLKLILMSATLNAEKFSQFFGGAPILHIPGFT 286 (319)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~ 286 (319)
.+.+.-.....++- +. --+++|||+|++
T Consensus 250 EewKfdtLcdLYd~--Lt---ItQavIFcnTk~ 277 (400)
T KOG0328|consen 250 EEWKFDTLCDLYDT--LT---ITQAVIFCNTKR 277 (400)
T ss_pred hhhhHhHHHHHhhh--he---hheEEEEecccc
Confidence 23222222334443 11 347899999985
No 44
>KOG0339|consensus
Probab=99.89 E-value=4e-23 Score=193.17 Aligned_cols=172 Identities=21% Similarity=0.178 Sum_probs=129.0
Q ss_pred ccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHh-----CCCCccEEEEecccHHHHH
Q psy496 42 ECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIAR-----NRGSECCIMVTQPRRISAI 116 (319)
Q Consensus 42 ~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~-----~~~~~~~vl~~~Ptr~la~ 116 (319)
-++++|||-+++|..++|++++..+. ||||||.+|..|++.++... +.++.+.|++ |||+||.
T Consensus 243 y~kptpiq~qalptalsgrdvigIAk----------tgSgktaAfi~pm~~himdq~eL~~g~gPi~vilv--PTrela~ 310 (731)
T KOG0339|consen 243 YEKPTPIQCQALPTALSGRDVIGIAK----------TGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILV--PTRELAS 310 (731)
T ss_pred cccCCcccccccccccccccchheee----------ccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEe--ccHHHHH
Confidence 35578999999999999999999999 99999999999999887432 3344444555 9999999
Q ss_pred HHHHHHHHHhccccCCCCceEE-----EEEecccccCCCCceEEEECchHHHHHHhcC-CCCCCccEEEEecccccccch
Q psy496 117 AIAERVAQERDEQCGRPGSSVG-----YQIRLEKELPRKRGSILYCTAGILPEVMQSD-PILSGVSHIVMDEIHERSMIS 190 (319)
Q Consensus 117 q~~~~~~~~~~~~~~~~g~~vg-----~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~-~~l~~v~~vViDEah~~~~~~ 190 (319)
|++....++-... |..+. ...+.........+.|+|||||||+++++.+ ..+.+++++|+||+|+ ...+
T Consensus 311 Qi~~eaKkf~K~y----gl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadr-mfdm 385 (731)
T KOG0339|consen 311 QIFSEAKKFGKAY----GLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADR-MFDM 385 (731)
T ss_pred HHHHHHHHhhhhc----cceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhh-hhcc
Confidence 9988666552221 22221 1122222333357889999999999999554 4599999999999996 3667
Q ss_pred hHHHHHHHhhhccccCceEEEecccc--ChhhHhhhhCCCCE
Q psy496 191 DFLLAILKDVTDKRKDLKLILMSATL--NAEKFSQFFGGAPI 230 (319)
Q Consensus 191 ~~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~l~~~~~ 230 (319)
++...+..+....+|+.|.++||||+ ..+.+++-+-..|+
T Consensus 386 Gfe~qVrSI~~hirpdrQtllFsaTf~~kIe~lard~L~dpV 427 (731)
T KOG0339|consen 386 GFEPQVRSIKQHIRPDRQTLLFSATFKKKIEKLARDILSDPV 427 (731)
T ss_pred ccHHHHHHHHhhcCCcceEEEeeccchHHHHHHHHHHhcCCe
Confidence 77777777777789999999999999 67777764434444
No 45
>KOG0336|consensus
Probab=99.89 E-value=1.4e-23 Score=191.84 Aligned_cols=222 Identities=18% Similarity=0.147 Sum_probs=149.8
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHh----CCCCccEEEEecccHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIAR----NRGSECCIMVTQPRRISAIAIA 119 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~----~~~~~~~vl~~~Ptr~la~q~~ 119 (319)
+++|||.+|||++++|.|+++.++ ||+|||++|++|-+.++... +..+...++++.|||+||.|+.
T Consensus 242 KPtPIqSQaWPI~LQG~DliGVAQ----------TgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie 311 (629)
T KOG0336|consen 242 KPTPIQSQAWPILLQGIDLIGVAQ----------TGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIE 311 (629)
T ss_pred CCCcchhcccceeecCcceEEEEe----------cCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHH
Confidence 367999999999999999988888 99999999999976555332 2334567888889999999998
Q ss_pred HHHHHHhccccCCCCceE-EEEEecccc-cCCCCceEEEECchHHHHHHhcC-CCCCCccEEEEecccccccchhHHHHH
Q psy496 120 ERVAQERDEQCGRPGSSV-GYQIRLEKE-LPRKRGSILYCTAGILPEVMQSD-PILSGVSHIVMDEIHERSMISDFLLAI 196 (319)
Q Consensus 120 ~~~~~~~~~~~~~~g~~v-g~~~~~~~~-~~~~~~~Iiv~Tpg~ll~~l~~~-~~l~~v~~vViDEah~~~~~~~~~~~~ 196 (319)
-...++.-.... ...+ |..-+.+.- ....+..|+++|||+|.++...+ ..|.++.++|+||||+ .++++|-..+
T Consensus 312 ~e~~kysyng~k--svc~ygggnR~eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADr-MLDMgFEpqI 388 (629)
T KOG0336|consen 312 GEVKKYSYNGLK--SVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADR-MLDMGFEPQI 388 (629)
T ss_pred hHHhHhhhcCcc--eEEEecCCCchhHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhh-hhcccccHHH
Confidence 777665322110 0011 111221111 11235679999999999998444 4599999999999995 5888999999
Q ss_pred HHhhhccccCceEEEecccc--ChhhHhh-hhCCCCEEEeCCcc-----ccceeeeehhhhhhhhhhHHHHHHHHhhhhh
Q psy496 197 LKDVTDKRKDLKLILMSATL--NAEKFSQ-FFGGAPILHIPGFT-----YPVQEYYLEDVLNMTRKDLKLILMSATLNAE 268 (319)
Q Consensus 197 l~~~~~~~~~~qiv~lSAT~--~~~~l~~-~l~~~~~i~~~~r~-----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (319)
.+.+...+|++|+++.|||. .+..++. |+ ..|++...|.. ..|+..++-. .+......+...+
T Consensus 389 rkilldiRPDRqtvmTSATWP~~VrrLa~sY~-Kep~~v~vGsLdL~a~~sVkQ~i~v~----~d~~k~~~~~~f~---- 459 (629)
T KOG0336|consen 389 RKILLDIRPDRQTVMTSATWPEGVRRLAQSYL-KEPMIVYVGSLDLVAVKSVKQNIIVT----TDSEKLEIVQFFV---- 459 (629)
T ss_pred HHHhhhcCCcceeeeecccCchHHHHHHHHhh-hCceEEEecccceeeeeeeeeeEEec----ccHHHHHHHHHHH----
Confidence 99999999999999999999 5666765 55 44554443332 3343333211 1222222221111
Q ss_pred hhccccCCCcEEEeCCcccc
Q psy496 269 KFSQFFGGAPILHIPGFTYP 288 (319)
Q Consensus 269 ~~~~~~~g~~LVFlp~R~~~ 288 (319)
-+.+....+||||.....+
T Consensus 460 -~~ms~ndKvIiFv~~K~~A 478 (629)
T KOG0336|consen 460 -ANMSSNDKVIIFVSRKVMA 478 (629)
T ss_pred -HhcCCCceEEEEEechhhh
Confidence 1223478899999876554
No 46
>KOG0337|consensus
Probab=99.88 E-value=3.4e-23 Score=189.96 Aligned_cols=223 Identities=16% Similarity=0.111 Sum_probs=146.5
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
++|||+++||.++++++++..+. ||||||.+|.+|+++++.... ....+.+++.|||+||.|..+.+++
T Consensus 44 ptpiqRKTipliLe~~dvv~mar----------tgsgktaaf~ipm~e~Lk~~s-~~g~RalilsptreLa~qtlkvvkd 112 (529)
T KOG0337|consen 44 PTPIQRKTIPLILEGRDVVGMAR----------TGSGKTAAFLIPMIEKLKSHS-QTGLRALILSPTRELALQTLKVVKD 112 (529)
T ss_pred CCchhcccccceeeccccceeee----------cCCcchhhHHHHHHHHHhhcc-ccccceeeccCcHHHHHHHHHHHHH
Confidence 77999999999999999999998 999999999999999987765 4456777777999999999987776
Q ss_pred HhccccCCCCceEEEEEe-cccccCCCCceEEEECchHHHHHH-hcCCCCCCccEEEEecccccccchhHHHHHHHhhhc
Q psy496 125 ERDEQCGRPGSSVGYQIR-LEKELPRKRGSILYCTAGILPEVM-QSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTD 202 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~-~~~~~~~~~~~Iiv~Tpg~ll~~l-~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~ 202 (319)
.-...-......+|+... ..-....++.+|+++|||+++... ..+..|+.+.+||+||+|. -..+++....-+.+..
T Consensus 113 lgrgt~lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadr-lfemgfqeql~e~l~r 191 (529)
T KOG0337|consen 113 LGRGTKLRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADR-LFEMGFQEQLHEILSR 191 (529)
T ss_pred hccccchhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhH-HHhhhhHHHHHHHHHh
Confidence 632110000112222111 111223357889999999998877 5555699999999999996 3455566666667777
Q ss_pred cccCceEEEeccccC--hhhHhhh-hCCCCEEEeC--Ccccc-ceeeeehhhhhhhhhhHHHHHHHHhhhhhhhccccCC
Q psy496 203 KRKDLKLILMSATLN--AEKFSQF-FGGAPILHIP--GFTYP-VQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGG 276 (319)
Q Consensus 203 ~~~~~qiv~lSAT~~--~~~l~~~-l~~~~~i~~~--~r~~~-v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (319)
.+.+.|.++||||++ .-++++- +.++..+..+ .+..+ ++..+.... ..+....+....-+.. ..+
T Consensus 192 l~~~~QTllfSatlp~~lv~fakaGl~~p~lVRldvetkise~lk~~f~~~~----~a~K~aaLl~il~~~~-----~~~ 262 (529)
T KOG0337|consen 192 LPESRQTLLFSATLPRDLVDFAKAGLVPPVLVRLDVETKISELLKVRFFRVR----KAEKEAALLSILGGRI-----KDK 262 (529)
T ss_pred CCCcceEEEEeccCchhhHHHHHccCCCCceEEeehhhhcchhhhhheeeec----cHHHHHHHHHHHhccc-----ccc
Confidence 777889999999993 2344442 3333344433 22211 222222111 1222223333322221 145
Q ss_pred CcEEEeCCcccc
Q psy496 277 APILHIPGFTYP 288 (319)
Q Consensus 277 ~~LVFlp~R~~~ 288 (319)
+.+||++++.+.
T Consensus 263 ~t~vf~~tk~hv 274 (529)
T KOG0337|consen 263 QTIVFVATKHHV 274 (529)
T ss_pred ceeEEecccchH
Confidence 899999998764
No 47
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.88 E-value=3.5e-22 Score=212.07 Aligned_cols=151 Identities=24% Similarity=0.316 Sum_probs=108.7
Q ss_pred EecCCCCCccchhhHHHHHHHHHhC--------CCCccEEEEecccHHHHHHHHHHHHHHhccc------c--CCCCceE
Q psy496 74 IYTSTGCGKTTQVPQFILDDEIARN--------RGSECCIMVTQPRRISAIAIAERVAQERDEQ------C--GRPGSSV 137 (319)
Q Consensus 74 i~apTGSGKT~~~~l~il~~l~~~~--------~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~------~--~~~g~~v 137 (319)
|+||||||||++|++|+++.+.... .....++||++|+|+|+.|+.+.+...+... . ...+..+
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 5789999999999999999987542 1235789999999999999999886532210 0 0013344
Q ss_pred EEEEeccccc-------CCCCceEEEECchHHHHHHhcC--CCCCCccEEEEecccc-----cccchhHHHHHHHhhhcc
Q psy496 138 GYQIRLEKEL-------PRKRGSILYCTAGILPEVMQSD--PILSGVSHIVMDEIHE-----RSMISDFLLAILKDVTDK 203 (319)
Q Consensus 138 g~~~~~~~~~-------~~~~~~Iiv~Tpg~ll~~l~~~--~~l~~v~~vViDEah~-----~~~~~~~~~~~l~~~~~~ 203 (319)
+ .+.++.. ..+.++|+|+||++|..++.++ ..++++++|||||+|. ||.+....+.++..+.
T Consensus 81 ~--vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~l~-- 156 (1490)
T PRK09751 81 G--IRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDALL-- 156 (1490)
T ss_pred E--EEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHHhC--
Confidence 3 3332221 1235789999999998887433 3589999999999996 4444555666666553
Q ss_pred ccCceEEEecccc-ChhhHhhhhCCC
Q psy496 204 RKDLKLILMSATL-NAEKFSQFFGGA 228 (319)
Q Consensus 204 ~~~~qiv~lSAT~-~~~~l~~~l~~~ 228 (319)
+.+.|+|++|||+ |++++++|++..
T Consensus 157 ~~~~QrIgLSATI~n~eevA~~L~g~ 182 (1490)
T PRK09751 157 HTSAQRIGLSATVRSASDVAAFLGGD 182 (1490)
T ss_pred CCCCeEEEEEeeCCCHHHHHHHhcCC
Confidence 3467999999999 999999999753
No 48
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.87 E-value=1.1e-21 Score=186.00 Aligned_cols=228 Identities=17% Similarity=0.128 Sum_probs=160.0
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
..|+|.-++.+= .-+++|.++..+|+||||++..++=+..+...+ .+.+++.|..+||+|-++.+.+
T Consensus 217 LlPVQ~laVe~G---------LLeG~nllVVSaTasGKTLIgElAGi~~~l~~g----~KmlfLvPLVALANQKy~dF~~ 283 (830)
T COG1202 217 LLPVQVLAVEAG---------LLEGENLLVVSATASGKTLIGELAGIPRLLSGG----KKMLFLVPLVALANQKYEDFKE 283 (830)
T ss_pred ecchhhhhhhhc---------cccCCceEEEeccCCCcchHHHhhCcHHHHhCC----CeEEEEehhHHhhcchHHHHHH
Confidence 458887776552 235677888888999999999998887776644 2788888999999999999888
Q ss_pred HhccccCCCCceEEEE-Eeccc----ccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccc-----cccchhHHH
Q psy496 125 ERDEQCGRPGSSVGYQ-IRLEK----ELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHE-----RSMISDFLL 194 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~-~~~~~----~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~-----~~~~~~~~~ 194 (319)
.....-......||.. ++... ......++|+|+|.+-+-.+++....+.++..|||||+|. ||...|.+.
T Consensus 284 rYs~LglkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdiGtVVIDEiHtL~deERG~RLdGLI 363 (830)
T COG1202 284 RYSKLGLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDIGTVVIDEIHTLEDEERGPRLDGLI 363 (830)
T ss_pred HhhcccceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCcccccceEEeeeeeeccchhcccchhhHH
Confidence 7643311112333321 11111 1122357899999988777777778899999999999995 788888888
Q ss_pred HHHHhhhccccCceEEEecccc-ChhhHhhhhCCCCEEEeCCccccceeeeehhhhhhhhhhHHHHHHHHhhhhhhhccc
Q psy496 195 AILKDVTDKRKDLKLILMSATL-NAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQF 273 (319)
Q Consensus 195 ~~l~~~~~~~~~~qiv~lSAT~-~~~~l~~~l~~~~~i~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (319)
++++.+. |..|+|.+|||+ |++.+++.|+ ...+.-+.|+.|++-|..-.--....++.-.-+...-+..+... -
T Consensus 364 ~RLr~l~---~~AQ~i~LSATVgNp~elA~~l~-a~lV~y~~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~ssk-g 438 (830)
T COG1202 364 GRLRYLF---PGAQFIYLSATVGNPEELAKKLG-AKLVLYDERPVPLERHLVFARNESEKWDIIARLVKREFSTESSK-G 438 (830)
T ss_pred HHHHHhC---CCCeEEEEEeecCChHHHHHHhC-CeeEeecCCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhcc-C
Confidence 8877765 478999999999 9999999995 56677789999998776533211112222222333333332222 2
Q ss_pred cCCCcEEEeCCcccccc
Q psy496 274 FGGAPILHIPGFTYPVQ 290 (319)
Q Consensus 274 ~~g~~LVFlp~R~~~v~ 290 (319)
..|+.|||.++|+-|.+
T Consensus 439 ~rGQtIVFT~SRrr~h~ 455 (830)
T COG1202 439 YRGQTIVFTYSRRRCHE 455 (830)
T ss_pred cCCceEEEecchhhHHH
Confidence 48999999999987743
No 49
>KOG0333|consensus
Probab=99.87 E-value=4.7e-22 Score=186.76 Aligned_cols=218 Identities=18% Similarity=0.177 Sum_probs=137.6
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHh---------CCCCccEEEEecccHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIAR---------NRGSECCIMVTQPRRISA 115 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~---------~~~~~~~vl~~~Ptr~la 115 (319)
++|||+.+||..++.+| +|..|+||||||++|++|++..+..- -.++. .+++.|||+||
T Consensus 268 ptpIqR~aipl~lQ~rD----------~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpy--aiilaptReLa 335 (673)
T KOG0333|consen 268 PTPIQRQAIPLGLQNRD----------PIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPY--AIILAPTRELA 335 (673)
T ss_pred CchHHHhhccchhccCC----------eeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCce--eeeechHHHHH
Confidence 45999999998776555 55555599999999999998766332 22344 44445999999
Q ss_pred HHHHHHHHHHhccccCCCCceEEEEEecccc--cCCCCceEEEECchHHHHHHhcC-CCCCCccEEEEecccccccchhH
Q psy496 116 IAIAERVAQERDEQCGRPGSSVGYQIRLEKE--LPRKRGSILYCTAGILPEVMQSD-PILSGVSHIVMDEIHERSMISDF 192 (319)
Q Consensus 116 ~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~--~~~~~~~Iiv~Tpg~ll~~l~~~-~~l~~v~~vViDEah~~~~~~~~ 192 (319)
+|+...-.++........-..+|.. ..+.. ..+..|+|+++|||+|++.+.+. ..+++..+||+||||+ .+++++
T Consensus 336 qqIeeEt~kf~~~lg~r~vsvigg~-s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadr-miDmgf 413 (673)
T KOG0333|consen 336 QQIEEETNKFGKPLGIRTVSVIGGL-SFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADR-MIDMGF 413 (673)
T ss_pred HHHHHHHHHhcccccceEEEEeccc-chhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhh-hhcccc
Confidence 9998765544222110001222222 22222 22357899999999999999544 4489999999999996 366666
Q ss_pred HHHHHHhhhcccc-------------------------CceEEEecccc--ChhhHhh-hhCCCCEEEeC--Ccccc-ce
Q psy496 193 LLAILKDVTDKRK-------------------------DLKLILMSATL--NAEKFSQ-FFGGAPILHIP--GFTYP-VQ 241 (319)
Q Consensus 193 ~~~~l~~~~~~~~-------------------------~~qiv~lSAT~--~~~~l~~-~l~~~~~i~~~--~r~~~-v~ 241 (319)
-..+.+.+...+. -.|.++||||+ -++.+++ ||.++.++++. +++.| ++
T Consensus 414 E~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~gk~~~rve 493 (673)
T KOG0333|consen 414 EPDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSAGKPTPRVE 493 (673)
T ss_pred cHHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccCCCCccchh
Confidence 6666655543221 17899999999 4566665 78777666665 45544 22
Q ss_pred e--eeehhhhhhhhhhHHHHHHHHhhhhhhhccccCCCcEEEeCCcccc
Q psy496 242 E--YYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYP 288 (319)
Q Consensus 242 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~ 288 (319)
. ++... +...+. +... +.+....+++||+++...+
T Consensus 494 Q~v~m~~e-----d~k~kk-L~ei------l~~~~~ppiIIFvN~kk~~ 530 (673)
T KOG0333|consen 494 QKVEMVSE-----DEKRKK-LIEI------LESNFDPPIIIFVNTKKGA 530 (673)
T ss_pred eEEEEecc-----hHHHHH-HHHH------HHhCCCCCEEEEEechhhH
Confidence 2 22222 222222 2111 1122367899999998655
No 50
>KOG0350|consensus
Probab=99.86 E-value=1.2e-21 Score=183.21 Aligned_cols=134 Identities=19% Similarity=0.133 Sum_probs=97.4
Q ss_pred ccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHH
Q psy496 46 MVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQE 125 (319)
Q Consensus 46 ~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~ 125 (319)
.|+|...+|-++.--.-. ---..+++.|.||||||||++|.+||.+.+..+. -...+.+++.|||+|+.|++..+.++
T Consensus 161 FPVQ~aVlp~ll~~~~~p-~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~-v~~LRavVivPtr~L~~QV~~~f~~~ 238 (620)
T KOG0350|consen 161 FPVQYAVLPSLLEEIRSP-PPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRP-VKRLRAVVIVPTRELALQVYDTFKRL 238 (620)
T ss_pred cchHHHHHHHHHHhhcCC-CCCCCCceEEecCCCCCceeeehhHHHHHHccCC-ccceEEEEEeeHHHHHHHHHHHHHHh
Confidence 489999999886522211 1113578999999999999999999999876543 22467777779999999999999888
Q ss_pred hccccCCCCceEEEEEe-----cccc-cCC----CCceEEEECchHHHHHHhcCC--CCCCccEEEEecccc
Q psy496 126 RDEQCGRPGSSVGYQIR-----LEKE-LPR----KRGSILYCTAGILPEVMQSDP--ILSGVSHIVMDEIHE 185 (319)
Q Consensus 126 ~~~~~~~~g~~vg~~~~-----~~~~-~~~----~~~~Iiv~Tpg~ll~~l~~~~--~l~~v~~vViDEah~ 185 (319)
.... |..|+.... .+.. ... .+.+|+|+|||||++|+.+.+ .|++++++||||||+
T Consensus 239 ~~~t----gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADR 306 (620)
T KOG0350|consen 239 NSGT----GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADR 306 (620)
T ss_pred ccCC----ceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHH
Confidence 6544 444442211 1111 011 245899999999999997544 499999999999997
No 51
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.85 E-value=2.4e-20 Score=191.59 Aligned_cols=167 Identities=23% Similarity=0.294 Sum_probs=121.2
Q ss_pred hHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCC
Q psy496 55 AIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPG 134 (319)
Q Consensus 55 ~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g 134 (319)
.+.++.+.+....++++|+|++|||||||++|++||++.+..... .+.|++.||++||++..++++++.....
T Consensus 71 lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~---a~AL~lYPtnALa~DQ~~rl~~~~~~~~---- 143 (851)
T COG1205 71 LYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPS---ARALLLYPTNALANDQAERLRELISDLP---- 143 (851)
T ss_pred ccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcC---ccEEEEechhhhHhhHHHHHHHHHHhCC----
Confidence 567777777777788999999999999999999999999987664 3555555999999999999999866543
Q ss_pred ceEEEEEecccccC-------CCCceEEEECchHHHHHH-hcCC----CCCCccEEEEecccc-cccchhHHHHHHHhh-
Q psy496 135 SSVGYQIRLEKELP-------RKRGSILYCTAGILPEVM-QSDP----ILSGVSHIVMDEIHE-RSMISDFLLAILKDV- 200 (319)
Q Consensus 135 ~~vg~~~~~~~~~~-------~~~~~Iiv~Tpg~ll~~l-~~~~----~l~~v~~vViDEah~-~~~~~~~~~~~l~~~- 200 (319)
..++...-.++... .+.++|++++|++|..++ .... .++++++||+||+|. +|.+..-+..+++++
T Consensus 144 ~~v~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llRRL~ 223 (851)
T COG1205 144 GKVTFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLRRLL 223 (851)
T ss_pred CcceeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHHHHH
Confidence 23443333222221 245789999999998855 3322 278899999999997 555555444444444
Q ss_pred --hc-cccCceEEEecccc-ChhhHhh-hhCCC
Q psy496 201 --TD-KRKDLKLILMSATL-NAEKFSQ-FFGGA 228 (319)
Q Consensus 201 --~~-~~~~~qiv~lSAT~-~~~~l~~-~l~~~ 228 (319)
.. .+.+.|+|+.|||+ |+..+++ +++..
T Consensus 224 ~~~~~~~~~~q~i~~SAT~~np~e~~~~l~~~~ 256 (851)
T COG1205 224 RRLRRYGSPLQIICTSATLANPGEFAEELFGRD 256 (851)
T ss_pred HHHhccCCCceEEEEeccccChHHHHHHhcCCc
Confidence 33 34478999999999 7777665 44433
No 52
>KOG0334|consensus
Probab=99.85 E-value=8.9e-22 Score=197.85 Aligned_cols=242 Identities=17% Similarity=0.144 Sum_probs=151.9
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhC---CCCccEEEEecccHHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARN---RGSECCIMVTQPRRISAIAIAE 120 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~---~~~~~~vl~~~Ptr~la~q~~~ 120 (319)
++++||.+|||++.+|+++|..+. ||||||.+|.+|++.++..+. .+..+..++++|||+||.|+.+
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvak----------TgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r 456 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAK----------TGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHR 456 (997)
T ss_pred CCcchhhhhcchhccCcceEEeec----------cCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHH
Confidence 467999999999999999888887 999999999999997764321 1223455555699999999999
Q ss_pred HHHHHhccccCCCCceEEEE---Ee--cccccCCCCceEEEECchHHHHHH-hcCCC---CCCccEEEEecccccccchh
Q psy496 121 RVAQERDEQCGRPGSSVGYQ---IR--LEKELPRKRGSILYCTAGILPEVM-QSDPI---LSGVSHIVMDEIHERSMISD 191 (319)
Q Consensus 121 ~~~~~~~~~~~~~g~~vg~~---~~--~~~~~~~~~~~Iiv~Tpg~ll~~l-~~~~~---l~~v~~vViDEah~~~~~~~ 191 (319)
.+.++... + |..+-.. .. ..-......+.|+|+|||++++.+ .+... +..+.++|+||||++ ..+.
T Consensus 457 ~~~kf~k~-l---~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrm-fdmg 531 (997)
T KOG0334|consen 457 EVRKFLKL-L---GIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRM-FDMG 531 (997)
T ss_pred HHHHHHhh-c---CceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhh-heec
Confidence 88877543 2 2222111 11 111111234779999999999999 44433 455559999999973 4666
Q ss_pred HHHHHHHhhhccccCceEEEecccc--ChhhHhhhhCCCCE-EEeCCccc---cceeeeehhhhhhhhhhHHHHHHHHhh
Q psy496 192 FLLAILKDVTDKRKDLKLILMSATL--NAEKFSQFFGGAPI-LHIPGFTY---PVQEYYLEDVLNMTRKDLKLILMSATL 265 (319)
Q Consensus 192 ~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~l~~~~~-i~~~~r~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (319)
+.....+.+...+|+.|++++|||+ ..+.+++-....|+ +.+.++.. .|...+.-. ...+.+......-...
T Consensus 532 fePq~~~Ii~nlrpdrQtvlfSatfpr~m~~la~~vl~~Pveiiv~~~svV~k~V~q~v~V~--~~e~eKf~kL~eLl~e 609 (997)
T KOG0334|consen 532 FEPQITRILQNLRPDRQTVLFSATFPRSMEALARKVLKKPVEIIVGGRSVVCKEVTQVVRVC--AIENEKFLKLLELLGE 609 (997)
T ss_pred cCcccchHHhhcchhhhhhhhhhhhhHHHHHHHHHhhcCCeeEEEccceeEeccceEEEEEe--cCchHHHHHHHHHHHH
Confidence 7777777777788999999999999 45666665444555 44444432 122111111 1012222222211111
Q ss_pred hhhhhccccCCCcEEEeCCccccccccchHhHHHHhHhhccccC
Q psy496 266 NAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMTRTLKRSET 309 (319)
Q Consensus 266 ~~~~~~~~~~g~~LVFlp~R~~~v~~~~~~~~~~~~~~~~~~~~ 309 (319)
.. ..+++||||.....+ ...+-+=+.....|+-+-|-
T Consensus 610 ~~------e~~~tiiFv~~qe~~-d~l~~~L~~ag~~~~slHGg 646 (997)
T KOG0334|consen 610 RY------EDGKTIIFVDKQEKA-DALLRDLQKAGYNCDSLHGG 646 (997)
T ss_pred Hh------hcCCEEEEEcCchHH-HHHHHHHHhcCcchhhhcCC
Confidence 11 278999999988765 33333333333444333333
No 53
>KOG0347|consensus
Probab=99.85 E-value=1.2e-21 Score=184.88 Aligned_cols=177 Identities=21% Similarity=0.218 Sum_probs=116.9
Q ss_pred ccccccchHHHhccCCccccccccccchhhHHHH-HHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHh-------
Q psy496 26 VPQFILDDEIARNRGSECCIMVTQPRRISAIALI-NKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIAR------- 97 (319)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~-~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~------- 97 (319)
+|..++...-+.+|.. +|+||..+||++..| .|+++.+. ||||||+||.+|+++.+...
T Consensus 188 lp~~iL~aL~~~gFs~---Pt~IQsl~lp~ai~gk~DIlGaAe----------TGSGKTLAFGIPiv~~l~~~s~~s~e~ 254 (731)
T KOG0347|consen 188 LPMEILRALSNLGFSR---PTEIQSLVLPAAIRGKVDILGAAE----------TGSGKTLAFGIPIVERLLESSDDSQEL 254 (731)
T ss_pred CCHHHHHHHHhcCCCC---CccchhhcccHhhccchhcccccc----------cCCCceeeecchhhhhhhhccchHhhh
Confidence 3333444333444433 678999999999988 89999888 99999999999999854322
Q ss_pred ----CCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEE-EEecccccCCCCceEEEECchHHHHHHhcCC--
Q psy496 98 ----NRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGY-QIRLEKELPRKRGSILYCTAGILPEVMQSDP-- 170 (319)
Q Consensus 98 ----~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~-~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~-- 170 (319)
.++++...|++.||||||.|+.+-+.......-......+|. .+.-.....+.+++|+|+|||||..++..+.
T Consensus 255 ~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n~~ 334 (731)
T KOG0347|consen 255 SNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDNTH 334 (731)
T ss_pred hhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhhhh
Confidence 233443467777999999999887765533220000112221 1111122233478899999999999995443
Q ss_pred --CCCCccEEEEecccccccchhHH---HHHHHhhh--ccccCceEEEecccc
Q psy496 171 --ILSGVSHIVMDEIHERSMISDFL---LAILKDVT--DKRKDLKLILMSATL 216 (319)
Q Consensus 171 --~l~~v~~vViDEah~~~~~~~~~---~~~l~~~~--~~~~~~qiv~lSAT~ 216 (319)
.+++++++|+||+|+ .+..+.+ ..+++.+. ...+..|.+.||||+
T Consensus 335 l~~~k~vkcLVlDEaDR-mvekghF~Els~lL~~L~e~~~~~qrQTlVFSATl 386 (731)
T KOG0347|consen 335 LGNFKKVKCLVLDEADR-MVEKGHFEELSKLLKHLNEEQKNRQRQTLVFSATL 386 (731)
T ss_pred hhhhhhceEEEEccHHH-HhhhccHHHHHHHHHHhhhhhcccccceEEEEEEe
Confidence 388999999999996 2333333 33334333 134567999999999
No 54
>KOG0951|consensus
Probab=99.85 E-value=6.3e-21 Score=193.14 Aligned_cols=233 Identities=15% Similarity=0.111 Sum_probs=162.2
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCC------CCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEE
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNR------GSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQI 141 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~------~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~ 141 (319)
..+|+++|||||+|||..+++-+++.+..+.+ -...+|+|+.|+++|++.....+.+.+... |..|+-..
T Consensus 324 ~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~----GI~V~ElT 399 (1674)
T KOG0951|consen 324 GDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPL----GITVLELT 399 (1674)
T ss_pred CcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcccc----CcEEEEec
Confidence 45789999999999999999999998865432 124589999999999999988787765433 55565322
Q ss_pred eccc--ccCCCCceEEEECchHHHHHHhcC---CCCCCccEEEEecccc----cccchhHHHHHHHhhh-ccccCceEEE
Q psy496 142 RLEK--ELPRKRGSILYCTAGILPEVMQSD---PILSGVSHIVMDEIHE----RSMISDFLLAILKDVT-DKRKDLKLIL 211 (319)
Q Consensus 142 ~~~~--~~~~~~~~Iiv~Tpg~ll~~l~~~---~~l~~v~~vViDEah~----~~~~~~~~~~~l~~~~-~~~~~~qiv~ 211 (319)
+... ...-+.++++|+||+.---.-+++ ...+-++++||||.|. ||.-.+....+...-. ......|+++
T Consensus 400 gD~~l~~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVaRt~r~ses~~e~~RlVG 479 (1674)
T KOG0951|consen 400 GDSQLGKEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVARTFRRSESTEEGSRLVG 479 (1674)
T ss_pred ccccchhhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHHHHHHHhhhcccCceeee
Confidence 2111 122257889999997542222221 2356799999999986 6655554444433322 2334679999
Q ss_pred ecccc-ChhhHhhhhCCCC--EEEe--CCccccceeeeehhhhhhhhhhHHHH-HHHHhhhhhhhccccCCCcEEEeCCc
Q psy496 212 MSATL-NAEKFSQFFGGAP--ILHI--PGFTYPVQEYYLEDVLNMTRKDLKLI-LMSATLNAEKFSQFFGGAPILHIPGF 285 (319)
Q Consensus 212 lSAT~-~~~~l~~~l~~~~--~i~~--~~r~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~LVFlp~R 285 (319)
+|||+ |.++.+.|+...+ ++.. ..|+.|++..|+.-. ..++..+.. +....+++.... ...+++||||++|
T Consensus 480 LSATLPNy~DV~~Fl~v~~~glf~fd~syRpvPL~qq~Igi~--ek~~~~~~qamNe~~yeKVm~~-agk~qVLVFVHsR 556 (1674)
T KOG0951|consen 480 LSATLPNYEDVASFLRVDPEGLFYFDSSYRPVPLKQQYIGIT--EKKPLKRFQAMNEACYEKVLEH-AGKNQVLVFVHSR 556 (1674)
T ss_pred ecccCCchhhhHHHhccCcccccccCcccCcCCccceEeccc--cCCchHHHHHHHHHHHHHHHHh-CCCCcEEEEEEec
Confidence 99999 9999999987544 4444 567778877777543 223444433 345667664433 3478999999999
Q ss_pred cccccc-cchHhHHHHhHhhccc
Q psy496 286 TYPVQE-YYLEDVLNMTRTLKRS 307 (319)
Q Consensus 286 ~~~v~~-~~~~~~~~~~~~~~~~ 307 (319)
.++.++ ..+-|-+.-.++|.++
T Consensus 557 kET~ktA~aIRd~~le~dtls~f 579 (1674)
T KOG0951|consen 557 KETAKTARAIRDKALEEDTLSRF 579 (1674)
T ss_pred hHHHHHHHHHHHHHhhhhHHHHH
Confidence 999898 5588888888888765
No 55
>KOG0327|consensus
Probab=99.84 E-value=1.5e-21 Score=177.81 Aligned_cols=190 Identities=19% Similarity=0.226 Sum_probs=134.0
Q ss_pred cccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccE
Q psy496 25 QVPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECC 104 (319)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~ 104 (319)
.+++-++...++-.|+. ++.||++||+++..|.|+..+++ +|+|||.+|..++++.+....+..++.
T Consensus 32 ~L~e~LLrgiy~yGFek---PSaIQqraI~p~i~G~dv~~qaq----------sgTgKt~af~i~iLq~iD~~~ke~qal 98 (397)
T KOG0327|consen 32 NLKESLLRGIYAYGFEK---PSAIQQRAILPCIKGHDVIAQAQ----------SGTGKTAAFLISILQQIDMSVKETQAL 98 (397)
T ss_pred CCCHHHHhHHHhhccCC---chHHHhccccccccCCceeEeee----------ccccchhhhHHHHHhhcCcchHHHHHH
Confidence 56777777777777765 45679999988888766555555 999999999999999886655544445
Q ss_pred EEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEe--cccccCCCCceEEEECchHHHHHHhcCCC-CCCccEEEEe
Q psy496 105 IMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIR--LEKELPRKRGSILYCTAGILPEVMQSDPI-LSGVSHIVMD 181 (319)
Q Consensus 105 vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~--~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~-l~~v~~vViD 181 (319)
++. |+|+||.|+.+....+....-......+|.... ..........+|+++|||++.+.+..... ...++++|+|
T Consensus 99 ila--PtreLa~qi~~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlD 176 (397)
T KOG0327|consen 99 ILA--PTRELAQQIQKVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLD 176 (397)
T ss_pred Hhc--chHHHHHHHHHHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHhhccccccccceeEEeec
Confidence 555 999999999965555432211111223332222 11223334578999999999999955544 6679999999
Q ss_pred cccccccchhHHHHHHHhhhccccCceEEEecccc--ChhhHhhhhCCCCE
Q psy496 182 EIHERSMISDFLLAILKDVTDKRKDLKLILMSATL--NAEKFSQFFGGAPI 230 (319)
Q Consensus 182 Eah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~l~~~~~ 230 (319)
|+|++ +..++...+-..+...+++.|++++|||+ +...+.+-|...|+
T Consensus 177 EaDEm-Ls~gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv 226 (397)
T KOG0327|consen 177 EADEM-LSRGFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPV 226 (397)
T ss_pred chHhh-hccchHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCce
Confidence 99984 45556666666666788899999999999 56677776665554
No 56
>KOG4284|consensus
Probab=99.84 E-value=2e-21 Score=186.19 Aligned_cols=188 Identities=18% Similarity=0.205 Sum_probs=132.2
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
+++||.+|||++..+-|++.++. .|+|||++|....++.+..+...++ ++++.||||+|.|+...+.+
T Consensus 48 ptkiQaaAIP~~~~kmDliVQaK----------SGTGKTlVfsv~av~sl~~~~~~~q--~~Iv~PTREiaVQI~~tv~~ 115 (980)
T KOG4284|consen 48 PTKIQAAAIPAIFSKMDLIVQAK----------SGTGKTLVFSVLAVESLDSRSSHIQ--KVIVTPTREIAVQIKETVRK 115 (980)
T ss_pred CCchhhhhhhhhhcccceEEEec----------CCCCceEEEEeeeehhcCcccCcce--eEEEecchhhhhHHHHHHHH
Confidence 57899999999998888665555 9999999999999888876555444 44445999999999988877
Q ss_pred Hhcccc-CCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCC-CCCCccEEEEecccccccchhHHHHHHHhh-h
Q psy496 125 ERDEQC-GRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDP-ILSGVSHIVMDEIHERSMISDFLLAILKDV-T 201 (319)
Q Consensus 125 ~~~~~~-~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vViDEah~~~~~~~~~~~~l~~~-~ 201 (319)
.....- ..+...+|..-...+....+.++|+|+||||+..+...+. +.++++++|+||||.. +..+.+...+..+ .
T Consensus 116 v~~sf~g~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL-~~t~sfq~~In~ii~ 194 (980)
T KOG4284|consen 116 VAPSFTGARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKL-MDTESFQDDINIIIN 194 (980)
T ss_pred hcccccCcceEEEecCchhhhhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhh-hchhhHHHHHHHHHH
Confidence 633211 0002223322222233334578899999999999995554 5899999999999973 4545555555544 4
Q ss_pred ccccCceEEEecccc--Ch-hhHhhhhCCCCEEEeCCcc---ccceeeee
Q psy496 202 DKRKDLKLILMSATL--NA-EKFSQFFGGAPILHIPGFT---YPVQEYYL 245 (319)
Q Consensus 202 ~~~~~~qiv~lSAT~--~~-~~l~~~l~~~~~i~~~~r~---~~v~~~~~ 245 (319)
.++...|++.+|||. |. +.+++|+.++-++....+- +.++.+|.
T Consensus 195 slP~~rQv~a~SATYp~nLdn~Lsk~mrdp~lVr~n~~d~~L~GikQyv~ 244 (980)
T KOG4284|consen 195 SLPQIRQVAAFSATYPRNLDNLLSKFMRDPALVRFNADDVQLFGIKQYVV 244 (980)
T ss_pred hcchhheeeEEeccCchhHHHHHHHHhcccceeecccCCceeechhheee
Confidence 577788999999999 44 3677788777676665442 44555443
No 57
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.84 E-value=2e-20 Score=162.56 Aligned_cols=157 Identities=23% Similarity=0.163 Sum_probs=109.0
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
+.+.|.++++.+.. +++++++||||+|||.++.+|+++.+.........+++++.|+++|+.|..+.+..
T Consensus 22 ~~~~Q~~~~~~~~~----------~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~ 91 (203)
T cd00268 22 PTPIQARAIPPLLS----------GRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARK 91 (203)
T ss_pred CCHHHHHHHHHHhc----------CCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHH
Confidence 45678888877664 56789999999999999999999988775222345788888999999999988877
Q ss_pred HhccccCCCCceEEEEEec----cc-ccCCCCceEEEECchHHHHHHhcCC-CCCCccEEEEecccccccchhHHHHHHH
Q psy496 125 ERDEQCGRPGSSVGYQIRL----EK-ELPRKRGSILYCTAGILPEVMQSDP-ILSGVSHIVMDEIHERSMISDFLLAILK 198 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~----~~-~~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vViDEah~~~~~~~~~~~~l~ 198 (319)
..... +..+...... .. .....+++|+|+||+.+.+.+.+.. .+.+++++|+||+|... ..++......
T Consensus 92 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~-~~~~~~~~~~ 166 (203)
T cd00268 92 LGKHT----NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRML-DMGFEDQIRE 166 (203)
T ss_pred HhccC----CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhh-ccChHHHHHH
Confidence 64321 2232211110 00 1111357899999999999885543 48899999999999732 2222222222
Q ss_pred hhhccccCceEEEecccc
Q psy496 199 DVTDKRKDLKLILMSATL 216 (319)
Q Consensus 199 ~~~~~~~~~qiv~lSAT~ 216 (319)
.+...+++.+++++|||+
T Consensus 167 ~~~~l~~~~~~~~~SAT~ 184 (203)
T cd00268 167 ILKLLPKDRQTLLFSATM 184 (203)
T ss_pred HHHhCCcccEEEEEeccC
Confidence 333344578999999999
No 58
>KOG0332|consensus
Probab=99.83 E-value=1.9e-20 Score=169.76 Aligned_cols=236 Identities=17% Similarity=0.135 Sum_probs=158.0
Q ss_pred cccccccchHHHhccCCccccccccccchhhHHHH--HHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCc
Q psy496 25 QVPQFILDDEIARNRGSECCIMVTQPRRISAIALI--NKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSE 102 (319)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~--~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~ 102 (319)
.+...++...++..|.. ++.||+.|+|.++.. ++++++++ .|+|||+||.+.+|.++......++
T Consensus 96 ~LkPellkgly~M~F~k---PskIQe~aLPlll~~Pp~nlIaQsq----------sGtGKTaaFvL~MLsrvd~~~~~PQ 162 (477)
T KOG0332|consen 96 RLKPELLKGLYAMKFQK---PSKIQETALPLLLAEPPQNLIAQSQ----------SGTGKTAAFVLTMLSRVDPDVVVPQ 162 (477)
T ss_pred CCCHHHHhHHHHhccCC---cchHHHhhcchhhcCCchhhhhhhc----------CCCchhHHHHHHHHHhcCccccCCC
Confidence 34444555566666655 445699999998752 55555555 9999999999999999877665555
Q ss_pred cEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccCC--CCceEEEECchHHHHHHhc--CCCCCCccEE
Q psy496 103 CCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELPR--KRGSILYCTAGILPEVMQS--DPILSGVSHI 178 (319)
Q Consensus 103 ~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~~--~~~~Iiv~Tpg~ll~~l~~--~~~l~~v~~v 178 (319)
+. |+.|+|+||.|+.+.+.+ +|... +....|.++....... -..+|+++|||.+++++.. -.++..++++
T Consensus 163 ~i--CLaPtrELA~Q~~eVv~e-MGKf~---~ita~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvf 236 (477)
T KOG0332|consen 163 CI--CLAPTRELAPQTGEVVEE-MGKFT---ELTASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVF 236 (477)
T ss_pred ce--eeCchHHHHHHHHHHHHH-hcCce---eeeEEEEecCcccccCCcchhheeeCCCccHHHHHHHHHhhChhhceEE
Confidence 54 446999999999986655 44443 5566677775532221 2357999999999999954 3458999999
Q ss_pred EEecccccccchhHHHHHHHhhhccccCceEEEecccc--ChhhHhh-hhCCCCEEEeCCc---cccceeeeehhhhhhh
Q psy496 179 VMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL--NAEKFSQ-FFGGAPILHIPGF---TYPVQEYYLEDVLNMT 252 (319)
Q Consensus 179 ViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~-~l~~~~~i~~~~r---~~~v~~~~~~~~~~~~ 252 (319)
|+||||.+-...++.-..++.....+++.|+++||||. .+..++. .+.++..+.+..+ ..++..+|+....+
T Consensus 237 VlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n~i~Lk~eel~L~~IkQlyv~C~~~-- 314 (477)
T KOG0332|consen 237 VLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNANVIILKREELALDNIKQLYVLCACR-- 314 (477)
T ss_pred EecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCceeeeehhhccccchhhheeeccch--
Confidence 99999963222223334444445566789999999999 4556665 4455555555433 36777778766522
Q ss_pred hhhHHHHHHHHhhhhhhhccccCCCcEEEeCCcccc
Q psy496 253 RKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYP 288 (319)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~ 288 (319)
.+...++.. .+... .-|+.+|||.|+.-+
T Consensus 315 -~~K~~~l~~-lyg~~-----tigqsiIFc~tk~ta 343 (477)
T KOG0332|consen 315 -DDKYQALVN-LYGLL-----TIGQSIIFCHTKATA 343 (477)
T ss_pred -hhHHHHHHH-HHhhh-----hhhheEEEEeehhhH
Confidence 222222222 33321 157899999999765
No 59
>KOG0341|consensus
Probab=99.83 E-value=4.3e-21 Score=174.67 Aligned_cols=222 Identities=16% Similarity=0.112 Sum_probs=139.5
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHH--------HhCCCCccEEEEecccHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEI--------ARNRGSECCIMVTQPRRISAI 116 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~--------~~~~~~~~~vl~~~Ptr~la~ 116 (319)
++|||-+.+|.+++|+|.++.+- ||||||+.|.+|++--.. ..+.++.+.|+| |+||||.
T Consensus 193 PTpIQvQGlPvvLsGRDmIGIAf----------TGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiic--PSRELAr 260 (610)
T KOG0341|consen 193 PTPIQVQGLPVVLSGRDMIGIAF----------TGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIIC--PSRELAR 260 (610)
T ss_pred CCceeecCcceEeecCceeeEEe----------ecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEc--CcHHHHH
Confidence 57999999999999999999888 999999999999864332 234567777887 9999999
Q ss_pred HHHHHHHHHhcccc------CCCCceEE-EEEecccccCCCCceEEEECchHHHHHHhcC-CCCCCccEEEEeccccccc
Q psy496 117 AIAERVAQERDEQC------GRPGSSVG-YQIRLEKELPRKRGSILYCTAGILPEVMQSD-PILSGVSHIVMDEIHERSM 188 (319)
Q Consensus 117 q~~~~~~~~~~~~~------~~~g~~vg-~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~-~~l~~v~~vViDEah~~~~ 188 (319)
|.+.-+..+..... ...+..+| ..++..-.......+|+|+|||+|.+++..+ ..|.-.+++.+||||+ .+
T Consensus 261 Qt~~iie~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADR-mi 339 (610)
T KOG0341|consen 261 QTHDIIEQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADR-MI 339 (610)
T ss_pred HHHHHHHHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHH-Hh
Confidence 99876655432111 00122232 1122222222356799999999999999554 4588899999999996 35
Q ss_pred chhHHHHHHHhhhccccCceEEEecccc--ChhhHhhhhCCCCEEEeCCccccceeeeehhhhhhhhhhHHHHHHHHhhh
Q psy496 189 ISDFLLAILKDVTDKRKDLKLILMSATL--NAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMTRKDLKLILMSATLN 266 (319)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~l~~~~~i~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (319)
+++|-..+...+......+|.++||||+ ..+.|++---..|+..--||--.-....+... + +-..-.+.++-
T Consensus 340 DmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~FAkSALVKPvtvNVGRAGAAsldViQev-E-----yVkqEaKiVyl 413 (610)
T KOG0341|consen 340 DMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNFAKSALVKPVTVNVGRAGAASLDVIQEV-E-----YVKQEAKIVYL 413 (610)
T ss_pred hccchhhHHHHHHHHhhhhheeeeeccccHHHHHHHHhhcccceEEecccccccchhHHHHH-H-----HHHhhhhhhhH
Confidence 6665555544444444577999999999 33444442212233222233222222222111 1 11112234455
Q ss_pred hhhhccccCCCcEEEeCCcc
Q psy496 267 AEKFSQFFGGAPILHIPGFT 286 (319)
Q Consensus 267 ~~~~~~~~~g~~LVFlp~R~ 286 (319)
.+|+.+. .-++|||+.-..
T Consensus 414 LeCLQKT-~PpVLIFaEkK~ 432 (610)
T KOG0341|consen 414 LECLQKT-SPPVLIFAEKKA 432 (610)
T ss_pred HHHhccC-CCceEEEecccc
Confidence 5566654 668999987653
No 60
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.83 E-value=3.1e-20 Score=156.15 Aligned_cols=154 Identities=26% Similarity=0.250 Sum_probs=106.2
Q ss_pred ccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHH
Q psy496 46 MVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQE 125 (319)
Q Consensus 46 ~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~ 125 (319)
||.|.++++.+.. ++++++.||||||||+++.+++++.+.... ..+++++.|+++|+.|..+++...
T Consensus 1 t~~Q~~~~~~i~~----------~~~~li~aptGsGKT~~~~~~~l~~~~~~~---~~~~lii~P~~~l~~q~~~~~~~~ 67 (169)
T PF00270_consen 1 TPLQQEAIEAIIS----------GKNVLISAPTGSGKTLAYILPALNRLQEGK---DARVLIIVPTRALAEQQFERLRKF 67 (169)
T ss_dssp -HHHHHHHHHHHT----------TSEEEEECSTTSSHHHHHHHHHHHHHHTTS---SSEEEEEESSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHc----------CCCEEEECCCCCccHHHHHHHHHhhhccCC---CceEEEEeeccccccccccccccc
Confidence 3568888877653 366899999999999999999998876642 237777789999999999999888
Q ss_pred hccccCCCCceEEEEEeccc------ccCCCCceEEEECchHHHHHHhcC-CCCCCccEEEEecccccccc--hhHHHHH
Q psy496 126 RDEQCGRPGSSVGYQIRLEK------ELPRKRGSILYCTAGILPEVMQSD-PILSGVSHIVMDEIHERSMI--SDFLLAI 196 (319)
Q Consensus 126 ~~~~~~~~g~~vg~~~~~~~------~~~~~~~~Iiv~Tpg~ll~~l~~~-~~l~~v~~vViDEah~~~~~--~~~~~~~ 196 (319)
+... +..+........ .....+++|+|+||+++.+.+... ..+.++++||+||+|..+.. ...+..+
T Consensus 68 ~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i 143 (169)
T PF00270_consen 68 FSNT----NVRVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDETFRAMLKSI 143 (169)
T ss_dssp TTTT----TSSEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHTTHHHHHHHH
T ss_pred cccc----ccccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccccHHHHHHHH
Confidence 6642 222221111110 001135789999999999999653 35667999999999984331 2233333
Q ss_pred HHhhhccccCceEEEeccccC
Q psy496 197 LKDVTDKRKDLKLILMSATLN 217 (319)
Q Consensus 197 l~~~~~~~~~~qiv~lSAT~~ 217 (319)
++.+.. .++.+++++|||++
T Consensus 144 ~~~~~~-~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 144 LRRLKR-FKNIQIILLSATLP 163 (169)
T ss_dssp HHHSHT-TTTSEEEEEESSST
T ss_pred HHHhcC-CCCCcEEEEeeCCC
Confidence 343332 23578999999995
No 61
>KOG0329|consensus
Probab=99.82 E-value=4.8e-20 Score=159.79 Aligned_cols=207 Identities=19% Similarity=0.213 Sum_probs=142.2
Q ss_pred ccccccccccchHHHhc-----cCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHH
Q psy496 22 KTTQVPQFILDDEIARN-----RGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIA 96 (319)
Q Consensus 22 ~~~~~~~~~~~~~~~~~-----~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~ 96 (319)
+|+++.+|++.-..-++ |.- +.-+|..+||....|.+++.++. +|-|||..|.+..++++..
T Consensus 40 hssgfrdfllkpellraivdcgfeh---psevqhecipqailgmdvlcqak----------sgmgktavfvl~tlqqiep 106 (387)
T KOG0329|consen 40 HSSGFRDFLLKPELLRAIVDCGFEH---PSEVQHECIPQAILGMDVLCQAK----------SGMGKTAVFVLATLQQIEP 106 (387)
T ss_pred eccchhhhhcCHHHHHHHHhccCCC---chHhhhhhhhHHhhcchhheecc----------cCCCceeeeehhhhhhcCC
Confidence 34566666654443332 222 23679999999999999888888 9999999999999998876
Q ss_pred hCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEE-----EEEecccccCCCCceEEEECchHHHHHHhcCC-
Q psy496 97 RNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVG-----YQIRLEKELPRKRGSILYCTAGILPEVMQSDP- 170 (319)
Q Consensus 97 ~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg-----~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~- 170 (319)
.. ++..+++++.|||||.|+.+.+..+..... +..+. ..+..+.....+.++|+|+|||+++.+.+++.
T Consensus 107 v~--g~vsvlvmchtrelafqi~~ey~rfskymP---~vkvaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr~k~l 181 (387)
T KOG0329|consen 107 VD--GQVSVLVMCHTRELAFQISKEYERFSKYMP---SVKVSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVRNRSL 181 (387)
T ss_pred CC--CeEEEEEEeccHHHHHHHHHHHHHHHhhCC---CceEEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHHhccC
Confidence 44 356777778999999999776555433222 22221 12222222222357899999999999996655
Q ss_pred CCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc--ChhhHhhhhCCCC-EEEeCCc----cccceee
Q psy496 171 ILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL--NAEKFSQFFGGAP-ILHIPGF----TYPVQEY 243 (319)
Q Consensus 171 ~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~l~~~~-~i~~~~r----~~~v~~~ 243 (319)
.|++++++|+||+|.+--..|+....-+.....+++.|++++|||+ +.+-+++.|...| .+.++.. .+.++.+
T Consensus 182 ~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~ 261 (387)
T KOG0329|consen 182 NLKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQY 261 (387)
T ss_pred chhhcceeehhhHHHHHHHHHHHHHHHHHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHH
Confidence 4999999999999975445556666666666778888999999999 5556666554444 3444332 2445555
Q ss_pred eeh
Q psy496 244 YLE 246 (319)
Q Consensus 244 ~~~ 246 (319)
|..
T Consensus 262 Yvk 264 (387)
T KOG0329|consen 262 YVK 264 (387)
T ss_pred HHh
Confidence 643
No 62
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.81 E-value=6.6e-19 Score=182.19 Aligned_cols=210 Identities=17% Similarity=0.177 Sum_probs=132.7
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
++++.|.++|+.+..+.. .....+.+++||||||||.+++++++..+.... ++++++||++||.|+++.+.
T Consensus 451 ~~T~~Q~~aI~~I~~d~~----~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~-----qvlvLvPT~~LA~Q~~~~f~ 521 (926)
T TIGR00580 451 EETPDQLKAIEEIKADME----SPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGK-----QVAVLVPTTLLAQQHFETFK 521 (926)
T ss_pred CCCHHHHHHHHHHHhhhc----ccCcCCEEEECCCCccHHHHHHHHHHHHHHhCC-----eEEEEeCcHHHHHHHHHHHH
Confidence 467999999999987543 344568999999999999999999998875432 56666799999999999998
Q ss_pred HHhccccCCCCceEEEEEec----ccc-----cCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHH
Q psy496 124 QERDEQCGRPGSSVGYQIRL----EKE-----LPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLL 194 (319)
Q Consensus 124 ~~~~~~~~~~g~~vg~~~~~----~~~-----~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~ 194 (319)
+.+... +..++.-.+. +.. ....+.+|+|+||. ++..+..+++++++||||+|+.+...
T Consensus 522 ~~~~~~----~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~----ll~~~v~f~~L~llVIDEahrfgv~~---- 589 (926)
T TIGR00580 522 ERFANF----PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHK----LLQKDVKFKDLGLLIIDEEQRFGVKQ---- 589 (926)
T ss_pred HHhccC----CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHH----HhhCCCCcccCCEEEeecccccchhH----
Confidence 876542 3333321111 000 01124689999994 23444568999999999999854322
Q ss_pred HHHHhhhccccCceEEEeccccChhhHhhhh-C--CCCEEEeC-CccccceeeeehhhhhhhhhhHHHHHHHHhhhhhhh
Q psy496 195 AILKDVTDKRKDLKLILMSATLNAEKFSQFF-G--GAPILHIP-GFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEKF 270 (319)
Q Consensus 195 ~~l~~~~~~~~~~qiv~lSAT~~~~~l~~~l-~--~~~~i~~~-~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (319)
...+....++.++++||||+.++.+...+ + +..++... ....|++.++.... ....+..+ ... .
T Consensus 590 --~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~R~~V~t~v~~~~----~~~i~~~i----~~e--l 657 (926)
T TIGR00580 590 --KEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPEDRLPVRTFVMEYD----PELVREAI----RRE--L 657 (926)
T ss_pred --HHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCCccceEEEEEecC----HHHHHHHH----HHH--H
Confidence 22233344578999999999666554432 2 22222222 12245665554321 11111111 111 1
Q ss_pred ccccCCCcEEEeCCcccc
Q psy496 271 SQFFGGAPILHIPGFTYP 288 (319)
Q Consensus 271 ~~~~~g~~LVFlp~R~~~ 288 (319)
. .+++++||+|+....
T Consensus 658 ~--~g~qv~if~n~i~~~ 673 (926)
T TIGR00580 658 L--RGGQVFYVHNRIESI 673 (926)
T ss_pred H--cCCeEEEEECCcHHH
Confidence 1 278999999987543
No 63
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.81 E-value=5.5e-19 Score=179.37 Aligned_cols=212 Identities=16% Similarity=0.166 Sum_probs=132.4
Q ss_pred ccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHH
Q psy496 42 ECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAER 121 (319)
Q Consensus 42 ~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~ 121 (319)
+.+++++|.++|+.+..+.+ .....+++++||||||||.+|.+|++..+..+ .++++++||++||.|+++.
T Consensus 259 ~f~lt~~Q~~ai~~I~~d~~----~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g-----~q~lilaPT~~LA~Q~~~~ 329 (681)
T PRK10917 259 PFELTGAQKRVVAEILADLA----SPKPMNRLLQGDVGSGKTVVAALAALAAIEAG-----YQAALMAPTEILAEQHYEN 329 (681)
T ss_pred CCCCCHHHHHHHHHHHHhhh----ccCCceEEEECCCCCcHHHHHHHHHHHHHHcC-----CeEEEEeccHHHHHHHHHH
Confidence 44578999999999987543 33345799999999999999999999876532 3577777999999999999
Q ss_pred HHHHhccccCCCCceEEEEEeccc---------ccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhH
Q psy496 122 VAQERDEQCGRPGSSVGYQIRLEK---------ELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDF 192 (319)
Q Consensus 122 ~~~~~~~~~~~~g~~vg~~~~~~~---------~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~ 192 (319)
+.+.+... |..++....... .......+|+|+||+.+.+ ...+++++++||||+|+.+...
T Consensus 330 l~~l~~~~----~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~v~~~~l~lvVIDE~Hrfg~~q-- 399 (681)
T PRK10917 330 LKKLLEPL----GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD----DVEFHNLGLVIIDEQHRFGVEQ-- 399 (681)
T ss_pred HHHHHhhc----CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc----cchhcccceEEEechhhhhHHH--
Confidence 98876532 334432222111 1112357899999987643 3347899999999999854322
Q ss_pred HHHHHHhhhccccCceEEEeccccChhhHhh-hhCCCCEEEeCCc---cccceeeeehhhhhhhhhhHHHHHHHHhhhhh
Q psy496 193 LLAILKDVTDKRKDLKLILMSATLNAEKFSQ-FFGGAPILHIPGF---TYPVQEYYLEDVLNMTRKDLKLILMSATLNAE 268 (319)
Q Consensus 193 ~~~~l~~~~~~~~~~qiv~lSAT~~~~~l~~-~l~~~~~i~~~~r---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (319)
.. .+.......++++||||+.++.++. .+++..+..+... ..|+...+.... ....+ .....+.
T Consensus 400 -r~---~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~------~~~~~-~~~i~~~- 467 (681)
T PRK10917 400 -RL---ALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPPGRKPITTVVIPDS------RRDEV-YERIREE- 467 (681)
T ss_pred -HH---HHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCCCCCCcEEEEeCcc------cHHHH-HHHHHHH-
Confidence 11 1222233568999999995555443 3444333333322 234555544321 11111 1111111
Q ss_pred hhccccCCCcEEEeCCccc
Q psy496 269 KFSQFFGGAPILHIPGFTY 287 (319)
Q Consensus 269 ~~~~~~~g~~LVFlp~R~~ 287 (319)
.. .+++++||+|....
T Consensus 468 -~~--~g~q~~v~~~~ie~ 483 (681)
T PRK10917 468 -IA--KGRQAYVVCPLIEE 483 (681)
T ss_pred -HH--cCCcEEEEEccccc
Confidence 11 27799999997543
No 64
>KOG0948|consensus
Probab=99.81 E-value=1.6e-19 Score=175.53 Aligned_cols=208 Identities=17% Similarity=0.221 Sum_probs=152.7
Q ss_pred cccCCCccccccc---cccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHH
Q psy496 16 DLAGCGKTTQVPQ---FILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILD 92 (319)
Q Consensus 16 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~ 92 (319)
+-+||.+...+|. |+.- ... ....+++..-.-.+.++. ...+.|..+++.|+++|.|.+|||.++..+|..
T Consensus 94 ~~~~c~HeVavP~~~dY~p~--~~~--~~~~~pAk~YPF~LDpFQ--~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~ 167 (1041)
T KOG0948|consen 94 DREGCRHEVAVPPNYDYTPL--LPK--IFGKPPAKTYPFTLDPFQ--STAIKCIDRGESVLVSAHTSAGKTVVAEYAIAM 167 (1041)
T ss_pred ccccceeeeecCCccccCcc--ccc--cCCCCcccCCCcccCchH--hhhhhhhcCCceEEEEeecCCCcchHHHHHHHH
Confidence 3458888888884 2220 000 111122222333333332 255667888999999999999999999999998
Q ss_pred HHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHH-hcCCC
Q psy496 93 DEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVM-QSDPI 171 (319)
Q Consensus 93 ~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l-~~~~~ 171 (319)
.+..++ ||+|++|-++|.+|-++.+..+++.. |...| +.+.+..+..+|||.++|..++ ++...
T Consensus 168 sLr~kQ-----RVIYTSPIKALSNQKYREl~~EF~DV----GLMTG------DVTInP~ASCLVMTTEILRsMLYRGSEv 232 (1041)
T KOG0948|consen 168 SLREKQ-----RVIYTSPIKALSNQKYRELLEEFKDV----GLMTG------DVTINPDASCLVMTTEILRSMLYRGSEV 232 (1041)
T ss_pred HHHhcC-----eEEeeChhhhhcchhHHHHHHHhccc----ceeec------ceeeCCCCceeeeHHHHHHHHHhccchH
Confidence 887766 99999999999999999999988754 55554 4444456679999999999998 66667
Q ss_pred CCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc-ChhhHhhhhC-----CCCEEEeCCccccceeeee
Q psy496 172 LSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL-NAEKFSQFFG-----GAPILHIPGFTYPVQEYYL 245 (319)
Q Consensus 172 l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~-~~~~l~~~l~-----~~~~i~~~~r~~~v~~~~~ 245 (319)
+..+.|||+||+|-+ -+.+-..-+-.-+.-++++.|.|++|||+ |+..|++|.. .|.+++.+.|+.|++++..
T Consensus 233 mrEVaWVIFDEIHYM-RDkERGVVWEETIIllP~~vr~VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyif 311 (1041)
T KOG0948|consen 233 MREVAWVIFDEIHYM-RDKERGVVWEETIILLPDNVRFVFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIF 311 (1041)
T ss_pred hheeeeEEeeeehhc-cccccceeeeeeEEeccccceEEEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeee
Confidence 999999999999951 11111122233345577899999999999 9999999984 5778999999999987743
No 65
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.80 E-value=2.5e-19 Score=181.36 Aligned_cols=180 Identities=16% Similarity=0.170 Sum_probs=105.3
Q ss_pred chHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEeccc
Q psy496 32 DDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPR 111 (319)
Q Consensus 32 ~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Pt 111 (319)
++.|...-+.+ ++|+|.++||.++.|++ ++++.+|||||||.++..+++. +...... .-++++++||
T Consensus 5 ~~ff~~~~G~~--PtpiQ~~~i~~il~G~~---------~v~~~apTGSGKTaa~aafll~-~~~~~~~-~~rLv~~vPt 71 (844)
T TIGR02621 5 DEWYQGLHGYS--PFPWQLSLAERFVAGQP---------PESCSTPTGLGKTSIIAAWLLA-VEIGAKV-PRRLVYVVNR 71 (844)
T ss_pred HHHHHHHhCCC--CCHHHHHHHHHHHcCCC---------cceEecCCCCcccHHHHHhhcc-ccccccc-cceEEEeCch
Confidence 34455543333 77999999999876542 3666778999999977655552 2222222 2366667899
Q ss_pred HHHHHHHHHHHHHHhcccc-------------------CCCCceEEEEEeccc------ccCCCCceEEEECchHHHHHH
Q psy496 112 RISAIAIAERVAQERDEQC-------------------GRPGSSVGYQIRLEK------ELPRKRGSILYCTAGILPEVM 166 (319)
Q Consensus 112 r~la~q~~~~~~~~~~~~~-------------------~~~g~~vg~~~~~~~------~~~~~~~~Iiv~Tpg~ll~~l 166 (319)
|+||.|+++.+.+...... ......+. .+.++. .....+++|+|+|++.+.+..
T Consensus 72 ReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~-~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~ 150 (844)
T TIGR02621 72 RTVVDQVTEEAEKIGERLPDVPEVEAALWALCSTRPEKKDRPLAIS-TLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRL 150 (844)
T ss_pred HHHHHHHHHHHHHHHHHhcccchhhhhhhhhhccccccccCCeEEE-EEECCCChHHHHHhcCCCCcEEEECHHHHcCCc
Confidence 9999999987776543210 00011111 111111 112346789999975553333
Q ss_pred hcC-------------CCCCCccEEEEecccccccchhHHHHHHHhhhcccc---CceEEEecccc--ChhhHhhhhC
Q psy496 167 QSD-------------PILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRK---DLKLILMSATL--NAEKFSQFFG 226 (319)
Q Consensus 167 ~~~-------------~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~---~~qiv~lSAT~--~~~~l~~~l~ 226 (319)
... ..+++++++|+||||..+.+.+.+..+++.+. .++ +.|+++||||+ +...+...+.
T Consensus 151 L~~gYg~~~~~~pi~ag~L~~v~~LVLDEADLd~gF~~~l~~Il~~l~-rp~~~rprQtLLFSAT~p~ei~~l~~~~~ 227 (844)
T TIGR02621 151 LFSGYGCGFKSRPLHAGFLGQDALIVHDEAHLEPAFQELLKQIMNEQQ-RPPDFLPLRVVELTATSRTDGPDRTTLLS 227 (844)
T ss_pred cccccccccccccchhhhhccceEEEEehhhhccccHHHHHHHHHhcc-cCcccccceEEEEecCCCccHHHHHHHHc
Confidence 210 02688999999999953333333333333221 122 26999999999 3445555554
No 66
>PRK09401 reverse gyrase; Reviewed
Probab=99.80 E-value=5.7e-19 Score=186.58 Aligned_cols=122 Identities=17% Similarity=0.146 Sum_probs=83.7
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
+++++|+.++|.++.| ++++++||||||||+ |.+++...+.. ++ .++++++|||+||.|+++.+.
T Consensus 80 ~pt~iQ~~~i~~il~g----------~dv~i~ApTGsGKT~-f~l~~~~~l~~--~g--~~alIL~PTreLa~Qi~~~l~ 144 (1176)
T PRK09401 80 KPWSLQRTWAKRLLLG----------ESFAIIAPTGVGKTT-FGLVMSLYLAK--KG--KKSYIIFPTRLLVEQVVEKLE 144 (1176)
T ss_pred CCcHHHHHHHHHHHCC----------CcEEEEcCCCCCHHH-HHHHHHHHHHh--cC--CeEEEEeccHHHHHHHHHHHH
Confidence 5678999999998754 457888889999996 55555444332 22 356666699999999999988
Q ss_pred HHhccccCCCCceEEEEEeccc-----------ccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccc
Q psy496 124 QERDEQCGRPGSSVGYQIRLEK-----------ELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHE 185 (319)
Q Consensus 124 ~~~~~~~~~~g~~vg~~~~~~~-----------~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~ 185 (319)
.+.... +..+........ .......+|+|+|||+|.+++. ......++++|+||||.
T Consensus 145 ~l~~~~----~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~-~l~~~~~~~lVvDEaD~ 212 (1176)
T PRK09401 145 KFGEKV----GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD-ELPKKKFDFVFVDDVDA 212 (1176)
T ss_pred HHhhhc----CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH-hccccccCEEEEEChHH
Confidence 875432 222221111110 0112347899999999999886 22345699999999997
No 67
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.80 E-value=4.2e-19 Score=181.41 Aligned_cols=175 Identities=15% Similarity=0.179 Sum_probs=131.9
Q ss_pred HhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEE
Q psy496 61 KCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQ 140 (319)
Q Consensus 61 ~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~ 140 (319)
+.+.+...+++|++|||||||||.+...++..++..+. +++|+.|.++|.+|.++.+...++......|...|
T Consensus 126 ~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~q-----rviYTsPIKALsNQKyrdl~~~fgdv~~~vGL~TG-- 198 (1041)
T COG4581 126 EAIAILERGESVLVCAPTSSGKTVVAEYAIALALRDGQ-----RVIYTSPIKALSNQKYRDLLAKFGDVADMVGLMTG-- 198 (1041)
T ss_pred HHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcCC-----ceEeccchhhhhhhHHHHHHHHhhhhhhhccceec--
Confidence 33444556788999999999999999999888776655 69999999999999999998887744100033333
Q ss_pred EecccccCCCCceEEEECchHHHHHH-hcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc-Ch
Q psy496 141 IRLEKELPRKRGSILYCTAGILPEVM-QSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL-NA 218 (319)
Q Consensus 141 ~~~~~~~~~~~~~Iiv~Tpg~ll~~l-~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~-~~ 218 (319)
+...+..+.++|+|.++|-+++ +....+.++.+||+||+|..+ +.+-...+-..+..++...++|+||||+ |+
T Consensus 199 ----Dv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~-D~eRG~VWEE~Ii~lP~~v~~v~LSATv~N~ 273 (1041)
T COG4581 199 ----DVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIG-DRERGVVWEEVIILLPDHVRFVFLSATVPNA 273 (1041)
T ss_pred ----ceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeecc-ccccchhHHHHHHhcCCCCcEEEEeCCCCCH
Confidence 4444456789999999999998 455679999999999999632 1111112222334456678999999999 99
Q ss_pred hhHhhhhC-----CCCEEEeCCccccceeeeehh
Q psy496 219 EKFSQFFG-----GAPILHIPGFTYPVQEYYLED 247 (319)
Q Consensus 219 ~~l~~~l~-----~~~~i~~~~r~~~v~~~~~~~ 247 (319)
+.|+.|++ +..+++.+.|+.|.+.++...
T Consensus 274 ~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~ 307 (1041)
T COG4581 274 EEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVG 307 (1041)
T ss_pred HHHHHHHHhccCCCeEEEeecCCCCCeEEEEecC
Confidence 99999997 456788899999998876543
No 68
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.80 E-value=2.2e-18 Score=173.71 Aligned_cols=216 Identities=15% Similarity=0.115 Sum_probs=131.3
Q ss_pred ccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHH
Q psy496 42 ECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAER 121 (319)
Q Consensus 42 ~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~ 121 (319)
+.++++.|.++|+.+..+.. .....+.+++||||||||.++++|++..+..+ ..+++++||++||.|+++.
T Consensus 233 pf~lt~~Q~~ai~~I~~~~~----~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g-----~qvlilaPT~~LA~Q~~~~ 303 (630)
T TIGR00643 233 PFKLTRAQKRVVKEILQDLK----SDVPMNRLLQGDVGSGKTLVAALAMLAAIEAG-----YQVALMAPTEILAEQHYNS 303 (630)
T ss_pred CCCCCHHHHHHHHHHHHHhc----cCCCccEEEECCCCCcHHHHHHHHHHHHHHcC-----CcEEEECCHHHHHHHHHHH
Confidence 34578899999999987532 23345789999999999999999999876542 2677777999999999999
Q ss_pred HHHHhccccCCCCceEEEEEeccc---------ccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhH
Q psy496 122 VAQERDEQCGRPGSSVGYQIRLEK---------ELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDF 192 (319)
Q Consensus 122 ~~~~~~~~~~~~g~~vg~~~~~~~---------~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~ 192 (319)
+.+.+... |..++....... .......+|+|+||+.+.+ ...+++++++||||+|+.+....
T Consensus 304 ~~~l~~~~----gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~----~~~~~~l~lvVIDEaH~fg~~qr- 374 (630)
T TIGR00643 304 LRNLLAPL----GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE----KVEFKRLALVIIDEQHRFGVEQR- 374 (630)
T ss_pred HHHHhccc----CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc----cccccccceEEEechhhccHHHH-
Confidence 98876532 333332211100 0112346899999997643 34578999999999998543221
Q ss_pred HHHHHHhhhccccCceEEEeccccChhhHhh-hhCCCCEEEeC---CccccceeeeehhhhhhhhhhHHHHHHHHhhhhh
Q psy496 193 LLAILKDVTDKRKDLKLILMSATLNAEKFSQ-FFGGAPILHIP---GFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAE 268 (319)
Q Consensus 193 ~~~~l~~~~~~~~~~qiv~lSAT~~~~~l~~-~l~~~~~i~~~---~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (319)
. .+........+.++++||||+.++.++. .+++.....+. ....|+...+.... . . ..+.....+.
T Consensus 375 -~-~l~~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~~r~~i~~~~~~~~----~--~-~~~~~~i~~~- 444 (630)
T TIGR00643 375 -K-KLREKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPPGRKPITTVLIKHD----E--K-DIVYEFIEEE- 444 (630)
T ss_pred -H-HHHHhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCCCCCceEEEEeCcc----h--H-HHHHHHHHHH-
Confidence 1 1111111112568999999985554443 23332222222 12245555554321 1 1 1111111111
Q ss_pred hhccccCCCcEEEeCCcccc
Q psy496 269 KFSQFFGGAPILHIPGFTYP 288 (319)
Q Consensus 269 ~~~~~~~g~~LVFlp~R~~~ 288 (319)
+. .+++++||+|.....
T Consensus 445 -l~--~g~q~~v~~~~i~~s 461 (630)
T TIGR00643 445 -IA--KGRQAYVVYPLIEES 461 (630)
T ss_pred -HH--hCCcEEEEEcccccc
Confidence 11 267899999987554
No 69
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.79 E-value=1.2e-18 Score=170.20 Aligned_cols=156 Identities=19% Similarity=0.184 Sum_probs=100.2
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
.+|+|.++||+++.|+ ++++++|||||||++|.+|++.. . ...+++.|+++|+.|..+.+..
T Consensus 12 ~r~~Q~~ai~~~l~g~----------dvlv~apTGsGKTl~y~lp~l~~---~-----~~~lVi~P~~~L~~dq~~~l~~ 73 (470)
T TIGR00614 12 FRPVQLEVINAVLLGR----------DCFVVMPTGGGKSLCYQLPALCS---D-----GITLVISPLISLMEDQVLQLKA 73 (470)
T ss_pred CCHHHHHHHHHHHcCC----------CEEEEcCCCCcHhHHHHHHHHHc---C-----CcEEEEecHHHHHHHHHHHHHH
Confidence 4588999999988654 57888889999999999998742 1 2466677999999998887764
Q ss_pred HhccccCCCCceEEEEEeccc---------ccCCCCceEEEECchHHHHH---HhcCCCCCCccEEEEecccccccch-h
Q psy496 125 ERDEQCGRPGSSVGYQIRLEK---------ELPRKRGSILYCTAGILPEV---MQSDPILSGVSHIVMDEIHERSMIS-D 191 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~---------~~~~~~~~Iiv~Tpg~ll~~---l~~~~~l~~v~~vViDEah~~~~~~-~ 191 (319)
. |........... .......+|+++||+++... +..-....++++|||||||...... +
T Consensus 74 ~--------gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~ 145 (470)
T TIGR00614 74 S--------GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHD 145 (470)
T ss_pred c--------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccc
Confidence 3 222221111100 01123467999999987432 1111135789999999999732111 1
Q ss_pred H--HHHHHHhhhccccCceEEEeccccCh---hhHhhhhC
Q psy496 192 F--LLAILKDVTDKRKDLKLILMSATLNA---EKFSQFFG 226 (319)
Q Consensus 192 ~--~~~~l~~~~~~~~~~qiv~lSAT~~~---~~l~~~l~ 226 (319)
+ ....+..+....++.+++++|||++. +++.++++
T Consensus 146 fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~ 185 (470)
T TIGR00614 146 FRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLN 185 (470)
T ss_pred cHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcC
Confidence 1 11222333344467899999999943 35666664
No 70
>KOG0921|consensus
Probab=99.79 E-value=1.7e-19 Score=177.84 Aligned_cols=205 Identities=40% Similarity=0.731 Sum_probs=184.1
Q ss_pred cCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHH
Q psy496 39 RGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAI 118 (319)
Q Consensus 39 ~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~ 118 (319)
+..+.+.+.-|+..+|+.+....++....+|..++|-+.||+|||+.+...+|+.+..+..+....+.+.+|+|..|+.+
T Consensus 363 ~d~e~~~~~a~re~lpva~~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisi 442 (1282)
T KOG0921|consen 363 RDEALDKITAQREELPVAQYRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISL 442 (1282)
T ss_pred cccchhhhhhhhhhCcHHHHHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHH
Confidence 44445555678889999999999999999999999999999999999999999999988877788899999999999999
Q ss_pred HHHHHHHhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHH
Q psy496 119 AERVAQERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILK 198 (319)
Q Consensus 119 ~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~ 198 (319)
+++++...+... |..+|++.+.++.....-.-|.++|-|.+++.+.+. +..+.++|+||.|+|....++++-+++
T Consensus 443 aerva~er~e~~---g~tvgy~vRf~Sa~prpyg~i~fctvgvllr~~e~g--lrg~sh~i~deiherdv~~dfll~~lr 517 (1282)
T KOG0921|consen 443 AERVANERGEEV---GETCGYNVRFDSATPRPYGSIMFCTVGVLLRMMENG--LRGISHVIIDEIHERDVDTDFVLIVLR 517 (1282)
T ss_pred HHHHHHhhHHhh---cccccccccccccccccccceeeeccchhhhhhhhc--ccccccccchhhhhhccchHHHHHHHH
Confidence 999999988877 999999999888776656679999999999988543 568899999999999999999999999
Q ss_pred hhhccccCceEEEeccccChhhHhhhhCCCCEEEeCCccccceeeeehhh
Q psy496 199 DVTDKRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYYLEDV 248 (319)
Q Consensus 199 ~~~~~~~~~qiv~lSAT~~~~~l~~~l~~~~~i~~~~r~~~v~~~~~~~~ 248 (319)
.+....++++++++|||+|.+.+..||+.++...+.+|.+|++.+|+.+.
T Consensus 518 ~m~~ty~dl~v~lmsatIdTd~f~~~f~~~p~~~~~grt~pvq~F~led~ 567 (1282)
T KOG0921|consen 518 EMISTYRDLRVVLMSATIDTDLFTNFFSSIPDVTVHGRTFPVQSFFLEDI 567 (1282)
T ss_pred hhhccchhhhhhhhhcccchhhhhhhhccccceeeccccccHHHHHHHHh
Confidence 99999999999999999999999999999999999999999987776554
No 71
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.78 E-value=3.1e-18 Score=180.69 Aligned_cols=210 Identities=16% Similarity=0.130 Sum_probs=130.4
Q ss_pred ccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHH
Q psy496 42 ECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAER 121 (319)
Q Consensus 42 ~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~ 121 (319)
+..++++|.++||.+..+.+ .....+++++|+||||||.+++.+++..+.. + .++++++||++||.|+++.
T Consensus 598 ~~~~T~~Q~~aI~~il~d~~----~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~---g--~qvlvLvPT~eLA~Q~~~~ 668 (1147)
T PRK10689 598 PFETTPDQAQAINAVLSDMC----QPLAMDRLVCGDVGFGKTEVAMRAAFLAVEN---H--KQVAVLVPTTLLAQQHYDN 668 (1147)
T ss_pred CCCCCHHHHHHHHHHHHHhh----cCCCCCEEEEcCCCcCHHHHHHHHHHHHHHc---C--CeEEEEeCcHHHHHHHHHH
Confidence 44578999999999988654 4455789999999999999998887766532 2 3566667999999999999
Q ss_pred HHHHhccccCCCCceEEEEEeccc----c-----cCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhH
Q psy496 122 VAQERDEQCGRPGSSVGYQIRLEK----E-----LPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDF 192 (319)
Q Consensus 122 ~~~~~~~~~~~~g~~vg~~~~~~~----~-----~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~ 192 (319)
+.+.+... +..++....... . ....+.+|+|+||+.+ .....+++++++||||+|+.+...
T Consensus 669 f~~~~~~~----~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~~~v~~~~L~lLVIDEahrfG~~~-- 738 (1147)
T PRK10689 669 FRDRFANW----PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----QSDVKWKDLGLLIVDEEHRFGVRH-- 738 (1147)
T ss_pred HHHhhccC----CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----hCCCCHhhCCEEEEechhhcchhH--
Confidence 98766432 223322211111 0 0112468999999743 334457899999999999854321
Q ss_pred HHHHHHhhhccccCceEEEeccccChhhHh--h-hhCCCCEEEeCC-ccccceeeeehhhhhhhhhhHHHHHHHHhhhhh
Q psy496 193 LLAILKDVTDKRKDLKLILMSATLNAEKFS--Q-FFGGAPILHIPG-FTYPVQEYYLEDVLNMTRKDLKLILMSATLNAE 268 (319)
Q Consensus 193 ~~~~l~~~~~~~~~~qiv~lSAT~~~~~l~--~-~l~~~~~i~~~~-r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (319)
...+...+++.|+++||||+.++.+. . .+.+...+..+. ...+++..+.... ....+... ...
T Consensus 739 ----~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r~~v~~~~~~~~----~~~~k~~i----l~e- 805 (1147)
T PRK10689 739 ----KERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYD----SLVVREAI----LRE- 805 (1147)
T ss_pred ----HHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCCCCceEEEEecC----cHHHHHHH----HHH-
Confidence 22334455688999999998444332 2 233333443322 2234554443221 11111111 111
Q ss_pred hhccccCCCcEEEeCCcc
Q psy496 269 KFSQFFGGAPILHIPGFT 286 (319)
Q Consensus 269 ~~~~~~~g~~LVFlp~R~ 286 (319)
+. .+|+++||+|+..
T Consensus 806 -l~--r~gqv~vf~n~i~ 820 (1147)
T PRK10689 806 -IL--RGGQVYYLYNDVE 820 (1147)
T ss_pred -Hh--cCCeEEEEECCHH
Confidence 11 2689999999864
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.78 E-value=3.6e-18 Score=161.18 Aligned_cols=154 Identities=18% Similarity=0.124 Sum_probs=93.5
Q ss_pred cccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhcc
Q psy496 49 QPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDE 128 (319)
Q Consensus 49 Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~ 128 (319)
|.++++.+.++ ++.+++++||||||||.++.+|++.. ..+.+++.|+++|+.|.++++...+..
T Consensus 2 Q~~~~~~~~~~--------~~~~~~i~apTGsGKT~~~~~~~l~~--------~~~~~~~~P~~aL~~~~~~~~~~~~~~ 65 (357)
T TIGR03158 2 QVATFEALQSK--------DADIIFNTAPTGAGKTLAWLTPLLHG--------ENDTIALYPTNALIEDQTEAIKEFVDV 65 (357)
T ss_pred HHHHHHHHHcC--------CCCEEEEECCCCCCHHHHHHHHHHHc--------CCCEEEEeChHHHHHHHHHHHHHHHHh
Confidence 55666665432 23568999999999999999998742 124567779999999999998887632
Q ss_pred ccCCCCceEEEEEecc------------------cc--------cCCCCceEEEECchHHHHHHhc---CC------CCC
Q psy496 129 QCGRPGSSVGYQIRLE------------------KE--------LPRKRGSILYCTAGILPEVMQS---DP------ILS 173 (319)
Q Consensus 129 ~~~~~g~~vg~~~~~~------------------~~--------~~~~~~~Iiv~Tpg~ll~~l~~---~~------~l~ 173 (319)
.....+..+.. ..+. +. .....+.|+++||+.+..+++. .+ .+.
T Consensus 66 ~~~~~~~~v~~-~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~ 144 (357)
T TIGR03158 66 FKPERDVNLLH-VSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYT 144 (357)
T ss_pred cCCCCCceEEE-ecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhc
Confidence 10000111110 0000 00 0012456888999888654432 11 258
Q ss_pred CccEEEEecccccccchh----HHHHHHHhhhccccCceEEEeccccChh
Q psy496 174 GVSHIVMDEIHERSMISD----FLLAILKDVTDKRKDLKLILMSATLNAE 219 (319)
Q Consensus 174 ~v~~vViDEah~~~~~~~----~~~~~l~~~~~~~~~~qiv~lSAT~~~~ 219 (319)
+++++|+||+|..+.... +.+.....+.......+++++|||++..
T Consensus 145 ~~~~iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~ 194 (357)
T TIGR03158 145 KFSTVIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPA 194 (357)
T ss_pred CCCEEEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHH
Confidence 899999999998553221 1223333332222246999999999544
No 73
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.77 E-value=1.9e-18 Score=163.12 Aligned_cols=147 Identities=21% Similarity=0.237 Sum_probs=95.8
Q ss_pred cEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEE------ec-
Q psy496 71 PSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQI------RL- 143 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~------~~- 143 (319)
.++|+||||||||+++++|+++.+.... ..+++++.|+++|+.|+++++...++... |...+... ..
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~~---~~~ii~v~P~~~L~~q~~~~l~~~f~~~~---~~~~~~~~~~~~~~~~~ 74 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQK---ADRVIIALPTRATINAMYRRAKELFGSNL---GLLHSSSSFKRIKEMGD 74 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhCC---CCeEEEEeehHHHHHHHHHHHHHHhCccc---EEeeccHHHHHHhccCC
Confidence 4789999999999999999998754322 34788888999999999999999876432 21111000 00
Q ss_pred ----ccc-----cC---CCCceEEEECchHHHHHHhcCC-----CCC--CccEEEEecccccccc-hhHHHHHHHhhhcc
Q psy496 144 ----EKE-----LP---RKRGSILYCTAGILPEVMQSDP-----ILS--GVSHIVMDEIHERSMI-SDFLLAILKDVTDK 203 (319)
Q Consensus 144 ----~~~-----~~---~~~~~Iiv~Tpg~ll~~l~~~~-----~l~--~v~~vViDEah~~~~~-~~~~~~~l~~~~~~ 203 (319)
+.. .. ....+|+++||+.++..+.... .+. ..+++|+||+|..... .+.+...++.+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~-- 152 (358)
T TIGR01587 75 SEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYTLALILAVLEVLK-- 152 (358)
T ss_pred chhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHH--
Confidence 000 00 0135699999999988875421 111 2389999999984321 223444444443
Q ss_pred ccCceEEEeccccChhhHhhhhC
Q psy496 204 RKDLKLILMSATLNAEKFSQFFG 226 (319)
Q Consensus 204 ~~~~qiv~lSAT~~~~~l~~~l~ 226 (319)
..+.|+++||||++ +.+.+|+.
T Consensus 153 ~~~~~~i~~SATlp-~~l~~~~~ 174 (358)
T TIGR01587 153 DNDVPILLMSATLP-KFLKEYAE 174 (358)
T ss_pred HcCCCEEEEecCch-HHHHHHHh
Confidence 23678999999994 44555553
No 74
>KOG0344|consensus
Probab=99.76 E-value=6.9e-19 Score=167.86 Aligned_cols=226 Identities=16% Similarity=0.130 Sum_probs=140.7
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhC---CCCccEEEEecccHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARN---RGSECCIMVTQPRRISAIAIAER 121 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~---~~~~~~vl~~~Ptr~la~q~~~~ 121 (319)
++|+|+++||.++.++++++|++ ||||||++|.+|++.++.... .....+.+++.|+|+||.|+++.
T Consensus 159 Pt~iq~~aipvfl~~r~~lAcap----------TGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re 228 (593)
T KOG0344|consen 159 PTPIQKQAIPVFLEKRDVLACAP----------TGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYRE 228 (593)
T ss_pred CCcccchhhhhhhcccceEEecc----------CCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHH
Confidence 56889999999998887655555 999999999999999885533 13356778888999999999999
Q ss_pred HHHHh--ccccCCCCceEEEEEe---cc--cccCCCCceEEEECchHHHHHHhcCC---CCCCccEEEEecccccccch-
Q psy496 122 VAQER--DEQCGRPGSSVGYQIR---LE--KELPRKRGSILYCTAGILPEVMQSDP---ILSGVSHIVMDEIHERSMIS- 190 (319)
Q Consensus 122 ~~~~~--~~~~~~~g~~vg~~~~---~~--~~~~~~~~~Iiv~Tpg~ll~~l~~~~---~l~~v~~vViDEah~~~~~~- 190 (319)
+.++. .... ....+.... .. ...+..+.+|++.||.++...+...+ +++++.|+|+||+|.. ...
T Consensus 229 ~~k~~~~~~t~---~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~l-fe~~ 304 (593)
T KOG0344|consen 229 MRKYSIDEGTS---LRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLL-FEPE 304 (593)
T ss_pred HHhcCCCCCCc---hhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhh-hChh
Confidence 88875 2111 111110000 00 01112457899999999999996654 6999999999999972 122
Q ss_pred hHHHHHHHhhhc-cccCceEEEecccc--ChhhHhhhhCCCCE-EEeCCccc---cceeeeehhhhhhhhhhHHHHHHHH
Q psy496 191 DFLLAILKDVTD-KRKDLKLILMSATL--NAEKFSQFFGGAPI-LHIPGFTY---PVQEYYLEDVLNMTRKDLKLILMSA 263 (319)
Q Consensus 191 ~~~~~~l~~~~~-~~~~~qiv~lSAT~--~~~~l~~~l~~~~~-i~~~~r~~---~v~~~~~~~~~~~~~~~~~~~~~~~ 263 (319)
.+.......+.. ..+++++-+||||+ .+++|++-.....+ +.+..++. .|+....... ...-+.++...
T Consensus 305 ~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~~~~~vivg~~~sa~~~V~QelvF~g----se~~K~lA~rq 380 (593)
T KOG0344|consen 305 FFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKSDLKRVIVGLRNSANETVDQELVFCG----SEKGKLLALRQ 380 (593)
T ss_pred hHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhccceeEEEecchhHhhhhhhhheeee----cchhHHHHHHH
Confidence 233332222222 34788999999999 77788876544443 33333332 2222222111 11222222222
Q ss_pred hhhhhhhccccCCCcEEEeCCccccccccc
Q psy496 264 TLNAEKFSQFFGGAPILHIPGFTYPVQEYY 293 (319)
Q Consensus 264 ~~~~~~~~~~~~g~~LVFlp~R~~~v~~~~ 293 (319)
.+. ....-++||||.+-.-+.++++
T Consensus 381 ~v~-----~g~~PP~lIfVQs~eRak~L~~ 405 (593)
T KOG0344|consen 381 LVA-----SGFKPPVLIFVQSKERAKQLFE 405 (593)
T ss_pred HHh-----ccCCCCeEEEEecHHHHHHHHH
Confidence 211 2246789999999555544443
No 75
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.73 E-value=1.8e-17 Score=167.89 Aligned_cols=224 Identities=18% Similarity=0.107 Sum_probs=128.7
Q ss_pred cccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHH
Q psy496 43 CCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 43 ~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
...++.|.++++.+..+. .+++.++.|+||||||.+|+.++.+.+..+ ..++++.|+++|+.|+.+++
T Consensus 143 ~~Lt~~Q~~ai~~i~~~~-------~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g-----~~vLvLvPt~~L~~Q~~~~l 210 (679)
T PRK05580 143 PTLNPEQAAAVEAIRAAA-------GFSPFLLDGVTGSGKTEVYLQAIAEVLAQG-----KQALVLVPEIALTPQMLARF 210 (679)
T ss_pred CCCCHHHHHHHHHHHhcc-------CCCcEEEECCCCChHHHHHHHHHHHHHHcC-----CeEEEEeCcHHHHHHHHHHH
Confidence 345678888888876531 456799999999999999988877665432 25677779999999999999
Q ss_pred HHHhccccCCCCceEEEEEeccc-----ccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchh----HH
Q psy496 123 AQERDEQCGRPGSSVGYQIRLEK-----ELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISD----FL 193 (319)
Q Consensus 123 ~~~~~~~~~~~g~~vg~~~~~~~-----~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~----~~ 193 (319)
.+.++..+ ....|.....+. .......+|+|+|++.+. ..++++++||+||+|..+...+ .-
T Consensus 211 ~~~fg~~v---~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~------~p~~~l~liVvDEeh~~s~~~~~~p~y~ 281 (679)
T PRK05580 211 RARFGAPV---AVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF------LPFKNLGLIIVDEEHDSSYKQQEGPRYH 281 (679)
T ss_pred HHHhCCCE---EEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc------ccccCCCEEEEECCCccccccCcCCCCc
Confidence 88765332 111110000000 011134679999998764 2368899999999997432211 00
Q ss_pred HHHHHhhhccccCceEEEeccccChhhHhhhh-CCCCEEEeCCccc---cceeeeehhhhhhhhhhHHHHHHHHhhhhhh
Q psy496 194 LAILKDVTDKRKDLKLILMSATLNAEKFSQFF-GGAPILHIPGFTY---PVQEYYLEDVLNMTRKDLKLILMSATLNAEK 269 (319)
Q Consensus 194 ~~~l~~~~~~~~~~qiv~lSAT~~~~~l~~~l-~~~~~i~~~~r~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (319)
.-.+........+.+++++|||++.+.+.... |....+....|.. ..++............+ ...+....++...
T Consensus 282 ~r~va~~ra~~~~~~~il~SATps~~s~~~~~~g~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~-~~~ls~~l~~~i~ 360 (679)
T PRK05580 282 ARDLAVVRAKLENIPVVLGSATPSLESLANAQQGRYRLLRLTKRAGGARLPEVEIIDMRELLRGEN-GSFLSPPLLEAIK 360 (679)
T ss_pred HHHHHHHHhhccCCCEEEEcCCCCHHHHHHHhccceeEEEeccccccCCCCeEEEEechhhhhhcc-cCCCCHHHHHHHH
Confidence 00111122233467999999999877766543 2333445554431 11233322100000000 0011112222211
Q ss_pred hccccCCCcEEEeCCcccc
Q psy496 270 FSQFFGGAPILHIPGFTYP 288 (319)
Q Consensus 270 ~~~~~~g~~LVFlp~R~~~ 288 (319)
.....++++|||+|.|+|+
T Consensus 361 ~~l~~g~qvll~~nrrGy~ 379 (679)
T PRK05580 361 QRLERGEQVLLFLNRRGYA 379 (679)
T ss_pred HHHHcCCeEEEEEcCCCCC
Confidence 1112267999999999986
No 76
>PRK14701 reverse gyrase; Provisional
Probab=99.73 E-value=4.3e-17 Score=176.10 Aligned_cols=125 Identities=16% Similarity=0.075 Sum_probs=82.2
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
+++++|+.+||.++.|+ ++++.||||||||+++..+.+... .++ .+++++.||++|+.|+.+.+.
T Consensus 79 ~pt~iQ~~~i~~il~G~----------d~li~APTGsGKTl~~~~~al~~~---~~g--~~aLVl~PTreLa~Qi~~~l~ 143 (1638)
T PRK14701 79 EFWSIQKTWAKRILRGK----------SFSIVAPTGMGKSTFGAFIALFLA---LKG--KKCYIILPTTLLVKQTVEKIE 143 (1638)
T ss_pred CCCHHHHHHHHHHHcCC----------CEEEEEcCCCCHHHHHHHHHHHHH---hcC--CeEEEEECHHHHHHHHHHHHH
Confidence 46789999999998754 467888899999995554443321 122 256666799999999999888
Q ss_pred HHhccccCCCCceEEEEEec---cc------ccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEeccccc
Q psy496 124 QERDEQCGRPGSSVGYQIRL---EK------ELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHER 186 (319)
Q Consensus 124 ~~~~~~~~~~g~~vg~~~~~---~~------~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~ 186 (319)
.+....- .+..+...... .. .......+|+|+|||+|.+.+.... ..+++++|+||||+.
T Consensus 144 ~l~~~~~--~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~-~~~i~~iVVDEAD~m 212 (1638)
T PRK14701 144 SFCEKAN--LDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMK-HLKFDFIFVDDVDAF 212 (1638)
T ss_pred HHHhhcC--CceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHh-hCCCCEEEEECceec
Confidence 7643210 01122111111 00 0111246899999999988764322 267999999999973
No 77
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=99.73 E-value=2.5e-17 Score=165.41 Aligned_cols=163 Identities=17% Similarity=0.152 Sum_probs=102.5
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
.+|+|.++|+.+..| +++++++|||||||++|.+|++.. . ..+++++|+++|+.|..+.+..
T Consensus 26 ~r~~Q~~ai~~il~g----------~dvlv~apTGsGKTl~y~lpal~~---~-----g~tlVisPl~sL~~dqv~~l~~ 87 (607)
T PRK11057 26 FRPGQQEIIDAVLSG----------RDCLVVMPTGGGKSLCYQIPALVL---D-----GLTLVVSPLISLMKDQVDQLLA 87 (607)
T ss_pred CCHHHHHHHHHHHcC----------CCEEEEcCCCchHHHHHHHHHHHc---C-----CCEEEEecHHHHHHHHHHHHHH
Confidence 458899999998754 457888889999999999998743 1 2567777999999998887765
Q ss_pred HhccccCCCCceEEEEEecc---------cccCCCCceEEEECchHHHHHH-hcCCCCCCccEEEEecccccccch-hH-
Q psy496 125 ERDEQCGRPGSSVGYQIRLE---------KELPRKRGSILYCTAGILPEVM-QSDPILSGVSHIVMDEIHERSMIS-DF- 192 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~---------~~~~~~~~~Iiv~Tpg~ll~~l-~~~~~l~~v~~vViDEah~~~~~~-~~- 192 (319)
. |.......... ......+.+++++||+++.... .......++++|||||||...... ++
T Consensus 88 ~--------gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr 159 (607)
T PRK11057 88 N--------GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFR 159 (607)
T ss_pred c--------CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCccc
Confidence 3 22222111100 0011234579999999986422 222224579999999999732111 11
Q ss_pred -HHHHHHhhhccccCceEEEeccccChh---hHhhhhC-CCCEEEe
Q psy496 193 -LLAILKDVTDKRKDLKLILMSATLNAE---KFSQFFG-GAPILHI 233 (319)
Q Consensus 193 -~~~~l~~~~~~~~~~qiv~lSAT~~~~---~l~~~l~-~~~~i~~ 233 (319)
....+..+....++.+++++|||++.. ++.+.++ ..+.+..
T Consensus 160 ~~y~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~ 205 (607)
T PRK11057 160 PEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQI 205 (607)
T ss_pred HHHHHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEE
Confidence 112233344444678899999999432 4555553 2344333
No 78
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=99.72 E-value=2.7e-17 Score=165.03 Aligned_cols=156 Identities=16% Similarity=0.100 Sum_probs=100.7
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
..+.|.++|+++++|+ ++++++|||+|||++|.+|.+.. . ...++++|+++|..|..+.+..
T Consensus 14 fr~~Q~~~i~~il~g~----------dvlv~~PTG~GKTl~y~lpal~~---~-----g~~lVisPl~sL~~dq~~~l~~ 75 (591)
T TIGR01389 14 FRPGQEEIISHVLDGR----------DVLVVMPTGGGKSLCYQVPALLL---K-----GLTVVISPLISLMKDQVDQLRA 75 (591)
T ss_pred CCHHHHHHHHHHHcCC----------CEEEEcCCCccHhHHHHHHHHHc---C-----CcEEEEcCCHHHHHHHHHHHHH
Confidence 4588999999988654 57888889999999999998742 1 2466777999999998887766
Q ss_pred HhccccCCCCceEEEEEe---ccc------ccCCCCceEEEECchHHHHHH-hcCCCCCCccEEEEeccccccc---chh
Q psy496 125 ERDEQCGRPGSSVGYQIR---LEK------ELPRKRGSILYCTAGILPEVM-QSDPILSGVSHIVMDEIHERSM---ISD 191 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~---~~~------~~~~~~~~Iiv~Tpg~ll~~l-~~~~~l~~v~~vViDEah~~~~---~~~ 191 (319)
. |..+..... ... .......+|+++||+++.... .......++++|||||||..+. ...
T Consensus 76 ~--------gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~fr 147 (591)
T TIGR01389 76 A--------GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFR 147 (591)
T ss_pred c--------CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccH
Confidence 3 222221111 100 011234679999999986433 3333356899999999997321 111
Q ss_pred HHHHHHHhhhccccCceEEEeccccCh---hhHhhhhC
Q psy496 192 FLLAILKDVTDKRKDLKLILMSATLNA---EKFSQFFG 226 (319)
Q Consensus 192 ~~~~~l~~~~~~~~~~qiv~lSAT~~~---~~l~~~l~ 226 (319)
-....+..+....++..++++|||.+. .++.++++
T Consensus 148 p~y~~l~~l~~~~~~~~vi~lTAT~~~~~~~~i~~~l~ 185 (591)
T TIGR01389 148 PEYQRLGSLAERFPQVPRIALTATADAETRQDIRELLR 185 (591)
T ss_pred HHHHHHHHHHHhCCCCCEEEEEeCCCHHHHHHHHHHcC
Confidence 112223333333344569999999933 35677775
No 79
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.70 E-value=7.1e-17 Score=170.96 Aligned_cols=124 Identities=16% Similarity=0.129 Sum_probs=82.5
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
.++++|+.++|.+..|+ +++++||||||||+ |.+++...+... + .+++++.|||+||.|+++.+.
T Consensus 78 ~p~~iQ~~~i~~il~G~----------d~vi~ApTGsGKT~-f~l~~~~~l~~~--g--~~vLIL~PTreLa~Qi~~~l~ 142 (1171)
T TIGR01054 78 EPWSIQKMWAKRVLRGD----------SFAIIAPTGVGKTT-FGLAMSLFLAKK--G--KRCYIILPTTLLVIQVAEKIS 142 (1171)
T ss_pred CCcHHHHHHHHHHhCCC----------eEEEECCCCCCHHH-HHHHHHHHHHhc--C--CeEEEEeCHHHHHHHHHHHHH
Confidence 46789999999987654 46777889999997 556666554332 2 367777799999999999888
Q ss_pred HHhccccCCCCceEEEE---Eeccc------ccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccc
Q psy496 124 QERDEQCGRPGSSVGYQ---IRLEK------ELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHE 185 (319)
Q Consensus 124 ~~~~~~~~~~g~~vg~~---~~~~~------~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~ 185 (319)
.+....-.. ...++.. ..... .......+|+|+|||+|.+++..-. .+++++|+||||+
T Consensus 143 ~l~~~~~i~-~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~l~--~~~~~iVvDEaD~ 210 (1171)
T TIGR01054 143 SLAEKAGVG-TVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDELG--PKFDFIFVDDVDA 210 (1171)
T ss_pred HHHHhcCCc-eeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHHhc--CCCCEEEEeChHh
Confidence 775421000 0011101 00000 1111247899999999998875422 1899999999997
No 80
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=99.68 E-value=1.3e-16 Score=164.59 Aligned_cols=157 Identities=19% Similarity=0.113 Sum_probs=96.6
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
..|.|.++|++++.|+| +++.+|||+|||++|.+|++.. . ...|+++|+++|+.+....+..
T Consensus 461 FRp~Q~eaI~aiL~GrD----------VLVimPTGSGKSLcYQLPAL~~---~-----GiTLVISPLiSLmqDQV~~L~~ 522 (1195)
T PLN03137 461 FRPNQREIINATMSGYD----------VFVLMPTGGGKSLTYQLPALIC---P-----GITLVISPLVSLIQDQIMNLLQ 522 (1195)
T ss_pred CCHHHHHHHHHHHcCCC----------EEEEcCCCccHHHHHHHHHHHc---C-----CcEEEEeCHHHHHHHHHHHHHh
Confidence 35889999999876654 7777779999999999999753 1 2577778999999855444433
Q ss_pred HhccccCCCCceEEEEEec---ccc------c--CCCCceEEEECchHHHH------HHhcCCCCCCccEEEEecccccc
Q psy496 125 ERDEQCGRPGSSVGYQIRL---EKE------L--PRKRGSILYCTAGILPE------VMQSDPILSGVSHIVMDEIHERS 187 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~---~~~------~--~~~~~~Iiv~Tpg~ll~------~l~~~~~l~~v~~vViDEah~~~ 187 (319)
. |......... ... . .....+|+++||+++.. .+........+++|||||||...
T Consensus 523 ~--------GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVS 594 (1195)
T PLN03137 523 A--------NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVS 594 (1195)
T ss_pred C--------CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhh
Confidence 2 2222211110 000 0 11346899999999852 22211123458999999999732
Q ss_pred cch-hHHHH--HHHhhhccccCceEEEeccccCh---hhHhhhhCC
Q psy496 188 MIS-DFLLA--ILKDVTDKRKDLKLILMSATLNA---EKFSQFFGG 227 (319)
Q Consensus 188 ~~~-~~~~~--~l~~~~~~~~~~qiv~lSAT~~~---~~l~~~l~~ 227 (319)
-.. ++-.. .+..+....++.+++++|||++. +++.+.++-
T Consensus 595 qWGhDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l 640 (1195)
T PLN03137 595 QWGHDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGL 640 (1195)
T ss_pred hcccchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCC
Confidence 111 12221 12233344457789999999933 356666653
No 81
>KOG0947|consensus
Probab=99.68 E-value=1.1e-16 Score=159.22 Aligned_cols=169 Identities=17% Similarity=0.198 Sum_probs=123.4
Q ss_pred HHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEE
Q psy496 60 NKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGY 139 (319)
Q Consensus 60 ~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~ 139 (319)
+..+.+...+..|+|+|+|.+|||.++..++.-.-.. ..+.+|++|-++|.+|-++.+...++.. |...|
T Consensus 303 k~Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq~h-----~TR~iYTSPIKALSNQKfRDFk~tF~Dv----gLlTG- 372 (1248)
T KOG0947|consen 303 KEAIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQKH-----MTRTIYTSPIKALSNQKFRDFKETFGDV----GLLTG- 372 (1248)
T ss_pred HHHHHHHHcCCeEEEEecCCCCcchHHHHHHHHHHhh-----ccceEecchhhhhccchHHHHHHhcccc----ceeec-
Confidence 3444555667889999999999999998887543222 2489999999999999999999888754 43333
Q ss_pred EEecccccCCCCceEEEECchHHHHHH-hcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc-C
Q psy496 140 QIRLEKELPRKRGSILYCTAGILPEVM-QSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL-N 217 (319)
Q Consensus 140 ~~~~~~~~~~~~~~Iiv~Tpg~ll~~l-~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~-~ 217 (319)
+...+..+.++|||.++|.+++ ++...+.++++||+||+|-.+ +.+-..-+-..+..+++..++|++|||+ |
T Consensus 373 -----DvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiN-D~eRGvVWEEViIMlP~HV~~IlLSATVPN 446 (1248)
T KOG0947|consen 373 -----DVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYIN-DVERGVVWEEVIIMLPRHVNFILLSATVPN 446 (1248)
T ss_pred -----ceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEeeeeecc-cccccccceeeeeeccccceEEEEeccCCC
Confidence 3223345679999999999999 444458999999999999511 1111112223345677899999999999 9
Q ss_pred hhhHhhhhCCC-----CEEEeCCccccceeee
Q psy496 218 AEKFSQFFGGA-----PILHIPGFTYPVQEYY 244 (319)
Q Consensus 218 ~~~l~~~l~~~-----~~i~~~~r~~~v~~~~ 244 (319)
...|++|.|.- .+++...|+.|+++++
T Consensus 447 ~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l 478 (1248)
T KOG0947|consen 447 TLEFADWIGRTKQKTIYVISTSKRPVPLEHYL 478 (1248)
T ss_pred hHHHHHHhhhccCceEEEEecCCCccceEEEE
Confidence 99999999842 2344457888888764
No 82
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.66 E-value=1.4e-16 Score=156.37 Aligned_cols=196 Identities=17% Similarity=0.130 Sum_probs=108.8
Q ss_pred EEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc------c
Q psy496 73 IIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK------E 146 (319)
Q Consensus 73 li~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~------~ 146 (319)
+|.|+||||||++|+..+.+.+.... .++++.|+++|+.|+++++.+.++..+ ....+ ...... .
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~-----~vLvlvP~i~L~~Q~~~~l~~~f~~~v---~vlhs-~~~~~er~~~~~~ 71 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGK-----SVLVLVPEIALTPQMIQRFKYRFGSQV---AVLHS-GLSDSEKLQAWRK 71 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCC-----eEEEEeCcHHHHHHHHHHHHHHhCCcE---EEEEC-CCCHHHHHHHHHH
Confidence 47899999999999776655543322 577777999999999999988765322 10000 000000 0
Q ss_pred cCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHH----HHHHHhhhccccCceEEEeccccChhhHh
Q psy496 147 LPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFL----LAILKDVTDKRKDLKLILMSATLNAEKFS 222 (319)
Q Consensus 147 ~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~----~~~l~~~~~~~~~~qiv~lSAT~~~~~l~ 222 (319)
......+|+|+|+..+. ..++++++|||||+|..+...+-. .-.+........+.++|++|||+..+.+.
T Consensus 72 ~~~g~~~IVVGTrsalf------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsles~~ 145 (505)
T TIGR00595 72 VKNGEILVVIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLESYH 145 (505)
T ss_pred HHcCCCCEEECChHHHc------CcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHHHHH
Confidence 01124679999998664 236889999999999733221100 00011111223467899999999877777
Q ss_pred hhhCCC-CEEEeCCcc----ccceeeeehhhhhhhhhhHHHHHHHHhhhhhhhccccCCCcEEEeCCcccc
Q psy496 223 QFFGGA-PILHIPGFT----YPVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYP 288 (319)
Q Consensus 223 ~~l~~~-~~i~~~~r~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~ 288 (319)
....+. ..+....|. .| .+.+....-......+...+.....+. +. .++++|||+|+|+|+
T Consensus 146 ~~~~g~~~~~~l~~r~~~~~~p-~v~vid~~~~~~~~~ls~~l~~~i~~~--l~--~g~qvLvflnrrGya 211 (505)
T TIGR00595 146 NAKQKAYRLLVLTRRVSGRKPP-EVKLIDMRKEPRQSFLSPELITAIEQT--LA--AGEQSILFLNRRGYS 211 (505)
T ss_pred HHhcCCeEEeechhhhcCCCCC-eEEEEecccccccCCccHHHHHHHHHH--HH--cCCcEEEEEeCCcCC
Confidence 654332 233333222 22 222322100000011111222222222 22 278999999999995
No 83
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.64 E-value=6.7e-16 Score=145.66 Aligned_cols=153 Identities=16% Similarity=0.160 Sum_probs=110.9
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccCC
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELPR 149 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~~ 149 (319)
+|.||+.|||=|||..+.+-+...+...+ . ++++++||+-|+.|.++.+.+.++..........|-....++...+
T Consensus 30 ~NtLvvlPTGLGKT~IA~~V~~~~l~~~~---~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~i~~ltGev~p~~R~~~w 105 (542)
T COG1111 30 KNTLVVLPTGLGKTFIAAMVIANRLRWFG---G-KVLFLAPTKPLVLQHAEFCRKVTGIPEDEIAALTGEVRPEEREELW 105 (542)
T ss_pred cCeEEEecCCccHHHHHHHHHHHHHHhcC---C-eEEEecCCchHHHHHHHHHHHHhCCChhheeeecCCCChHHHHHHH
Confidence 58999999999999999888887765433 2 7999999999999999999998876431112222211123334445
Q ss_pred CCceEEEECchHHHHHH-hcCCCCCCccEEEEecccccccchh-HHHHHHHhhhccccCceEEEecccc--ChhhHhhhh
Q psy496 150 KRGSILYCTAGILPEVM-QSDPILSGVSHIVMDEIHERSMISD-FLLAILKDVTDKRKDLKLILMSATL--NAEKFSQFF 225 (319)
Q Consensus 150 ~~~~Iiv~Tpg~ll~~l-~~~~~l~~v~~vViDEah~~~~~~~-~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~l 225 (319)
.+.+|+|+||+.+.+-+ .+..++.++.++|+||||+ ...+ ....+.+.......+.++++||||+ +.+.+.+-.
T Consensus 106 ~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHR--AvGnyAYv~Va~~y~~~~k~~~ilgLTASPGs~~ekI~eV~ 183 (542)
T COG1111 106 AKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHR--AVGNYAYVFVAKEYLRSAKNPLILGLTASPGSDLEKIQEVV 183 (542)
T ss_pred hhCCEEEeccHHHHhHHhcCccChHHceEEEechhhh--ccCcchHHHHHHHHHHhccCceEEEEecCCCCCHHHHHHHH
Confidence 67889999999998877 5555699999999999997 2223 2333334444445577999999999 777777765
Q ss_pred CCC
Q psy496 226 GGA 228 (319)
Q Consensus 226 ~~~ 228 (319)
.+.
T Consensus 184 ~nL 186 (542)
T COG1111 184 ENL 186 (542)
T ss_pred HhC
Confidence 543
No 84
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.60 E-value=1.7e-14 Score=122.84 Aligned_cols=163 Identities=26% Similarity=0.228 Sum_probs=107.0
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
..+.|.++++.+.+.. +++++++|||||||.++..++++.+.... ..+++++.|++.++.|..+++..
T Consensus 9 ~~~~Q~~~~~~~~~~~---------~~~~i~~~~GsGKT~~~~~~~~~~~~~~~---~~~~l~~~p~~~~~~~~~~~~~~ 76 (201)
T smart00487 9 LRPYQKEAIEALLSGL---------RDVILAAPTGSGKTLAALLPALEALKRGK---GKRVLVLVPTRELAEQWAEELKK 76 (201)
T ss_pred CCHHHHHHHHHHHcCC---------CcEEEECCCCCchhHHHHHHHHHHhcccC---CCcEEEEeCCHHHHHHHHHHHHH
Confidence 4566777776654321 67999999999999999999888765432 23688888999999999988887
Q ss_pred HhccccCCCCceEEEEEecccc-----cCCCCc-eEEEECchHHHHHHhcCC-CCCCccEEEEeccccccc--chhHHHH
Q psy496 125 ERDEQCGRPGSSVGYQIRLEKE-----LPRKRG-SILYCTAGILPEVMQSDP-ILSGVSHIVMDEIHERSM--ISDFLLA 195 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~~-----~~~~~~-~Iiv~Tpg~ll~~l~~~~-~l~~v~~vViDEah~~~~--~~~~~~~ 195 (319)
...... +.... ....... ....+. +++++|++.+.+.+.... ....++++|+||+|.... .......
T Consensus 77 ~~~~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~~~~~~~~~ 152 (201)
T smart00487 77 LGPSLG---LKVVG-LYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDGGFGDQLEK 152 (201)
T ss_pred HhccCC---eEEEE-EeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcCCcHHHHHH
Confidence 654311 01111 1111110 011223 899999999999986544 577899999999998432 2222222
Q ss_pred HHHhhhccccCceEEEecccc--ChhhHhhhhC
Q psy496 196 ILKDVTDKRKDLKLILMSATL--NAEKFSQFFG 226 (319)
Q Consensus 196 ~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~l~ 226 (319)
.+. ..++..+++++|||+ +.......+.
T Consensus 153 ~~~---~~~~~~~~v~~saT~~~~~~~~~~~~~ 182 (201)
T smart00487 153 LLK---LLPKNVQLLLLSATPPEEIENLLELFL 182 (201)
T ss_pred HHH---hCCccceEEEEecCCchhHHHHHHHhc
Confidence 222 234567899999999 4555554443
No 85
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.59 E-value=2.9e-14 Score=114.50 Aligned_cols=138 Identities=28% Similarity=0.252 Sum_probs=91.6
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccccc--
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKEL-- 147 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~-- 147 (319)
+++++.+|||||||..+..++........ ..++++++|++.++.+..+.+...... +..+..........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~---~~~~lv~~p~~~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~ 72 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLK---GGQVLVLAPTRELANQVAERLKELFGE-----GIKVGYLIGGTSIKQQ 72 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhccc---CCCEEEEcCcHHHHHHHHHHHHHHhhC-----CcEEEEEecCcchhHH
Confidence 36899999999999999888877654322 347888889999999998888776542 12222222222211
Q ss_pred ---CCCCceEEEECchHHHHHHhcCC-CCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 148 ---PRKRGSILYCTAGILPEVMQSDP-ILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 148 ---~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
.....+|+++|++.+.+.+.... ....++++|+||+|........... ...........+++++|||+
T Consensus 73 ~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~-~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 73 EKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLG-LKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred HHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHH-HHHHhhCCccceEEEEeccC
Confidence 12467899999999988885443 3567999999999973222211111 11222234566899999995
No 86
>KOG0354|consensus
Probab=99.58 E-value=7.8e-15 Score=145.37 Aligned_cols=156 Identities=18% Similarity=0.156 Sum_probs=103.6
Q ss_pred HHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEE
Q psy496 60 NKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGY 139 (319)
Q Consensus 60 ~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~ 139 (319)
.+++..+- ++|++|++|||+|||.++...+++++.... +++|++++|++-|..|....+...... . . ..+
T Consensus 68 ~eivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p---~~KiVF~aP~~pLv~QQ~a~~~~~~~~-~---~-~T~- 137 (746)
T KOG0354|consen 68 EELVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRP---KGKVVFLAPTRPLVNQQIACFSIYLIP-Y---S-VTG- 137 (746)
T ss_pred HHHhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCC---cceEEEeeCCchHHHHHHHHHhhccCc-c---c-cee-
Confidence 45555566 889999999999999999999998876544 469999999999998887555544221 1 0 111
Q ss_pred EEec-----ccccCCCCceEEEECchHHHHHHhcCC--CCCCccEEEEecccccccchh-HHHHHHHhhhccc-cCceEE
Q psy496 140 QIRL-----EKELPRKRGSILYCTAGILPEVMQSDP--ILSGVSHIVMDEIHERSMISD-FLLAILKDVTDKR-KDLKLI 210 (319)
Q Consensus 140 ~~~~-----~~~~~~~~~~Iiv~Tpg~ll~~l~~~~--~l~~v~~vViDEah~~~~~~~-~~~~~l~~~~~~~-~~~qiv 210 (319)
.... .........+++|+||..+.+.++... .|+.+.++|+||||+- ... ..-.+++...... ...|++
T Consensus 138 ~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra--~kn~~Y~~Vmr~~l~~k~~~~qIL 215 (746)
T KOG0354|consen 138 QLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRT--SKNHPYNNIMREYLDLKNQGNQIL 215 (746)
T ss_pred eccCccCCCchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccc--cccccHHHHHHHHHHhhhccccEE
Confidence 1111 111112356899999999988885432 2789999999999971 111 1222232222221 233999
Q ss_pred Eecccc--ChhhHhhhhCC
Q psy496 211 LMSATL--NAEKFSQFFGG 227 (319)
Q Consensus 211 ~lSAT~--~~~~l~~~l~~ 227 (319)
++|||+ +.+.+.++..+
T Consensus 216 gLTASpG~~~~~v~~~I~~ 234 (746)
T KOG0354|consen 216 GLTASPGSKLEQVQNVIDN 234 (746)
T ss_pred EEecCCCccHHHHHHHHHh
Confidence 999999 67777766543
No 87
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.56 E-value=4.6e-15 Score=150.44 Aligned_cols=128 Identities=16% Similarity=0.141 Sum_probs=92.5
Q ss_pred cCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHH
Q psy496 39 RGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAI 118 (319)
Q Consensus 39 ~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~ 118 (319)
+..+|..+|+|.++||.+..++++++.++ ||||||++|.+|++..+.... .++++.|+++||.|.
T Consensus 87 ~~~p~~~tp~qvQ~I~~i~l~~gvIAeaq----------TGeGKTLAf~LP~l~~aL~g~-----~v~IVTpTrELA~Qd 151 (970)
T PRK12899 87 YHQQWDMVPYDVQILGAIAMHKGFITEMQ----------TGEGKTLTAVMPLYLNALTGK-----PVHLVTVNDYLAQRD 151 (970)
T ss_pred ccCCCCCChHHHHHhhhhhcCCCeEEEeC----------CCCChHHHHHHHHHHHHhhcC-----CeEEEeCCHHHHHHH
Confidence 34556678999999999987766555555 999999999999998776432 245556999999999
Q ss_pred HHHHHHHhccccCCCCceEEEEEecc---cccCCCCceEEEECchHH-HHHHhcCC-CCC-------CccEEEEecccc
Q psy496 119 AERVAQERDEQCGRPGSSVGYQIRLE---KELPRKRGSILYCTAGIL-PEVMQSDP-ILS-------GVSHIVMDEIHE 185 (319)
Q Consensus 119 ~~~~~~~~~~~~~~~g~~vg~~~~~~---~~~~~~~~~Iiv~Tpg~l-l~~l~~~~-~l~-------~v~~vViDEah~ 185 (319)
++.+....... |..++....+. .....-+++|+|+|||+| +++++.+. .++ .+.++||||||.
T Consensus 152 ae~m~~L~k~l----GLsV~~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADs 226 (970)
T PRK12899 152 CEWVGSVLRWL----GLTTGVLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDS 226 (970)
T ss_pred HHHHHHHHhhc----CCeEEEEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhh
Confidence 99877765432 55555433211 111112578999999999 99996653 344 458999999997
No 88
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.55 E-value=1.4e-14 Score=142.67 Aligned_cols=146 Identities=11% Similarity=0.014 Sum_probs=94.2
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
.+.+.|.++++.++. +.+.++++|||||||.++... ........ ..++++++||++|+.|..+++.
T Consensus 114 ~~r~~Q~~av~~~l~----------~~~~il~apTGsGKT~i~~~l-~~~~~~~~---~~~vLilvpt~eL~~Q~~~~l~ 179 (501)
T PHA02558 114 EPHWYQYDAVYEGLK----------NNRRLLNLPTSAGKSLIQYLL-SRYYLENY---EGKVLIIVPTTSLVTQMIDDFV 179 (501)
T ss_pred CCCHHHHHHHHHHHh----------cCceEEEeCCCCCHHHHHHHH-HHHHHhcC---CCeEEEEECcHHHHHHHHHHHH
Confidence 345678888776553 345788999999999876442 22222222 2367777799999999999988
Q ss_pred HHhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhcc
Q psy496 124 QERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDK 203 (319)
Q Consensus 124 ~~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~ 203 (319)
+...... ..++ .+..+... ....+|+|+||+++.+... ..++++++||+||||.. ....+..+++.+
T Consensus 180 ~~~~~~~----~~~~-~i~~g~~~-~~~~~I~VaT~qsl~~~~~--~~~~~~~~iIvDEaH~~--~~~~~~~il~~~--- 246 (501)
T PHA02558 180 DYRLFPR----EAMH-KIYSGTAK-DTDAPIVVSTWQSAVKQPK--EWFDQFGMVIVDECHLF--TGKSLTSIITKL--- 246 (501)
T ss_pred Hhccccc----ccee-EEecCccc-CCCCCEEEeeHHHHhhchh--hhccccCEEEEEchhcc--cchhHHHHHHhh---
Confidence 7643221 1111 11111111 1246799999999876542 24789999999999973 333333333332
Q ss_pred ccCceEEEecccc
Q psy496 204 RKDLKLILMSATL 216 (319)
Q Consensus 204 ~~~~qiv~lSAT~ 216 (319)
++..++++||||+
T Consensus 247 ~~~~~~lGLTATp 259 (501)
T PHA02558 247 DNCKFKFGLTGSL 259 (501)
T ss_pred hccceEEEEeccC
Confidence 2345799999999
No 89
>PRK13766 Hef nuclease; Provisional
Probab=99.52 E-value=5.4e-14 Score=145.52 Aligned_cols=144 Identities=15% Similarity=0.142 Sum_probs=95.9
Q ss_pred cEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc-----
Q psy496 71 PSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK----- 145 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~----- 145 (319)
+++|++|||+|||.++.+++...+.. ...++++++|+++|+.|..+.+.+.++.. +..+.. +.++.
T Consensus 31 n~lv~~ptG~GKT~~a~~~i~~~l~~----~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~----~~~v~~-~~g~~~~~~r 101 (773)
T PRK13766 31 NTLVVLPTGLGKTAIALLVIAERLHK----KGGKVLILAPTKPLVEQHAEFFRKFLNIP----EEKIVV-FTGEVSPEKR 101 (773)
T ss_pred CeEEEcCCCccHHHHHHHHHHHHHHh----CCCeEEEEeCcHHHHHHHHHHHHHHhCCC----CceEEE-EeCCCCHHHH
Confidence 79999999999999998888876632 13478888899999999999888876532 112221 11111
Q ss_pred ccCCCCceEEEECchHHHHHHhc-CCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc--ChhhHh
Q psy496 146 ELPRKRGSILYCTAGILPEVMQS-DPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL--NAEKFS 222 (319)
Q Consensus 146 ~~~~~~~~Iiv~Tpg~ll~~l~~-~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~ 222 (319)
.....+.+|+++||+.+...+.. ...+.+++++|+||||+.... .....+.+......+..++++||||+ +.+.+.
T Consensus 102 ~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~-~~~~~i~~~~~~~~~~~~il~lTaTP~~~~~~i~ 180 (773)
T PRK13766 102 AELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGN-YAYVYIAERYHEDAKNPLVLGLTASPGSDEEKIK 180 (773)
T ss_pred HHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcccccc-ccHHHHHHHHHhcCCCCEEEEEEcCCCCCHHHHH
Confidence 11123567999999999877744 445889999999999973211 11112223333334456899999998 444444
Q ss_pred hh
Q psy496 223 QF 224 (319)
Q Consensus 223 ~~ 224 (319)
+.
T Consensus 181 ~~ 182 (773)
T PRK13766 181 EV 182 (773)
T ss_pred HH
Confidence 43
No 90
>PRK09694 helicase Cas3; Provisional
Probab=99.50 E-value=3.3e-13 Score=138.95 Aligned_cols=147 Identities=24% Similarity=0.240 Sum_probs=88.8
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCC--CCceEEEEE----
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGR--PGSSVGYQI---- 141 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~--~g~~vg~~~---- 141 (319)
+++.++|.||||||||++++.+... +...+ ...++++..||++.++++++++.+.+...... .+..-|...
T Consensus 300 ~pgl~ileApTGsGKTEAAL~~A~~-l~~~~--~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~~~v~L~Hg~a~l~~~ 376 (878)
T PRK09694 300 QPGLTIIEAPTGSGKTEAALAYAWR-LIDQG--LADSIIFALPTQATANAMLSRLEALASKLFPSPNLILAHGNSRFNHL 376 (878)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHH-HHHhC--CCCeEEEECcHHHHHHHHHHHHHHHHHHhcCCCceEeecCcchhhhh
Confidence 4678999999999999998776554 33322 23478999999999999999987643211100 000001000
Q ss_pred -----ecc--------cc-------c-CCCC---ceEEEECchHHHHHHhcCC--CCCC----ccEEEEecccccccchh
Q psy496 142 -----RLE--------KE-------L-PRKR---GSILYCTAGILPEVMQSDP--ILSG----VSHIVMDEIHERSMISD 191 (319)
Q Consensus 142 -----~~~--------~~-------~-~~~~---~~Iiv~Tpg~ll~~l~~~~--~l~~----v~~vViDEah~~~~~~~ 191 (319)
..+ .. . ..++ ++|+|+|.+.++.-....+ .+.. -++|||||+|.....+.
T Consensus 377 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~svvIiDEVHAyD~ym~ 456 (878)
T PRK09694 377 FQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRSVLIVDEVHAYDAYMY 456 (878)
T ss_pred hhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccCeEEEechhhCCHHHH
Confidence 000 00 0 0111 5799999988875442221 1222 35899999998655544
Q ss_pred -HHHHHHHhhhccccCceEEEeccccChh
Q psy496 192 -FLLAILKDVTDKRKDLKLILMSATLNAE 219 (319)
Q Consensus 192 -~~~~~l~~~~~~~~~~qiv~lSAT~~~~ 219 (319)
++...++.+... ...+|+||||++..
T Consensus 457 ~lL~~~L~~l~~~--g~~vIllSATLP~~ 483 (878)
T PRK09694 457 GLLEAVLKAQAQA--GGSVILLSATLPAT 483 (878)
T ss_pred HHHHHHHHHHHhc--CCcEEEEeCCCCHH
Confidence 445555554443 34699999999543
No 91
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.48 E-value=7.9e-13 Score=106.92 Aligned_cols=133 Identities=21% Similarity=0.222 Sum_probs=85.8
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccC
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELP 148 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~ 148 (319)
++.-+|-..+|||||.-++--++......+ .++|++.|||.++..+.+.+.. ..+.+....-....
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~~~----~rvLvL~PTRvva~em~~aL~~----------~~~~~~t~~~~~~~ 69 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIKRR----LRVLVLAPTRVVAEEMYEALKG----------LPVRFHTNARMRTH 69 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHHTT------EEEEESSHHHHHHHHHHTTT----------SSEEEESTTSS---
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHHcc----CeEEEecccHHHHHHHHHHHhc----------CCcccCceeeeccc
Confidence 455677888999999976665555444433 3788888999999998887743 33333333221122
Q ss_pred CCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 149 RKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 149 ~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
..+.-|-++|.+.+.+.+.....+.+++++|+||+|..+...-...+.++..... ...++|++|||+
T Consensus 70 ~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~-g~~~~i~mTATP 136 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAES-GEAKVIFMTATP 136 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHT-TS-EEEEEESS-
T ss_pred cCCCcccccccHHHHHHhcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhc-cCeeEEEEeCCC
Confidence 2345689999999988886655689999999999998555555555666665443 345899999998
No 92
>KOG0951|consensus
Probab=99.47 E-value=1.9e-13 Score=139.65 Aligned_cols=220 Identities=13% Similarity=0.109 Sum_probs=150.5
Q ss_pred cccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHh
Q psy496 47 VTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQER 126 (319)
Q Consensus 47 ~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~ 126 (319)
++|.+..+.+ -+.|.+|+++||+|||||.++.++++. .....+++++.|..+.+...++.|.+.+
T Consensus 1146 ~iqtqVf~~~---------y~~nd~v~vga~~gsgkt~~ae~a~l~------~~~~~~~vyi~p~~~i~~~~~~~w~~~f 1210 (1674)
T KOG0951|consen 1146 PIQTQVFTSL---------YNTNDNVLVGAPNGSGKTACAELALLR------PDTIGRAVYIAPLEEIADEQYRDWEKKF 1210 (1674)
T ss_pred CceEEEEeee---------ecccceEEEecCCCCchhHHHHHHhcC------CccceEEEEecchHHHHHHHHHHHHHhh
Confidence 5666666554 235688999999999999999999876 2345699999999999999988888777
Q ss_pred ccccCCCCceEEEEEecccccC---CCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccc----cchhHHHHHHHh
Q psy496 127 DEQCGRPGSSVGYQIRLEKELP---RKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERS----MISDFLLAILKD 199 (319)
Q Consensus 127 ~~~~~~~g~~vg~~~~~~~~~~---~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~----~~~~~~~~~l~~ 199 (319)
+... |..+. ...++...+ ..+.+++++||...-.+ + ..+.++++|.||+|+.| ...+.+.+....
T Consensus 1211 ~~~~---G~~~~-~l~ge~s~~lkl~~~~~vii~tpe~~d~l-q---~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~i 1282 (1674)
T KOG0951|consen 1211 SKLL---GLRIV-KLTGETSLDLKLLQKGQVIISTPEQWDLL-Q---SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYI 1282 (1674)
T ss_pred cccc---CceEE-ecCCccccchHHhhhcceEEechhHHHHH-h---hhhhcceEeeehhhhhcccCCceEEEEeeHHHH
Confidence 6543 54442 111222111 24678999999976544 2 56889999999999844 222244443333
Q ss_pred hhccccCceEEEecccc-ChhhHhhhhCCCCEEE--eCCccccceeeeehhhhhhhhhhHHH-HHHHHhhhhhhhccccC
Q psy496 200 VTDKRKDLKLILMSATL-NAEKFSQFFGGAPILH--IPGFTYPVQEYYLEDVLNMTRKDLKL-ILMSATLNAEKFSQFFG 275 (319)
Q Consensus 200 ~~~~~~~~qiv~lSAT~-~~~~l~~~l~~~~~i~--~~~r~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 275 (319)
.....+++|++.+|-.+ |..++ -.+....+++ +..|+.|.++++....+. ...-+. .+....+.+..-....+
T Consensus 1283 a~q~~k~ir~v~ls~~lana~d~-ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~--~~~~~~~am~~~~~~ai~~~a~~~ 1359 (1674)
T KOG0951|consen 1283 ASQLEKKIRVVALSSSLANARDL-IGASSSGVFNFSPSVRPVPLEIHIQSVDIS--HFESRMLAMTKPTYTAIVRHAGNR 1359 (1674)
T ss_pred HHHHHhheeEEEeehhhccchhh-ccccccceeecCcccCCCceeEEEEEeccc--hhHHHHHHhhhhHHHHHHHHhcCC
Confidence 33455688999999999 98888 3333444544 456888888887765422 333333 34456666655444458
Q ss_pred CCcEEEeCCcccccccc
Q psy496 276 GAPILHIPGFTYPVQEY 292 (319)
Q Consensus 276 g~~LVFlp~R~~~v~~~ 292 (319)
++.+||+|+|..+..+.
T Consensus 1360 k~~~vf~p~rk~~~~~a 1376 (1674)
T KOG0951|consen 1360 KPAIVFLPTRKHARLVA 1376 (1674)
T ss_pred CCeEEEeccchhhhhhh
Confidence 89999999999876553
No 93
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.40 E-value=1.1e-11 Score=112.39 Aligned_cols=167 Identities=17% Similarity=0.189 Sum_probs=110.6
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
.++-|+.+-.. ++....+.+..+|+|-||+|||+...-.+-..+..++ +|.+.+|+...+..++.++..
T Consensus 98 Ls~~Q~~as~~------l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~-----~vciASPRvDVclEl~~Rlk~ 166 (441)
T COG4098 98 LSPGQKKASNQ------LVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGG-----RVCIASPRVDVCLELYPRLKQ 166 (441)
T ss_pred cChhHHHHHHH------HHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCC-----eEEEecCcccchHHHHHHHHH
Confidence 34556655433 3444566788999999999999987666655544433 888889999999999999988
Q ss_pred HhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchh-HHHHHHHhhhcc
Q psy496 125 ERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISD-FLLAILKDVTDK 203 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~-~~~~~l~~~~~~ 203 (319)
.+... .+. .-+++..+..+++++|+|...|++.- +.++++||||+|......+ .+....+...+
T Consensus 167 aF~~~------~I~--~Lyg~S~~~fr~plvVaTtHQLlrFk------~aFD~liIDEVDAFP~~~d~~L~~Av~~ark- 231 (441)
T COG4098 167 AFSNC------DID--LLYGDSDSYFRAPLVVATTHQLLRFK------QAFDLLIIDEVDAFPFSDDQSLQYAVKKARK- 231 (441)
T ss_pred hhccC------Cee--eEecCCchhccccEEEEehHHHHHHH------hhccEEEEeccccccccCCHHHHHHHHHhhc-
Confidence 76522 121 22333333446889999999999876 4689999999998654444 33333443333
Q ss_pred ccCceEEEeccccChhhHhhhh-CCCCEEEeCCccc
Q psy496 204 RKDLKLILMSATLNAEKFSQFF-GGAPILHIPGFTY 238 (319)
Q Consensus 204 ~~~~qiv~lSAT~~~~~l~~~l-~~~~~i~~~~r~~ 238 (319)
++--+|.+|||...+.-.+.. ++...+.++.|.+
T Consensus 232 -~~g~~IylTATp~k~l~r~~~~g~~~~~klp~RfH 266 (441)
T COG4098 232 -KEGATIYLTATPTKKLERKILKGNLRILKLPARFH 266 (441)
T ss_pred -ccCceEEEecCChHHHHHHhhhCCeeEeecchhhc
Confidence 234578999998433333332 3334466666654
No 94
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.38 E-value=1.2e-12 Score=111.03 Aligned_cols=154 Identities=16% Similarity=0.091 Sum_probs=89.8
Q ss_pred ccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHH
Q psy496 46 MVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQE 125 (319)
Q Consensus 46 ~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~ 125 (319)
.+.|.+++..+...-+ ....+.++++.+|||||||.++...+.+.. . ++++++|+..++.|....+...
T Consensus 5 r~~Q~~ai~~i~~~~~---~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-~-------~~l~~~p~~~l~~Q~~~~~~~~ 73 (184)
T PF04851_consen 5 RPYQQEAIARIINSLE---NKKEERRVLLNAPTGSGKTIIALALILELA-R-------KVLIVAPNISLLEQWYDEFDDF 73 (184)
T ss_dssp -HHHHHHHHHHHHHHH---TTSGCSEEEEEESTTSSHHHHHHHHHHHHH-C-------EEEEEESSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH---hcCCCCCEEEEECCCCCcChhhhhhhhccc-c-------ceeEecCHHHHHHHHHHHHHHh
Confidence 3567777766654322 223568899999999999988876554432 2 6777779999999999888544
Q ss_pred hccccCCC-----CceEE-E-E-----EecccccCCCCceEEEECchHHHHHHhcCC------------CCCCccEEEEe
Q psy496 126 RDEQCGRP-----GSSVG-Y-Q-----IRLEKELPRKRGSILYCTAGILPEVMQSDP------------ILSGVSHIVMD 181 (319)
Q Consensus 126 ~~~~~~~~-----g~~vg-~-~-----~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~------------~l~~v~~vViD 181 (319)
........ ....+ . . .............+.+.|.+.+........ .....++||+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~D 153 (184)
T PF04851_consen 74 GSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIID 153 (184)
T ss_dssp STTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEE
T ss_pred hhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEe
Confidence 32111000 00000 0 0 000011112355699999999877763211 13567999999
Q ss_pred cccccccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 182 EIHERSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 182 Eah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
|+|...... ....+++ .+...+|+||||+
T Consensus 154 EaH~~~~~~-~~~~i~~-----~~~~~~l~lTATp 182 (184)
T PF04851_consen 154 EAHHYPSDS-SYREIIE-----FKAAFILGLTATP 182 (184)
T ss_dssp TGGCTHHHH-HHHHHHH-----SSCCEEEEEESS-
T ss_pred hhhhcCCHH-HHHHHHc-----CCCCeEEEEEeCc
Confidence 999732222 1222222 3455799999997
No 95
>KOG0950|consensus
Probab=99.37 E-value=6e-12 Score=126.47 Aligned_cols=216 Identities=21% Similarity=0.187 Sum_probs=125.0
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEE-EEEeccc
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVG-YQIRLEK 145 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg-~~~~~~~ 145 (319)
.+++|.+.++||+.|||++..+.++......++ .++.+.|....++.-...+..+... . |..+. |.-+...
T Consensus 238 ~e~~nliys~Pts~gktlvaeilml~~~l~~rr----~~llilp~vsiv~Ek~~~l~~~~~~-~---G~~ve~y~g~~~p 309 (1008)
T KOG0950|consen 238 LERKNLIYSLPTSAGKTLVAEILMLREVLCRRR----NVLLILPYVSIVQEKISALSPFSID-L---GFPVEEYAGRFPP 309 (1008)
T ss_pred hcccceEEeCCCccchHHHHHHHHHHHHHHHhh----ceeEecceeehhHHHHhhhhhhccc-c---CCcchhhcccCCC
Confidence 467889999999999999999999988876654 3444446555444433333333211 1 33221 1111111
Q ss_pred ccCCCCceEEEECchHH---HHHHhcCCCCCCccEEEEecccc-----cccchhHHHHHHHhhhccccCceEEEecccc-
Q psy496 146 ELPRKRGSILYCTAGIL---PEVMQSDPILSGVSHIVMDEIHE-----RSMISDFLLAILKDVTDKRKDLKLILMSATL- 216 (319)
Q Consensus 146 ~~~~~~~~Iiv~Tpg~l---l~~l~~~~~l~~v~~vViDEah~-----~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~- 216 (319)
....++..+.++|-+.- .+.+-....+..+++||+||.|. ||...+.++.-+-.... ....|+|+||||+
T Consensus 310 ~~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~~~-~~~~~iIGMSATi~ 388 (1008)
T KOG0950|consen 310 EKRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYENL-ETSVQIIGMSATIP 388 (1008)
T ss_pred CCcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHhcc-ccceeEeeeecccC
Confidence 22224567999997544 44443334577899999999997 55555554444433332 2237899999999
Q ss_pred ChhhHhhhhCCCCEEEeCCccccceeeeehhhhhh---hhhhHHHHHH---HHhh--h----hhhhcc-c-cCCCcEEEe
Q psy496 217 NAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNM---TRKDLKLILM---SATL--N----AEKFSQ-F-FGGAPILHI 282 (319)
Q Consensus 217 ~~~~l~~~l~~~~~i~~~~r~~~v~~~~~~~~~~~---~~~~~~~~~~---~~~~--~----~~~~~~-~-~~g~~LVFl 282 (319)
|...+++||. +.+....-|+.|...+......-. ....++.+.. +..- + +..+.+ . .+.++|||+
T Consensus 389 N~~lL~~~L~-A~~y~t~fRPv~L~E~ik~G~~i~~~~r~~~lr~ia~l~~~~~g~~dpD~~v~L~tet~~e~~~~lvfc 467 (1008)
T KOG0950|consen 389 NNSLLQDWLD-AFVYTTRFRPVPLKEYIKPGSLIYESSRNKVLREIANLYSSNLGDEDPDHLVGLCTETAPEGSSVLVFC 467 (1008)
T ss_pred ChHHHHHHhh-hhheecccCcccchhccCCCcccccchhhHHHHHhhhhhhhhcccCCCcceeeehhhhhhcCCeEEEEc
Confidence 9999999996 444555566666655543322111 1122222221 1100 1 000111 1 145599999
Q ss_pred CCcccccccc
Q psy496 283 PGFTYPVQEY 292 (319)
Q Consensus 283 p~R~~~v~~~ 292 (319)
|+|..|..+.
T Consensus 468 ~sk~~ce~~a 477 (1008)
T KOG0950|consen 468 PSKKNCENVA 477 (1008)
T ss_pred CcccchHHHH
Confidence 9999885544
No 96
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.33 E-value=6.9e-12 Score=126.14 Aligned_cols=224 Identities=17% Similarity=0.115 Sum_probs=127.9
Q ss_pred ccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHH
Q psy496 46 MVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQE 125 (319)
Q Consensus 46 ~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~ 125 (319)
...|+.+...+... .......++.|.||||||.+|+-.+-+.+..+. .+|++.|-.+|..|+.+++...
T Consensus 200 n~~Q~~a~~~i~~~------~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~Gk-----qvLvLVPEI~Ltpq~~~rf~~r 268 (730)
T COG1198 200 NQEQQAAVEAILSS------LGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGK-----QVLVLVPEIALTPQLLARFKAR 268 (730)
T ss_pred CHHHHHHHHHHHHh------cccccceeEeCCCCCcHHHHHHHHHHHHHHcCC-----EEEEEeccccchHHHHHHHHHH
Confidence 34566665555442 133467999999999999999888777665443 4455559999999999999999
Q ss_pred hccccCCCCceEEEEEecc--cccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchh---HH-HHHHHh
Q psy496 126 RDEQCGRPGSSVGYQIRLE--KELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISD---FL-LAILKD 199 (319)
Q Consensus 126 ~~~~~~~~g~~vg~~~~~~--~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~---~~-~~~l~~ 199 (319)
++..+......++...+.+ ........+|+++|=--++ ..++++++|||||-|+-+.-.+ .. .-.+..
T Consensus 269 Fg~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARdvA~ 342 (730)
T COG1198 269 FGAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARDVAV 342 (730)
T ss_pred hCCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc------CchhhccEEEEeccccccccCCcCCCcCHHHHHH
Confidence 8855421111111111100 0111245678888854322 1378999999999997221111 00 000011
Q ss_pred hhccccCceEEEeccccChhhHhhhhCC-CCEEEeCCccc---cceeeeehhhhhhhhhhHHHHHHHHhhhhhhhccccC
Q psy496 200 VTDKRKDLKLILMSATLNAEKFSQFFGG-APILHIPGFTY---PVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFFG 275 (319)
Q Consensus 200 ~~~~~~~~qiv~lSAT~~~~~l~~~l~~-~~~i~~~~r~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (319)
......+..+|+-|||+..+.+..-..+ ...+....|.. +.++.++..-......+. .+....+++.......+
T Consensus 343 ~Ra~~~~~pvvLgSATPSLES~~~~~~g~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~--~lS~~Ll~~i~~~l~~g 420 (730)
T COG1198 343 LRAKKENAPVVLGSATPSLESYANAESGKYKLLRLTNRAGRARLPRVEIIDMRKEPLETGR--SLSPALLEAIRKTLERG 420 (730)
T ss_pred HHHHHhCCCEEEecCCCCHHHHHhhhcCceEEEEccccccccCCCcceEEeccccccccCc--cCCHHHHHHHHHHHhcC
Confidence 1111225689999999988888776544 34455555544 344444433211111110 02222333322222238
Q ss_pred CCcEEEeCCcccc
Q psy496 276 GAPILHIPGFTYP 288 (319)
Q Consensus 276 g~~LVFlp~R~~~ 288 (319)
.++|+|+|.|+|.
T Consensus 421 eQ~llflnRRGys 433 (730)
T COG1198 421 EQVLLFLNRRGYA 433 (730)
T ss_pred CeEEEEEccCCcc
Confidence 8999999999996
No 97
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.33 E-value=1.4e-12 Score=130.85 Aligned_cols=130 Identities=19% Similarity=0.067 Sum_probs=88.6
Q ss_pred HhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHH
Q psy496 36 ARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISA 115 (319)
Q Consensus 36 ~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la 115 (319)
+..|.-...+.++|..+.+++..|. +..++||+|||+++.+|++-....+. .+.++.||++||
T Consensus 48 a~~R~lg~~p~~vQlig~~~l~~G~------------Iaem~TGeGKTLva~lpa~l~aL~G~-----~V~VvTpt~~LA 110 (745)
T TIGR00963 48 ASKRVLGMRPFDVQLIGGIALHKGK------------IAEMKTGEGKTLTATLPAYLNALTGK-----GVHVVTVNDYLA 110 (745)
T ss_pred HHHHHhCCCccchHHhhhhhhcCCc------------eeeecCCCccHHHHHHHHHHHHHhCC-----CEEEEcCCHHHH
Confidence 3333334445677877777665433 44455999999999999953333322 355556999999
Q ss_pred HHHHHHHHHHhccccCCCCceEEEEEeccc---ccCCCCceEEEECchHH-HHHHhcC-------CCCCCccEEEEeccc
Q psy496 116 IAIAERVAQERDEQCGRPGSSVGYQIRLEK---ELPRKRGSILYCTAGIL-PEVMQSD-------PILSGVSHIVMDEIH 184 (319)
Q Consensus 116 ~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~---~~~~~~~~Iiv~Tpg~l-l~~l~~~-------~~l~~v~~vViDEah 184 (319)
.|.++.+...+... |..++......+ ......++|+++||++| +++++.+ ..+.++.++||||+|
T Consensus 111 ~qdae~~~~l~~~L----GLsv~~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaD 186 (745)
T TIGR00963 111 QRDAEWMGQVYRFL----GLSVGLILSGMSPEERREAYACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVD 186 (745)
T ss_pred HHHHHHHHHHhccC----CCeEEEEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHH
Confidence 99999888876543 666664443211 11112478999999999 8888544 247889999999999
Q ss_pred cc
Q psy496 185 ER 186 (319)
Q Consensus 185 ~~ 186 (319)
..
T Consensus 187 s~ 188 (745)
T TIGR00963 187 SI 188 (745)
T ss_pred HH
Confidence 73
No 98
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.31 E-value=3.4e-11 Score=118.26 Aligned_cols=181 Identities=19% Similarity=0.222 Sum_probs=117.5
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
+.|--|.+++.-|.. |+- ++..=+=+|+|.-|||||.++.++++..+..+. ++-.+ .||-.||.|.++.+.
T Consensus 262 ~LT~aQ~~vi~EI~~--Dl~--~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~---Q~ALM--APTEILA~QH~~~~~ 332 (677)
T COG1200 262 KLTNAQKRVIKEILA--DLA--SPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGY---QAALM--APTEILAEQHYESLR 332 (677)
T ss_pred CccHHHHHHHHHHHh--hhc--CchhhHHHhccCcCCCHHHHHHHHHHHHHHcCC---eeEEe--ccHHHHHHHHHHHHH
Confidence 345557777665543 221 122234578999999999999999998776533 44444 499999999999999
Q ss_pred HHhccccCCCCceEEEEEe---ccc------ccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHH
Q psy496 124 QERDEQCGRPGSSVGYQIR---LEK------ELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLL 194 (319)
Q Consensus 124 ~~~~~~~~~~g~~vg~~~~---~~~------~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~ 194 (319)
+.+... |..++.-.. ... ...+...+|+|+|.- +++.+..++++.++|+||-|++|....
T Consensus 333 ~~l~~~----~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA----LiQd~V~F~~LgLVIiDEQHRFGV~QR--- 401 (677)
T COG1200 333 KWLEPL----GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA----LIQDKVEFHNLGLVIIDEQHRFGVHQR--- 401 (677)
T ss_pred HHhhhc----CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch----hhhcceeecceeEEEEeccccccHHHH---
Confidence 887643 334442221 111 011234689999987 445566789999999999999776542
Q ss_pred HHHHhhhcccc-CceEEEeccccChhhHh-hhhCCCCEEEeCCcc---ccceeeeehh
Q psy496 195 AILKDVTDKRK-DLKLILMSATLNAEKFS-QFFGGAPILHIPGFT---YPVQEYYLED 247 (319)
Q Consensus 195 ~~l~~~~~~~~-~~qiv~lSAT~~~~~l~-~~l~~~~~i~~~~r~---~~v~~~~~~~ 247 (319)
..+..... .+-+++||||+=+..++ ..|++-.+..++..| .|+.+.....
T Consensus 402 ---~~L~~KG~~~Ph~LvMTATPIPRTLAlt~fgDldvS~IdElP~GRkpI~T~~i~~ 456 (677)
T COG1200 402 ---LALREKGEQNPHVLVMTATPIPRTLALTAFGDLDVSIIDELPPGRKPITTVVIPH 456 (677)
T ss_pred ---HHHHHhCCCCCcEEEEeCCCchHHHHHHHhccccchhhccCCCCCCceEEEEecc
Confidence 12222223 45689999999555544 567776665554433 5777766654
No 99
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.28 E-value=4.5e-12 Score=128.76 Aligned_cols=122 Identities=18% Similarity=0.120 Sum_probs=83.6
Q ss_pred cccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHH
Q psy496 43 CCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 43 ~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
..+.++|..+++++.+|+ +..+.||+|||+++.+|++.....+. .+.++.||++||.|.++.+
T Consensus 77 ~~p~~vQl~~~~~l~~G~------------Iaem~TGeGKTL~a~lp~~l~al~G~-----~v~VvTpt~~LA~qd~e~~ 139 (790)
T PRK09200 77 MRPYDVQLIGALVLHEGN------------IAEMQTGEGKTLTATMPLYLNALEGK-----GVHLITVNDYLAKRDAEEM 139 (790)
T ss_pred CCCchHHHHhHHHHcCCc------------eeeecCCCcchHHHHHHHHHHHHcCC-----CeEEEeCCHHHHHHHHHHH
Confidence 345577887777765443 44555999999999999985544432 3555559999999999988
Q ss_pred HHHhccccCCCCceEEEEEeccc----ccCCCCceEEEECchHH-HHHHhc----C---CCCCCccEEEEecccc
Q psy496 123 AQERDEQCGRPGSSVGYQIRLEK----ELPRKRGSILYCTAGIL-PEVMQS----D---PILSGVSHIVMDEIHE 185 (319)
Q Consensus 123 ~~~~~~~~~~~g~~vg~~~~~~~----~~~~~~~~Iiv~Tpg~l-l~~l~~----~---~~l~~v~~vViDEah~ 185 (319)
...+... |..+|....... ......++|+++||+++ .+.++. . ..+.++.++|+||+|.
T Consensus 140 ~~l~~~l----Gl~v~~i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDs 210 (790)
T PRK09200 140 GQVYEFL----GLTVGLNFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDS 210 (790)
T ss_pred HHHHhhc----CCeEEEEeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEecccc
Confidence 8776543 666664443221 11113578999999988 444321 1 2468899999999996
No 100
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.27 E-value=5.3e-12 Score=125.80 Aligned_cols=126 Identities=21% Similarity=0.112 Sum_probs=88.3
Q ss_pred cCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHH
Q psy496 39 RGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAI 118 (319)
Q Consensus 39 ~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~ 118 (319)
+.-...++++|..++|++++|+ ++.++ ||+|||++|.+|++.....+. .++++.||++||.|.
T Consensus 98 R~lg~~p~~VQ~~~~~~ll~G~--Iae~~----------TGeGKTla~~lp~~~~al~G~-----~v~VvTptreLA~qd 160 (656)
T PRK12898 98 RVLGQRHFDVQLMGGLALLSGR--LAEMQ----------TGEGKTLTATLPAGTAALAGL-----PVHVITVNDYLAERD 160 (656)
T ss_pred HHhCCCCChHHHHHHHHHhCCC--eeeee----------CCCCcHHHHHHHHHHHhhcCC-----eEEEEcCcHHHHHHH
Confidence 3445556799999999999877 66666 999999999999998765432 566666999999999
Q ss_pred HHHHHHHhccccCCCCceEEEEEecccc---cCCCCceEEEECchHH-HHHHhcC-------------------------
Q psy496 119 AERVAQERDEQCGRPGSSVGYQIRLEKE---LPRKRGSILYCTAGIL-PEVMQSD------------------------- 169 (319)
Q Consensus 119 ~~~~~~~~~~~~~~~g~~vg~~~~~~~~---~~~~~~~Iiv~Tpg~l-l~~l~~~------------------------- 169 (319)
++.+..++... |..++......+. .....++|+++|..-+ .+.++.+
T Consensus 161 ae~~~~l~~~l----Glsv~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~ 236 (656)
T PRK12898 161 AELMRPLYEAL----GLTVGCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRST 236 (656)
T ss_pred HHHHHHHHhhc----CCEEEEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchh
Confidence 99888876543 6666644332111 1113678999998555 3333111
Q ss_pred -CCCCCccEEEEecccc
Q psy496 170 -PILSGVSHIVMDEIHE 185 (319)
Q Consensus 170 -~~l~~v~~vViDEah~ 185 (319)
.....+.+.||||+|.
T Consensus 237 ~~v~r~~~~aIvDEvDS 253 (656)
T PRK12898 237 QLLLRGLHFAIVDEADS 253 (656)
T ss_pred hhcccccceeEeecccc
Confidence 1245688999999995
No 101
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.26 E-value=3.6e-11 Score=116.61 Aligned_cols=148 Identities=17% Similarity=0.118 Sum_probs=92.2
Q ss_pred ccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHH
Q psy496 42 ECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAER 121 (319)
Q Consensus 42 ~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~ 121 (319)
...+.+.|++++..+..-.+ .++..+++.|||+|||..+...+-.. .. .+++++|+++|+.|.++.
T Consensus 34 ~~~lr~yQ~~al~a~~~~~~------~~~~gvivlpTGaGKT~va~~~~~~~---~~-----~~Lvlv~~~~L~~Qw~~~ 99 (442)
T COG1061 34 EFELRPYQEEALDALVKNRR------TERRGVIVLPTGAGKTVVAAEAIAEL---KR-----STLVLVPTKELLDQWAEA 99 (442)
T ss_pred CCCCcHHHHHHHHHHHhhcc------cCCceEEEeCCCCCHHHHHHHHHHHh---cC-----CEEEEECcHHHHHHHHHH
Confidence 34455778888777654111 16778999999999998876655332 11 266666999999999877
Q ss_pred HHHHhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHH-hcCCCCCCccEEEEecccccccchhHHHHHHHhh
Q psy496 122 VAQERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVM-QSDPILSGVSHIVMDEIHERSMISDFLLAILKDV 200 (319)
Q Consensus 122 ~~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l-~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~ 200 (319)
+...+... ..+| ....+...... ..|.|+|.+.+.+.- .......++++||+||+|.. -.+........+
T Consensus 100 ~~~~~~~~-----~~~g-~~~~~~~~~~~-~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~--~a~~~~~~~~~~ 170 (442)
T COG1061 100 LKKFLLLN-----DEIG-IYGGGEKELEP-AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHL--PAPSYRRILELL 170 (442)
T ss_pred HHHhcCCc-----cccc-eecCceeccCC-CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccC--CcHHHHHHHHhh
Confidence 77665432 0112 11111111111 459999999988752 22222347999999999983 333333333433
Q ss_pred hccccCce-EEEecccc
Q psy496 201 TDKRKDLK-LILMSATL 216 (319)
Q Consensus 201 ~~~~~~~q-iv~lSAT~ 216 (319)
.. .. +++||||+
T Consensus 171 ~~----~~~~LGLTATp 183 (442)
T COG1061 171 SA----AYPRLGLTATP 183 (442)
T ss_pred hc----ccceeeeccCc
Confidence 32 23 89999997
No 102
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.25 E-value=1.1e-11 Score=125.11 Aligned_cols=105 Identities=19% Similarity=0.191 Sum_probs=73.4
Q ss_pred EEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc------
Q psy496 72 SIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK------ 145 (319)
Q Consensus 72 vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~------ 145 (319)
.++.++||+|||++|.+|++....... .++++.|+++||.|.++.+....... |..++.......
T Consensus 86 ~Iaem~TGeGKTLta~Lpa~l~aL~g~-----~V~VVTpn~yLA~Rdae~m~~l~~~L----GLsv~~~~~~s~~~~~~~ 156 (762)
T TIGR03714 86 NIAEMKTGEGKTLTATMPLYLNALTGK-----GAMLVTTNDYLAKRDAEEMGPVYEWL----GLTVSLGVVDDPDEEYDA 156 (762)
T ss_pred ceeEecCCcchHHHHHHHHHHHhhcCC-----ceEEeCCCHHHHHHHHHHHHHHHhhc----CCcEEEEECCCCccccCH
Confidence 466777999999999999876554432 46777799999999998876665433 556654332100
Q ss_pred --ccCCCCceEEEECchHH-HHHHh----c---CCCCCCccEEEEecccc
Q psy496 146 --ELPRKRGSILYCTAGIL-PEVMQ----S---DPILSGVSHIVMDEIHE 185 (319)
Q Consensus 146 --~~~~~~~~Iiv~Tpg~l-l~~l~----~---~~~l~~v~~vViDEah~ 185 (319)
......++|+++||++| .+.+. . ...+.++.++|+||||.
T Consensus 157 ~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDs 206 (762)
T TIGR03714 157 NEKRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDS 206 (762)
T ss_pred HHHHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhh
Confidence 11113678999999999 44442 1 22378899999999996
No 103
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.25 E-value=1.8e-10 Score=116.22 Aligned_cols=128 Identities=15% Similarity=0.116 Sum_probs=78.0
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccccc-C
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKEL-P 148 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~-~ 148 (319)
.+-+|+.|||+|||......+.. + . .++|+++|+.+|+.|..+.+.+...... ..++. ...+... .
T Consensus 274 r~GIIvLPtGaGKTlvai~aa~~-l--~-----k~tLILvps~~Lv~QW~~ef~~~~~l~~----~~I~~-~tg~~k~~~ 340 (732)
T TIGR00603 274 RSGIIVLPCGAGKSLVGVTAACT-V--K-----KSCLVLCTSAVSVEQWKQQFKMWSTIDD----SQICR-FTSDAKERF 340 (732)
T ss_pred CCcEEEeCCCCChHHHHHHHHHH-h--C-----CCEEEEeCcHHHHHHHHHHHHHhcCCCC----ceEEE-EecCccccc
Confidence 46789999999999887654432 2 1 1456666999999999998887654321 12221 1111111 1
Q ss_pred CCCceEEEECchHHHHHHhcC-------CCC--CCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 149 RKRGSILYCTAGILPEVMQSD-------PIL--SGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 149 ~~~~~Iiv~Tpg~ll~~l~~~-------~~l--~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
.....|+|+|+..+....... ..+ ..++++|+||+|. +-.......+..+ .....++||||+
T Consensus 341 ~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~--lpA~~fr~il~~l----~a~~RLGLTATP 411 (732)
T TIGR00603 341 HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHV--VPAAMFRRVLTIV----QAHCKLGLTATL 411 (732)
T ss_pred ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEcccc--ccHHHHHHHHHhc----CcCcEEEEeecC
Confidence 123569999999775332111 112 4688999999997 3233333333322 233579999999
No 104
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.24 E-value=2.2e-11 Score=123.98 Aligned_cols=107 Identities=16% Similarity=0.126 Sum_probs=78.5
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccc---
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKE--- 146 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~--- 146 (319)
+--+..++||+|||++|.+|++....... .+.++.|+++||.|.++.+...+... |..+|........
T Consensus 96 ~G~Iaem~TGeGKTL~a~Lpa~~~al~G~-----~V~VvTpn~yLA~qd~e~m~~l~~~l----GLtv~~i~gg~~~~~r 166 (896)
T PRK13104 96 EGNIAEMRTGEGKTLVATLPAYLNAISGR-----GVHIVTVNDYLAKRDSQWMKPIYEFL----GLTVGVIYPDMSHKEK 166 (896)
T ss_pred cCccccccCCCCchHHHHHHHHHHHhcCC-----CEEEEcCCHHHHHHHHHHHHHHhccc----CceEEEEeCCCCHHHH
Confidence 44567788999999999999997665432 35566699999999999888776543 6677654332111
Q ss_pred cCCCCceEEEECchHH-HHHHhcCCC--C-----CCccEEEEecccc
Q psy496 147 LPRKRGSILYCTAGIL-PEVMQSDPI--L-----SGVSHIVMDEIHE 185 (319)
Q Consensus 147 ~~~~~~~Iiv~Tpg~l-l~~l~~~~~--l-----~~v~~vViDEah~ 185 (319)
...-.++|+++|||+| +++++.+.. + ..+.++||||+|.
T Consensus 167 ~~~y~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDs 213 (896)
T PRK13104 167 QEAYKADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDS 213 (896)
T ss_pred HHHhCCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhh
Confidence 1112578999999999 888865532 3 5899999999996
No 105
>KOG0949|consensus
Probab=99.23 E-value=8e-11 Score=118.40 Aligned_cols=179 Identities=17% Similarity=0.149 Sum_probs=118.4
Q ss_pred HHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEE
Q psy496 60 NKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGY 139 (319)
Q Consensus 60 ~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~ 139 (319)
++.+.....|+.++|+|||.+|||.+-...+=..+.... ...|+++.|+++|..|+...+...++......|..+-.
T Consensus 517 ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKVLResD---~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~rg~sl~g 593 (1330)
T KOG0949|consen 517 RELLDSVDRNESAVIVAPTSAGKTFISFYAIEKVLRESD---SDVVIYVAPTKALVNQVSANVYARFDTKTFLRGVSLLG 593 (1330)
T ss_pred HHHhhhhhcccceEEEeeccCCceeccHHHHHHHHhhcC---CCEEEEecchHHHhhhhhHHHHHhhccCccccchhhHh
Confidence 466777788899999999999999776555433333333 34799999999999999887777664332211222211
Q ss_pred EEecccccCCCCceEEEECchHHHHHHhcCC----CCCCccEEEEecccccccchh-HHHHHHHhhhccccCceEEEecc
Q psy496 140 QIRLEKELPRKRGSILYCTAGILPEVMQSDP----ILSGVSHIVMDEIHERSMISD-FLLAILKDVTDKRKDLKLILMSA 214 (319)
Q Consensus 140 ~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~----~l~~v~~vViDEah~~~~~~~-~~~~~l~~~~~~~~~~qiv~lSA 214 (319)
....+-...+-+|+|+|+-|+.+-..+.+.| ....++++|+||+|..|-..+ .+...+-.+. ..-++++||
T Consensus 594 ~ltqEYsinp~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~li----~CP~L~LSA 669 (1330)
T KOG0949|consen 594 DLTQEYSINPWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLLLI----PCPFLVLSA 669 (1330)
T ss_pred hhhHHhcCCchhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHHhc----CCCeeEEec
Confidence 2222222223478999999999988886643 378899999999998654433 3333322222 225899999
Q ss_pred cc-ChhhHhhhhC--------CCCEEEeCCccccceeeee
Q psy496 215 TL-NAEKFSQFFG--------GAPILHIPGFTYPVQEYYL 245 (319)
Q Consensus 215 T~-~~~~l~~~l~--------~~~~i~~~~r~~~v~~~~~ 245 (319)
|+ |+..+.+|+. ++..+....|...+..++.
T Consensus 670 TigN~~l~qkWlnq~~R~~sr~~eli~~~erySel~l~v~ 709 (1330)
T KOG0949|consen 670 TIGNPNLFQKWLNQRGRAMSRNAELIDYGERYSELGLVVY 709 (1330)
T ss_pred ccCCHHHHHHHHHHHHhhcCCCeeeeehhhhhhhhcceee
Confidence 99 9999999996 2334555555544444433
No 106
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.21 E-value=3.2e-10 Score=117.25 Aligned_cols=183 Identities=15% Similarity=0.149 Sum_probs=125.6
Q ss_pred ccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHH
Q psy496 42 ECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAER 121 (319)
Q Consensus 42 ~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~ 121 (319)
+...|+-|..||..+.. |.-.. ..=+=+|||.-|=|||++++-+.+.+...+. .|.+++||..||+|.++.
T Consensus 592 PyeET~DQl~AI~eVk~--DM~~~--kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GK-----QVAvLVPTTlLA~QHy~t 662 (1139)
T COG1197 592 PYEETPDQLKAIEEVKR--DMESG--KPMDRLICGDVGFGKTEVAMRAAFKAVMDGK-----QVAVLVPTTLLAQQHYET 662 (1139)
T ss_pred CCcCCHHHHHHHHHHHH--HhccC--CcchheeecCcCCcHHHHHHHHHHHHhcCCC-----eEEEEcccHHhHHHHHHH
Confidence 44567889999988765 43222 2234689999999999999999888765543 455555999999999999
Q ss_pred HHHHhccccCCCCceEEEEEeccccc---------CCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhH
Q psy496 122 VAQERDEQCGRPGSSVGYQIRLEKEL---------PRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDF 192 (319)
Q Consensus 122 ~~~~~~~~~~~~g~~vg~~~~~~~~~---------~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~ 192 (319)
+.+.|... ...++.-.++.... ...+.+|+|+|.- ++..+..+++++++||||-|++|+.-
T Consensus 663 FkeRF~~f----PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr----LL~kdv~FkdLGLlIIDEEqRFGVk~-- 732 (1139)
T COG1197 663 FKERFAGF----PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR----LLSKDVKFKDLGLLIIDEEQRFGVKH-- 732 (1139)
T ss_pred HHHHhcCC----CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH----hhCCCcEEecCCeEEEechhhcCccH--
Confidence 99988755 33444333322211 1135689999975 55666779999999999999977643
Q ss_pred HHHHHHhhhccccCceEEEeccccChhhHhhhhCC---CCEEE-eCCccccceeeeehh
Q psy496 193 LLAILKDVTDKRKDLKLILMSATLNAEKFSQFFGG---APILH-IPGFTYPVQEYYLED 247 (319)
Q Consensus 193 ~~~~l~~~~~~~~~~qiv~lSAT~~~~~l~~~l~~---~~~i~-~~~r~~~v~~~~~~~ 247 (319)
-..++ .+..+.-++-||||+=+..+.--+.+ -.++. .+....||++++.+.
T Consensus 733 -KEkLK---~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R~pV~T~V~~~ 787 (1139)
T COG1197 733 -KEKLK---ELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDRLPVKTFVSEY 787 (1139)
T ss_pred -HHHHH---HHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCCcceEEEEecC
Confidence 22333 34457789999999955555543322 22332 344558999888765
No 107
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.17 E-value=1.5e-10 Score=122.57 Aligned_cols=167 Identities=19% Similarity=0.224 Sum_probs=99.0
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
..+.|.+||..+... +. ...+..+|+.+||||||..+.. ++..+..... ..+||+++|+++|+.|..+.+..
T Consensus 414 lR~YQ~~AI~ai~~a---~~--~g~r~~Ll~maTGSGKT~tai~-li~~L~~~~~--~~rVLfLvDR~~L~~Qa~~~F~~ 485 (1123)
T PRK11448 414 LRYYQEDAIQAVEKA---IV--EGQREILLAMATGTGKTRTAIA-LMYRLLKAKR--FRRILFLVDRSALGEQAEDAFKD 485 (1123)
T ss_pred CCHHHHHHHHHHHHH---HH--hccCCeEEEeCCCCCHHHHHHH-HHHHHHhcCc--cCeEEEEecHHHHHHHHHHHHHh
Confidence 357788888776542 11 2346799999999999977543 3344443322 24788888999999999988876
Q ss_pred HhccccCCCCceEE--EEEe-cccccCCCCceEEEECchHHHHHHhc------CCCCCCccEEEEecccccccchh----
Q psy496 125 ERDEQCGRPGSSVG--YQIR-LEKELPRKRGSILYCTAGILPEVMQS------DPILSGVSHIVMDEIHERSMISD---- 191 (319)
Q Consensus 125 ~~~~~~~~~g~~vg--~~~~-~~~~~~~~~~~Iiv~Tpg~ll~~l~~------~~~l~~v~~vViDEah~~~~~~~---- 191 (319)
..... +.... +.+. ..+.......+|+|+|...+.+.+.. ...+..+++||+||||+ +...+
T Consensus 486 ~~~~~----~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHR-s~~~d~~~~ 560 (1123)
T PRK11448 486 TKIEG----DQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHR-GYTLDKEMS 560 (1123)
T ss_pred ccccc----ccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCC-CCccccccc
Confidence 42111 10000 0111 11111223467999999998776521 13467899999999996 32100
Q ss_pred ----------HHHHHHHhhhccccCceEEEeccccChhhHhhhhC
Q psy496 192 ----------FLLAILKDVTDKRKDLKLILMSATLNAEKFSQFFG 226 (319)
Q Consensus 192 ----------~~~~~l~~~~~~~~~~qiv~lSAT~~~~~l~~~l~ 226 (319)
-.....+.+.... +...|+||||+.. ...++|+
T Consensus 561 ~~~~~~~~~~~~~~~yr~iL~yF-dA~~IGLTATP~r-~t~~~FG 603 (1123)
T PRK11448 561 EGELQFRDQLDYVSKYRRVLDYF-DAVKIGLTATPAL-HTTEIFG 603 (1123)
T ss_pred cchhccchhhhHHHHHHHHHhhc-CccEEEEecCCcc-chhHHhC
Confidence 0012233333322 3468999999932 2345565
No 108
>KOG0952|consensus
Probab=99.17 E-value=1.5e-11 Score=124.42 Aligned_cols=209 Identities=13% Similarity=0.116 Sum_probs=142.0
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccC
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELP 148 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~ 148 (319)
+.++++-+|||||||.++.+.++......+ ..+++++.|.++|.....+.+.+..... |..++- ...+...+
T Consensus 943 d~~~~~g~ptgsgkt~~ae~a~~~~~~~~p---~~kvvyIap~kalvker~~Dw~~r~~~~----g~k~ie-~tgd~~pd 1014 (1230)
T KOG0952|consen 943 DLNFLLGAPTGSGKTVVAELAIFRALSYYP---GSKVVYIAPDKALVKERSDDWSKRDELP----GIKVIE-LTGDVTPD 1014 (1230)
T ss_pred chhhhhcCCccCcchhHHHHHHHHHhccCC---CccEEEEcCCchhhcccccchhhhcccC----CceeEe-ccCccCCC
Confidence 356888999999999999999987765443 4699999999999998888887765432 333321 11111111
Q ss_pred ---CCCceEEEECchHHH---HHHhcCCCCCCccEEEEecccc----cccchhHHHHHHHhhh-ccccCceEEEecccc-
Q psy496 149 ---RKRGSILYCTAGILP---EVMQSDPILSGVSHIVMDEIHE----RSMISDFLLAILKDVT-DKRKDLKLILMSATL- 216 (319)
Q Consensus 149 ---~~~~~Iiv~Tpg~ll---~~l~~~~~l~~v~~vViDEah~----~~~~~~~~~~~l~~~~-~~~~~~qiv~lSAT~- 216 (319)
-..++++++||+... +-|.....+++++.+|+||.|. |++-.+....+...+. ...+.+|++++|--+
T Consensus 1015 ~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~~ 1094 (1230)
T KOG0952|consen 1015 VKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGEDRGPVLEVIVSRMNYISSQTEEPVRYLGLSTALA 1094 (1230)
T ss_pred hhheecCceEEcccccccCccccccchhhhccccceeecccccccCCCcceEEEEeeccccCccccCcchhhhhHhhhhh
Confidence 135679999997664 4455666799999999999997 4444444444444322 244567899988777
Q ss_pred ChhhHhhhhCCCCE--EEeCCccccceeeeehhhhhhhhhhHH-HHHHHHhhhhhhhccccCCCcEEEeCCcccc
Q psy496 217 NAEKFSQFFGGAPI--LHIPGFTYPVQEYYLEDVLNMTRKDLK-LILMSATLNAEKFSQFFGGAPILHIPGFTYP 288 (319)
Q Consensus 217 ~~~~l~~~l~~~~~--i~~~~r~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~ 288 (319)
|..++++|++-.+. +....|+.|.+.++..++.. ...-+ ..+++..+.+++ ..++..++|||+.+|+-.
T Consensus 1095 na~dla~wl~~~~~~nf~~svrpvp~~~~i~gfp~~--~~cprm~smnkpa~qaik-~~sp~~p~lifv~srrqt 1166 (1230)
T KOG0952|consen 1095 NANDLADWLNIKDMYNFRPSVRPVPLEVHIDGFPGQ--HYCPRMMSMNKPAFQAIK-THSPIKPVLIFVSSRRQT 1166 (1230)
T ss_pred ccHHHHHHhCCCCcCCCCcccccCCceEeecCCCch--hcchhhhhcccHHHHHHh-cCCCCCceEEEeeccccc
Confidence 99999999986665 44456777888887776632 22222 233344555544 345688999999998764
No 109
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.10 E-value=1e-09 Score=112.74 Aligned_cols=165 Identities=18% Similarity=0.096 Sum_probs=95.9
Q ss_pred HhhhcCCCCC-cEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEE
Q psy496 61 KCLTLSPILS-PSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGY 139 (319)
Q Consensus 61 ~~l~~~~~~~-~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~ 139 (319)
+........+ .+++.||||+|||++.+.+.+...... .....+++++.|+|.+..++++++....+..........+.
T Consensus 205 ~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~-~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~~~~~~~h~~ 283 (733)
T COG1203 205 ELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEK-IKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFSVIGKSLHSS 283 (733)
T ss_pred HHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhcc-ccccceEEEEccHHHHHHHHHHHHHhhhccccccccccccc
Confidence 3333444445 899999999999999999988776553 12456999999999999999999987655332111100110
Q ss_pred EEe---------------cccccCCCCceEEEECchHHHHHHhcCCCC-----CCccEEEEecccccccc--hhHHHHHH
Q psy496 140 QIR---------------LEKELPRKRGSILYCTAGILPEVMQSDPIL-----SGVSHIVMDEIHERSMI--SDFLLAIL 197 (319)
Q Consensus 140 ~~~---------------~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l-----~~v~~vViDEah~~~~~--~~~~~~~l 197 (319)
... ..+.....-..+.++||-............ -..+.+|+||+|..... ..+++..+
T Consensus 284 ~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~~~~~~l~~~i 363 (733)
T COG1203 284 SKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADETMLAALLALL 363 (733)
T ss_pred ccchhhhccccccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhcccchHHHHHHHH
Confidence 000 000000001124444443333322111111 23578999999984433 33555555
Q ss_pred HhhhccccCceEEEeccccCh---hhHhhhhCCC
Q psy496 198 KDVTDKRKDLKLILMSATLNA---EKFSQFFGGA 228 (319)
Q Consensus 198 ~~~~~~~~~~qiv~lSAT~~~---~~l~~~l~~~ 228 (319)
..+... +..+|+||||++. +.+.+.++..
T Consensus 364 ~~l~~~--g~~ill~SATlP~~~~~~l~~~~~~~ 395 (733)
T COG1203 364 EALAEA--GVPVLLMSATLPPFLKEKLKKALGKG 395 (733)
T ss_pred HHHHhC--CCCEEEEecCCCHHHHHHHHHHHhcc
Confidence 555544 4579999999943 3455555543
No 110
>KOG0349|consensus
Probab=99.09 E-value=6.9e-11 Score=109.90 Aligned_cols=120 Identities=18% Similarity=0.164 Sum_probs=73.2
Q ss_pred EEEEecccHHHHHHHHHHHHHHhcccc---CCCCceEE-EEEecccccCCCCceEEEECchHHHHHHhcC-CCCCCccEE
Q psy496 104 CIMVTQPRRISAIAIAERVAQERDEQC---GRPGSSVG-YQIRLEKELPRKRGSILYCTAGILPEVMQSD-PILSGVSHI 178 (319)
Q Consensus 104 ~vl~~~Ptr~la~q~~~~~~~~~~~~~---~~~g~~vg-~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~-~~l~~v~~v 178 (319)
..+++.|.||||.|..+.+.++..... ..--..+| ...+..-....+..+|+|+||||+++.+... ..+++++++
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~lt~crFl 367 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTLTHCRFL 367 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhccceeeeeeEEE
Confidence 567778999999999986655421110 00001122 1122222233456899999999999999554 458999999
Q ss_pred EEeccccc-c-cchhHHHHHH---HhhhccccCceEEEecccc---ChhhHhh
Q psy496 179 VMDEIHER-S-MISDFLLAIL---KDVTDKRKDLKLILMSATL---NAEKFSQ 223 (319)
Q Consensus 179 ViDEah~~-~-~~~~~~~~~l---~~~~~~~~~~qiv~lSAT~---~~~~l~~ 223 (319)
|+||+|.. + ...|.....- ..+..-...+|.+++|||+ ++..+++
T Consensus 368 vlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~e 420 (725)
T KOG0349|consen 368 VLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGE 420 (725)
T ss_pred EecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhh
Confidence 99999961 1 1222222222 2222223457899999999 5666664
No 111
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.06 E-value=9.1e-10 Score=111.95 Aligned_cols=135 Identities=16% Similarity=0.188 Sum_probs=81.0
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEe-ccccc
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIR-LEKEL 147 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~-~~~~~ 147 (319)
.+..+|+.+||||||......+.. +.... ...+|+++.|+++|..|..+.+........ ...+ ... .....
T Consensus 263 ~~~gli~~~TGsGKT~t~~~la~~-l~~~~--~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~~----~~~~-s~~~L~~~l 334 (667)
T TIGR00348 263 ERGGLIWHTQGSGKTLTMLFAARK-ALELL--KNPKVFFVVDRRELDYQLMKEFQSLQKDCA----ERIE-SIAELKRLL 334 (667)
T ss_pred CceeEEEEecCCCccHHHHHHHHH-HHhhc--CCCeEEEEECcHHHHHHHHHHHHhhCCCCC----cccC-CHHHHHHHH
Confidence 457999999999999877655433 33222 235788888999999999998877642111 0000 000 11111
Q ss_pred CCCCceEEEECchHHHHHHhcC---CCCCCc-cEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 148 PRKRGSILYCTAGILPEVMQSD---PILSGV-SHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 148 ~~~~~~Iiv~Tpg~ll~~l~~~---~~l~~v-~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
......|+|+|.+.+.+.+... .....- -+||+||||+ +. .+.+...++ ...|+...++||||+
T Consensus 335 ~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHr-s~-~~~~~~~l~---~~~p~a~~lGfTaTP 402 (667)
T TIGR00348 335 EKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHR-SQ-YGELAKNLK---KALKNASFFGFTGTP 402 (667)
T ss_pred hCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCcc-cc-chHHHHHHH---hhCCCCcEEEEeCCC
Confidence 1123569999999987644221 111111 2899999996 22 222222232 223466899999999
No 112
>KOG0352|consensus
Probab=99.00 E-value=1.5e-09 Score=101.02 Aligned_cols=221 Identities=17% Similarity=0.101 Sum_probs=117.6
Q ss_pred cccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHh
Q psy496 47 VTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQER 126 (319)
Q Consensus 47 ~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~ 126 (319)
+.|++|+.++ ...+++|.++-|||+||+++|.+|.|-+ .+ .-++++|.-+|..+...-+..+
T Consensus 23 ~LQE~A~~c~---------VK~k~DVyVsMPTGaGKSLCyQLPaL~~---~g-----ITIV~SPLiALIkDQiDHL~~L- 84 (641)
T KOG0352|consen 23 RLQEQAINCI---------VKRKCDVYVSMPTGAGKSLCYQLPALVH---GG-----ITIVISPLIALIKDQIDHLKRL- 84 (641)
T ss_pred hHHHHHHHHH---------HhccCcEEEeccCCCchhhhhhchHHHh---CC-----eEEEehHHHHHHHHHHHHHHhc-
Confidence 6677777654 3466889999999999999999997643 22 5667789999988766545443
Q ss_pred ccccCCCCceEEEEEe----cccccCCCCceEEEECchHHH-----HHHhcCCCCCCccEEEEecccc-----cccchh-
Q psy496 127 DEQCGRPGSSVGYQIR----LEKELPRKRGSILYCTAGILP-----EVMQSDPILSGVSHIVMDEIHE-----RSMISD- 191 (319)
Q Consensus 127 ~~~~~~~g~~vg~~~~----~~~~~~~~~~~Iiv~Tpg~ll-----~~l~~~~~l~~v~~vViDEah~-----~~~~~~- 191 (319)
...+...........+ .+-.......+|++-||+..- .++.+-..-.-++++|+||||. ++...|
T Consensus 85 KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDY 164 (641)
T KOG0352|consen 85 KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDY 164 (641)
T ss_pred CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcch
Confidence 1111000111111111 111111124579999996541 2222111124578999999996 222223
Q ss_pred HHHHHHHhhhccccCceEEEeccccChh---hHhhhhC-CCCE--EEeCC-cc-ccceeeeehhhhhhhhhhHHHHHHHH
Q psy496 192 FLLAILKDVTDKRKDLKLILMSATLNAE---KFSQFFG-GAPI--LHIPG-FT-YPVQEYYLEDVLNMTRKDLKLILMSA 263 (319)
Q Consensus 192 ~~~~~l~~~~~~~~~~qiv~lSAT~~~~---~l~~~l~-~~~~--i~~~~-r~-~~v~~~~~~~~~~~~~~~~~~~~~~~ 263 (319)
+-++.++ ..-++.-.|.++||.+++ ++..-+. ..|+ |..+. |. .-.+++|-..+ ...-..++....+.
T Consensus 165 L~LG~LR---S~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I-~D~~~~LaDF~~~~ 240 (641)
T KOG0352|consen 165 LTLGSLR---SVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFRDNLFYDNHMKSFI-TDCLTVLADFSSSN 240 (641)
T ss_pred hhhhhHH---hhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchhhhhhHHHHHHHHh-hhHhHhHHHHHHHh
Confidence 2222222 233466789999999654 3333221 2222 22111 10 00122222221 22223455555555
Q ss_pred hhhhhhhc---cccCCCcEEEeCCccccc
Q psy496 264 TLNAEKFS---QFFGGAPILHIPGFTYPV 289 (319)
Q Consensus 264 ~~~~~~~~---~~~~g~~LVFlp~R~~~v 289 (319)
.-+.+.+. +.+.|..||+|.||..+-
T Consensus 241 LG~~~~~~~~~K~~~GCGIVYCRTR~~cE 269 (641)
T KOG0352|consen 241 LGKHEKASQNKKTFTGCGIVYCRTRNECE 269 (641)
T ss_pred cCChhhhhcCCCCcCcceEEEeccHHHHH
Confidence 55444333 234789999999998773
No 113
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=98.92 E-value=2.5e-09 Score=105.14 Aligned_cols=154 Identities=18% Similarity=0.123 Sum_probs=92.4
Q ss_pred cccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHh
Q psy496 47 VTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQER 126 (319)
Q Consensus 47 ~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~ 126 (319)
+-|.++|..+++|++ +++.-|||.||+++|.+|.+-. . +..|+++|.-+|-.+..+.+...
T Consensus 20 ~gQ~evI~~~l~g~d----------~lvvmPTGgGKSlCyQiPAll~---~-----G~TLVVSPLiSLM~DQV~~l~~~- 80 (590)
T COG0514 20 PGQQEIIDALLSGKD----------TLVVMPTGGGKSLCYQIPALLL---E-----GLTLVVSPLISLMKDQVDQLEAA- 80 (590)
T ss_pred CCHHHHHHHHHcCCc----------EEEEccCCCCcchHhhhHHHhc---C-----CCEEEECchHHHHHHHHHHHHHc-
Confidence 558888877776655 5555569999999999997532 2 27888889999977766656543
Q ss_pred ccccCCCCceEEEEEec---------ccccCCCCceEEEECchHHHHHH-hcCCCCCCccEEEEecccccccch-hH--H
Q psy496 127 DEQCGRPGSSVGYQIRL---------EKELPRKRGSILYCTAGILPEVM-QSDPILSGVSHIVMDEIHERSMIS-DF--L 193 (319)
Q Consensus 127 ~~~~~~~g~~vg~~~~~---------~~~~~~~~~~Iiv~Tpg~ll~~l-~~~~~l~~v~~vViDEah~~~~~~-~~--~ 193 (319)
|....+.... .........++++-+|+++..-. .....-..+.++||||||..+--. || -
T Consensus 81 -------Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~ 153 (590)
T COG0514 81 -------GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPD 153 (590)
T ss_pred -------CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHh
Confidence 3222211110 01111123579999999884322 111113578999999999722111 11 1
Q ss_pred HHHHHhhhccccCceEEEeccccChh---hHhhhhC
Q psy496 194 LAILKDVTDKRKDLKLILMSATLNAE---KFSQFFG 226 (319)
Q Consensus 194 ~~~l~~~~~~~~~~qiv~lSAT~~~~---~l~~~l~ 226 (319)
...+..+...-+++.++.++||.+.. ++.+-|+
T Consensus 154 Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~ 189 (590)
T COG0514 154 YRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLG 189 (590)
T ss_pred HHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhc
Confidence 12233333333477899999999544 5555554
No 114
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=98.91 E-value=1.9e-09 Score=109.86 Aligned_cols=103 Identities=18% Similarity=0.143 Sum_probs=73.0
Q ss_pred EEecCCCCCccchhhHHHH-HHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccc---cC
Q psy496 73 IIYTSTGCGKTTQVPQFIL-DDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKE---LP 148 (319)
Q Consensus 73 li~apTGSGKT~~~~l~il-~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~---~~ 148 (319)
+..+.||+|||+++.+|++ +.+ .+. ++.|+ .|++.||.|.++.+...+... |..+|......+. ..
T Consensus 98 Iaem~TGeGKTLva~lpa~l~aL-~G~---~V~Iv--Tpn~yLA~rd~e~~~~l~~~L----Glsv~~i~~~~~~~er~~ 167 (830)
T PRK12904 98 IAEMKTGEGKTLVATLPAYLNAL-TGK---GVHVV--TVNDYLAKRDAEWMGPLYEFL----GLSVGVILSGMSPEERRE 167 (830)
T ss_pred hhhhhcCCCcHHHHHHHHHHHHH-cCC---CEEEE--ecCHHHHHHHHHHHHHHHhhc----CCeEEEEcCCCCHHHHHH
Confidence 4445599999999999996 554 222 34444 499999999999888876543 6667644432111 11
Q ss_pred CCCceEEEECchHH-HHHHhcCC-------CCCCccEEEEecccc
Q psy496 149 RKRGSILYCTAGIL-PEVMQSDP-------ILSGVSHIVMDEIHE 185 (319)
Q Consensus 149 ~~~~~Iiv~Tpg~l-l~~l~~~~-------~l~~v~~vViDEah~ 185 (319)
.-.++|+++||+++ +++++.+. .+..+.++||||||.
T Consensus 168 ~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDs 212 (830)
T PRK12904 168 AYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDS 212 (830)
T ss_pred hcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhh
Confidence 12478999999999 88885433 267899999999996
No 115
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.90 E-value=1e-08 Score=102.49 Aligned_cols=57 Identities=18% Similarity=0.066 Sum_probs=45.9
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQE 125 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~ 125 (319)
..+++.+++.|+||||||.+|++|++..+.... ..+++++.||++|+.|+.+.+...
T Consensus 13 l~~~~~lliEA~TGtGKTlAYLlpal~~~~~~~---~~rvlIstpT~~Lq~Ql~~~l~~l 69 (636)
T TIGR03117 13 LRQKRIGMLEASTGVGKTLAMIMAALTMLKERP---DQKIAIAVPTLALMGQLWSELERL 69 (636)
T ss_pred HhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhcc---CceEEEECCcHHHHHHHHHHHHHH
Confidence 346788999999999999999999987665322 248899999999999998765543
No 116
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.81 E-value=7.1e-09 Score=104.70 Aligned_cols=134 Identities=7% Similarity=0.015 Sum_probs=81.2
Q ss_pred EEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhc-cccCCCCceEEEEEecccc----
Q psy496 72 SIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERD-EQCGRPGSSVGYQIRLEKE---- 146 (319)
Q Consensus 72 vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~-~~~~~~g~~vg~~~~~~~~---- 146 (319)
.+..+.+|||||..|+..+-+.+..++ .+|++.|...|+.|+.+++...++ ..+ ..+.......
T Consensus 163 ~i~~~~~GSGKTevyl~~i~~~l~~Gk-----~vLvLvPEi~lt~q~~~rl~~~f~~~~v------~~lhS~l~~~~R~~ 231 (665)
T PRK14873 163 AVWQALPGEDWARRLAAAAAATLRAGR-----GALVVVPDQRDVDRLEAALRALLGAGDV------AVLSAGLGPADRYR 231 (665)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHcCC-----eEEEEecchhhHHHHHHHHHHHcCCCcE------EEECCCCCHHHHHH
Confidence 344455799999999887766655433 455555999999999999998876 221 1111111111
Q ss_pred ----cCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchh-----HHHHHHHhhhccccCceEEEeccccC
Q psy496 147 ----LPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISD-----FLLAILKDVTDKRKDLKLILMSATLN 217 (319)
Q Consensus 147 ----~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~-----~~~~~l~~~~~~~~~~qiv~lSAT~~ 217 (319)
......+|+|+|-.-++ ..+.++++|||||-|.-+...+ ...+ +........+..+|+.|||..
T Consensus 232 ~w~~~~~G~~~IViGtRSAvF------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRd-vA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 232 RWLAVLRGQARVVVGTRSAVF------APVEDLGLVAIWDDGDDLLAEPRAPYPHARE-VALLRAHQHGCALLIGGHART 304 (665)
T ss_pred HHHHHhCCCCcEEEEcceeEE------eccCCCCEEEEEcCCchhhcCCCCCCccHHH-HHHHHHHHcCCcEEEECCCCC
Confidence 11234679999865322 1368999999999996221111 0010 111111123668999999998
Q ss_pred hhhHhh
Q psy496 218 AEKFSQ 223 (319)
Q Consensus 218 ~~~l~~ 223 (319)
.+.+..
T Consensus 305 les~~~ 310 (665)
T PRK14873 305 AEAQAL 310 (665)
T ss_pred HHHHHH
Confidence 776654
No 117
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=98.80 E-value=1e-08 Score=104.70 Aligned_cols=108 Identities=18% Similarity=0.115 Sum_probs=77.5
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecc---c
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLE---K 145 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~---~ 145 (319)
++--+...+||+|||+++.+|++.....+. . |.++.|++.||.+.++.+...+... |..+|...... .
T Consensus 95 ~~G~IaEm~TGEGKTL~a~lp~~l~al~g~---~--VhIvT~ndyLA~RD~e~m~~l~~~l----Glsv~~i~~~~~~~~ 165 (908)
T PRK13107 95 DSNRIAEMRTGEGKTLTATLPAYLNALTGK---G--VHVITVNDYLARRDAENNRPLFEFL----GLTVGINVAGLGQQE 165 (908)
T ss_pred cCCccccccCCCCchHHHHHHHHHHHhcCC---C--EEEEeCCHHHHHHHHHHHHHHHHhc----CCeEEEecCCCCHHH
Confidence 344566777999999999999986665433 2 5555599999999998887776553 77777543321 1
Q ss_pred ccCCCCceEEEECchHH-HHHHhcCC-------CCCCccEEEEecccc
Q psy496 146 ELPRKRGSILYCTAGIL-PEVMQSDP-------ILSGVSHIVMDEIHE 185 (319)
Q Consensus 146 ~~~~~~~~Iiv~Tpg~l-l~~l~~~~-------~l~~v~~vViDEah~ 185 (319)
....-.++|+++||+.+ ++.++.+- ....+.+.||||+|.
T Consensus 166 r~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDs 213 (908)
T PRK13107 166 KKAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDS 213 (908)
T ss_pred HHhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhh
Confidence 11112578999999999 88775431 137789999999996
No 118
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=98.74 E-value=3.3e-07 Score=93.58 Aligned_cols=111 Identities=19% Similarity=0.190 Sum_probs=72.1
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecc---
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLE--- 144 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~--- 144 (319)
.|+..-|.||||.|||+..++..+ +...++. +++++.||+.|+.|.++++.++..... .....+.|+....
T Consensus 96 rg~SFaiiAPTGvGKTTfg~~~sl---~~a~kgk--r~yii~PT~~Lv~Q~~~kl~~~~e~~~-~~~~~~~yh~~l~~~e 169 (1187)
T COG1110 96 RGKSFAIIAPTGVGKTTFGLLMSL---YLAKKGK--RVYIIVPTTTLVRQVYERLKKFAEDAG-SLDVLVVYHSALPTKE 169 (1187)
T ss_pred cCCceEEEcCCCCchhHHHHHHHH---HHHhcCC--eEEEEecCHHHHHHHHHHHHHHHhhcC-CcceeeeeccccchHH
Confidence 567889999999999987654433 2222232 566666999999999999988754332 0011221221111
Q ss_pred -----cccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccc
Q psy496 145 -----KELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHE 185 (319)
Q Consensus 145 -----~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~ 185 (319)
....+...+|+|+|.+.|......-.. .+++++++|++|.
T Consensus 170 kee~le~i~~gdfdIlitTs~FL~k~~e~L~~-~kFdfifVDDVDA 214 (1187)
T COG1110 170 KEEALERIESGDFDILITTSQFLSKRFEELSK-LKFDFIFVDDVDA 214 (1187)
T ss_pred HHHHHHHHhcCCccEEEEeHHHHHhhHHHhcc-cCCCEEEEccHHH
Confidence 111223568999999999877743222 4789999999995
No 119
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=98.70 E-value=7.6e-08 Score=100.71 Aligned_cols=65 Identities=17% Similarity=0.068 Sum_probs=48.0
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAE 120 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~ 120 (319)
..+.|.+.+..+.. ...+++++++.||||+|||.+|++|++.... .+ .+|+++.||++|..|+..
T Consensus 246 ~r~~Q~~~~~~i~~------~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~-~~----~~vvi~t~t~~Lq~Ql~~ 310 (850)
T TIGR01407 246 YRPEQLKLAELVLD------QLTHSEKSLIEAPTGTGKTLGYLLPALYYAI-TE----KPVVISTNTKVLQSQLLE 310 (850)
T ss_pred cCHHHHHHHHHHHH------HhccCCcEEEECCCCCchhHHHHHHHHHHhc-CC----CeEEEEeCcHHHHHHHHH
Confidence 34566665554433 2335678999999999999999999877544 22 378888899999999854
No 120
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.67 E-value=1e-07 Score=98.99 Aligned_cols=48 Identities=27% Similarity=0.196 Sum_probs=39.7
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIA 119 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~ 119 (319)
..+++.+++.|+||||||.+|++|++... . +.+++++.||++|+.|+.
T Consensus 261 l~~~~~~~~eA~tGtGKT~ayllp~l~~~--~----~~~vvI~t~T~~Lq~Ql~ 308 (820)
T PRK07246 261 FHDGPASFIEAQTGIGKTYGYLLPLLAQS--D----QRQIIVSVPTKILQDQIM 308 (820)
T ss_pred HhCCCcEEEECCCCCcHHHHHHHHHHHhc--C----CCcEEEEeCcHHHHHHHH
Confidence 34678899999999999999999987643 1 247888889999999994
No 121
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.65 E-value=1.4e-07 Score=94.64 Aligned_cols=131 Identities=18% Similarity=0.141 Sum_probs=83.3
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccccc
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKEL 147 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~ 147 (319)
+++.+||+-.||+|||-.+.. ++..++..+. .-+||++.-+++|..|....+...+-. |..+- . ..+..
T Consensus 184 g~~raLlvMATGTGKTrTAia-ii~rL~r~~~--~KRVLFLaDR~~Lv~QA~~af~~~~P~-----~~~~n--~-i~~~~ 252 (875)
T COG4096 184 GQNRALLVMATGTGKTRTAIA-IIDRLIKSGW--VKRVLFLADRNALVDQAYGAFEDFLPF-----GTKMN--K-IEDKK 252 (875)
T ss_pred CCceEEEEEecCCCcceeHHH-HHHHHHhcch--hheeeEEechHHHHHHHHHHHHHhCCC-----cccee--e-eeccc
Confidence 345599999999999977644 4455554332 238999999999999999877766432 11111 1 11111
Q ss_pred CCCCceEEEECchHHHHHHhcC-C-----CCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 148 PRKRGSILYCTAGILPEVMQSD-P-----ILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 148 ~~~~~~Iiv~Tpg~ll~~l~~~-~-----~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
....++|.++|...+...+... . ....+++|||||||+ |...+.. +++..+.. .+++++||+
T Consensus 253 ~~~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR-gi~~~~~-~I~dYFdA-----~~~gLTATP 320 (875)
T COG4096 253 GDTSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR-GIYSEWS-SILDYFDA-----ATQGLTATP 320 (875)
T ss_pred CCcceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh-hHHhhhH-HHHHHHHH-----HHHhhccCc
Confidence 1124679999999998877433 1 245599999999995 5544422 33333322 245569998
No 122
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.59 E-value=4.8e-07 Score=82.69 Aligned_cols=145 Identities=15% Similarity=0.062 Sum_probs=71.8
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHHHhCCC-CccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEIARNRG-SECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK 145 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~-~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~ 145 (319)
......+++-++|+|||......+. .+...... ....+|+++|. .+..+-.+.+.+..... ...+- ......
T Consensus 23 ~~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~----~~~v~-~~~~~~ 95 (299)
T PF00176_consen 23 SPPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPD----SLRVI-IYDGDS 95 (299)
T ss_dssp TTT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT-----TS-EE-EESSSC
T ss_pred cCCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhccccccc----ccccc-cccccc
Confidence 3456789999999999977765543 33332221 11235555698 55566666676665321 01111 111111
Q ss_pred ------ccCCCCceEEEECchHHHHHHhc--CCCC--CCccEEEEeccccc-ccchhHHHHHHHhhhccccCceEEEecc
Q psy496 146 ------ELPRKRGSILYCTAGILPEVMQS--DPIL--SGVSHIVMDEIHER-SMISDFLLAILKDVTDKRKDLKLILMSA 214 (319)
Q Consensus 146 ------~~~~~~~~Iiv~Tpg~ll~~l~~--~~~l--~~v~~vViDEah~~-~~~~~~~~~~l~~~~~~~~~~qiv~lSA 214 (319)
.......+++++|.+.+...... ...+ -+.+.||+||+|.. +...... ..+..+. ...++++||
T Consensus 96 ~~~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~-~~l~~l~----~~~~~lLSg 170 (299)
T PF00176_consen 96 ERRRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSKRY-KALRKLR----ARYRWLLSG 170 (299)
T ss_dssp HHHHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSHHH-HHHHCCC----ECEEEEE-S
T ss_pred ccccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccccccc-ccccccc----cceEEeecc
Confidence 12224567999999998811100 0001 34899999999983 2222222 2222222 346788999
Q ss_pred cc---ChhhHhh
Q psy496 215 TL---NAEKFSQ 223 (319)
Q Consensus 215 T~---~~~~l~~ 223 (319)
|+ +..++..
T Consensus 171 TP~~n~~~dl~~ 182 (299)
T PF00176_consen 171 TPIQNSLEDLYS 182 (299)
T ss_dssp S-SSSGSHHHHH
T ss_pred cccccccccccc
Confidence 98 3444443
No 123
>KOG0351|consensus
Probab=98.58 E-value=6.2e-08 Score=100.50 Aligned_cols=211 Identities=18% Similarity=0.077 Sum_probs=110.9
Q ss_pred cccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHh
Q psy496 47 VTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQER 126 (319)
Q Consensus 47 ~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~ 126 (319)
+-|.++|-+.+.|++ .+|..|||.||+++|.+|.+- ..+ ..++++|...|.......+...
T Consensus 267 ~~Q~eaI~~~l~Gkd----------~fvlmpTG~GKSLCYQlPA~l---~~g-----itvVISPL~SLm~DQv~~L~~~- 327 (941)
T KOG0351|consen 267 PNQLEAINATLSGKD----------CFVLMPTGGGKSLCYQLPALL---LGG-----VTVVISPLISLMQDQVTHLSKK- 327 (941)
T ss_pred hhHHHHHHHHHcCCc----------eEEEeecCCceeeEeeccccc---cCC-----ceEEeccHHHHHHHHHHhhhhc-
Confidence 557777777776666 566666999999999999753 222 6777789999988776655221
Q ss_pred ccccCCCCceEEE-EEe-----cccccCC--CCceEEEECchHHHHHH---hcCCCCCC---ccEEEEecccccc---cc
Q psy496 127 DEQCGRPGSSVGY-QIR-----LEKELPR--KRGSILYCTAGILPEVM---QSDPILSG---VSHIVMDEIHERS---MI 189 (319)
Q Consensus 127 ~~~~~~~g~~vg~-~~~-----~~~~~~~--~~~~Iiv~Tpg~ll~~l---~~~~~l~~---v~~vViDEah~~~---~~ 189 (319)
+.. +...+. +.. ....... ...+|++.||+.+...- .....+.. +..+||||||..+ .+
T Consensus 328 ~I~----a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHd 403 (941)
T KOG0351|consen 328 GIP----ACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHD 403 (941)
T ss_pred Ccc----eeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhccc
Confidence 111 111111 100 0001111 25689999998774332 11122344 8999999999711 11
Q ss_pred hhHHHHHHHhhhccccCceEEEeccccC---hhhHhhhhC--CCCEEEeCCccccceeeeehhhhhhhhhhHHHHHHHHh
Q psy496 190 SDFLLAILKDVTDKRKDLKLILMSATLN---AEKFSQFFG--GAPILHIPGFTYPVQEYYLEDVLNMTRKDLKLILMSAT 264 (319)
Q Consensus 190 ~~~~~~~l~~~~~~~~~~qiv~lSAT~~---~~~l~~~l~--~~~~i~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 264 (319)
..-....+..+....+..-++.++||.. .+++.+-++ ++.++.. .-..+ -.+| ... .... +..+....
T Consensus 404 FRp~Yk~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~-sfnR~-NL~y-eV~-~k~~---~~~~~~~~ 476 (941)
T KOG0351|consen 404 FRPSYKRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS-SFNRP-NLKY-EVS-PKTD---KDALLDIL 476 (941)
T ss_pred ccHHHHHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc-cCCCC-CceE-EEE-eccC---ccchHHHH
Confidence 1111112222222334467999999983 346666654 3332221 11111 1111 110 1111 11111112
Q ss_pred hhhhhhccccCCCcEEEeCCccccc
Q psy496 265 LNAEKFSQFFGGAPILHIPGFTYPV 289 (319)
Q Consensus 265 ~~~~~~~~~~~g~~LVFlp~R~~~v 289 (319)
... ....+.++.||+|.+|..|-
T Consensus 477 ~~~--~~~~~~~s~IIYC~sr~~ce 499 (941)
T KOG0351|consen 477 EES--KLRHPDQSGIIYCLSRKECE 499 (941)
T ss_pred HHh--hhcCCCCCeEEEeCCcchHH
Confidence 222 12234788999999999883
No 124
>KOG0353|consensus
Probab=98.41 E-value=5.3e-07 Score=83.12 Aligned_cols=149 Identities=21% Similarity=0.129 Sum_probs=87.5
Q ss_pred ccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHH
Q psy496 46 MVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQE 125 (319)
Q Consensus 46 ~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~ 125 (319)
.|.|..+|.+...|++ +++.-|||-||+++|.+|.+- ..+ ..++++|.-.|.....-.+..+
T Consensus 96 rplq~~ain~~ma~ed----------~~lil~tgggkslcyqlpal~---adg-----~alvi~plislmedqil~lkql 157 (695)
T KOG0353|consen 96 RPLQLAAINATMAGED----------AFLILPTGGGKSLCYQLPALC---ADG-----FALVICPLISLMEDQILQLKQL 157 (695)
T ss_pred ChhHHHHhhhhhccCc----------eEEEEeCCCccchhhhhhHHh---cCC-----ceEeechhHHHHHHHHHHHHHh
Confidence 3779999888877766 455566999999999999763 333 4555569999887666555544
Q ss_pred hcccc--CCCCceEEEEEecccccCC--CCceEEEECchHH------HHHHhcCCCCCCccEEEEecccc-----cccch
Q psy496 126 RDEQC--GRPGSSVGYQIRLEKELPR--KRGSILYCTAGIL------PEVMQSDPILSGVSHIVMDEIHE-----RSMIS 190 (319)
Q Consensus 126 ~~~~~--~~~g~~vg~~~~~~~~~~~--~~~~Iiv~Tpg~l------l~~l~~~~~l~~v~~vViDEah~-----~~~~~ 190 (319)
+... ..........-+.+....+ ..-++++.||+.+ ++.+.......-+..+-+||+|. ++...
T Consensus 158 -gi~as~lnansske~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~ 236 (695)
T KOG0353|consen 158 -GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRP 236 (695)
T ss_pred -CcchhhccCcccHHHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCc
Confidence 1110 0000000000111111111 2346999999876 33332222345688999999996 22233
Q ss_pred h-HHHHHHHhhhccccCceEEEecccc
Q psy496 191 D-FLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 191 ~-~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
| ..+.++++ ..++.-+++++||.
T Consensus 237 dy~~l~ilkr---qf~~~~iigltata 260 (695)
T KOG0353|consen 237 DYKALGILKR---QFKGAPIIGLTATA 260 (695)
T ss_pred chHHHHHHHH---hCCCCceeeeehhh
Confidence 3 33444443 23466799999998
No 125
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.39 E-value=3e-06 Score=85.71 Aligned_cols=151 Identities=19% Similarity=0.214 Sum_probs=87.4
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK 145 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~ 145 (319)
.......+|.||.|||||++...++-+.+.. +..+++++.-++.|+.+++.++....-. |. +-|....+.
T Consensus 46 ~~~~~V~vVRSpMGTGKTtaLi~wLk~~l~~----~~~~VLvVShRrSL~~sL~~rf~~~~l~-----gF-v~Y~d~~~~ 115 (824)
T PF02399_consen 46 PQKRGVLVVRSPMGTGKTTALIRWLKDALKN----PDKSVLVVSHRRSLTKSLAERFKKAGLS-----GF-VNYLDSDDY 115 (824)
T ss_pred CCCCCeEEEECCCCCCcHHHHHHHHHHhccC----CCCeEEEEEhHHHHHHHHHHHHhhcCCC-----cc-eeeeccccc
Confidence 4566778999999999999987776544322 2348899999999999999988753110 11 111111111
Q ss_pred ccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccc-----cccchh---HHHHHHHhhhccccCceEEEeccccC
Q psy496 146 ELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHE-----RSMISD---FLLAILKDVTDKRKDLKLILMSATLN 217 (319)
Q Consensus 146 ~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~-----~~~~~~---~~~~~l~~~~~~~~~~qiv~lSAT~~ 217 (319)
.......+-++..-+.|.+.- ...+.++++|||||+.. .+..+. .....+..+.. ...++|++-|++|
T Consensus 116 ~i~~~~~~rLivqIdSL~R~~--~~~l~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~--~ak~VI~~DA~ln 191 (824)
T PF02399_consen 116 IIDGRPYDRLIVQIDSLHRLD--GSLLDRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIR--NAKTVIVMDADLN 191 (824)
T ss_pred cccccccCeEEEEehhhhhcc--cccccccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHH--hCCeEEEecCCCC
Confidence 111111234555556565443 33578899999999985 111111 12222232222 2458999999994
Q ss_pred h---hhHhhhhCCCCE
Q psy496 218 A---EKFSQFFGGAPI 230 (319)
Q Consensus 218 ~---~~l~~~l~~~~~ 230 (319)
. +-++..-++.++
T Consensus 192 ~~tvdFl~~~Rp~~~i 207 (824)
T PF02399_consen 192 DQTVDFLASCRPDENI 207 (824)
T ss_pred HHHHHHHHHhCCCCcE
Confidence 3 334443344444
No 126
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=98.34 E-value=2.3e-06 Score=89.59 Aligned_cols=142 Identities=12% Similarity=0.155 Sum_probs=78.1
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccC
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELP 148 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~ 148 (319)
...++|.-+.|-|||..+.+.+-.. ...+. ..++|+++|. .|..|-...+.+.++......+.........+....
T Consensus 169 ~~R~LLADEvGLGKTIeAglil~~l-~~~g~--~~rvLIVvP~-sL~~QW~~El~~kF~l~~~i~~~~~~~~~~~~~~~p 244 (956)
T PRK04914 169 APRVLLADEVGLGKTIEAGMIIHQQ-LLTGR--AERVLILVPE-TLQHQWLVEMLRRFNLRFSLFDEERYAEAQHDADNP 244 (956)
T ss_pred CCCEEEEeCCcCcHHHHHHHHHHHH-HHcCC--CCcEEEEcCH-HHHHHHHHHHHHHhCCCeEEEcCcchhhhcccccCc
Confidence 4579999999999998886655443 33332 2367777797 677777777765554321000000000000111112
Q ss_pred CCCceEEEECchHHHHHH--hcCCCCCCccEEEEeccccccc---chhHHHHHHHhhhccccCceEEEecccc
Q psy496 149 RKRGSILYCTAGILPEVM--QSDPILSGVSHIVMDEIHERSM---ISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 149 ~~~~~Iiv~Tpg~ll~~l--~~~~~l~~v~~vViDEah~~~~---~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
....+++|+|.+.+.+.- .....-..++++|+||||.... ........++.+... ...++++|||+
T Consensus 245 f~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v~~La~~--~~~~LLLTATP 315 (956)
T PRK04914 245 FETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVVEQLAEV--IPGVLLLTATP 315 (956)
T ss_pred cccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHHHHHhhc--cCCEEEEEcCc
Confidence 234679999998876421 1111124789999999997211 011112333333322 23578999999
No 127
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.32 E-value=3.7e-06 Score=88.80 Aligned_cols=50 Identities=12% Similarity=-0.022 Sum_probs=40.3
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAE 120 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~ 120 (319)
.+++.++|-||||+|||.+|++|.+......+ .+|++..+|+.|-.|+..
T Consensus 274 ~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~~~----~~vvIsT~T~~LQ~Ql~~ 323 (928)
T PRK08074 274 RDSEHALIEAGTGTGKSLAYLLPAAYFAKKKE----EPVVISTYTIQLQQQLLE 323 (928)
T ss_pred hcCCCEEEECCCCCchhHHHHHHHHHHhhccC----CeEEEEcCCHHHHHHHHH
Confidence 35678999999999999999999875443222 378888999999999754
No 128
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.25 E-value=1.5e-05 Score=75.93 Aligned_cols=130 Identities=18% Similarity=0.153 Sum_probs=76.2
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHh-CCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccccc
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIAR-NRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKEL 147 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~-~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~ 147 (319)
...+++.||||+|||+............. ..+....++.+-+.|..|....+.+++.++.. +
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp-------v---------- 236 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP-------V---------- 236 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc-------e----------
Confidence 46789999999999988765443222221 23445677777788888877777666654321 1
Q ss_pred CCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhh-hccccC-ceEEEeccccChhhHhhhh
Q psy496 148 PRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDV-TDKRKD-LKLILMSATLNAEKFSQFF 225 (319)
Q Consensus 148 ~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~-~~~~~~-~qiv~lSAT~~~~~l~~~l 225 (319)
..+.++..+...+.. +.++++|+||++.+. ......+..++.+ ....++ -.++.+|||....++.+.+
T Consensus 237 ------~~~~~~~~l~~~L~~---~~~~DlVLIDTaGr~-~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~~~~ 306 (388)
T PRK12723 237 ------KAIESFKDLKEEITQ---SKDFDLVLVDTIGKS-PKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVKEIF 306 (388)
T ss_pred ------EeeCcHHHHHHHHHH---hCCCCEEEEcCCCCC-ccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHHH
Confidence 111133444443322 367899999999962 2221223333333 323323 4678899999655555444
No 129
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=98.23 E-value=2e-06 Score=88.20 Aligned_cols=104 Identities=17% Similarity=0.142 Sum_probs=70.1
Q ss_pred EEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccccc---CC
Q psy496 73 IIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKEL---PR 149 (319)
Q Consensus 73 li~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~---~~ 149 (319)
+.--.||+|||+++.+|++-....+. ++.++. |+.-||.+-++.+...+... |..+|......... ..
T Consensus 99 iaEM~TGEGKTLvA~l~a~l~al~G~---~VhvvT--~ndyLA~RD~e~m~~l~~~l----Gl~v~~i~~~~~~~err~~ 169 (913)
T PRK13103 99 IAEMRTGEGKTLVGTLAVYLNALSGK---GVHVVT--VNDYLARRDANWMRPLYEFL----GLSVGIVTPFQPPEEKRAA 169 (913)
T ss_pred cccccCCCCChHHHHHHHHHHHHcCC---CEEEEe--CCHHHHHHHHHHHHHHhccc----CCEEEEECCCCCHHHHHHH
Confidence 44455999999999999876554433 445555 99999999999888877654 77777443211110 01
Q ss_pred CCceEEEECchHH-HHHHhcCC-------CCCCccEEEEecccc
Q psy496 150 KRGSILYCTAGIL-PEVMQSDP-------ILSGVSHIVMDEIHE 185 (319)
Q Consensus 150 ~~~~Iiv~Tpg~l-l~~l~~~~-------~l~~v~~vViDEah~ 185 (319)
-.++|+++|..-+ .+.|+.+- ...++.+.||||+|.
T Consensus 170 Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDs 213 (913)
T PRK13103 170 YAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDS 213 (913)
T ss_pred hcCCEEEEcccccccchhhccceechhhhcccccceeEechhhh
Confidence 2478999998665 33332221 247899999999997
No 130
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=98.10 E-value=2.6e-06 Score=86.90 Aligned_cols=100 Identities=16% Similarity=0.148 Sum_probs=67.4
Q ss_pred CCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccc---cCCCCce
Q psy496 77 STGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKE---LPRKRGS 153 (319)
Q Consensus 77 pTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~---~~~~~~~ 153 (319)
.||+|||+++.+|++-....+. ++.++. |+.-||.+-++.+...+... |..+|........ ...-.++
T Consensus 101 ~TGEGKTLvA~l~a~l~al~G~---~v~vvT--~neyLA~Rd~e~~~~~~~~L----Gl~vg~i~~~~~~~~r~~~y~~d 171 (796)
T PRK12906 101 KTGEGKTLTATLPVYLNALTGK---GVHVVT--VNEYLSSRDATEMGELYRWL----GLTVGLNLNSMSPDEKRAAYNCD 171 (796)
T ss_pred cCCCCCcHHHHHHHHHHHHcCC---CeEEEe--ccHHHHHhhHHHHHHHHHhc----CCeEEEeCCCCCHHHHHHHhcCC
Confidence 3999999999998876655543 445554 99999999999888877654 7777744321111 1112578
Q ss_pred EEEECchH-----HHHHHhcCC---CCCCccEEEEecccc
Q psy496 154 ILYCTAGI-----LPEVMQSDP---ILSGVSHIVMDEIHE 185 (319)
Q Consensus 154 Iiv~Tpg~-----ll~~l~~~~---~l~~v~~vViDEah~ 185 (319)
|+++|..- |.+.+.... ....+.+.||||+|.
T Consensus 172 I~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDS 211 (796)
T PRK12906 172 ITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDS 211 (796)
T ss_pred CeecCCccccccchhhccccchhhhhccCcceeeeccchh
Confidence 99999843 444432111 245688999999996
No 131
>PF13245 AAA_19: Part of AAA domain
Probab=98.10 E-value=9.3e-06 Score=59.19 Aligned_cols=54 Identities=26% Similarity=0.250 Sum_probs=40.6
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
++..++|.||+|||||......+...+...... ..+|+++.|++.++..+.+++
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 345677799999999987766666555332222 458999999999999998877
No 132
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=98.08 E-value=1.7e-05 Score=68.71 Aligned_cols=126 Identities=20% Similarity=0.229 Sum_probs=74.4
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccCC
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELPR 149 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~~ 149 (319)
+.+++.||||+|||+............ +....++.+-..|.-|.+..+.+++.++..+ - .... ..
T Consensus 2 ~vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~-------~-~~~~---~~- 66 (196)
T PF00448_consen 2 KVIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVEQLKTYAEILGVPF-------Y-VART---ES- 66 (196)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHHHHHHHHHHHTEEE-------E-ESST---TS-
T ss_pred EEEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHHHHHHHHHHhcccc-------c-hhhc---ch-
Confidence 467899999999999887655443332 4456777778899999998888998876432 0 0000 00
Q ss_pred CCceEEEECchHHH-HHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhc-cccCceEEEeccccChhh
Q psy496 150 KRGSILYCTAGILP-EVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTD-KRKDLKLILMSATLNAEK 220 (319)
Q Consensus 150 ~~~~Iiv~Tpg~ll-~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~-~~~~~qiv~lSAT~~~~~ 220 (319)
.|..+. +.+.. ..-+++++|+||-+-+ +.........++.+.. ..+..-.+.+|||...+.
T Consensus 67 --------~~~~~~~~~l~~-~~~~~~D~vlIDT~Gr-~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~ 129 (196)
T PF00448_consen 67 --------DPAEIAREALEK-FRKKGYDLVLIDTAGR-SPRDEELLEELKKLLEALNPDEVHLVLSATMGQED 129 (196)
T ss_dssp --------CHHHHHHHHHHH-HHHTTSSEEEEEE-SS-SSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH
T ss_pred --------hhHHHHHHHHHH-HhhcCCCEEEEecCCc-chhhHHHHHHHHHHhhhcCCccceEEEecccChHH
Confidence 122222 22211 1124689999999985 3333333334443333 345556788999994443
No 133
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.08 E-value=4.3e-05 Score=72.32 Aligned_cols=132 Identities=14% Similarity=0.169 Sum_probs=74.4
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccC
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELP 148 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~ 148 (319)
...+.+.||||+|||+........ +.. .+....++..-|.|..+.+..+.+++..+.. +
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~-L~~--~GkkVglI~aDt~RiaAvEQLk~yae~lgip-------v----------- 299 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQ-FHG--KKKTVGFITTDHSRIGTVQQLQDYVKTIGFE-------V----------- 299 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH-HHH--cCCcEEEEecCCcchHHHHHHHHHhhhcCCc-------E-----------
Confidence 367899999999999887665433 222 2334455555677766655555454432211 1
Q ss_pred CCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEeccccCh---hhHhhhh
Q psy496 149 RKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATLNA---EKFSQFF 225 (319)
Q Consensus 149 ~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~~~---~~l~~~l 225 (319)
+...+|..+.+.+..-..-.++++|+||-+-+..-..+.+..+.+.+....|+..++.+|||... ..+.+-|
T Consensus 300 -----~v~~d~~~L~~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F 374 (436)
T PRK11889 300 -----IAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITNF 374 (436)
T ss_pred -----EecCCHHHHHHHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHHHHHh
Confidence 12235666665553222123689999999975322233344444444334455556779999833 3444445
Q ss_pred C
Q psy496 226 G 226 (319)
Q Consensus 226 ~ 226 (319)
.
T Consensus 375 ~ 375 (436)
T PRK11889 375 K 375 (436)
T ss_pred c
Confidence 4
No 134
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.06 E-value=0.00035 Score=66.03 Aligned_cols=130 Identities=19% Similarity=0.201 Sum_probs=88.9
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccC
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELP 148 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~ 148 (319)
++++.+.||||.|||+........... ..+.....++.+-..|.-|....+.+++.++..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~-~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------ 263 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVM-LKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------ 263 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHh-hccCcceEEEEeccchhhHHHHHHHHHHHhCCce------------------
Confidence 788999999999999887655444331 1233466788888999999988888888876432
Q ss_pred CCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccc-cCceEEEeccccChhhHhhhhC
Q psy496 149 RKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKR-KDLKLILMSATLNAEKFSQFFG 226 (319)
Q Consensus 149 ~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~-~~~qiv~lSAT~~~~~l~~~l~ 226 (319)
.++-+|.-|...+. .+.++++|.+|-+-+ +.........++.+.... +.-..+.+|||...+++.+.+.
T Consensus 264 -----~vv~~~~el~~ai~---~l~~~d~ILVDTaGr-s~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~ 333 (407)
T COG1419 264 -----EVVYSPKELAEAIE---ALRDCDVILVDTAGR-SQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIK 333 (407)
T ss_pred -----EEecCHHHHHHHHH---HhhcCCEEEEeCCCC-CccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHH
Confidence 33445655555542 356789999999985 444445566666665533 3346788999996666665443
No 135
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.02 E-value=2.7e-05 Score=81.05 Aligned_cols=66 Identities=23% Similarity=0.202 Sum_probs=41.0
Q ss_pred ceEEEECchHHHHHHhcCC----CC----CCccEEEEecccccccchhHH-HHHHHhhhccccCceEEEeccccChh
Q psy496 152 GSILYCTAGILPEVMQSDP----IL----SGVSHIVMDEIHERSMISDFL-LAILKDVTDKRKDLKLILMSATLNAE 219 (319)
Q Consensus 152 ~~Iiv~Tpg~ll~~l~~~~----~l----~~v~~vViDEah~~~~~~~~~-~~~l~~~~~~~~~~qiv~lSAT~~~~ 219 (319)
+.++|+|++.++....... .+ -.-+.|||||+|..+..+-.. ...++..... ..++++||||+++.
T Consensus 563 apv~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~~~~~L~rlL~w~~~l--G~~VlLmSATLP~~ 637 (1110)
T TIGR02562 563 APVLVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPEDLPALLRLVQLAGLL--GSRVLLSSATLPPA 637 (1110)
T ss_pred CCeEEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHHHHHHHHHHHHHHHHc--CCCEEEEeCCCCHH
Confidence 4599999998876652211 01 113689999999865554433 3333322223 45799999999554
No 136
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=98.01 E-value=7.8e-06 Score=82.21 Aligned_cols=101 Identities=17% Similarity=0.160 Sum_probs=68.5
Q ss_pred cCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccccc---CCCCc
Q psy496 76 TSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKEL---PRKRG 152 (319)
Q Consensus 76 apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~---~~~~~ 152 (319)
-.||+|||+++.+|++-....+. .|-++.|+.-||.+-++.+...+... |..+|......... ..-.+
T Consensus 98 M~TGEGKTLvA~l~a~l~AL~G~-----~VhvvT~NdyLA~RDae~m~~ly~~L----GLsvg~i~~~~~~~err~aY~~ 168 (764)
T PRK12326 98 MATGEGKTLAGAIAAAGYALQGR-----RVHVITVNDYLARRDAEWMGPLYEAL----GLTVGWITEESTPEERRAAYAC 168 (764)
T ss_pred ccCCCCHHHHHHHHHHHHHHcCC-----CeEEEcCCHHHHHHHHHHHHHHHHhc----CCEEEEECCCCCHHHHHHHHcC
Confidence 33999999999998876554433 34445599999999999888776654 77777543211111 01257
Q ss_pred eEEEECch-----HHHHHHhcCC---CCCCccEEEEecccc
Q psy496 153 SILYCTAG-----ILPEVMQSDP---ILSGVSHIVMDEIHE 185 (319)
Q Consensus 153 ~Iiv~Tpg-----~ll~~l~~~~---~l~~v~~vViDEah~ 185 (319)
+|+++|.. .|.+.+.... ....+.+.||||+|.
T Consensus 169 DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDS 209 (764)
T PRK12326 169 DVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADS 209 (764)
T ss_pred CCEEcCCcccccccchhhhccChHhhcCCccceeeecchhh
Confidence 89999984 4455553222 256688999999996
No 137
>KOG0921|consensus
Probab=97.98 E-value=2.6e-06 Score=85.92 Aligned_cols=182 Identities=5% Similarity=-0.191 Sum_probs=112.4
Q ss_pred chhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccC
Q psy496 52 RISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCG 131 (319)
Q Consensus 52 ~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~ 131 (319)
+.|.-.-.+.+|+..-.|.++.+.+.+|||||.+.++.+++++.......-+-++..+|+++-|........-+.+.-+
T Consensus 404 cgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~i~fctvgv- 482 (1282)
T KOG0921|consen 404 CGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGSIMFCTVGV- 482 (1282)
T ss_pred ccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccceeeeccch-
Confidence 3344344445555556667788888899999999999999988765544445666667777766554433332222111
Q ss_pred CCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEE
Q psy496 132 RPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLIL 211 (319)
Q Consensus 132 ~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~ 211 (319)
+...++....+..-..-..-+..+|.+.++..+..+ +-+....+.||.|++.++++++...++.+ .+..+
T Consensus 483 --llr~~e~glrg~sh~i~deiherdv~~dfll~~lr~--m~~ty~dl~v~lmsatIdTd~f~~~f~~~------p~~~~ 552 (1282)
T KOG0921|consen 483 --LLRMMENGLRGISHVIIDEIHERDVDTDFVLIVLRE--MISTYRDLRVVLMSATIDTDLFTNFFSSI------PDVTV 552 (1282)
T ss_pred --hhhhhhhcccccccccchhhhhhccchHHHHHHHHh--hhccchhhhhhhhhcccchhhhhhhhccc------cceee
Confidence 111221111111100001113355666666555332 23556678899999999999988777754 35689
Q ss_pred eccccChhhHhhhhCCCCEEEeCCccccceeee
Q psy496 212 MSATLNAEKFSQFFGGAPILHIPGFTYPVQEYY 244 (319)
Q Consensus 212 lSAT~~~~~l~~~l~~~~~i~~~~r~~~v~~~~ 244 (319)
+++|+++..+..++-..+...+++++.+++..+
T Consensus 553 ~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~ 585 (1282)
T KOG0921|consen 553 HGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKK 585 (1282)
T ss_pred ccccccHHHHHHHHhhhhhhccCCCcCccchhh
Confidence 999999998887776777777777776665443
No 138
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.91 E-value=0.00015 Score=68.53 Aligned_cols=125 Identities=16% Similarity=0.119 Sum_probs=73.0
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccc
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKE 146 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~ 146 (319)
..++++++.||||+|||+.............+ .....++..-+.|.-+.+..+.+.+.++..+
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~~~~~~G-~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~---------------- 197 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAARCVMRFG-ASKVALLTTDSYRIGGHEQLRIFGKILGVPV---------------- 197 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEecccccccHHHHHHHHHHHcCCce----------------
Confidence 45789999999999999887665544332222 1123344444556667766666766654221
Q ss_pred cCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhc-cccCceEEEeccccChh
Q psy496 147 LPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTD-KRKDLKLILMSATLNAE 219 (319)
Q Consensus 147 ~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~-~~~~~qiv~lSAT~~~~ 219 (319)
..+.+++.+...+. .+.+.++|+||++-. ......+...+..+.. ..+...++++|||...+
T Consensus 198 -------~~~~~~~~l~~~l~---~l~~~DlVLIDTaG~-~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~ 260 (374)
T PRK14722 198 -------HAVKDGGDLQLALA---ELRNKHMVLIDTIGM-SQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGD 260 (374)
T ss_pred -------EecCCcccHHHHHH---HhcCCCEEEEcCCCC-CcccHHHHHHHHHHhccCCCCeEEEEecCccChH
Confidence 11223333433332 235679999999985 2333445555555533 22345688899999443
No 139
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=97.89 E-value=0.00012 Score=76.14 Aligned_cols=137 Identities=15% Similarity=0.157 Sum_probs=76.6
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH-----HHhccccCCCCceEEEEEe-c
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA-----QERDEQCGRPGSSVGYQIR-L 143 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~-----~~~~~~~~~~g~~vg~~~~-~ 143 (319)
-++.+.-+||||||.+++-.+++....-+ ..+.++++|+.+.-..+.+.+. ..+... +.+..+-+.+- .
T Consensus 60 ~n~~~~M~TGtGKT~~~~~~i~~l~~~~~---~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~--y~~~~~~~~~~~S 134 (986)
T PRK15483 60 ANIDIKMETGTGKTYVYTRLMYELHQKYG---LFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQF--YENTRIELYVINA 134 (986)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHcC---CcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHH--cCCceeEEEEEec
Confidence 57999999999999999888766433322 3467777799887776655443 223221 22333332111 1
Q ss_pred cc-----------c---------cCCCCceEEEECchHHHHHHh-----------cC-CC---CCC-ccEEEEecccccc
Q psy496 144 EK-----------E---------LPRKRGSILYCTAGILPEVMQ-----------SD-PI---LSG-VSHIVMDEIHERS 187 (319)
Q Consensus 144 ~~-----------~---------~~~~~~~Iiv~Tpg~ll~~l~-----------~~-~~---l~~-v~~vViDEah~~~ 187 (319)
.+ . ......+|+++|-+.+..... +. .. +.. =-.||+||.|...
T Consensus 135 ~k~~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~ 214 (986)
T PRK15483 135 GDKKKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFP 214 (986)
T ss_pred CcccccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCC
Confidence 11 0 001135799999987754211 11 11 111 1478999999832
Q ss_pred cchhHHHHHHHhhhccccCceEEEecccc
Q psy496 188 MISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
-.... .+.+..+.|.. ++.+|||.
T Consensus 215 ~~~k~----~~~i~~lnpl~-~lrysAT~ 238 (986)
T PRK15483 215 RDNKF----YQAIEALKPQM-IIRFGATF 238 (986)
T ss_pred cchHH----HHHHHhcCccc-EEEEeeec
Confidence 21111 23344454433 56699999
No 140
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.87 E-value=3e-05 Score=61.93 Aligned_cols=115 Identities=17% Similarity=0.223 Sum_probs=54.8
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHh-CCCCccEEEEe-cccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIAR-NRGSECCIMVT-QPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK 145 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~-~~~~~~~vl~~-~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~ 145 (319)
+++.++|.||+|+|||.......-...... ... ...++.+ .|...-...+.+.+...++... ..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~---~~---------- 68 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKN-HPDVIYVNCPSSRTPRDFAQEILEALGLPL---KS---------- 68 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCC-CEEEEEEEHHHHSSHHHHHHHHHHHHT-SS---SS----------
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccC-CCcEEEEEeCCCCCHHHHHHHHHHHhCccc---cc----------
Confidence 346789999999999988766554332211 001 1233333 3333334455555555554332 00
Q ss_pred ccCCCCceEEEECch----HHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEec
Q psy496 146 ELPRKRGSILYCTAG----ILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMS 213 (319)
Q Consensus 146 ~~~~~~~~Iiv~Tpg----~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lS 213 (319)
-.++. .+.+.+... ...+|||||+|... . .-....++.+.. ..+.++|+++
T Consensus 69 ----------~~~~~~l~~~~~~~l~~~----~~~~lviDe~~~l~-~-~~~l~~l~~l~~-~~~~~vvl~G 123 (131)
T PF13401_consen 69 ----------RQTSDELRSLLIDALDRR----RVVLLVIDEADHLF-S-DEFLEFLRSLLN-ESNIKVVLVG 123 (131)
T ss_dssp ----------TS-HHHHHHHHHHHHHHC----TEEEEEEETTHHHH-T-HHHHHHHHHHTC-SCBEEEEEEE
T ss_pred ----------cCCHHHHHHHHHHHHHhc----CCeEEEEeChHhcC-C-HHHHHHHHHHHh-CCCCeEEEEE
Confidence 01222 334444332 22789999999831 3 334444444444 4455655543
No 141
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.87 E-value=3.4e-05 Score=66.74 Aligned_cols=61 Identities=21% Similarity=0.203 Sum_probs=39.5
Q ss_pred ccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHH
Q psy496 48 TQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAER 121 (319)
Q Consensus 48 ~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~ 121 (319)
-|.+++..+.. ..++..+|+|+.|||||+.. ..+.+.+...+ .+|+++.||...+..+.+.
T Consensus 5 ~Q~~a~~~~l~--------~~~~~~~l~G~aGtGKT~~l-~~~~~~~~~~g----~~v~~~apT~~Aa~~L~~~ 65 (196)
T PF13604_consen 5 EQREAVRAILT--------SGDRVSVLQGPAGTGKTTLL-KALAEALEAAG----KRVIGLAPTNKAAKELREK 65 (196)
T ss_dssp HHHHHHHHHHH--------CTCSEEEEEESTTSTHHHHH-HHHHHHHHHTT------EEEEESSHHHHHHHHHH
T ss_pred HHHHHHHHHHh--------cCCeEEEEEECCCCCHHHHH-HHHHHHHHhCC----CeEEEECCcHHHHHHHHHh
Confidence 36666544432 23467889999999999764 33444444432 4788888999988887665
No 142
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.86 E-value=9.3e-05 Score=69.81 Aligned_cols=132 Identities=17% Similarity=0.208 Sum_probs=75.3
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccc
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKE 146 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~ 146 (319)
..++.++++||+|+|||+........ +... +....++.+-|.|..|....+.+++.++.. +
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~-l~~~--g~~V~lItaDtyR~gAveQLk~yae~lgvp-------v--------- 264 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQ-LLKQ--NRTVGFITTDTFRSGAVEQFQGYADKLDVE-------L--------- 264 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHH-HHHc--CCeEEEEeCCccCccHHHHHHHHhhcCCCC-------E---------
Confidence 34678899999999999887665543 2222 234556666678876666555555433211 1
Q ss_pred cCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhh-ccccCceEEEeccccChhhHhhhh
Q psy496 147 LPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVT-DKRKDLKLILMSATLNAEKFSQFF 225 (319)
Q Consensus 147 ~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~-~~~~~~qiv~lSAT~~~~~l~~~l 225 (319)
....+|.-+.+.+.......++++|+||=+-+. ...+-.+..+..+. ...++.-++.+||+....++.+.+
T Consensus 265 -------~~~~dp~dL~~al~~l~~~~~~D~VLIDTAGr~-~~d~~~l~EL~~l~~~~~p~~~~LVLsag~~~~d~~~i~ 336 (407)
T PRK12726 265 -------IVATSPAELEEAVQYMTYVNCVDHILIDTVGRN-YLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMTIL 336 (407)
T ss_pred -------EecCCHHHHHHHHHHHHhcCCCCEEEEECCCCC-ccCHHHHHHHHHHhhccCCceEEEECCCcccHHHHHHHH
Confidence 112345555554432222356899999999752 22222233333333 234555567889988555555544
No 143
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.83 E-value=0.00012 Score=73.51 Aligned_cols=137 Identities=20% Similarity=0.204 Sum_probs=74.2
Q ss_pred HHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhC-CCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEE
Q psy496 60 NKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARN-RGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVG 138 (319)
Q Consensus 60 ~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~-~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg 138 (319)
+..+..+-.+...+|+|++|||||+.....+ ..+.... .....+|+++.||--.|..+.+......... +..
T Consensus 151 k~A~~~al~~~~~vitGgpGTGKTt~v~~ll-~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l----~~~-- 223 (586)
T TIGR01447 151 KVAVALALKSNFSLITGGPGTGKTTTVARLL-LALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNL----AAA-- 223 (586)
T ss_pred HHHHHHHhhCCeEEEEcCCCCCHHHHHHHHH-HHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccc----ccc--
Confidence 3455556667899999999999998764433 2222211 1113478888999998888777665432211 000
Q ss_pred EEEecccccCCCCceEEEECchHHHHHHh-------cCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEE
Q psy496 139 YQIRLEKELPRKRGSILYCTAGILPEVMQ-------SDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLIL 211 (319)
Q Consensus 139 ~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~-------~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~ 211 (319)
.. .. ....+-..|-.+++.... .......+++|||||+-+ +....+..+++.+ ++..|+|+
T Consensus 224 -----~~-~~-~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSM--vd~~l~~~ll~al---~~~~rlIl 291 (586)
T TIGR01447 224 -----EA-LI-AALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASM--VDLPLMAKLLKAL---PPNTKLIL 291 (586)
T ss_pred -----hh-hh-hccccccchhhhhhcccCCcchhhhcccCCCcccEEEEccccc--CCHHHHHHHHHhc---CCCCEEEE
Confidence 00 00 000011223222222111 011223689999999998 5555555555433 45678877
Q ss_pred eccc
Q psy496 212 MSAT 215 (319)
Q Consensus 212 lSAT 215 (319)
+--.
T Consensus 292 vGD~ 295 (586)
T TIGR01447 292 LGDK 295 (586)
T ss_pred ECCh
Confidence 6443
No 144
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=97.82 E-value=0.00021 Score=75.50 Aligned_cols=137 Identities=15% Similarity=0.055 Sum_probs=72.2
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEe-c--
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIR-L-- 143 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~-~-- 143 (319)
.++.+.||+=+.|.|||......+ ..+... .+....+|+++|...+ .+-.+.+.+..... ..+.+.-. .
T Consensus 186 ~~g~gGILADEMGLGKTlQaIalL-~~L~~~-~~~~gp~LIVvP~SlL-~nW~~Ei~kw~p~l-----~v~~~~G~~~eR 257 (1033)
T PLN03142 186 ENGINGILADEMGLGKTLQTISLL-GYLHEY-RGITGPHMVVAPKSTL-GNWMNEIRRFCPVL-----RAVKFHGNPEER 257 (1033)
T ss_pred hcCCCEEEEeCCCccHHHHHHHHH-HHHHHh-cCCCCCEEEEeChHHH-HHHHHHHHHHCCCC-----ceEEEeCCHHHH
Confidence 456778999999999998764433 333221 1222345555696443 45555555543211 01111100 0
Q ss_pred ----ccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 144 ----EKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 144 ----~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
.......+.+|+++|++.+.+....-. --++++||+||||...-........++.+ . ....+++|+|+
T Consensus 258 ~~~~~~~~~~~~~dVvITSYe~l~~e~~~L~-k~~W~~VIvDEAHrIKN~~Sklskalr~L---~-a~~RLLLTGTP 329 (1033)
T PLN03142 258 AHQREELLVAGKFDVCVTSFEMAIKEKTALK-RFSWRYIIIDEAHRIKNENSLLSKTMRLF---S-TNYRLLITGTP 329 (1033)
T ss_pred HHHHHHHhcccCCCcceecHHHHHHHHHHhc-cCCCCEEEEcCccccCCHHHHHHHHHHHh---h-cCcEEEEecCC
Confidence 001112346799999998876542111 13578999999997221111222222222 2 22458899998
No 145
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=97.80 E-value=2.7e-05 Score=79.74 Aligned_cols=107 Identities=20% Similarity=0.119 Sum_probs=69.4
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccccc--
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKEL-- 147 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~-- 147 (319)
+.-+.-..||.|||+++.+|++-.... |..+.|+. ++..||..-++.+...+... |..+|......+..
T Consensus 90 ~G~IaEm~TGEGKTL~a~l~ayl~aL~---G~~VhVvT--~NdyLA~RD~e~m~pvy~~L----GLsvg~i~~~~~~~er 160 (870)
T CHL00122 90 DGKIAEMKTGEGKTLVATLPAYLNALT---GKGVHIVT--VNDYLAKRDQEWMGQIYRFL----GLTVGLIQEGMSSEER 160 (870)
T ss_pred CCccccccCCCCchHHHHHHHHHHHhc---CCceEEEe--CCHHHHHHHHHHHHHHHHHc----CCceeeeCCCCChHHH
Confidence 334555569999999999988533332 22344554 99999999888776665443 77777543321111
Q ss_pred -CCCCceEEEECc-----hHHHHHHhcCC---CCCCccEEEEecccc
Q psy496 148 -PRKRGSILYCTA-----GILPEVMQSDP---ILSGVSHIVMDEIHE 185 (319)
Q Consensus 148 -~~~~~~Iiv~Tp-----g~ll~~l~~~~---~l~~v~~vViDEah~ 185 (319)
..-.++|+++|. +.|.+.+...+ ....+.+.||||+|.
T Consensus 161 r~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDS 207 (870)
T CHL00122 161 KKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDS 207 (870)
T ss_pred HHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchh
Confidence 112578999998 45566653222 256789999999997
No 146
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.76 E-value=0.00023 Score=71.71 Aligned_cols=136 Identities=18% Similarity=0.179 Sum_probs=73.4
Q ss_pred HHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEE
Q psy496 60 NKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGY 139 (319)
Q Consensus 60 ~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~ 139 (319)
+..+..+..+...+|+|++|||||+.....+ ..+.........+|+++.||.-.|..+.+.+....... +.
T Consensus 158 k~Av~~a~~~~~~vItGgpGTGKTt~v~~ll-~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~----~~---- 228 (615)
T PRK10875 158 KVAAAVALTRRISVISGGPGTGKTTTVAKLL-AALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQL----PL---- 228 (615)
T ss_pred HHHHHHHhcCCeEEEEeCCCCCHHHHHHHHH-HHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcc----cc----
Confidence 3444445556789999999999998764433 22322222224578888999999888887665432211 00
Q ss_pred EEecccccCCCCceEEEECchHHHHHHhc-------CCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEe
Q psy496 140 QIRLEKELPRKRGSILYCTAGILPEVMQS-------DPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILM 212 (319)
Q Consensus 140 ~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~-------~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~l 212 (319)
. +... .....-..|-.+++..... ......++++||||+-+ +....+..+++. .+++.|+|++
T Consensus 229 --~--~~~~-~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSM--vd~~lm~~ll~a---l~~~~rlIlv 298 (615)
T PRK10875 229 --T--DEQK-KRIPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASM--VDLPMMARLIDA---LPPHARVIFL 298 (615)
T ss_pred --c--hhhh-hcCCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhc--ccHHHHHHHHHh---cccCCEEEEe
Confidence 0 0000 0000011122222211100 11223578999999998 555555555554 3456788776
Q ss_pred cc
Q psy496 213 SA 214 (319)
Q Consensus 213 SA 214 (319)
.-
T Consensus 299 GD 300 (615)
T PRK10875 299 GD 300 (615)
T ss_pred cc
Confidence 43
No 147
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.75 E-value=5.2e-05 Score=69.64 Aligned_cols=61 Identities=13% Similarity=-0.015 Sum_probs=45.3
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCC-CccEEEEecccHHHHHHHHHHHHHH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRG-SECCIMVTQPRRISAIAIAERVAQE 125 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~-~~~~vl~~~Ptr~la~q~~~~~~~~ 125 (319)
...+++++++.||||+|||.+++.|.+..+...+.. ...+++++.+|..+..|....+.+.
T Consensus 23 ~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 23 VLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred HHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 344678899999999999999999998765543321 1237888889999877776666543
No 148
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.75 E-value=5.2e-05 Score=69.64 Aligned_cols=61 Identities=13% Similarity=-0.015 Sum_probs=45.3
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCC-CccEEEEecccHHHHHHHHHHHHHH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRG-SECCIMVTQPRRISAIAIAERVAQE 125 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~-~~~~vl~~~Ptr~la~q~~~~~~~~ 125 (319)
...+++++++.||||+|||.+++.|.+..+...+.. ...+++++.+|..+..|....+.+.
T Consensus 23 ~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 23 VLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred HHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 344678899999999999999999998765543321 1237888889999877776666543
No 149
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.75 E-value=0.0005 Score=66.51 Aligned_cols=128 Identities=14% Similarity=0.135 Sum_probs=69.8
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccC
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELP 148 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~ 148 (319)
+.++++.||||+|||+............ ..+....++-.-|.|..+....+.+++.++..+
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~-~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~------------------ 281 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALL-YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV------------------ 281 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCeEEEEECCccHHHHHHHHHHHHHHhCCce------------------
Confidence 5688999999999998876544332201 122344555556777766655555655433211
Q ss_pred CCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhh-ccccCceEEEeccccChhhHhh
Q psy496 149 RKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVT-DKRKDLKLILMSATLNAEKFSQ 223 (319)
Q Consensus 149 ~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~-~~~~~~qiv~lSAT~~~~~l~~ 223 (319)
....+++.+.+.+.. +.++++|+||.+-...........+...+. ...+....+++|||....++.+
T Consensus 282 -----~~~~~~~~l~~~l~~---~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~ 349 (424)
T PRK05703 282 -----EVVYDPKELAKALEQ---LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKD 349 (424)
T ss_pred -----EccCCHHhHHHHHHH---hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHH
Confidence 111234445444432 346899999999752222222222222222 1223345788999995444443
No 150
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=97.66 E-value=0.00015 Score=74.55 Aligned_cols=107 Identities=21% Similarity=0.140 Sum_probs=71.0
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc---c
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK---E 146 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~---~ 146 (319)
+--+.-..||-|||+++.+|++-....+. .+.|+. +..-||..=++.+...+... |..+|....... +
T Consensus 99 ~G~IAEM~TGEGKTL~atlpaylnAL~Gk---gVhVVT--vNdYLA~RDae~m~~vy~~L----GLtvg~i~~~~~~~er 169 (939)
T PRK12902 99 EGQIAEMKTGEGKTLVATLPSYLNALTGK---GVHVVT--VNDYLARRDAEWMGQVHRFL----GLSVGLIQQDMSPEER 169 (939)
T ss_pred CCceeeecCCCChhHHHHHHHHHHhhcCC---CeEEEe--CCHHHHHhHHHHHHHHHHHh----CCeEEEECCCCChHHH
Confidence 34455666999999999998875444333 345555 88889888877766665443 777875432111 1
Q ss_pred cCCCCceEEEECchHH-----HHHHhcCC---CCCCccEEEEecccc
Q psy496 147 LPRKRGSILYCTAGIL-----PEVMQSDP---ILSGVSHIVMDEIHE 185 (319)
Q Consensus 147 ~~~~~~~Iiv~Tpg~l-----l~~l~~~~---~l~~v~~vViDEah~ 185 (319)
...-.++|+++|+..+ .+.+..+. ....+.+.||||+|.
T Consensus 170 r~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDS 216 (939)
T PRK12902 170 KKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDS 216 (939)
T ss_pred HHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccc
Confidence 1113678999999555 66664322 367789999999996
No 151
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.62 E-value=8.3e-05 Score=70.24 Aligned_cols=92 Identities=14% Similarity=0.086 Sum_probs=55.9
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccCC
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELPR 149 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~~ 149 (319)
+.++|.|.+|||||+.+...+. .+..... ...++++.+...+...+.+.+..... .
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~-~l~~~~~--~~~~~~l~~n~~l~~~l~~~l~~~~~---------------------~ 57 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAK-ELQNSEE--GKKVLYLCGNHPLRNKLREQLAKKYN---------------------P 57 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHH-Hhhcccc--CCceEEEEecchHHHHHHHHHhhhcc---------------------c
Confidence 4689999999999987655433 3311112 23555666888888877776655420 0
Q ss_pred CCceEEEECchHHHHHHh-cCCCCCCccEEEEecccc
Q psy496 150 KRGSILYCTAGILPEVMQ-SDPILSGVSHIVMDEIHE 185 (319)
Q Consensus 150 ~~~~Iiv~Tpg~ll~~l~-~~~~l~~v~~vViDEah~ 185 (319)
......+..+..+..... .......+++||+||||+
T Consensus 58 ~~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqr 94 (352)
T PF09848_consen 58 KLKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQR 94 (352)
T ss_pred chhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHh
Confidence 001122334444444442 334467899999999997
No 152
>COG4889 Predicted helicase [General function prediction only]
Probab=97.61 E-value=0.0004 Score=70.69 Aligned_cols=132 Identities=16% Similarity=0.077 Sum_probs=80.8
Q ss_pred CccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHH
Q psy496 41 SECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAE 120 (319)
Q Consensus 41 ~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~ 120 (319)
.+.++.|.|+.||.+..+|... ...++-++- .|+|||...+. +.+++.. .++|++.|.-.|-.|..+
T Consensus 158 ~~kk~R~hQq~Aid~a~~~F~~---n~RGkLIMA---cGTGKTfTsLk-isEala~------~~iL~LvPSIsLLsQTlr 224 (1518)
T COG4889 158 KPKKPRPHQQTAIDAAKEGFSD---NDRGKLIMA---CGTGKTFTSLK-ISEALAA------ARILFLVPSISLLSQTLR 224 (1518)
T ss_pred CCCCCChhHHHHHHHHHhhccc---ccCCcEEEe---cCCCccchHHH-HHHHHhh------hheEeecchHHHHHHHHH
Confidence 3455679999999998877553 223333322 68999977644 4455443 489999999999999988
Q ss_pred HHHHHhccccC--CC--CceEEEE---Eeccccc------------------CCCCceEEEECchHHHHHH-hcCCCCCC
Q psy496 121 RVAQERDEQCG--RP--GSSVGYQ---IRLEKEL------------------PRKRGSILYCTAGILPEVM-QSDPILSG 174 (319)
Q Consensus 121 ~~~~~~~~~~~--~~--g~~vg~~---~~~~~~~------------------~~~~~~Iiv~Tpg~ll~~l-~~~~~l~~ 174 (319)
.|.......+. .+ ...++-. +...+-. ...+.-++++|.+.+...- .....+..
T Consensus 225 ew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~~~ 304 (1518)
T COG4889 225 EWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGLDE 304 (1518)
T ss_pred HHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCCCC
Confidence 88765221110 00 0011100 0000000 0012238899998887766 44456889
Q ss_pred ccEEEEecccc
Q psy496 175 VSHIVMDEIHE 185 (319)
Q Consensus 175 v~~vViDEah~ 185 (319)
+++||.||||+
T Consensus 305 fDliicDEAHR 315 (1518)
T COG4889 305 FDLIICDEAHR 315 (1518)
T ss_pred ccEEEecchhc
Confidence 99999999997
No 153
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=97.53 E-value=0.00033 Score=74.25 Aligned_cols=138 Identities=16% Similarity=0.146 Sum_probs=82.1
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEe-cccc
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIR-LEKE 146 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~-~~~~ 146 (319)
..+.-+|+=-||||||....... ..+... .....|+++.=+++|-.|+.+.+.......... . ... ... ....
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A-~~l~~~--~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~~~-~-~~~-s~~~Lk~~ 345 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLA-RLLLEL--PKNPKVLFVVDRKDLDDQTSDEFQSFGKVAFND-P-KAE-STSELKEL 345 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHH-HHHHhc--cCCCeEEEEechHHHHHHHHHHHHHHHHhhhhc-c-ccc-CHHHHHHH
Confidence 34568999999999997765443 222222 224578888899999999999888764332210 0 000 011 1111
Q ss_pred cCCCCceEEEECchHHHHHHhcCC--CCC-CccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 147 LPRKRGSILYCTAGILPEVMQSDP--ILS-GVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 147 ~~~~~~~Iiv~Tpg~ll~~l~~~~--~l~-~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
.......|+++|-+.+-....... .+. .==+||+||||+ ...+.....++... ++...++|++|+
T Consensus 346 l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHR--SQ~G~~~~~~~~~~---~~a~~~gFTGTP 413 (962)
T COG0610 346 LEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHR--SQYGELAKLLKKAL---KKAIFIGFTGTP 413 (962)
T ss_pred HhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhh--ccccHHHHHHHHHh---ccceEEEeeCCc
Confidence 111234699999887766663321 111 223689999996 34444444444332 346899999999
No 154
>PRK14974 cell division protein FtsY; Provisional
Probab=97.53 E-value=0.00081 Score=62.95 Aligned_cols=133 Identities=16% Similarity=0.146 Sum_probs=67.8
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccC
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELP 148 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~ 148 (319)
...++++|++|+|||+....... .+... +....++..-+.|..+....+.++..++..+ . ......
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~-~l~~~--g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v-------~---~~~~g~- 205 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAY-YLKKN--GFSVVIAAGDTFRAGAIEQLEEHAERLGVKV-------I---KHKYGA- 205 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHH-HHHHc--CCeEEEecCCcCcHHHHHHHHHHHHHcCCce-------e---cccCCC-
Confidence 45788899999999987765442 23222 2222223223456666555555655544321 1 000000
Q ss_pred CCCceEEEECchH-HHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc--ChhhHhhhh
Q psy496 149 RKRGSILYCTAGI-LPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL--NAEKFSQFF 225 (319)
Q Consensus 149 ~~~~~Iiv~Tpg~-ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~l 225 (319)
.|-. +.+.+.. ....++++|+||++.+..-..+.+..+-+......|+..++.+|||. +....++.|
T Consensus 206 ---------dp~~v~~~ai~~-~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f 275 (336)
T PRK14974 206 ---------DPAAVAYDAIEH-AKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREF 275 (336)
T ss_pred ---------CHHHHHHHHHHH-HHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHH
Confidence 1111 2222211 01246789999999963223333333322222345677788899988 433444444
No 155
>PRK10536 hypothetical protein; Provisional
Probab=97.50 E-value=0.00047 Score=61.78 Aligned_cols=46 Identities=22% Similarity=0.156 Sum_probs=32.8
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRI 113 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~ 113 (319)
...+++.+++.||+|||||.......++.+.... ..+++++.|.-.
T Consensus 70 al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~~---~~kIiI~RP~v~ 115 (262)
T PRK10536 70 AIESKQLIFATGEAGCGKTWISAAKAAEALIHKD---VDRIIVTRPVLQ 115 (262)
T ss_pred HHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcCC---eeEEEEeCCCCC
Confidence 3344678999999999999887776666654422 447777777654
No 156
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.49 E-value=0.0015 Score=59.38 Aligned_cols=133 Identities=15% Similarity=0.186 Sum_probs=69.4
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccccc
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKEL 147 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~ 147 (319)
+++.+.+.|++|+|||+.+...... +.. .+....++..-+.|.-+.+..+..+... +..+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~-l~~--~~~~v~~i~~D~~ri~~~~ql~~~~~~~-------~~~~---------- 133 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQ-FHG--KKKTVGFITTDHSRIGTVQQLQDYVKTI-------GFEV---------- 133 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHH-HHH--cCCeEEEEecCCCCHHHHHHHHHHhhhc-------CceE----------
Confidence 3478999999999999877654432 222 1223445554566644333323232221 1111
Q ss_pred CCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEeccccChh---hHhhh
Q psy496 148 PRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATLNAE---KFSQF 224 (319)
Q Consensus 148 ~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~~~~---~l~~~ 224 (319)
+...+|..+.+.+..-....+++++|||.+-+.....+.+..+.+.+....++..++.+|||...+ .+.+.
T Consensus 134 ------~~~~~~~~l~~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~ 207 (270)
T PRK06731 134 ------IAVRDEAAMTRALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEIITN 207 (270)
T ss_pred ------EecCCHHHHHHHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHHHHHH
Confidence 111244445444422111246899999999752223334444444433344555677899998443 44444
Q ss_pred hC
Q psy496 225 FG 226 (319)
Q Consensus 225 l~ 226 (319)
|.
T Consensus 208 f~ 209 (270)
T PRK06731 208 FK 209 (270)
T ss_pred hC
Confidence 43
No 157
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.0014 Score=67.07 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=72.1
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccC
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELP 148 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~ 148 (319)
++.+.+.||||+|||+.+...........+ .....++..-+.|.-+....+.+++.++..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G-~kkV~lit~Dt~RigA~eQL~~~a~~~gvpv------------------ 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREG-ADQLALLTTDSFRIGALEQLRIYGRILGVPV------------------ 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcC-CCeEEEecCcccchHHHHHHHHHHHhCCCCc------------------
Confidence 567899999999999887665433222221 1123333344567666666666666543221
Q ss_pred CCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhh-ccccCceEEEeccccChhhH
Q psy496 149 RKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVT-DKRKDLKLILMSATLNAEKF 221 (319)
Q Consensus 149 ~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~-~~~~~~qiv~lSAT~~~~~l 221 (319)
..+.+|..+.+.+.. +.+.++|+||=+-+. .....+...+..+. ...+...++.+|||...+.+
T Consensus 246 -----~~~~~~~~l~~al~~---~~~~D~VLIDTAGRs-~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l 310 (767)
T PRK14723 246 -----HAVKDAADLRFALAA---LGDKHLVLIDTVGMS-QRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTL 310 (767)
T ss_pred -----cccCCHHHHHHHHHH---hcCCCEEEEeCCCCC-ccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHH
Confidence 112256666555542 457789999999852 22222334444433 34455678889999844433
No 158
>KOG0989|consensus
Probab=97.44 E-value=0.00032 Score=63.71 Aligned_cols=155 Identities=24% Similarity=0.290 Sum_probs=81.0
Q ss_pred CCCccccccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhC
Q psy496 19 GCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARN 98 (319)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~ 98 (319)
|.+...+.| .-.-|++..+.....-..-|.....+++ +.+.. .+.-+.+..||+|+|||.++.... .++....
T Consensus 13 ~~~~~~~~p--~~~swteKYrPkt~de~~gQe~vV~~L~---~a~~~-~~lp~~LFyGPpGTGKTStalafa-r~L~~~~ 85 (346)
T KOG0989|consen 13 GEESDKSVP--KHRSWTEKYRPKTFDELAGQEHVVQVLK---NALLR-RILPHYLFYGPPGTGKTSTALAFA-RALNCEQ 85 (346)
T ss_pred cccccccCC--CccchHHHhCCCcHHhhcchHHHHHHHH---HHHhh-cCCceEEeeCCCCCcHhHHHHHHH-HHhcCcc
Confidence 334444455 3344777766554444455666554443 33333 566789999999999998875543 3333211
Q ss_pred CCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHH-hcCC-CCCCcc
Q psy496 99 RGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVM-QSDP-ILSGVS 176 (319)
Q Consensus 99 ~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l-~~~~-~l~~v~ 176 (319)
+. |.|.+-... +.+. |..++ -+... ....+.... ...+ ...-++
T Consensus 86 -------~~--~~rvl~lna----Sder-------Gisvv----r~Kik----------~fakl~~~~~~~~~~~~~~fK 131 (346)
T KOG0989|consen 86 -------LF--PCRVLELNA----SDER-------GISVV----REKIK----------NFAKLTVLLKRSDGYPCPPFK 131 (346)
T ss_pred -------cc--ccchhhhcc----cccc-------cccch----hhhhc----------CHHHHhhccccccCCCCCcce
Confidence 11 333321111 1111 22111 00000 011111111 1122 256689
Q ss_pred EEEEecccccccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 177 HIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 177 ~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
.||+||||. +..+...++.+.+...+...++++..--+
T Consensus 132 iiIlDEcds--mtsdaq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 132 IIILDECDS--MTSDAQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred EEEEechhh--hhHHHHHHHHHHHhccccceEEEEEcCCh
Confidence 999999998 77777777777776666667777754433
No 159
>KOG0390|consensus
Probab=97.43 E-value=0.0013 Score=67.01 Aligned_cols=165 Identities=15% Similarity=0.094 Sum_probs=83.6
Q ss_pred cccccchhhHHHHHHhhhcCC--CCCcEEEecCCCCCccchhhHHHHHHHHHhCC--CCccEEEEecccHHHHHHHHHHH
Q psy496 47 VTQPRRISAIALINKCLTLSP--ILSPSIIYTSTGCGKTTQVPQFILDDEIARNR--GSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 47 ~~Q~~~ip~~~~~~~~l~~~~--~~~~vli~apTGSGKT~~~~l~il~~l~~~~~--~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
|.|++.+.-+= +++.+... +..-.+++=..|+|||....-.+...+..... ..-.+.++++|.- |...-.+.+
T Consensus 241 PHQ~EG~~FL~--knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~s-Lv~nWkkEF 317 (776)
T KOG0390|consen 241 PHQREGFEFLY--KNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSS-LVNNWKKEF 317 (776)
T ss_pred chHHHHHHHHH--hhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHH-HHHHHHHHH
Confidence 66766664432 34444432 34457778889999998765544443332211 0114566666853 334444445
Q ss_pred HHHhccccCCCCceEEEEEecccc-------------cCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccc-ccc
Q psy496 123 AQERDEQCGRPGSSVGYQIRLEKE-------------LPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHE-RSM 188 (319)
Q Consensus 123 ~~~~~~~~~~~g~~vg~~~~~~~~-------------~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~-~~~ 188 (319)
.+..+. +...+..+..... .......+++-+.+.+.+.... .....++++|+||.|+ +..
T Consensus 318 ~KWl~~-----~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~-il~~~~glLVcDEGHrlkN~ 391 (776)
T KOG0390|consen 318 GKWLGN-----HRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK-ILLIRPGLLVCDEGHRLKNS 391 (776)
T ss_pred HHhccc-----cccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH-HhcCCCCeEEECCCCCccch
Confidence 444332 0111222221111 0111234666677766544421 2346789999999997 322
Q ss_pred chhHHHHHHHhhhccccCceEEEeccccChhhHhhhh
Q psy496 189 ISDFLLAILKDVTDKRKDLKLILMSATLNAEKFSQFF 225 (319)
Q Consensus 189 ~~~~~~~~l~~~~~~~~~~qiv~lSAT~~~~~l~~~l 225 (319)
.+ .....+. +.. ..+.|++|.|+=-.++.+||
T Consensus 392 ~s-~~~kaL~---~l~-t~rRVLLSGTp~QNdl~EyF 423 (776)
T KOG0390|consen 392 DS-LTLKALS---SLK-TPRRVLLTGTPIQNDLKEYF 423 (776)
T ss_pred hh-HHHHHHH---hcC-CCceEEeeCCcccccHHHHH
Confidence 22 2222222 222 33678999999223444544
No 160
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.43 E-value=0.00035 Score=60.68 Aligned_cols=44 Identities=20% Similarity=0.093 Sum_probs=28.5
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRIS 114 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~l 114 (319)
+++.+++.||.|||||.......++.+..+ ..-+++++.|..+.
T Consensus 18 ~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g---~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLALAAALELVKEG---EYDKIIITRPPVEA 61 (205)
T ss_dssp H-SEEEEE--TTSSTTHHHHHHHHHHHHTT---S-SEEEEEE-S--T
T ss_pred hCCeEEEECCCCCcHHHHHHHHHHHHHHhC---CCcEEEEEecCCCC
Confidence 456799999999999988877777776552 24588888787543
No 161
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.39 E-value=0.00069 Score=59.59 Aligned_cols=92 Identities=17% Similarity=0.246 Sum_probs=58.1
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK 145 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~ 145 (319)
.+.++|.+...-.|.|||.+. .|++....++++ ..+.++.| ++|..|..+.+...++..+ +..+ +.+.+.+
T Consensus 38 ~~~~~n~v~QlnMGeGKTsVI-~Pmla~~LAdg~---~LvrviVp-k~Ll~q~~~~L~~~lg~l~---~r~i-~~lpFsR 108 (229)
T PF12340_consen 38 PPSGKNSVMQLNMGEGKTSVI-VPMLALALADGS---RLVRVIVP-KALLEQMRQMLRSRLGGLL---NRRI-YHLPFSR 108 (229)
T ss_pred CCCCCCeEeeecccCCccchH-HHHHHHHHcCCC---cEEEEEcC-HHHHHHHHHHHHHHHHHHh---CCee-EEecccC
Confidence 456788999999999999775 677766666553 24444446 4677888777777666544 4433 2333322
Q ss_pred ccCC----------------CCceEEEECchHHHHHH
Q psy496 146 ELPR----------------KRGSILYCTAGILPEVM 166 (319)
Q Consensus 146 ~~~~----------------~~~~Iiv~Tpg~ll~~l 166 (319)
.... .+..|+++||+.++...
T Consensus 109 ~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~ 145 (229)
T PF12340_consen 109 STPLTPETLEKIRQLLEECMRSGGILLATPEHILSFK 145 (229)
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHH
Confidence 2211 23459999998886543
No 162
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.39 E-value=0.0021 Score=61.62 Aligned_cols=129 Identities=18% Similarity=0.163 Sum_probs=71.2
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccC
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELP 148 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~ 148 (319)
+..++++||+|||||+............ .+....++..-+.|..+....+++++..+.. .
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~--~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp-------~----------- 282 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH--MGKSVSLYTTDNYRIAAIEQLKRYADTMGMP-------F----------- 282 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh--cCCeEEEecccchhhhHHHHHHHHHHhcCCC-------e-----------
Confidence 3468899999999999887765443222 2234455555678888877666666543321 1
Q ss_pred CCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhh---ccccCceEEEecccc---ChhhHh
Q psy496 149 RKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVT---DKRKDLKLILMSATL---NAEKFS 222 (319)
Q Consensus 149 ~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~---~~~~~~qiv~lSAT~---~~~~l~ 222 (319)
+.+..+..+.+.+.. .++++|+||=+-......+.+..+.+.+. ...+.-.++.+|||. +...+.
T Consensus 283 -----~~~~~~~~l~~~l~~----~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~ 353 (432)
T PRK12724 283 -----YPVKDIKKFKETLAR----DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVL 353 (432)
T ss_pred -----eehHHHHHHHHHHHh----CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHH
Confidence 000012233443331 46899999987642112222222222222 112334678899999 344555
Q ss_pred hhhC
Q psy496 223 QFFG 226 (319)
Q Consensus 223 ~~l~ 226 (319)
+.|.
T Consensus 354 ~~f~ 357 (432)
T PRK12724 354 KAYE 357 (432)
T ss_pred HHhc
Confidence 5554
No 163
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.39 E-value=0.0013 Score=52.37 Aligned_cols=20 Identities=30% Similarity=0.393 Sum_probs=16.6
Q ss_pred CCCcEEEecCCCCCccchhh
Q psy496 68 ILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~ 87 (319)
.+..++|.||+|+|||....
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~ 37 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLAR 37 (151)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 46789999999999996543
No 164
>PRK04296 thymidine kinase; Provisional
Probab=97.37 E-value=0.0014 Score=56.43 Aligned_cols=36 Identities=25% Similarity=0.344 Sum_probs=24.1
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecc
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQP 110 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~P 110 (319)
...+++||+|+|||+.....+.+.... + .+++++.|
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~-g----~~v~i~k~ 38 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEER-G----MKVLVFKP 38 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHc-C----CeEEEEec
Confidence 457899999999998876665544332 2 25666545
No 165
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.36 E-value=6.9e-05 Score=67.67 Aligned_cols=104 Identities=18% Similarity=0.159 Sum_probs=64.2
Q ss_pred EEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccC---C
Q psy496 73 IIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELP---R 149 (319)
Q Consensus 73 li~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~---~ 149 (319)
+..-.||=|||++..+|..-.... |..+.|+. ...-||..=++.+...+... |..+|.......... .
T Consensus 94 laEm~TGEGKTli~~l~a~~~AL~---G~~V~vvT--~NdyLA~RD~~~~~~~y~~L----Glsv~~~~~~~~~~~r~~~ 164 (266)
T PF07517_consen 94 LAEMKTGEGKTLIAALPAALNALQ---GKGVHVVT--SNDYLAKRDAEEMRPFYEFL----GLSVGIITSDMSSEERREA 164 (266)
T ss_dssp EEEESTTSHHHHHHHHHHHHHHTT---SS-EEEEE--SSHHHHHHHHHHHHHHHHHT----T--EEEEETTTEHHHHHHH
T ss_pred eEEecCCCCcHHHHHHHHHHHHHh---cCCcEEEe--ccHHHhhccHHHHHHHHHHh----hhccccCccccCHHHHHHH
Confidence 444459999999987776544333 23455665 77778888777777666543 777876544322110 0
Q ss_pred CCceEEEECchHH-----HHHHhcCC---CCCCccEEEEecccc
Q psy496 150 KRGSILYCTAGIL-----PEVMQSDP---ILSGVSHIVMDEIHE 185 (319)
Q Consensus 150 ~~~~Iiv~Tpg~l-----l~~l~~~~---~l~~v~~vViDEah~ 185 (319)
-.++|+++|.+.+ .+.+.... ....+.++||||+|.
T Consensus 165 Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs 208 (266)
T PF07517_consen 165 YAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDS 208 (266)
T ss_dssp HHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHH
T ss_pred HhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccce
Confidence 1357999998555 33332221 257899999999996
No 166
>PRK06526 transposase; Provisional
Probab=97.34 E-value=0.00051 Score=61.91 Aligned_cols=23 Identities=17% Similarity=0.151 Sum_probs=18.5
Q ss_pred CCCCcEEEecCCCCCccchhhHH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQF 89 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~ 89 (319)
..+++++++||+|+|||......
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al 118 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGL 118 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHH
Confidence 45688999999999999765443
No 167
>KOG4150|consensus
Probab=97.32 E-value=0.00046 Score=67.22 Aligned_cols=225 Identities=11% Similarity=-0.032 Sum_probs=122.3
Q ss_pred HHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEE
Q psy496 59 INKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVG 138 (319)
Q Consensus 59 ~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg 138 (319)
.-+++..+..++++.+...|.|||.+++.+....-+.... ....++..|+.++++...+-+.-........-...|.
T Consensus 291 ~~~~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~---~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~A~V~ 367 (1034)
T KOG4150|consen 291 SLELLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH---ATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKSAYVE 367 (1034)
T ss_pred hHHHHhhhhhcccccccchhhcCCccCcccchhhhhhcCc---ccceecchhHHHHhhccCCceEEEEEehhhhhcceee
Confidence 3455556666777888888999999999877665443322 3456777799999876544221111100000000011
Q ss_pred E----EEecccccCCCCceEEEECchHHHHHHhcCC-----CCCCccEEEEecccc-cccchhHHHHHHHhhhc------
Q psy496 139 Y----QIRLEKELPRKRGSILYCTAGILPEVMQSDP-----ILSGVSHIVMDEIHE-RSMISDFLLAILKDVTD------ 202 (319)
Q Consensus 139 ~----~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~-----~l~~v~~vViDEah~-~~~~~~~~~~~l~~~~~------ 202 (319)
. ....++.....+.+.+++.|.........+. .+-+..+++.||+|- .++........++.+..
T Consensus 368 ~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~~R~L~~L~~~F~ 447 (1034)
T KOG4150|consen 368 MSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQLRALSDLIKGFE 447 (1034)
T ss_pred cccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecchhhHHHHHHHHHHHHHHHHH
Confidence 0 0001111111355788999987766553221 245678899999996 23333333333333322
Q ss_pred cccCceEEEecccc-ChhhHh-hhhC--CCCEEEeCCccccceeeeehhh-hhhhhhhHH--HHHHHHhhhhhhhccccC
Q psy496 203 KRKDLKLILMSATL-NAEKFS-QFFG--GAPILHIPGFTYPVQEYYLEDV-LNMTRKDLK--LILMSATLNAEKFSQFFG 275 (319)
Q Consensus 203 ~~~~~qiv~lSAT~-~~~~l~-~~l~--~~~~i~~~~r~~~v~~~~~~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 275 (319)
.+.+.+++-.|||+ ++-... +.++ ...++.++|.+..-+...+-.+ ........+ .+.....+-++...+ +
T Consensus 448 ~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~--~ 525 (1034)
T KOG4150|consen 448 ASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQH--G 525 (1034)
T ss_pred hhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHc--C
Confidence 34578999999999 555444 4444 3456888888776665543111 011111111 122222222322333 5
Q ss_pred CCcEEEeCCcccc
Q psy496 276 GAPILHIPGFTYP 288 (319)
Q Consensus 276 g~~LVFlp~R~~~ 288 (319)
-.++-|||.|+.|
T Consensus 526 ~R~IAFC~~R~~C 538 (1034)
T KOG4150|consen 526 LRCIAFCPSRKLC 538 (1034)
T ss_pred CcEEEeccHHHHH
Confidence 6799999999877
No 168
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.32 E-value=0.0027 Score=57.97 Aligned_cols=167 Identities=16% Similarity=0.147 Sum_probs=91.8
Q ss_pred cccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHh
Q psy496 47 VTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQER 126 (319)
Q Consensus 47 ~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~ 126 (319)
.-|-+++-...+..+.........-.+|-=.||.||--...-.|++...... .+.+.++.+..|-.+..+-+...-
T Consensus 40 ~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr----~r~vwvS~s~dL~~Da~RDl~DIG 115 (303)
T PF13872_consen 40 ALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGR----KRAVWVSVSNDLKYDAERDLRDIG 115 (303)
T ss_pred HHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCC----CceEEEECChhhhhHHHHHHHHhC
Confidence 4466655333332222222223455788888999999888777777765443 267777788888888777777652
Q ss_pred ccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcC----CCCC--------C-ccEEEEecccccc-cch--
Q psy496 127 DEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSD----PILS--------G-VSHIVMDEIHERS-MIS-- 190 (319)
Q Consensus 127 ~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~----~~l~--------~-v~~vViDEah~~~-~~~-- 190 (319)
...... ... .....++. ...+..|+++|.-.|...-... ..|+ + =.+||+||+|... ...
T Consensus 116 ~~~i~v--~~l-~~~~~~~~-~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~ 191 (303)
T PF13872_consen 116 ADNIPV--HPL-NKFKYGDI-IRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGS 191 (303)
T ss_pred CCcccc--eec-hhhccCcC-CCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccC
Confidence 221100 000 00111111 1123459999998776654211 0011 1 2489999999722 211
Q ss_pred ----hHHHHHHHhhhccccCceEEEecccc--ChhhHh
Q psy496 191 ----DFLLAILKDVTDKRKDLKLILMSATL--NAEKFS 222 (319)
Q Consensus 191 ----~~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~ 222 (319)
......+ .+...-|+.|+|.+|||. +++.++
T Consensus 192 ~~~sk~g~avl-~LQ~~LP~ARvvY~SATgasep~Nma 228 (303)
T PF13872_consen 192 KKPSKTGIAVL-ELQNRLPNARVVYASATGASEPRNMA 228 (303)
T ss_pred ccccHHHHHHH-HHHHhCCCCcEEEecccccCCCceee
Confidence 1222222 233334677999999998 555543
No 169
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.30 E-value=0.0034 Score=60.47 Aligned_cols=132 Identities=15% Similarity=0.151 Sum_probs=73.5
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccc
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKE 146 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~ 146 (319)
..++.+.+.||||+|||+.+....-......+ .....++..-..|.-+.+....+++.++...
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~-~~~v~~i~~d~~rigalEQL~~~a~ilGvp~---------------- 251 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHG-ADKVALLTTDSYRIGGHEQLRIYGKLLGVSV---------------- 251 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC-CCeEEEEecCCcchhHHHHHHHHHHHcCCce----------------
Confidence 35678999999999999887654433222211 1233455555667777666666666654221
Q ss_pred cCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhcc-ccCceEEEeccccChh---hHh
Q psy496 147 LPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDK-RKDLKLILMSATLNAE---KFS 222 (319)
Q Consensus 147 ~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~-~~~~qiv~lSAT~~~~---~l~ 222 (319)
..+.++.-+...+. .+.+.+.++||.+-+ ......+...++.+... .+...++++|||...+ .+.
T Consensus 252 -------~~v~~~~dl~~al~---~l~~~d~VLIDTaGr-sqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~~ 320 (420)
T PRK14721 252 -------RSIKDIADLQLMLH---ELRGKHMVLIDTVGM-SQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEVI 320 (420)
T ss_pred -------ecCCCHHHHHHHHH---HhcCCCEEEecCCCC-CcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHHH
Confidence 00112222222222 256788999999854 22223344445555432 2344678899998444 444
Q ss_pred hhhC
Q psy496 223 QFFG 226 (319)
Q Consensus 223 ~~l~ 226 (319)
..|.
T Consensus 321 ~~f~ 324 (420)
T PRK14721 321 SAYQ 324 (420)
T ss_pred HHhc
Confidence 4443
No 170
>PRK08181 transposase; Validated
Probab=97.27 E-value=0.002 Score=58.56 Aligned_cols=21 Identities=14% Similarity=0.262 Sum_probs=17.3
Q ss_pred CCCCcEEEecCCCCCccchhh
Q psy496 67 PILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~ 87 (319)
..+++++++||+|+|||....
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAA 124 (269)
T ss_pred hcCceEEEEecCCCcHHHHHH
Confidence 356789999999999996543
No 171
>KOG1803|consensus
Probab=97.26 E-value=0.0005 Score=67.47 Aligned_cols=49 Identities=24% Similarity=0.337 Sum_probs=40.1
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
...+|.||+|+|||......|.+.+..+. +|++..||.+....+.+++.
T Consensus 202 ~l~~I~GPPGTGKT~TlvEiI~qlvk~~k-----~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 202 DLLIIHGPPGTGKTRTLVEIISQLVKQKK-----RVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred CceEeeCCCCCCceeeHHHHHHHHHHcCC-----eEEEEcCchHHHHHHHHHhc
Confidence 45788999999999988877776665554 89999999999998887644
No 172
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.015 Score=57.42 Aligned_cols=207 Identities=14% Similarity=0.135 Sum_probs=100.7
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccc
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKE 146 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~ 146 (319)
..++.+.++||||+|||+............ ..+....++..-+.|..+....+.+...+ |..+.
T Consensus 348 ~~G~vIaLVGPtGvGKTTtaakLAa~la~~-~~gkkVaLIdtDtyRigA~EQLk~ya~iL-------gv~v~-------- 411 (559)
T PRK12727 348 ERGGVIALVGPTGAGKTTTIAKLAQRFAAQ-HAPRDVALVTTDTQRVGGREQLHSYGRQL-------GIAVH-------- 411 (559)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCceEEEecccccccHHHHHHHhhccc-------CceeE--------
Confidence 457889999999999998875544322221 11123344444456665544433332221 11110
Q ss_pred cCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEeccccChhhHhhhhC
Q psy496 147 LPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATLNAEKFSQFFG 226 (319)
Q Consensus 147 ~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~~~~~l~~~l~ 226 (319)
...+++.+...+.. +.++++||||.+-.. .....+...+..+........+++++++....++.+.+.
T Consensus 412 --------~a~d~~~L~~aL~~---l~~~DLVLIDTaG~s-~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~eii~ 479 (559)
T PRK12727 412 --------EADSAESLLDLLER---LRDYKLVLIDTAGMG-QRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDEVVR 479 (559)
T ss_pred --------ecCcHHHHHHHHHH---hccCCEEEecCCCcc-hhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHHHHH
Confidence 01133445555532 356899999999752 122222222222222222346788888874444443322
Q ss_pred CCCEEEeCCccccceeeeehhhhhhhhhhHHHHHHHHhhhhhhhccccCCCcEEEeCCcccc--ccccchHhHHHHhHhh
Q psy496 227 GAPILHIPGFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYP--VQEYYLEDVLNMTRTL 304 (319)
Q Consensus 227 ~~~~i~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~--v~~~~~~~~~~~~~~~ 304 (319)
... ..+..-.++... .. ...+ ..+.+..... +-++.-+..|.+.| .+...-..+....-.|
T Consensus 480 ~f~-------~~~~~gvILTKl-DE-t~~l-G~aLsv~~~~-------~LPI~yvt~GQ~VPeDL~~A~~~~Lv~r~~~l 542 (559)
T PRK12727 480 RFA-------HAKPQGVVLTKL-DE-TGRF-GSALSVVVDH-------QMPITWVTDGQRVPDDLHRANAASLVLRLEDL 542 (559)
T ss_pred HHH-------hhCCeEEEEecC-cC-ccch-hHHHHHHHHh-------CCCEEEEeCCCCchhhhhcCCHHHHHHHHHHH
Confidence 100 001111122111 10 1111 2222222211 33444444445554 4456677777777778
Q ss_pred ccccCCCCCCccCC
Q psy496 305 KRSETQQYPNDQQH 318 (319)
Q Consensus 305 ~~~~~~~~~~~~~~ 318 (319)
+|...-|.+.++-|
T Consensus 543 ~~~~~~~~~~~~~~ 556 (559)
T PRK12727 543 RRAADKPCTPEHNH 556 (559)
T ss_pred HhhccCCCChhhhc
Confidence 88888888887766
No 173
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.24 E-value=0.00068 Score=70.55 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=31.0
Q ss_pred CCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEec
Q psy496 169 DPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMS 213 (319)
Q Consensus 169 ~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lS 213 (319)
.+....++++||||+|+ +..+..-.+++.+...+....+|+.+
T Consensus 115 ~p~~~~~KV~IIDEad~--lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 115 APAESRYKIFIIDEAHM--VTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred chhcCCceEEEEechhh--cCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 34457899999999998 66666667777777666666666543
No 174
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=97.22 E-value=0.00071 Score=62.01 Aligned_cols=60 Identities=22% Similarity=0.186 Sum_probs=45.4
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhcc
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDE 128 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~ 128 (319)
.+++++|.|+.|||||++...-+...+...+ ...-+|+++..|+.+|..+..++...++.
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-VPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-STGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-CChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 5688999999999999988666655544332 34457999999999999999998886543
No 175
>KOG1123|consensus
Probab=97.22 E-value=0.00082 Score=64.64 Aligned_cols=124 Identities=15% Similarity=0.151 Sum_probs=70.1
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEE-EEEecccccC
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVG-YQIRLEKELP 148 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg-~~~~~~~~~~ 148 (319)
+.-+|+-|-|+|||++..-++.. -. -++++++..-.-+.|..+++........ ..++ +.....+. -
T Consensus 321 RSGiIVLPCGAGKtLVGvTAa~t----ik----K~clvLcts~VSVeQWkqQfk~wsti~d----~~i~rFTsd~Ke~-~ 387 (776)
T KOG1123|consen 321 RSGIIVLPCGAGKTLVGVTAACT----IK----KSCLVLCTSAVSVEQWKQQFKQWSTIQD----DQICRFTSDAKER-F 387 (776)
T ss_pred cCceEEEecCCCCceeeeeeeee----ec----ccEEEEecCccCHHHHHHHHHhhcccCc----cceEEeecccccc-C
Confidence 45688899999999876444321 11 1344444666666776666655433221 1121 11111111 1
Q ss_pred CCCceEEEECchHH-------------HHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEeccc
Q psy496 149 RKRGSILYCTAGIL-------------PEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSAT 215 (319)
Q Consensus 149 ~~~~~Iiv~Tpg~l-------------l~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT 215 (319)
...+.|+|+|..++ ++.+.. ..++++++||+|- +-..++.-++..+.. . --++++||
T Consensus 388 ~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~----~EWGllllDEVHv--vPA~MFRRVlsiv~a---H-cKLGLTAT 457 (776)
T KOG1123|consen 388 PSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRG----REWGLLLLDEVHV--VPAKMFRRVLSIVQA---H-CKLGLTAT 457 (776)
T ss_pred CCCCcEEEEeeehhhhcccccHHHHHHHHHHhc----CeeeeEEeehhcc--chHHHHHHHHHHHHH---H-hhccceeE
Confidence 23567999998665 344433 5789999999997 333333333443332 1 24799999
Q ss_pred c
Q psy496 216 L 216 (319)
Q Consensus 216 ~ 216 (319)
+
T Consensus 458 L 458 (776)
T KOG1123|consen 458 L 458 (776)
T ss_pred E
Confidence 9
No 176
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.21 E-value=0.002 Score=66.52 Aligned_cols=56 Identities=18% Similarity=0.125 Sum_probs=35.7
Q ss_pred HhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHH
Q psy496 61 KCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIA 119 (319)
Q Consensus 61 ~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~ 119 (319)
+++..+..++..+|+|++|||||+..- .+++.+...+ ....|+.+.||-..|..+.
T Consensus 330 ~Ai~~~~~~~~~iitGgpGTGKTt~l~-~i~~~~~~~~--~~~~v~l~ApTg~AA~~L~ 385 (720)
T TIGR01448 330 QALDTAIQHKVVILTGGPGTGKTTITR-AIIELAEELG--GLLPVGLAAPTGRAAKRLG 385 (720)
T ss_pred HHHHHHHhCCeEEEECCCCCCHHHHHH-HHHHHHHHcC--CCceEEEEeCchHHHHHHH
Confidence 333334456789999999999997653 3444433322 1236777789988776543
No 177
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=97.20 E-value=0.00087 Score=68.90 Aligned_cols=48 Identities=15% Similarity=0.021 Sum_probs=39.1
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAE 120 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~ 120 (319)
++.++|-||||+|||.+|++|.+-.....+ -+|++...|..|-.|+..
T Consensus 49 ~~~lviEAgTGtGKTlaYLlPai~~A~~~~----k~vVIST~T~~LQeQL~~ 96 (697)
T PRK11747 49 GRILVIEAGTGVGKTLSYLLAGIPIARAEK----KKLVISTATVALQEQLVS 96 (697)
T ss_pred cceEEEECCCCcchhHHHHHHHHHHHHHcC----CeEEEEcCCHHHHHHHHh
Confidence 467899999999999999999875443333 279999999999989854
No 178
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.16 E-value=0.0013 Score=66.02 Aligned_cols=48 Identities=23% Similarity=0.257 Sum_probs=32.8
Q ss_pred HHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEec
Q psy496 164 EVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMS 213 (319)
Q Consensus 164 ~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lS 213 (319)
+.....+.....+++||||+|+ +..+..-.+++.+...++...+|+.+
T Consensus 108 ~~~~~~P~~~~~KVvIIDEah~--Lt~~A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 108 DRAFYAPAQSRYRIFIVDEAHM--VTTAGFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred HHHHhhhhcCCceEEEEECCCc--CCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 3334445567899999999998 56666667777776655565555543
No 179
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.11 E-value=0.0022 Score=67.78 Aligned_cols=123 Identities=15% Similarity=0.129 Sum_probs=68.4
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
.++-|..++..+.. .+..++|+|+.|+|||+.. -.+.+.+...+ ..|+.+.||-..|..+.+
T Consensus 347 Ls~eQr~Av~~il~---------s~~v~vv~G~AGTGKTT~l-~~~~~~~e~~G----~~V~~~ApTGkAA~~L~e---- 408 (988)
T PRK13889 347 LSGEQADALAHVTD---------GRDLGVVVGYAGTGKSAML-GVAREAWEAAG----YEVRGAALSGIAAENLEG---- 408 (988)
T ss_pred CCHHHHHHHHHHhc---------CCCeEEEEeCCCCCHHHHH-HHHHHHHHHcC----CeEEEecCcHHHHHHHhh----
Confidence 34556666544332 1346789999999999863 33443333222 367888899776655432
Q ss_pred HhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHh-cCCCCCCccEEEEecccccccchhHHHHHHHhhhcc
Q psy496 125 ERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQ-SDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDK 203 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~-~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~ 203 (319)
.. |.. -.|-..++..+. ....+...++|||||+-+ +....+..+++....
T Consensus 409 ~t-------Gi~-------------------a~TI~sll~~~~~~~~~l~~~~vlIVDEASM--v~~~~m~~LL~~a~~- 459 (988)
T PRK13889 409 GS-------GIA-------------------SRTIASLEHGWGQGRDLLTSRDVLVIDEAGM--VGTRQLERVLSHAAD- 459 (988)
T ss_pred cc-------Ccc-------------------hhhHHHHHhhhcccccccccCcEEEEECccc--CCHHHHHHHHHhhhh-
Confidence 11 100 012222332222 223366789999999997 455555555554332
Q ss_pred ccCceEEEeccc
Q psy496 204 RKDLKLILMSAT 215 (319)
Q Consensus 204 ~~~~qiv~lSAT 215 (319)
...++|++.-+
T Consensus 460 -~garvVLVGD~ 470 (988)
T PRK13889 460 -AGAKVVLVGDP 470 (988)
T ss_pred -CCCEEEEECCH
Confidence 35577776544
No 180
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.09 E-value=0.00061 Score=59.48 Aligned_cols=54 Identities=26% Similarity=0.314 Sum_probs=36.4
Q ss_pred cEEEecCCCCCccchhhHHHHHHHH---HhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 71 PSIIYTSTGCGKTTQVPQFILDDEI---ARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l~il~~l~---~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
..+|+||+|||||......+..... ........+|++++|+...+.++.+++.+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 4899999999999766554433311 01123345888888999999999998887
No 181
>PF05729 NACHT: NACHT domain
Probab=97.07 E-value=0.0028 Score=52.22 Aligned_cols=52 Identities=19% Similarity=0.233 Sum_probs=30.3
Q ss_pred EEEEecccccccchh-----HHHHHHHhhhc--cccCceEEEeccccChhhHhhhhCCC
Q psy496 177 HIVMDEIHERSMISD-----FLLAILKDVTD--KRKDLKLILMSATLNAEKFSQFFGGA 228 (319)
Q Consensus 177 ~vViDEah~~~~~~~-----~~~~~l~~~~~--~~~~~qiv~lSAT~~~~~l~~~l~~~ 228 (319)
++|||-+|+...... .....+..+.. ..++.++++.|.+-....+.+.+...
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~ 142 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQA 142 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCC
Confidence 499999998332221 23333433333 35677777766655665677777654
No 182
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=97.06 E-value=0.0026 Score=64.96 Aligned_cols=42 Identities=24% Similarity=0.420 Sum_probs=28.1
Q ss_pred CCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEe
Q psy496 169 DPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILM 212 (319)
Q Consensus 169 ~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~l 212 (319)
.+.-..++++||||+|+ +..+..-.+++.+...+++.++|+.
T Consensus 114 ~P~~gr~KVIIIDEah~--LT~~A~NALLKtLEEPP~~v~FILa 155 (830)
T PRK07003 114 APVDARFKVYMIDEVHM--LTNHAFNAMLKTLEEPPPHVKFILA 155 (830)
T ss_pred ccccCCceEEEEeChhh--CCHHHHHHHHHHHHhcCCCeEEEEE
Confidence 34445789999999998 5555566667766655555555543
No 183
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.01 E-value=0.01 Score=58.07 Aligned_cols=131 Identities=16% Similarity=0.130 Sum_probs=69.7
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccccc
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKEL 147 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~ 147 (319)
.++.+.+.||||+|||+......-......+ .....++..-+.|.-+.+..+.+++.++... . .
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G-~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv-------~--~------ 318 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHG-ASKVALLTTDSYRIGGHEQLRIYGKILGVPV-------H--A------ 318 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcC-CCeEEEEeCCccchhHHHHHHHHHHHhCCCe-------e--c------
Confidence 4578999999999999988665433222222 1133455556778878777777777654221 0 0
Q ss_pred CCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhcc-ccCceEEEeccccChh---hHhh
Q psy496 148 PRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDK-RKDLKLILMSATLNAE---KFSQ 223 (319)
Q Consensus 148 ~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~-~~~~qiv~lSAT~~~~---~l~~ 223 (319)
+..+.-+...+ ..+.+.+.++||.+-+ +.........+..+... .+...++.++||.... .+.+
T Consensus 319 --------~~~~~Dl~~aL---~~L~d~d~VLIDTaGr-~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~l~~i~~ 386 (484)
T PRK06995 319 --------VKDAADLRLAL---SELRNKHIVLIDTIGM-SQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDTLNEVVQ 386 (484)
T ss_pred --------cCCchhHHHHH---HhccCCCeEEeCCCCc-ChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHHHHHHHH
Confidence 00111111111 2345678899999764 22222222222323222 1333678889998333 3444
Q ss_pred hhC
Q psy496 224 FFG 226 (319)
Q Consensus 224 ~l~ 226 (319)
.|.
T Consensus 387 ~f~ 389 (484)
T PRK06995 387 AYR 389 (484)
T ss_pred Hhc
Confidence 443
No 184
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.99 E-value=0.0013 Score=65.02 Aligned_cols=42 Identities=24% Similarity=0.392 Sum_probs=29.5
Q ss_pred CCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEe
Q psy496 169 DPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILM 212 (319)
Q Consensus 169 ~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~l 212 (319)
.+.-..++++||||+|+ +..+..-.+++.+...++...+|+.
T Consensus 114 ~p~~~~~kV~iIDE~~~--ls~~a~naLLk~LEepp~~~~fIla 155 (509)
T PRK14958 114 APTKGRFKVYLIDEVHM--LSGHSFNALLKTLEEPPSHVKFILA 155 (509)
T ss_pred ccccCCcEEEEEEChHh--cCHHHHHHHHHHHhccCCCeEEEEE
Confidence 34446789999999998 5666666777766665556566553
No 185
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.96 E-value=0.0012 Score=64.40 Aligned_cols=44 Identities=18% Similarity=0.292 Sum_probs=28.2
Q ss_pred CCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEeccccChh
Q psy496 172 LSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATLNAE 219 (319)
Q Consensus 172 l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~~~~ 219 (319)
-..++++||||+|+ +..+..-.+++.+...+. .++++-||-+..
T Consensus 119 ~g~~KV~IIDEah~--Ls~~A~NALLKtLEEPp~--~viFILaTte~~ 162 (484)
T PRK14956 119 GGKYKVYIIDEVHM--LTDQSFNALLKTLEEPPA--HIVFILATTEFH 162 (484)
T ss_pred cCCCEEEEEechhh--cCHHHHHHHHHHhhcCCC--ceEEEeecCChh
Confidence 35688999999998 666666677777655333 344443444333
No 186
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.94 E-value=0.0091 Score=57.90 Aligned_cols=55 Identities=16% Similarity=0.184 Sum_probs=35.2
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHh
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQER 126 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~ 126 (319)
..+++++|++|+|||+....... .+.. .+..+.++..-+.|..|....+.++...
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~-~L~~--~g~kV~lV~~D~~R~aa~eQL~~la~~~ 149 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLAR-YFKK--KGLKVGLVAADTYRPAAYDQLKQLAEKI 149 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH-HHHH--cCCeEEEecCCCCCHHHHHHHHHHHHHc
Confidence 45788999999999988765443 3332 2334555555566776666555565543
No 187
>PRK08727 hypothetical protein; Validated
Probab=96.90 E-value=0.0049 Score=54.78 Aligned_cols=19 Identities=21% Similarity=0.102 Sum_probs=15.5
Q ss_pred CCcEEEecCCCCCccchhh
Q psy496 69 LSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~ 87 (319)
.+.++++||+|||||...-
T Consensus 41 ~~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 41 SDWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3569999999999996553
No 188
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=96.90 E-value=0.08 Score=51.26 Aligned_cols=69 Identities=16% Similarity=0.180 Sum_probs=45.9
Q ss_pred CceEEEECchHHHHHHhc------CCC-CCCccEEEEecccccc-cchhHHHHHHHhhhcccc-----------------
Q psy496 151 RGSILYCTAGILPEVMQS------DPI-LSGVSHIVMDEIHERS-MISDFLLAILKDVTDKRK----------------- 205 (319)
Q Consensus 151 ~~~Iiv~Tpg~ll~~l~~------~~~-l~~v~~vViDEah~~~-~~~~~~~~~l~~~~~~~~----------------- 205 (319)
.++||||+|=-|...+.. +.+ |+++.++|+|.+|... -+-+.+..+++.+...+.
T Consensus 131 ~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~MQNW~Hv~~v~~~lN~~P~~~~~~DfsRVR~w~Ldg 210 (442)
T PF06862_consen 131 SSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLMQNWEHVLHVFEHLNLQPKKSHDTDFSRVRPWYLDG 210 (442)
T ss_pred cCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHHhhHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHcC
Confidence 577999999445554532 222 8999999999999611 223355555655544332
Q ss_pred ----CceEEEeccccChh
Q psy496 206 ----DLKLILMSATLNAE 219 (319)
Q Consensus 206 ----~~qiv~lSAT~~~~ 219 (319)
-+|.|++|+..+++
T Consensus 211 ~a~~~RQtii~S~~~~pe 228 (442)
T PF06862_consen 211 QAKYYRQTIIFSSFQTPE 228 (442)
T ss_pred cchheeEeEEecCCCCHH
Confidence 27899999998655
No 189
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.90 E-value=0.0014 Score=51.66 Aligned_cols=21 Identities=29% Similarity=0.290 Sum_probs=17.3
Q ss_pred CCcEEEecCCCCCccchhhHH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQF 89 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~ 89 (319)
++.++|.||+|||||+.....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l 22 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARAL 22 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHH
Confidence 467999999999999876443
No 190
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.89 E-value=0.0017 Score=63.78 Aligned_cols=47 Identities=28% Similarity=0.353 Sum_probs=31.8
Q ss_pred HHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEe
Q psy496 164 EVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILM 212 (319)
Q Consensus 164 ~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~l 212 (319)
+.....|...+++++||||+|+ +..+..-.+++.+...++...+|+.
T Consensus 106 e~~~~~P~~~~~KVvIIDEah~--Ls~~A~NaLLK~LEePp~~v~fIla 152 (491)
T PRK14964 106 ENSCYLPISSKFKVYIIDEVHM--LSNSAFNALLKTLEEPAPHVKFILA 152 (491)
T ss_pred HHHHhccccCCceEEEEeChHh--CCHHHHHHHHHHHhCCCCCeEEEEE
Confidence 3344456678899999999998 5555566667766665555555553
No 191
>KOG0387|consensus
Probab=96.88 E-value=0.011 Score=59.89 Aligned_cols=137 Identities=20% Similarity=0.167 Sum_probs=70.0
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhc---cccCCCCceEE--EEE---
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERD---EQCGRPGSSVG--YQI--- 141 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~---~~~~~~g~~vg--~~~--- 141 (319)
.-=+|.=.-|=|||.+....+ ..+...++. ...+|+++|...+. |-.+.+....- ..+ +++...+ +..
T Consensus 225 ~GGILgDeMGLGKTIQiisFL-aaL~~S~k~-~~paLIVCP~Tii~-qW~~E~~~w~p~~rv~i-lh~t~s~~r~~~~~~ 300 (923)
T KOG0387|consen 225 AGGILGDEMGLGKTIQIISFL-AALHHSGKL-TKPALIVCPATIIH-QWMKEFQTWWPPFRVFI-LHGTGSGARYDASHS 300 (923)
T ss_pred CCCeecccccCccchhHHHHH-HHHhhcccc-cCceEEEccHHHHH-HHHHHHHHhCcceEEEE-EecCCcccccccchh
Confidence 335667779999997754432 333333221 13455556976553 33333433321 111 0011110 000
Q ss_pred e-cccc----cCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccc-cccchhHHHHHHHhhhccccCceEEEeccc
Q psy496 142 R-LEKE----LPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHE-RSMISDFLLAILKDVTDKRKDLKLILMSAT 215 (319)
Q Consensus 142 ~-~~~~----~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~-~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT 215 (319)
. .-+. ......+|+++|...+. .......=...+++|+||.|. |.......++..+.- ..+.+++|.|
T Consensus 301 ~~~~~~~L~r~~~~~~~ilitty~~~r-~~~d~l~~~~W~y~ILDEGH~IrNpns~islackki~-----T~~RiILSGT 374 (923)
T KOG0387|consen 301 SHKKDKLLIRKVATDGGILITTYDGFR-IQGDDLLGILWDYVILDEGHRIRNPNSKISLACKKIR-----TVHRIILSGT 374 (923)
T ss_pred hhhhhhhheeeecccCcEEEEehhhhc-ccCcccccccccEEEecCcccccCCccHHHHHHHhcc-----ccceEEeeCc
Confidence 0 0000 01123468888887542 221111224689999999998 777777777665542 3356788999
Q ss_pred c
Q psy496 216 L 216 (319)
Q Consensus 216 ~ 216 (319)
+
T Consensus 375 P 375 (923)
T KOG0387|consen 375 P 375 (923)
T ss_pred c
Confidence 8
No 192
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.88 E-value=0.0048 Score=56.50 Aligned_cols=89 Identities=18% Similarity=0.189 Sum_probs=52.1
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccccc
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKEL 147 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~ 147 (319)
.+++++++||||+|||+.............+ +....++-.-|.|..+......++..++.. +.
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g-~~~V~li~~D~~r~~a~eql~~~~~~~~~p-------~~--------- 255 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHG-NKKVALITTDTYRIGAVEQLKTYAKILGVP-------VK--------- 255 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcC-CCeEEEEECCccchhHHHHHHHHHHHhCCc-------ee---------
Confidence 3568899999999999887654433222211 134566666677776666655565543321 10
Q ss_pred CCCCceEEEECchHHHHHHhcCCCCCCccEEEEecc
Q psy496 148 PRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEI 183 (319)
Q Consensus 148 ~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEa 183 (319)
...+++.+.+.+.. +.++++|+||.+
T Consensus 256 -------~~~~~~~l~~~l~~---~~~~d~vliDt~ 281 (282)
T TIGR03499 256 -------VARDPKELRKALDR---LRDKDLILIDTA 281 (282)
T ss_pred -------ccCCHHHHHHHHHH---ccCCCEEEEeCC
Confidence 11134445554432 346899999975
No 193
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.87 E-value=0.0034 Score=61.56 Aligned_cols=53 Identities=23% Similarity=0.170 Sum_probs=29.6
Q ss_pred HHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHH
Q psy496 34 EIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQF 89 (319)
Q Consensus 34 ~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~ 89 (319)
|++..|.....-..-|..+...+. +.+....-.+.++++||+|+|||+.+-..
T Consensus 4 l~~kyRP~~~~divGq~~i~~~L~---~~i~~~~l~~~~Lf~GPpGtGKTTlA~~l 56 (472)
T PRK14962 4 LYRKYRPKTFSEVVGQDHVKKLII---NALKKNSISHAYIFAGPRGTGKTTVARIL 56 (472)
T ss_pred hHHHHCCCCHHHccCcHHHHHHHH---HHHHcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 444444443333344555433332 23333333345799999999999877543
No 194
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.86 E-value=0.0052 Score=58.33 Aligned_cols=69 Identities=19% Similarity=0.166 Sum_probs=42.8
Q ss_pred cccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHH--HHHHHHHh
Q psy496 49 QPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAI--AERVAQER 126 (319)
Q Consensus 49 Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~--~~~~~~~~ 126 (319)
|++++..+.+. + . ...+.++.|.|+-|+|||..+-. +.+.+.. ....+++++||-.+|..+ ...+...+
T Consensus 6 Q~~~~~~v~~~--~-~-~~~~~~~fv~G~~GtGKs~l~~~-i~~~~~~----~~~~~~~~a~tg~AA~~i~~G~T~hs~f 76 (364)
T PF05970_consen 6 QRRVFDTVIEA--I-E-NEEGLNFFVTGPAGTGKSFLIKA-IIDYLRS----RGKKVLVTAPTGIAAFNIPGGRTIHSFF 76 (364)
T ss_pred HHHHHHHHHHH--H-H-ccCCcEEEEEcCCCCChhHHHHH-HHHHhcc----ccceEEEecchHHHHHhccCCcchHHhc
Confidence 66666665432 1 1 25678899999999999965422 2222222 123788888999988777 33444443
No 195
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.86 E-value=0.002 Score=65.36 Aligned_cols=43 Identities=23% Similarity=0.410 Sum_probs=29.0
Q ss_pred CCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEec
Q psy496 169 DPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMS 213 (319)
Q Consensus 169 ~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lS 213 (319)
.+.+...+++||||+|. +..+..-.+++.+...++...+|+.+
T Consensus 114 ~P~~gk~KVIIIDEad~--Ls~~A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 114 APTAGKYKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred hhhhCCcEEEEEECccc--cCHHHHHHHHHHHHhCCCCcEEEEEe
Confidence 34567889999999997 45555556666666555555666543
No 196
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.84 E-value=0.0021 Score=64.58 Aligned_cols=43 Identities=23% Similarity=0.424 Sum_probs=30.6
Q ss_pred CCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEec
Q psy496 169 DPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMS 213 (319)
Q Consensus 169 ~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lS 213 (319)
.+....++++||||+|+ +.....-.+++.+...+++.++|+.+
T Consensus 119 ~P~~gr~KViIIDEah~--Ls~~AaNALLKTLEEPP~~v~FILaT 161 (700)
T PRK12323 119 APTAGRFKVYMIDEVHM--LTNHAFNAMLKTLEEPPEHVKFILAT 161 (700)
T ss_pred chhcCCceEEEEEChHh--cCHHHHHHHHHhhccCCCCceEEEEe
Confidence 34456789999999998 56666667777766655566666654
No 197
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=96.84 E-value=0.0017 Score=66.47 Aligned_cols=67 Identities=16% Similarity=0.027 Sum_probs=49.3
Q ss_pred ccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHH
Q psy496 46 MVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 46 ~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
.+.|...+..+. ....++..+++-||||+|||.+++.|.+......+ ..+++..+|+.+-.|+.++.
T Consensus 17 r~~Q~~~~~~v~------~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~----~~viist~t~~lq~q~~~~~ 83 (654)
T COG1199 17 RPEQREMAEAVA------EALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG----KKVIISTRTKALQEQLLEED 83 (654)
T ss_pred CHHHHHHHHHHH------HHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC----CcEEEECCCHHHHHHHHHhh
Confidence 356777765554 23445566999999999999999999987655443 37888889998888876543
No 198
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.81 E-value=0.0052 Score=63.90 Aligned_cols=48 Identities=23% Similarity=0.406 Sum_probs=33.0
Q ss_pred CCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEeccccChhhH
Q psy496 170 PILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATLNAEKF 221 (319)
Q Consensus 170 ~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~~~~~l 221 (319)
+.-...+++||||+|+ +..+..-.+++.+...++..++|+. |-+...+
T Consensus 115 P~~gk~KViIIDEAh~--LT~eAqNALLKtLEEPP~~vrFILa--TTe~~kL 162 (944)
T PRK14949 115 PSRGRFKVYLIDEVHM--LSRSSFNALLKTLEEPPEHVKFLLA--TTDPQKL 162 (944)
T ss_pred hhcCCcEEEEEechHh--cCHHHHHHHHHHHhccCCCeEEEEE--CCCchhc
Confidence 3345789999999998 6677777778877766566666654 5544433
No 199
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.81 E-value=0.0026 Score=60.38 Aligned_cols=48 Identities=23% Similarity=0.346 Sum_probs=29.9
Q ss_pred HHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEe
Q psy496 163 PEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILM 212 (319)
Q Consensus 163 l~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~l 212 (319)
.+.+...+.....+++||||+|. +..+....+++.+...++..++|+.
T Consensus 108 ~~~~~~~p~~~~~kviIIDEa~~--l~~~a~naLLk~lEe~~~~~~fIl~ 155 (363)
T PRK14961 108 LDNIYYSPSKSRFKVYLIDEVHM--LSRHSFNALLKTLEEPPQHIKFILA 155 (363)
T ss_pred HHHHhcCcccCCceEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 33333345556789999999998 4444445566666555555556554
No 200
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.80 E-value=0.011 Score=53.78 Aligned_cols=124 Identities=17% Similarity=0.193 Sum_probs=65.1
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccccc
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKEL 147 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~ 147 (319)
..+.++++||+|+|||+........ +.. .+....++-.-+.|..+....+.+.+..+..+ .......
T Consensus 71 ~~~vi~l~G~~G~GKTTt~akLA~~-l~~--~g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~----------~~~~~~~ 137 (272)
T TIGR00064 71 KPNVILFVGVNGVGKTTTIAKLANK-LKK--QGKSVLLAAGDTFRAAAIEQLEEWAKRLGVDV----------IKQKEGA 137 (272)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH-HHh--cCCEEEEEeCCCCCHHHHHHHHHHHHhCCeEE----------EeCCCCC
Confidence 3467888999999999877655433 222 22334445545777777666666666543111 0000000
Q ss_pred CCCCceEEEECc-hHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhc-------cccCceEEEecccc
Q psy496 148 PRKRGSILYCTA-GILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTD-------KRKDLKLILMSATL 216 (319)
Q Consensus 148 ~~~~~~Iiv~Tp-g~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~-------~~~~~qiv~lSAT~ 216 (319)
-| ....+.+.. ....+++++|||=+-.... ...+...++.+.. ..++-.++.+|||.
T Consensus 138 ----------dp~~~~~~~l~~-~~~~~~D~ViIDT~G~~~~-d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~ 202 (272)
T TIGR00064 138 ----------DPAAVAFDAIQK-AKARNIDVVLIDTAGRLQN-KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATT 202 (272)
T ss_pred ----------CHHHHHHHHHHH-HHHCCCCEEEEeCCCCCcc-hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCC
Confidence 11 111222211 1125789999999986222 2222222222221 22566788899998
No 201
>PRK10867 signal recognition particle protein; Provisional
Probab=96.79 E-value=0.013 Score=56.81 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=37.6
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhc
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERD 127 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~ 127 (319)
...++++|++|||||+........ +... .+....++..-+.|..|....+.+++..+
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~-l~~~-~G~kV~lV~~D~~R~aa~eQL~~~a~~~g 156 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKY-LKKK-KKKKVLLVAADVYRPAAIEQLKTLGEQIG 156 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHH-HHHh-cCCcEEEEEccccchHHHHHHHHHHhhcC
Confidence 356888999999999887655443 2222 13345666667888887766666665543
No 202
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=96.78 E-value=0.0058 Score=57.69 Aligned_cols=50 Identities=18% Similarity=0.191 Sum_probs=33.6
Q ss_pred HHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecc
Q psy496 163 PEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSA 214 (319)
Q Consensus 163 l~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSA 214 (319)
.+.+...+.-...+++||||+|. +.......+++.+...+++..++++|.
T Consensus 130 ~~~l~~~~~~g~~rVviIDeAd~--l~~~aanaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 130 GHFLSQTSGDGNWRIVIIDPADD--MNRNAANAILKTLEEPPARALFILISH 179 (351)
T ss_pred HHHhhhccccCCceEEEEEchhh--cCHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 34443344456789999999998 666666677777766555555666653
No 203
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.77 E-value=0.011 Score=56.91 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=34.0
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHH
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQE 125 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~ 125 (319)
..++++|++|||||+........ +.. .+....++..-|.|..|....+.+++.
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~~-l~~--~G~kV~lV~~D~~R~aA~eQLk~~a~~ 153 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAYY-YQR--KGFKPCLVCADTFRAGAFDQLKQNATK 153 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHH--CCCCEEEEcCcccchhHHHHHHHHhhc
Confidence 56889999999999876544332 222 233445555567787777666655554
No 204
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=96.76 E-value=0.0027 Score=66.25 Aligned_cols=100 Identities=19% Similarity=0.192 Sum_probs=60.7
Q ss_pred CCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc---ccCCCCce
Q psy496 77 STGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK---ELPRKRGS 153 (319)
Q Consensus 77 pTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~---~~~~~~~~ 153 (319)
.||=|||+++.+|++-..+.+. .+.|+.+.. =||..=++.+...+... |..||....... ....-.++
T Consensus 159 ~TGEGKTLvatlp~yLnAL~G~---gVHvVTvND--YLA~RDaewm~p~y~fl----GLtVg~i~~~~~~~~Rr~aY~~D 229 (1025)
T PRK12900 159 ATGEGKTLVSTLPTFLNALTGR---GVHVVTVND--YLAQRDKEWMNPVFEFH----GLSVGVILNTMRPEERREQYLCD 229 (1025)
T ss_pred CCCCCcchHhHHHHHHHHHcCC---CcEEEeech--HhhhhhHHHHHHHHHHh----CCeeeeeCCCCCHHHHHHhCCCc
Confidence 3999999999999864444332 456666333 35544444444433322 888885533111 11113678
Q ss_pred EEEECc-----hHHHHHHhcCC---CCCCccEEEEecccc
Q psy496 154 ILYCTA-----GILPEVMQSDP---ILSGVSHIVMDEIHE 185 (319)
Q Consensus 154 Iiv~Tp-----g~ll~~l~~~~---~l~~v~~vViDEah~ 185 (319)
|+++|. +.|.+.+..++ ....+.+.||||+|.
T Consensus 230 ItYgTn~EfGFDYLRDnma~~~~~~vqR~~~faIVDEvDS 269 (1025)
T PRK12900 230 ITYGTNNEFGFDYLRDNMAGTPEEMVQRDFYFAIVDEVDS 269 (1025)
T ss_pred ceecCCCccccccchhccccchhhhhccCCceEEEechhh
Confidence 999998 45555553333 257789999999996
No 205
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.72 E-value=0.0049 Score=62.18 Aligned_cols=48 Identities=23% Similarity=0.364 Sum_probs=30.8
Q ss_pred HHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEe
Q psy496 163 PEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILM 212 (319)
Q Consensus 163 l~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~l 212 (319)
++.....+....++++||||+|+ +..+..-.+++.+...++...+|+.
T Consensus 113 i~~~~~~p~~g~~KV~IIDEvh~--Ls~~a~NaLLKtLEEPP~~~~fIL~ 160 (618)
T PRK14951 113 LEQAVYKPVQGRFKVFMIDEVHM--LTNTAFNAMLKTLEEPPEYLKFVLA 160 (618)
T ss_pred HHHHHhCcccCCceEEEEEChhh--CCHHHHHHHHHhcccCCCCeEEEEE
Confidence 33334455567799999999998 5566566666666554445455543
No 206
>KOG0385|consensus
Probab=96.69 E-value=0.013 Score=59.14 Aligned_cols=137 Identities=18% Similarity=0.068 Sum_probs=69.9
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEec----
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRL---- 143 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~---- 143 (319)
++-|.++.-+-|=|||++-.-. +..+... ++..+.-++++|.--|.+ ..+.++++.-... ..+-+....
T Consensus 185 ngingILaDEMGLGKTlQtIs~-l~yl~~~-~~~~GPfLVi~P~StL~N-W~~Ef~rf~P~l~----~~~~~Gdk~eR~~ 257 (971)
T KOG0385|consen 185 NGINGILADEMGLGKTLQTISL-LGYLKGR-KGIPGPFLVIAPKSTLDN-WMNEFKRFTPSLN----VVVYHGDKEERAA 257 (971)
T ss_pred cCcccEeehhcccchHHHHHHH-HHHHHHh-cCCCCCeEEEeeHhhHHH-HHHHHHHhCCCcc----eEEEeCCHHHHHH
Confidence 4556888899999999765332 2222221 111223444449766533 2333444422110 001000110
Q ss_pred --ccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 144 --EKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 144 --~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
.+.....+-+|+++|.++.++--.-- .--..+++||||||+.--....+...++.+.. + ..++++.|+
T Consensus 258 ~~r~~~~~~~fdV~iTsYEi~i~dk~~l-k~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~~---~-nrLLlTGTP 327 (971)
T KOG0385|consen 258 LRRDIMLPGRFDVCITSYEIAIKDKSFL-KKFNWRYLVIDEAHRIKNEKSKLSKILREFKT---D-NRLLLTGTP 327 (971)
T ss_pred HHHHhhccCCCceEeehHHHHHhhHHHH-hcCCceEEEechhhhhcchhhHHHHHHHHhcc---c-ceeEeeCCc
Confidence 01111235679999999887652110 11368899999999732222233344444432 2 356778887
No 207
>KOG4439|consensus
Probab=96.68 E-value=0.0029 Score=63.18 Aligned_cols=159 Identities=18% Similarity=0.193 Sum_probs=83.5
Q ss_pred CccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHH----hCCCCcc-EEEEecccHHHH
Q psy496 41 SECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIA----RNRGSEC-CIMVTQPRRISA 115 (319)
Q Consensus 41 ~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~----~~~~~~~-~vl~~~Ptr~la 115 (319)
.....+|.|..++.-+.-. .++.++--++.-.-|=|||+..+-.+++.-.. .+++... .-|+++|.+.+
T Consensus 322 ~~v~LmpHQkaal~Wl~wR-----E~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaSli- 395 (901)
T KOG4439|consen 322 LKVELMPHQKAALRWLLWR-----ESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPASLI- 395 (901)
T ss_pred ceeecchhhhhhhhhhccc-----ccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHHHH-
Confidence 3445677887776544321 24455566778889999999776666644322 1222222 25555597554
Q ss_pred HHHHHHHHHHhccccCCCCceEEEEEecccc------cCCCCceEEEECchHHHH----HH---hcCCCCCC--ccEEEE
Q psy496 116 IAIAERVAQERDEQCGRPGSSVGYQIRLEKE------LPRKRGSILYCTAGILPE----VM---QSDPILSG--VSHIVM 180 (319)
Q Consensus 116 ~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~------~~~~~~~Iiv~Tpg~ll~----~l---~~~~~l~~--v~~vVi 180 (319)
.|....+...+... ...|- +-++.. ....+.+|+++|...+-+ .. .+...|.+ ..-||+
T Consensus 396 ~qW~~Ev~~rl~~n----~LsV~--~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVIL 469 (901)
T KOG4439|consen 396 HQWEAEVARRLEQN----ALSVY--LYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVIL 469 (901)
T ss_pred HHHHHHHHHHHhhc----ceEEE--EecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhh
Confidence 45544454443322 11111 111111 111356899999876654 22 11222444 456899
Q ss_pred ecccc-cccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 181 DEIHE-RSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 181 DEah~-~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
||||. +........++.+. ... -..++|+|+
T Consensus 470 DEAH~IrN~~tq~S~AVC~L----~a~-~RWclTGTP 501 (901)
T KOG4439|consen 470 DEAHNIRNSNTQCSKAVCKL----SAK-SRWCLTGTP 501 (901)
T ss_pred hhhhhhcccchhHHHHHHHH----hhc-ceeecccCc
Confidence 99996 33333333333222 112 357889998
No 208
>PLN03025 replication factor C subunit; Provisional
Probab=96.66 E-value=0.014 Score=54.26 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=17.2
Q ss_pred CCCCcEEEecCCCCCccchhhH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l 88 (319)
.+..+++++||+|+|||+.+..
T Consensus 32 ~~~~~lll~Gp~G~GKTtla~~ 53 (319)
T PLN03025 32 GNMPNLILSGPPGTGKTTSILA 53 (319)
T ss_pred CCCceEEEECCCCCCHHHHHHH
Confidence 3445699999999999977644
No 209
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.65 E-value=0.015 Score=60.37 Aligned_cols=106 Identities=19% Similarity=0.195 Sum_probs=59.8
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccC
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELP 148 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~ 148 (319)
++.++|.|++|+|||+..-. +.+.+...+ ..|+.+.||--.|..+.+ .. |...
T Consensus 368 ~~~~il~G~aGTGKTtll~~-i~~~~~~~g----~~V~~~ApTg~Aa~~L~~----~~-------g~~a----------- 420 (744)
T TIGR02768 368 GDIAVVVGRAGTGKSTMLKA-AREAWEAAG----YRVIGAALSGKAAEGLQA----ES-------GIES----------- 420 (744)
T ss_pred CCEEEEEecCCCCHHHHHHH-HHHHHHhCC----CeEEEEeCcHHHHHHHHh----cc-------CCce-----------
Confidence 46789999999999976533 333333322 367788899776655542 11 1100
Q ss_pred CCCceEEEECchHHHHHH-hcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEec
Q psy496 149 RKRGSILYCTAGILPEVM-QSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMS 213 (319)
Q Consensus 149 ~~~~~Iiv~Tpg~ll~~l-~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lS 213 (319)
.|-..++..+ .....+...++|||||+-+ +....+..+++.... ...++|++.
T Consensus 421 --------~Ti~~~~~~~~~~~~~~~~~~llIvDEasM--v~~~~~~~Ll~~~~~--~~~kliLVG 474 (744)
T TIGR02768 421 --------RTLASLEYAWANGRDLLSDKDVLVIDEAGM--VGSRQMARVLKEAEE--AGAKVVLVG 474 (744)
T ss_pred --------eeHHHHHhhhccCcccCCCCcEEEEECccc--CCHHHHHHHHHHHHh--cCCEEEEEC
Confidence 0112222222 2223367889999999998 444444445543332 245677665
No 210
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.64 E-value=0.0079 Score=59.45 Aligned_cols=43 Identities=19% Similarity=0.322 Sum_probs=27.4
Q ss_pred HHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCc
Q psy496 163 PEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDL 207 (319)
Q Consensus 163 l~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~ 207 (319)
++.....+...+.+++||||+|+ +.......+++.+...++..
T Consensus 117 ie~a~~~P~~~~~KVvIIDEa~~--Ls~~a~naLLk~LEepp~~~ 159 (507)
T PRK06645 117 IESAEYKPLQGKHKIFIIDEVHM--LSKGAFNALLKTLEEPPPHI 159 (507)
T ss_pred HHHHHhccccCCcEEEEEEChhh--cCHHHHHHHHHHHhhcCCCE
Confidence 33344456678899999999998 44455555555555444443
No 211
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.63 E-value=0.0035 Score=53.40 Aligned_cols=46 Identities=17% Similarity=0.175 Sum_probs=25.8
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIA 117 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q 117 (319)
..+++++++.|++|+|||..+.. +...+...+ ..++++ +..+|...
T Consensus 44 ~~~~~~l~l~G~~G~GKThLa~a-i~~~~~~~g----~~v~f~-~~~~L~~~ 89 (178)
T PF01695_consen 44 IENGENLILYGPPGTGKTHLAVA-IANEAIRKG----YSVLFI-TASDLLDE 89 (178)
T ss_dssp -SC--EEEEEESTTSSHHHHHHH-HHHHHHHTT------EEEE-EHHHHHHH
T ss_pred cccCeEEEEEhhHhHHHHHHHHH-HHHHhccCC----cceeEe-ecCceecc
Confidence 45678999999999999976544 334444433 244443 44444433
No 212
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.60 E-value=0.0035 Score=63.21 Aligned_cols=42 Identities=19% Similarity=0.389 Sum_probs=27.8
Q ss_pred CCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEe
Q psy496 169 DPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILM 212 (319)
Q Consensus 169 ~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~l 212 (319)
.+....++++||||+|+ +.....-.+++.+...++...+|+.
T Consensus 113 ~P~~gk~KV~IIDEVh~--LS~~A~NALLKtLEEPP~~v~FILa 154 (702)
T PRK14960 113 APTQGRFKVYLIDEVHM--LSTHSFNALLKTLEEPPEHVKFLFA 154 (702)
T ss_pred hhhcCCcEEEEEechHh--cCHHHHHHHHHHHhcCCCCcEEEEE
Confidence 33446789999999998 5555556666666555555555553
No 213
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.59 E-value=0.016 Score=58.54 Aligned_cols=50 Identities=20% Similarity=0.385 Sum_probs=33.3
Q ss_pred HHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEec
Q psy496 162 LPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMS 213 (319)
Q Consensus 162 ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lS 213 (319)
+++.+...+.....+++||||+|+ +.....-.+++.+...++...+|+.+
T Consensus 120 Iie~~~~~P~~a~~KVvIIDEad~--Ls~~a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 120 IIESVRYRPVSARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred HHHHHHhchhcCCcEEEEEEChHh--CCHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 344445556678899999999998 45555556666666555566666543
No 214
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.56 E-value=0.0081 Score=60.87 Aligned_cols=50 Identities=22% Similarity=0.381 Sum_probs=32.9
Q ss_pred cCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEeccccChhhH
Q psy496 168 SDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATLNAEKF 221 (319)
Q Consensus 168 ~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~~~~~l 221 (319)
..+.-..++++||||+|+ +..+..-.+++.+...++...+|+. |-+...+
T Consensus 113 ~~p~~g~~KV~IIDEah~--Ls~~a~NALLKtLEEPp~~v~FIL~--Tt~~~kL 162 (647)
T PRK07994 113 YAPARGRFKVYLIDEVHM--LSRHSFNALLKTLEEPPEHVKFLLA--TTDPQKL 162 (647)
T ss_pred hhhhcCCCEEEEEechHh--CCHHHHHHHHHHHHcCCCCeEEEEe--cCCcccc
Confidence 334456789999999998 6666777777777665555555554 4444433
No 215
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.56 E-value=0.019 Score=55.56 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=36.2
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhc
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERD 127 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~ 127 (319)
..++++|++|||||+........ +.. ..+....++..-+.|..|.+..+.++...+
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~-l~~-~~g~kV~lV~~D~~R~~a~~QL~~~a~~~g 155 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYY-LKK-KQGKKVLLVACDLYRPAAIEQLKVLGQQVG 155 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHH-HHH-hCCCeEEEEeccccchHHHHHHHHHHHhcC
Confidence 46888999999999887665443 221 123345566666788777666666665443
No 216
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.54 E-value=0.0082 Score=56.12 Aligned_cols=45 Identities=18% Similarity=0.180 Sum_probs=27.3
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAI 118 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~ 118 (319)
.+.+++++|+||+|||... ..+...+...+ ..|+++ +..++...+
T Consensus 182 ~~~~Lll~G~~GtGKThLa-~aIa~~l~~~g----~~V~y~-t~~~l~~~l 226 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLS-NCIAKELLDRG----KSVIYR-TADELIEIL 226 (329)
T ss_pred cCCcEEEECCCCCcHHHHH-HHHHHHHHHCC----CeEEEE-EHHHHHHHH
Confidence 4588999999999999644 33444444433 256553 334443333
No 217
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.54 E-value=0.0044 Score=61.68 Aligned_cols=49 Identities=22% Similarity=0.322 Sum_probs=32.0
Q ss_pred HHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEe
Q psy496 162 LPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILM 212 (319)
Q Consensus 162 ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~l 212 (319)
+++.+...+...+.+++||||+|+ +..+..-.+++.+...++...+|+.
T Consensus 107 ii~~~~~~p~~g~~kViIIDEa~~--ls~~a~naLLK~LEepp~~v~fIL~ 155 (546)
T PRK14957 107 ILDNIQYMPSQGRYKVYLIDEVHM--LSKQSFNALLKTLEEPPEYVKFILA 155 (546)
T ss_pred HHHHHHhhhhcCCcEEEEEechhh--ccHHHHHHHHHHHhcCCCCceEEEE
Confidence 344444445567889999999998 5555666666666655555555553
No 218
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=96.51 E-value=0.018 Score=54.72 Aligned_cols=62 Identities=18% Similarity=0.133 Sum_probs=39.5
Q ss_pred eEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 153 SILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 153 ~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
.|.|-.--.+.+.+...+.-...+++||||+|. ++....-.+++.+...++...+|++|...
T Consensus 120 ~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~--m~~~aanaLLK~LEepp~~~~~IL~t~~~ 181 (365)
T PRK07471 120 VITVDEVRELISFFGLTAAEGGWRVVIVDTADE--MNANAANALLKVLEEPPARSLFLLVSHAP 181 (365)
T ss_pred cccHHHHHHHHHHhCcCcccCCCEEEEEechHh--cCHHHHHHHHHHHhcCCCCeEEEEEECCc
Confidence 354434333444444445567889999999998 66666677777776655555566655443
No 219
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.51 E-value=0.032 Score=51.99 Aligned_cols=124 Identities=16% Similarity=0.168 Sum_probs=63.2
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccccc
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKEL 147 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~ 147 (319)
.++.+++.||+|+|||+........ +.. .+....++-.-+.|..|.+....++...+.. +- ......
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~-l~~--~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~-------~~---~~~~~~ 179 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHK-YKA--QGKKVLLAAGDTFRAAAIEQLQVWGERVGVP-------VI---AQKEGA 179 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH-HHh--cCCeEEEEecCccchhhHHHHHHHHHHcCce-------EE---EeCCCC
Confidence 4578889999999999877544322 222 2233444444466776655555555543311 10 000000
Q ss_pred CCCCceEEEECc-hHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhh-------ccccCceEEEecccc
Q psy496 148 PRKRGSILYCTA-GILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVT-------DKRKDLKLILMSATL 216 (319)
Q Consensus 148 ~~~~~~Iiv~Tp-g~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~-------~~~~~~qiv~lSAT~ 216 (319)
.| ....+.+.. ....++++||||=+-.. ...+.+...++.+. ...|.-.++.++||.
T Consensus 180 ----------dpa~~v~~~l~~-~~~~~~D~ViIDTaGr~-~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~ 244 (318)
T PRK10416 180 ----------DPASVAFDAIQA-AKARGIDVLIIDTAGRL-HNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATT 244 (318)
T ss_pred ----------CHHHHHHHHHHH-HHhCCCCEEEEeCCCCC-cCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCC
Confidence 11 111222211 11267899999999852 22222222222221 233555688899998
No 220
>KOG0389|consensus
Probab=96.47 E-value=0.0072 Score=61.14 Aligned_cols=141 Identities=17% Similarity=0.148 Sum_probs=72.7
Q ss_pred EEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccc-c-CCCCceEE-EEEecccccC
Q psy496 72 SIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQ-C-GRPGSSVG-YQIRLEKELP 148 (319)
Q Consensus 72 vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~-~-~~~g~~vg-~~~~~~~~~~ 148 (319)
-|+.-+-|=|||.++... +..+...+..+.-+|+| |.--|- ...+.++++.-.. + .|+|.... -.++..-...
T Consensus 421 gILADEMGLGKTiQvIaF-layLkq~g~~gpHLVVv--PsSTle-NWlrEf~kwCPsl~Ve~YyGSq~ER~~lR~~i~~~ 496 (941)
T KOG0389|consen 421 GILADEMGLGKTIQVIAF-LAYLKQIGNPGPHLVVV--PSSTLE-NWLREFAKWCPSLKVEPYYGSQDERRELRERIKKN 496 (941)
T ss_pred ceehhhccCcchhHHHHH-HHHHHHcCCCCCcEEEe--cchhHH-HHHHHHHHhCCceEEEeccCcHHHHHHHHHHHhcc
Confidence 477778999999765332 33333333322334555 875542 2333344432111 1 12232210 0011111111
Q ss_pred CCCceEEEECchHHH-----HHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc---Chhh
Q psy496 149 RKRGSILYCTAGILP-----EVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL---NAEK 220 (319)
Q Consensus 149 ~~~~~Iiv~Tpg~ll-----~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~---~~~~ 220 (319)
....+++++|..... +.+.. -.+++++|.||.|. ....--.+.+.+...+.+. .+++++|+ |..+
T Consensus 497 ~~~ydVllTTY~la~~~kdDRsflk---~~~~n~viyDEgHm---LKN~~SeRy~~LM~I~An~-RlLLTGTPLQNNL~E 569 (941)
T KOG0389|consen 497 KDDYDVLLTTYNLAASSKDDRSFLK---NQKFNYVIYDEGHM---LKNRTSERYKHLMSINANF-RLLLTGTPLQNNLKE 569 (941)
T ss_pred CCCccEEEEEeecccCChHHHHHHH---hccccEEEecchhh---hhccchHHHHHhccccccc-eEEeeCCcccccHHH
Confidence 235679999986542 11111 14688999999996 2233345666677666664 46778887 5555
Q ss_pred Hhh
Q psy496 221 FSQ 223 (319)
Q Consensus 221 l~~ 223 (319)
+-.
T Consensus 570 LiS 572 (941)
T KOG0389|consen 570 LIS 572 (941)
T ss_pred HHH
Confidence 444
No 221
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.46 E-value=0.005 Score=60.88 Aligned_cols=44 Identities=25% Similarity=0.395 Sum_probs=28.2
Q ss_pred HhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEE
Q psy496 166 MQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLIL 211 (319)
Q Consensus 166 l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~ 211 (319)
+...+.+...+++||||+|. +..+.+..+++.+...++...+|+
T Consensus 108 ~~~~p~~~~~kVVIIDEad~--ls~~a~naLLk~LEep~~~t~~Il 151 (504)
T PRK14963 108 VLLAPLRGGRKVYILDEAHM--MSKSAFNALLKTLEEPPEHVIFIL 151 (504)
T ss_pred HhhccccCCCeEEEEECccc--cCHHHHHHHHHHHHhCCCCEEEEE
Confidence 33345567899999999997 445555566666655444444444
No 222
>PRK05642 DNA replication initiation factor; Validated
Probab=96.46 E-value=0.018 Score=51.11 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=14.5
Q ss_pred CcEEEecCCCCCccchh
Q psy496 70 SPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~ 86 (319)
..++|+||+|+|||...
T Consensus 46 ~~l~l~G~~G~GKTHLl 62 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLL 62 (234)
T ss_pred CeEEEECCCCCCHHHHH
Confidence 56899999999999663
No 223
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.45 E-value=0.0062 Score=62.87 Aligned_cols=62 Identities=15% Similarity=0.096 Sum_probs=46.1
Q ss_pred HhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 61 KCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 61 ~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
++..+..++++.++-||||+|||++.+.+.+......+ ...+|++.+.|..=..|..+.+++
T Consensus 21 ~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~--~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 21 DLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKP--EVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred HHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhcc--ccccEEEEcccchHHHHHHHHHHh
Confidence 44455667889999999999999999999987654322 134899988887766676666665
No 224
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.45 E-value=0.011 Score=59.29 Aligned_cols=49 Identities=18% Similarity=0.241 Sum_probs=30.5
Q ss_pred HHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEec
Q psy496 163 PEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMS 213 (319)
Q Consensus 163 l~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lS 213 (319)
.+.+...+...+.+++||||+|. +..+..-.+++.+...++...+|+++
T Consensus 108 i~~~~~~P~~~~~KVIIIDEad~--Lt~~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 108 IDNINYLPTTFKYKVYIIDEAHM--LSTSAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred HHHHHhchhhCCcEEEEEechHh--CCHHHHHHHHHHHHhCCCcEEEEEEC
Confidence 34444455567789999999997 45555555556555544455555544
No 225
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.42 E-value=0.1 Score=52.97 Aligned_cols=144 Identities=16% Similarity=0.155 Sum_probs=81.7
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccc-----cCCCCceEEEE----
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQ-----CGRPGSSVGYQ---- 140 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~-----~~~~g~~vg~~---- 140 (319)
.-.++.+|=|.|||.+..+.+...+... ..+|++++|...-+.++.+++...+... ....+..+...
T Consensus 188 ~~tV~taPRqrGKS~iVgi~l~~La~f~----Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp~~~~iv~vkgg~E 263 (752)
T PHA03333 188 CYTAATVPRRCGKTTIMAIILAAMISFL----EIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFPEEFKIVTLKGTDE 263 (752)
T ss_pred cceEEEeccCCCcHHHHHHHHHHHHHhc----CCeEEEECCChhhHHHHHHHHHHHHHHhccccccCCCceEEEeeCCee
Confidence 3467789999999998876665433222 2589999999999999988877765421 10001111000
Q ss_pred -EecccccCC--CCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEeccccC
Q psy496 141 -IRLEKELPR--KRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATLN 217 (319)
Q Consensus 141 -~~~~~~~~~--~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~~ 217 (319)
+........ ..+.|.+.+-+ .+...-.+++++|+|||.. +..+.+..++-.+... +.+++++|-+-+
T Consensus 264 ~I~f~~p~gak~G~sti~F~Ars------~~s~RG~~~DLLIVDEAAf--I~~~~l~aIlP~l~~~--~~k~IiISS~~~ 333 (752)
T PHA03333 264 NLEYISDPAAKEGKTTAHFLASS------PNAARGQNPDLVIVDEAAF--VNPGALLSVLPLMAVK--GTKQIHISSPVD 333 (752)
T ss_pred EEEEecCcccccCcceeEEeccc------CCCcCCCCCCEEEEECccc--CCHHHHHHHHHHHccC--CCceEEEeCCCC
Confidence 000000000 00233333222 0111113578999999997 5556666665555442 446778888876
Q ss_pred hhhHhhhhCC
Q psy496 218 AEKFSQFFGG 227 (319)
Q Consensus 218 ~~~l~~~l~~ 227 (319)
...+-.++.+
T Consensus 334 ~~s~tS~L~n 343 (752)
T PHA03333 334 ADSWISRVGE 343 (752)
T ss_pred cchHHHHhhh
Confidence 6666666654
No 226
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=96.40 E-value=0.0062 Score=62.00 Aligned_cols=50 Identities=28% Similarity=0.348 Sum_probs=39.2
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
..++|.||+|||||....-.+.+.+ ..+ .+|+++.||...+.++.+++..
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~~-~~g----~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQLV-KRG----LRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHH-HcC----CCEEEEcCcHHHHHHHHHHHHh
Confidence 6789999999999987755544433 322 2789999999999999988876
No 227
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=96.40 E-value=0.014 Score=57.87 Aligned_cols=43 Identities=23% Similarity=0.461 Sum_probs=31.1
Q ss_pred CCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEec
Q psy496 169 DPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMS 213 (319)
Q Consensus 169 ~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lS 213 (319)
.+.....+++||||+|+ +..+..-.+++.+...++..++|+.+
T Consensus 112 ~P~~~~~KVvIIDEad~--Lt~~A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 112 KPSMARFKIFIIDEVHM--LTKEAFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CcccCCeEEEEEECccc--CCHHHHHHHHHHHhhcCCceEEEEEE
Confidence 45567899999999998 56666666777776665566666544
No 228
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.38 E-value=0.018 Score=48.13 Aligned_cols=51 Identities=20% Similarity=0.318 Sum_probs=35.8
Q ss_pred HHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 164 EVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 164 ~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
+.+...+.-...+++||||+|. +..+..-++++.+...+.+..+++++-..
T Consensus 92 ~~~~~~~~~~~~KviiI~~ad~--l~~~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 92 EFLSLSPSEGKYKVIIIDEADK--LTEEAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp HHCTSS-TTSSSEEEEEETGGG--S-HHHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred HHHHHHHhcCCceEEEeehHhh--hhHHHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 3333344456899999999998 77778888888887777777777766544
No 229
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=96.37 E-value=0.008 Score=56.72 Aligned_cols=19 Identities=32% Similarity=0.457 Sum_probs=16.1
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
.+.+++||+|+|||+.+.+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 5789999999999987644
No 230
>PRK06893 DNA replication initiation factor; Validated
Probab=96.37 E-value=0.018 Score=50.91 Aligned_cols=48 Identities=13% Similarity=0.288 Sum_probs=26.6
Q ss_pred CCccEEEEecccccccchh---HHHHHHHhhhccccCceEEEeccccChhhHh
Q psy496 173 SGVSHIVMDEIHERSMISD---FLLAILKDVTDKRKDLKLILMSATLNAEKFS 222 (319)
Q Consensus 173 ~~v~~vViDEah~~~~~~~---~~~~~l~~~~~~~~~~qiv~lSAT~~~~~l~ 222 (319)
.+.+++||||+|......+ .+...+...... ..+++++|++..+..+.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~--~~~illits~~~p~~l~ 140 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQ--GKTLLLISADCSPHALS 140 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHc--CCcEEEEeCCCChHHcc
Confidence 4678999999997322222 233333333221 33566777877554443
No 231
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.36 E-value=0.02 Score=50.08 Aligned_cols=23 Identities=13% Similarity=0.140 Sum_probs=18.6
Q ss_pred CCCCCcEEEecCCCCCccchhhH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l 88 (319)
...+.++++.||+|||||...-.
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~ 57 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQA 57 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHH
Confidence 34567899999999999977644
No 232
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.015 Score=58.78 Aligned_cols=46 Identities=26% Similarity=0.376 Sum_probs=28.9
Q ss_pred HHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEE
Q psy496 164 EVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLIL 211 (319)
Q Consensus 164 ~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~ 211 (319)
+.+...+.+.+.+++||||+|. +..+..-.+++.+...++...+|+
T Consensus 110 ~~~~~~p~~~~~kVvIIDEa~~--L~~~a~naLLk~LEepp~~tv~Il 155 (585)
T PRK14950 110 ERVQFRPALARYKVYIIDEVHM--LSTAAFNALLKTLEEPPPHAIFIL 155 (585)
T ss_pred HHHhhCcccCCeEEEEEeChHh--CCHHHHHHHHHHHhcCCCCeEEEE
Confidence 3344455678899999999997 455555555666555444443443
No 233
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.36 E-value=0.0071 Score=60.22 Aligned_cols=48 Identities=23% Similarity=0.374 Sum_probs=31.7
Q ss_pred HHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEec
Q psy496 164 EVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMS 213 (319)
Q Consensus 164 ~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lS 213 (319)
+.....+.....+++||||+|+ +..+..-.+++.+...++...+|+.+
T Consensus 109 ~~~~~~p~~~~~kVvIIDEad~--ls~~a~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 109 DNAQYAPTRGRFKVYIIDEVHM--LSKSAFNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred HHHhhCcccCCceEEEEcCccc--CCHHHHHHHHHHHhCCCCCEEEEEEe
Confidence 3334445567899999999998 45555556667666655566666543
No 234
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=96.35 E-value=0.027 Score=53.96 Aligned_cols=133 Identities=9% Similarity=0.102 Sum_probs=72.0
Q ss_pred cEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHH-HHHHHHHHHHHHhccccCCCCceEEEEEecc--ccc
Q psy496 71 PSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRI-SAIAIAERVAQERDEQCGRPGSSVGYQIRLE--KEL 147 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~-la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~--~~~ 147 (319)
..++.|+.|||||.+...-++..+.... ...+++++.++.. +...+.+.+...+... |....+..... ...
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~--~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~----g~~~~~~~~~~~~~i~ 76 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINK--KQQNILAARKVQNSIRDSVFKDIENLLSIE----GINYEFKKSKSSMEIK 76 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcC--CCcEEEEEehhhhHHHHHHHHHHHHHHHHc----CChhheeecCCccEEE
Confidence 4678999999999998888777666541 2368888878766 5666666666544322 21111111000 000
Q ss_pred CCC-CceEEEECc-hHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 148 PRK-RGSILYCTA-GILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 148 ~~~-~~~Iiv~Tp-g~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
... +..|++..- +.-- .++ ....+.++.+|||.+ +..+.+..++..+...... +.+.+|.++
T Consensus 77 ~~~~g~~i~f~g~~d~~~-~ik---~~~~~~~~~idEa~~--~~~~~~~~l~~rlr~~~~~-~~i~~t~NP 140 (396)
T TIGR01547 77 ILNTGKKFIFKGLNDKPN-KLK---SGAGIAIIWFEEASQ--LTFEDIKELIPRLRETGGK-KFIIFSSNP 140 (396)
T ss_pred ecCCCeEEEeecccCChh-Hhh---Ccceeeeehhhhhhh--cCHHHHHHHHHHhhccCCc-cEEEEEcCc
Confidence 011 233554433 1111 111 133479999999998 3444555555444332221 246777777
No 235
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=96.34 E-value=0.022 Score=50.05 Aligned_cols=21 Identities=10% Similarity=0.156 Sum_probs=17.2
Q ss_pred CCCCcEEEecCCCCCccchhh
Q psy496 67 PILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~ 87 (319)
..+..++++||+|||||...-
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ 60 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQ 60 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHH
Confidence 455789999999999996654
No 236
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=96.32 E-value=0.00058 Score=57.91 Aligned_cols=124 Identities=15% Similarity=0.144 Sum_probs=53.2
Q ss_pred EEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEE--EEEecccccCCC
Q psy496 73 IIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVG--YQIRLEKELPRK 150 (319)
Q Consensus 73 li~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg--~~~~~~~~~~~~ 150 (319)
+|+|+-|-|||++.-+.+...+.. + ..+|+++.|+.+.+..+.+.....++.. |.... ............
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~-~---~~~I~vtAP~~~~~~~lf~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~ 72 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQK-G---KIRILVTAPSPENVQTLFEFAEKGLKAL----GYKEEKKKRIGQIIKLRFN 72 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS---------EEEE-SS--S-HHHHHCC------------------------------
T ss_pred CccCCCCCCHHHHHHHHHHHHHHh-c---CceEEEecCCHHHHHHHHHHHHhhcccc----ccccccccccccccccccc
Confidence 578999999998887765432221 1 2579999999998888876554432211 10000 000000001112
Q ss_pred CceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc-Chh
Q psy496 151 RGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL-NAE 219 (319)
Q Consensus 151 ~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~-~~~ 219 (319)
+..|.+..|+.+...- ...+++|||||=. +-...+. .+.. ....++||.|+ -.|
T Consensus 73 ~~~i~f~~Pd~l~~~~------~~~DlliVDEAAa--Ip~p~L~----~ll~---~~~~vv~stTi~GYE 127 (177)
T PF05127_consen 73 KQRIEFVAPDELLAEK------PQADLLIVDEAAA--IPLPLLK----QLLR---RFPRVVFSTTIHGYE 127 (177)
T ss_dssp CCC--B--HHHHCCT----------SCEEECTGGG--S-HHHHH----HHHC---CSSEEEEEEEBSSTT
T ss_pred cceEEEECCHHHHhCc------CCCCEEEEechhc--CCHHHHH----HHHh---hCCEEEEEeeccccc
Confidence 3446666776544332 2458999999976 4433333 3332 22356778888 444
No 237
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=96.30 E-value=0.016 Score=58.13 Aligned_cols=46 Identities=17% Similarity=0.303 Sum_probs=29.5
Q ss_pred HHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEE
Q psy496 163 PEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLI 210 (319)
Q Consensus 163 l~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv 210 (319)
.+.....|.....+++||||+|+ +..+..-.+++.+...++...+|
T Consensus 108 ~~~v~~~p~~~~~kViIIDE~~~--Lt~~a~naLLKtLEepp~~~ifI 153 (559)
T PRK05563 108 RDKVKYAPSEAKYKVYIIDEVHM--LSTGAFNALLKTLEEPPAHVIFI 153 (559)
T ss_pred HHHHhhCcccCCeEEEEEECccc--CCHHHHHHHHHHhcCCCCCeEEE
Confidence 34444456677899999999998 55555556666655544443333
No 238
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.29 E-value=0.021 Score=50.84 Aligned_cols=22 Identities=9% Similarity=0.229 Sum_probs=17.4
Q ss_pred CCCCCcEEEecCCCCCccchhh
Q psy496 66 SPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~ 87 (319)
...+.+++++||+|||||....
T Consensus 42 ~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 42 QEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCCCCeEEEECCCCCCHHHHHH
Confidence 3345689999999999996654
No 239
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.29 E-value=0.021 Score=51.55 Aligned_cols=22 Identities=27% Similarity=0.217 Sum_probs=17.6
Q ss_pred CCCCcEEEecCCCCCccchhhH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l 88 (319)
+...++++.||+|||||+.+-.
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ 61 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARI 61 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHH
Confidence 3446799999999999977643
No 240
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.29 E-value=0.015 Score=58.59 Aligned_cols=49 Identities=22% Similarity=0.352 Sum_probs=32.3
Q ss_pred HHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEec
Q psy496 163 PEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMS 213 (319)
Q Consensus 163 l~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lS 213 (319)
.+.+...+....++++||||+|+ +..+..-.+++.+...++...+|+.+
T Consensus 108 ~~~~~~~p~~~~~KVvIIdev~~--Lt~~a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 108 RENVKYLPSRSRYKIFIIDEVHM--LSTNAFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred HHHHHhccccCCceEEEEEChhh--CCHHHHHHHHHHHHcCCCCeEEEEEe
Confidence 34444456678899999999998 55555566666666555555555433
No 241
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.27 E-value=0.044 Score=49.05 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=18.7
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHH
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIA 96 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~ 96 (319)
+.++++|++|+|||..... +...+..
T Consensus 100 ~~~~l~G~~GtGKThLa~a-ia~~l~~ 125 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAA-ICNELLL 125 (244)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHHh
Confidence 5799999999999966543 3444443
No 242
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=96.27 E-value=0.017 Score=49.36 Aligned_cols=48 Identities=21% Similarity=0.329 Sum_probs=30.4
Q ss_pred HHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEe
Q psy496 163 PEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILM 212 (319)
Q Consensus 163 l~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~l 212 (319)
.+.+...+.....+++||||+|. +..+....+++.+...+++..+|+.
T Consensus 85 ~~~~~~~~~~~~~kviiide~~~--l~~~~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 85 VEFLSRTPQESGRRVVIIEDAER--MNEAAANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred HHHHccCcccCCeEEEEEechhh--hCHHHHHHHHHHhcCCCCCeEEEEE
Confidence 44445555677899999999998 4455555555655554444445444
No 243
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=96.25 E-value=0.0057 Score=63.06 Aligned_cols=103 Identities=19% Similarity=0.156 Sum_probs=59.7
Q ss_pred EecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc---ccCCC
Q psy496 74 IYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK---ELPRK 150 (319)
Q Consensus 74 i~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~---~~~~~ 150 (319)
.--.||=|||+++.+|++-....+ ..+.|+. ..--||..=++.+...+... |..+|....... ....-
T Consensus 96 AEMkTGEGKTLvAtLpayLnAL~G---kgVhVVT--vNdYLA~RDae~mg~vy~fL----GLsvG~i~~~~~~~~rr~aY 166 (925)
T PRK12903 96 AEMKTGEGKTITSIAPVYLNALTG---KGVIVST--VNEYLAERDAEEMGKVFNFL----GLSVGINKANMDPNLKREAY 166 (925)
T ss_pred eeecCCCCccHHHHHHHHHHHhcC---CceEEEe--cchhhhhhhHHHHHHHHHHh----CCceeeeCCCCChHHHHHhc
Confidence 444499999999988875333322 2345555 44446555555454443332 777775443111 11112
Q ss_pred CceEEEECchH-----HHHHHhcC---CCCCCccEEEEecccc
Q psy496 151 RGSILYCTAGI-----LPEVMQSD---PILSGVSHIVMDEIHE 185 (319)
Q Consensus 151 ~~~Iiv~Tpg~-----ll~~l~~~---~~l~~v~~vViDEah~ 185 (319)
.++|+++|..- |.+.+... .....+.+.|+||+|.
T Consensus 167 ~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDS 209 (925)
T PRK12903 167 ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDS 209 (925)
T ss_pred cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchh
Confidence 57899999843 44444211 1256788999999996
No 244
>PRK08116 hypothetical protein; Validated
Probab=96.23 E-value=0.038 Score=50.22 Aligned_cols=28 Identities=25% Similarity=0.349 Sum_probs=19.9
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHh
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIAR 97 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~ 97 (319)
+..++++|++|+|||..+. .+.+.+...
T Consensus 114 ~~gl~l~G~~GtGKThLa~-aia~~l~~~ 141 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAA-CIANELIEK 141 (268)
T ss_pred CceEEEECCCCCCHHHHHH-HHHHHHHHc
Confidence 3459999999999996654 355555443
No 245
>PRK09183 transposase/IS protein; Provisional
Probab=96.22 E-value=0.039 Score=49.84 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=19.4
Q ss_pred CCCCCcEEEecCCCCCccchhhHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQF 89 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~ 89 (319)
...++++++.||+|+|||......
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al 122 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIAL 122 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHH
Confidence 456789999999999999766544
No 246
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=96.20 E-value=0.047 Score=56.84 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=18.2
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHH
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEI 95 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~ 95 (319)
..++|+|+||+|||++.-. +++.+.
T Consensus 782 nvLYIyG~PGTGKTATVK~-VLrELq 806 (1164)
T PTZ00112 782 QILYISGMPGTGKTATVYS-VIQLLQ 806 (1164)
T ss_pred ceEEEECCCCCCHHHHHHH-HHHHHH
Confidence 3456999999999988755 345553
No 247
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.20 E-value=0.023 Score=57.63 Aligned_cols=47 Identities=23% Similarity=0.296 Sum_probs=29.1
Q ss_pred HHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEE
Q psy496 163 PEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLIL 211 (319)
Q Consensus 163 l~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~ 211 (319)
++.+...+.....+++||||+|. +..+..-.+++.+...+....+|+
T Consensus 110 i~~a~~~p~~~~~KViIIDEad~--Lt~~a~naLLK~LEePp~~tvfIL 156 (620)
T PRK14948 110 IERAQFAPVQARWKVYVIDECHM--LSTAAFNALLKTLEEPPPRVVFVL 156 (620)
T ss_pred HHHHhhChhcCCceEEEEECccc--cCHHHHHHHHHHHhcCCcCeEEEE
Confidence 33334445567789999999998 555555566666655444444443
No 248
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.18 E-value=0.018 Score=58.01 Aligned_cols=46 Identities=20% Similarity=0.377 Sum_probs=28.0
Q ss_pred HHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEE
Q psy496 164 EVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLIL 211 (319)
Q Consensus 164 ~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~ 211 (319)
+.+...+.....+++||||+|. +..+..-.+++.+....+...+|+
T Consensus 109 ~~~~~~p~~g~~kVIIIDEad~--Lt~~a~naLLk~LEEP~~~~ifIL 154 (624)
T PRK14959 109 EAIGYAPMEGRYKVFIIDEAHM--LTREAFNALLKTLEEPPARVTFVL 154 (624)
T ss_pred HHHHhhhhcCCceEEEEEChHh--CCHHHHHHHHHHhhccCCCEEEEE
Confidence 3333344456789999999998 555555556666554334444444
No 249
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.15 E-value=0.049 Score=58.36 Aligned_cols=109 Identities=19% Similarity=0.127 Sum_probs=62.6
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccccc
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKEL 147 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~ 147 (319)
.++..+|.|+.|+|||+..-. +.+.+...+ ..|+.+.||--.|..+.+ ..+.. +
T Consensus 396 ~~r~~~v~G~AGTGKTt~l~~-~~~~~e~~G----~~V~g~ApTgkAA~~L~e----~~Gi~----a------------- 449 (1102)
T PRK13826 396 PARIAAVVGRAGAGKTTMMKA-AREAWEAAG----YRVVGGALAGKAAEGLEK----EAGIQ----S------------- 449 (1102)
T ss_pred cCCeEEEEeCCCCCHHHHHHH-HHHHHHHcC----CeEEEEcCcHHHHHHHHH----hhCCC----e-------------
Confidence 357799999999999976543 333332222 378888899777655532 22111 0
Q ss_pred CCCCceEEEECchHHHHHH-hcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEeccc
Q psy496 148 PRKRGSILYCTAGILPEVM-QSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSAT 215 (319)
Q Consensus 148 ~~~~~~Iiv~Tpg~ll~~l-~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT 215 (319)
.|-..++-.+ .....+..-++|||||+.+ +....+..+++.+.. ...++|++.-+
T Consensus 450 ---------~TIas~ll~~~~~~~~l~~~~vlVIDEAsM--v~~~~m~~Ll~~~~~--~garvVLVGD~ 505 (1102)
T PRK13826 450 ---------RTLSSWELRWNQGRDQLDNKTVFVLDEAGM--VASRQMALFVEAVTR--AGAKLVLVGDP 505 (1102)
T ss_pred ---------eeHHHHHhhhccCccCCCCCcEEEEECccc--CCHHHHHHHHHHHHh--cCCEEEEECCH
Confidence 0111121111 1223466778999999998 555555555555432 24577776544
No 250
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=96.14 E-value=0.0058 Score=64.00 Aligned_cols=102 Identities=19% Similarity=0.168 Sum_probs=60.5
Q ss_pred ecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecc----cccCCC
Q psy496 75 YTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLE----KELPRK 150 (319)
Q Consensus 75 ~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~----~~~~~~ 150 (319)
--.||=|||+++.+|++-..+.+. .+.|+. ..-=||..=++.+...+... |..+|...... .+...-
T Consensus 188 EM~TGEGKTLvAtlp~yLnAL~Gk---gVHvVT--VNDYLA~RDaewmgply~fL----GLsvg~i~~~~~~~~~rr~aY 258 (1112)
T PRK12901 188 EMATGEGKTLVATLPVYLNALTGN---GVHVVT--VNDYLAKRDSEWMGPLYEFH----GLSVDCIDKHQPNSEARRKAY 258 (1112)
T ss_pred eecCCCCchhHHHHHHHHHHHcCC---CcEEEE--echhhhhccHHHHHHHHHHh----CCceeecCCCCCCHHHHHHhC
Confidence 344999999999999865444433 456666 33335544444444433322 77777443211 111113
Q ss_pred CceEEEECc-----hHHHHHHhcCC---CCCCccEEEEecccc
Q psy496 151 RGSILYCTA-----GILPEVMQSDP---ILSGVSHIVMDEIHE 185 (319)
Q Consensus 151 ~~~Iiv~Tp-----g~ll~~l~~~~---~l~~v~~vViDEah~ 185 (319)
.++|.++|. +.|.+.+..++ ....+.+.||||+|.
T Consensus 259 ~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDS 301 (1112)
T PRK12901 259 NADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDS 301 (1112)
T ss_pred CCcceecCCCccccccchhccccchHhhhCcCCceeEeechhh
Confidence 678999997 44555553322 256689999999996
No 251
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.11 E-value=0.038 Score=54.03 Aligned_cols=36 Identities=22% Similarity=0.346 Sum_probs=23.2
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEe
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVT 108 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~ 108 (319)
..++++||+|+|||...- ++.+.+... .+..+++++
T Consensus 149 ~~l~l~G~~G~GKThL~~-ai~~~~~~~--~~~~~v~yi 184 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLH-AIGNYILEK--NPNAKVVYV 184 (450)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHh--CCCCeEEEE
Confidence 469999999999996653 344444332 123467665
No 252
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.10 E-value=0.043 Score=52.81 Aligned_cols=37 Identities=24% Similarity=0.417 Sum_probs=24.2
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEec
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQ 109 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~ 109 (319)
..++|+||+|+|||... ..+.+.+.... +...++++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~--~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENN--PNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhC--CCCcEEEEE
Confidence 45899999999999765 44555554432 234666753
No 253
>KOG1002|consensus
Probab=96.08 E-value=0.05 Score=52.67 Aligned_cols=125 Identities=19% Similarity=0.227 Sum_probs=68.6
Q ss_pred EEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccccc----
Q psy496 72 SIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKEL---- 147 (319)
Q Consensus 72 vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~---- 147 (319)
-++.-+-|-|||.+....++..+.. ..-++++|+.++ .|..+.+..... |....+...+....
T Consensus 207 GiLADEMGMGKTIQtIaLllae~~r------a~tLVvaP~VAl-mQW~nEI~~~T~------gslkv~~YhG~~R~~nik 273 (791)
T KOG1002|consen 207 GILADEMGMGKTIQTIALLLAEVDR------APTLVVAPTVAL-MQWKNEIERHTS------GSLKVYIYHGAKRDKNIK 273 (791)
T ss_pred ceehhhhccchHHHHHHHHHhcccc------CCeeEEccHHHH-HHHHHHHHHhcc------CceEEEEEecccccCCHH
Confidence 3667779999998876666653322 124455599877 455555555443 22222222211111
Q ss_pred CCCCceEEEECchHHHHHHhc--------------CCCCCCccE--EEEecccc---cccchhHHHHHHHhhhccccCce
Q psy496 148 PRKRGSILYCTAGILPEVMQS--------------DPILSGVSH--IVMDEIHE---RSMISDFLLAILKDVTDKRKDLK 208 (319)
Q Consensus 148 ~~~~~~Iiv~Tpg~ll~~l~~--------------~~~l~~v~~--vViDEah~---~~~~~~~~~~~l~~~~~~~~~~q 208 (319)
...+.+++.+|...+-...+. ...|+++++ ||+||||. |...+. +.+..+. ..+
T Consensus 274 el~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTA------rAV~~L~-tt~ 346 (791)
T KOG1002|consen 274 ELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTA------RAVFALE-TTY 346 (791)
T ss_pred HhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccccHH------HHHHhhH-hhh
Confidence 113567999999877555522 112555554 89999996 322222 1111111 225
Q ss_pred EEEecccc
Q psy496 209 LILMSATL 216 (319)
Q Consensus 209 iv~lSAT~ 216 (319)
.+.+|.|+
T Consensus 347 rw~LSGTP 354 (791)
T KOG1002|consen 347 RWCLSGTP 354 (791)
T ss_pred hhhccCCc
Confidence 67899998
No 254
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=96.07 E-value=0.016 Score=56.42 Aligned_cols=70 Identities=17% Similarity=0.092 Sum_probs=48.0
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
++--|++||.-+..|-+ ...+.-.+-|-||||||.....-|- .+ + ...++++|.+-||.|++..++.
T Consensus 13 PaGDQP~AI~~Lv~gi~-----~g~~~QtLLGvTGSGKTfT~AnVI~-~~---~----rPtLV~AhNKTLAaQLy~Efk~ 79 (663)
T COG0556 13 PAGDQPEAIAELVEGIE-----NGLKHQTLLGVTGSGKTFTMANVIA-KV---Q----RPTLVLAHNKTLAAQLYSEFKE 79 (663)
T ss_pred CCCCcHHHHHHHHHHHh-----cCceeeEEeeeccCCchhHHHHHHH-Hh---C----CCeEEEecchhHHHHHHHHHHH
Confidence 44558888877665433 2334567778999999977654432 21 1 1344455999999999999999
Q ss_pred Hhc
Q psy496 125 ERD 127 (319)
Q Consensus 125 ~~~ 127 (319)
++-
T Consensus 80 fFP 82 (663)
T COG0556 80 FFP 82 (663)
T ss_pred hCc
Confidence 875
No 255
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.07 E-value=0.03 Score=51.70 Aligned_cols=43 Identities=26% Similarity=0.511 Sum_probs=29.7
Q ss_pred CCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecc
Q psy496 170 PILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSA 214 (319)
Q Consensus 170 ~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSA 214 (319)
+.....+++||||||. +..+..-..++.+...+.+..+++.+-
T Consensus 105 ~~~~~~kviiidead~--mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 105 PLEGGYKVVIIDEADK--LTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCCCCceEEEeCcHHH--HhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 3357899999999998 566666666666665555656655543
No 256
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.03 E-value=0.025 Score=46.12 Aligned_cols=21 Identities=38% Similarity=0.616 Sum_probs=16.3
Q ss_pred EEEecCCCCCccchhhHHHHH
Q psy496 72 SIIYTSTGCGKTTQVPQFILD 92 (319)
Q Consensus 72 vli~apTGSGKT~~~~l~il~ 92 (319)
++|+|++|+|||+.....+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~ 22 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN 22 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH
Confidence 689999999999876554433
No 257
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=96.03 E-value=0.02 Score=51.55 Aligned_cols=20 Identities=30% Similarity=0.322 Sum_probs=16.6
Q ss_pred CCcEEEecCCCCCccchhhH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l 88 (319)
...++|+||+|||||+..-.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~ 62 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRN 62 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHH
Confidence 45799999999999977654
No 258
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.03 E-value=0.042 Score=51.13 Aligned_cols=20 Identities=25% Similarity=0.409 Sum_probs=16.3
Q ss_pred CcEEEecCCCCCccchhhHH
Q psy496 70 SPSIIYTSTGCGKTTQVPQF 89 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~ 89 (319)
..++++||+|+|||+.+-..
T Consensus 37 ~~lll~Gp~GtGKT~la~~~ 56 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRAL 56 (337)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 37999999999999776443
No 259
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.99 E-value=0.082 Score=47.64 Aligned_cols=52 Identities=10% Similarity=0.055 Sum_probs=32.8
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
..+.+.++++.||+|+|||..+.. +.+.+...+ .+|+++ ++.++..++...+
T Consensus 101 ~~~~~~nl~l~G~~G~GKThLa~A-i~~~l~~~g----~sv~f~-~~~el~~~Lk~~~ 152 (254)
T COG1484 101 FFERGENLVLLGPPGVGKTHLAIA-IGNELLKAG----ISVLFI-TAPDLLSKLKAAF 152 (254)
T ss_pred HhccCCcEEEECCCCCcHHHHHHH-HHHHHHHcC----CeEEEE-EHHHHHHHHHHHH
Confidence 334788999999999999966543 334444322 244442 6777766665533
No 260
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=95.98 E-value=0.12 Score=45.38 Aligned_cols=36 Identities=22% Similarity=0.336 Sum_probs=23.3
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEe
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVT 108 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~ 108 (319)
..++|+||+|+|||.. +.++.+.+..... ..+|+|+
T Consensus 35 ~~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~--~~~v~y~ 70 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHL-LQAIANEAQKQHP--GKRVVYL 70 (219)
T ss_dssp SEEEEEESTTSSHHHH-HHHHHHHHHHHCT--TS-EEEE
T ss_pred CceEEECCCCCCHHHH-HHHHHHHHHhccc--cccceee
Confidence 4689999999999973 4555555544322 3467774
No 261
>KOG1000|consensus
Probab=95.91 E-value=0.1 Score=50.54 Aligned_cols=133 Identities=15% Similarity=0.112 Sum_probs=68.3
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecc
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLE 144 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~ 144 (319)
....+...+|.-.-|=|||..++- |. ..+..+ -.+++++|.... ...++.+...+.... .+-...+.+
T Consensus 210 aL~RgGR~llADeMGLGKTiQAla-IA-~yyraE----wplliVcPAsvr-ftWa~al~r~lps~~-----pi~vv~~~~ 277 (689)
T KOG1000|consen 210 ALERGGRILLADEMGLGKTIQALA-IA-RYYRAE----WPLLIVCPASVR-FTWAKALNRFLPSIH-----PIFVVDKSS 277 (689)
T ss_pred HHhcCCeEEEecccccchHHHHHH-HH-HHHhhc----CcEEEEecHHHh-HHHHHHHHHhccccc-----ceEEEeccc
Confidence 345678889999999999987633 22 222222 134455585322 223333333333221 111122233
Q ss_pred cccCC--CCceEEEECchHHHHHHhcCCCCCCccEEEEecccc-cccch---hHHHHHHHhhhccccCceEEEecccc
Q psy496 145 KELPR--KRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHE-RSMIS---DFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 145 ~~~~~--~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~-~~~~~---~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
+.... ....|.|.+.+.+..+-.. -.-..++++|+||.|. ++... .....+++. -.++|++|.|+
T Consensus 278 D~~~~~~t~~~v~ivSye~ls~l~~~-l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~------akhvILLSGTP 348 (689)
T KOG1000|consen 278 DPLPDVCTSNTVAIVSYEQLSLLHDI-LKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKV------AKHVILLSGTP 348 (689)
T ss_pred CCccccccCCeEEEEEHHHHHHHHHH-HhcccceEEEEechhhhhccchhhhhhhhhHHHH------hhheEEecCCc
Confidence 32211 1245888888876443311 1123589999999996 11111 112222221 23789999998
No 262
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.91 E-value=0.042 Score=54.16 Aligned_cols=135 Identities=16% Similarity=0.132 Sum_probs=73.4
Q ss_pred cEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccCCC
Q psy496 71 PSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELPRK 150 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~~~ 150 (319)
.+++.-|=|.|||+......+..+...+ .....|+++.++++-|..+++.+.......... ....+..+ ....
T Consensus 24 ~~~l~v~RkNGKS~l~a~i~ly~l~~~g-~~~~~i~~~A~~~~QA~~~f~~~~~~i~~~~~l-~~~~~~~~-----~~~~ 96 (477)
T PF03354_consen 24 EVYLEVPRKNGKSTLAAAIALYMLFLDG-EPGAEIYCAANTRDQAKIVFDEAKKMIEASPEL-RKRKKPKI-----IKSN 96 (477)
T ss_pred EEEEEEcCccCccHHHHHHHHHHHhcCC-ccCceEEEEeCCHHHHHHHHHHHHHHHHhChhh-ccchhhhh-----hhhh
Confidence 4667778999999877665555554332 224578899999999999998887775432200 00000000 0001
Q ss_pred CceEEEECchHHHHHHhcCC---CCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecc
Q psy496 151 RGSILYCTAGILPEVMQSDP---ILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSA 214 (319)
Q Consensus 151 ~~~Iiv~Tpg~ll~~l~~~~---~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSA 214 (319)
+..|.....+..++.+..++ .=.+.+++|+||+|.. ...-+...++.-...+++.+++.+|-
T Consensus 97 ~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~--~~~~~~~~l~~g~~~r~~pl~~~IST 161 (477)
T PF03354_consen 97 KKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAH--KDDELYDALESGMGARPNPLIIIIST 161 (477)
T ss_pred ceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCC--CCHHHHHHHHhhhccCCCceEEEEeC
Confidence 12233333333333332211 1135789999999983 33324444444444455666666643
No 263
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.88 E-value=0.029 Score=53.88 Aligned_cols=47 Identities=19% Similarity=0.254 Sum_probs=29.3
Q ss_pred HHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEe
Q psy496 164 EVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILM 212 (319)
Q Consensus 164 ~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~l 212 (319)
+.+...+...+.+++||||+|. +..+....+++.+...++...+|+.
T Consensus 117 ~~~~~~p~~~~~kvvIIdea~~--l~~~~~~~LLk~LEep~~~t~~Il~ 163 (397)
T PRK14955 117 ENVRYGPQKGRYRVYIIDEVHM--LSIAAFNAFLKTLEEPPPHAIFIFA 163 (397)
T ss_pred HHHhhchhcCCeEEEEEeChhh--CCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 3344456778899999999998 4444444455555544444444443
No 264
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.79 E-value=0.081 Score=48.72 Aligned_cols=19 Identities=26% Similarity=0.291 Sum_probs=15.6
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
.+++++||+|+|||+..-.
T Consensus 39 ~~~ll~G~~G~GKt~~~~~ 57 (319)
T PRK00440 39 PHLLFAGPPGTGKTTAALA 57 (319)
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 4589999999999976643
No 265
>KOG0991|consensus
Probab=95.77 E-value=0.026 Score=49.76 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=20.3
Q ss_pred hhhcCCCCCcEEEecCCCCCccchhh
Q psy496 62 CLTLSPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 62 ~l~~~~~~~~vli~apTGSGKT~~~~ 87 (319)
+++...+--+++++||+|+|||++..
T Consensus 41 via~~gnmP~liisGpPG~GKTTsi~ 66 (333)
T KOG0991|consen 41 VIAKEGNMPNLIISGPPGTGKTTSIL 66 (333)
T ss_pred HHHHcCCCCceEeeCCCCCchhhHHH
Confidence 44445555689999999999998864
No 266
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.77 E-value=0.17 Score=46.88 Aligned_cols=134 Identities=18% Similarity=0.187 Sum_probs=74.2
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccC
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELP 148 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~ 148 (319)
..+++++|-.|+|||+........ +... +.++.+...-..|+.|....+.|++..+..+ +......+
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~-l~~~--g~~VllaA~DTFRAaAiEQL~~w~er~gv~v----------I~~~~G~D 205 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKY-LKQQ--GKSVLLAAGDTFRAAAIEQLEVWGERLGVPV----------ISGKEGAD 205 (340)
T ss_pred cEEEEEEecCCCchHhHHHHHHHH-HHHC--CCeEEEEecchHHHHHHHHHHHHHHHhCCeE----------EccCCCCC
Confidence 456888999999999987664332 2222 2233333445789999999998988865433 21111111
Q ss_pred CCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhc-cc------cCceEEEecccc--Chh
Q psy496 149 RKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTD-KR------KDLKLILMSATL--NAE 219 (319)
Q Consensus 149 ~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~-~~------~~~qiv~lSAT~--~~~ 219 (319)
+ .....+-+.. ..-.++++|++|-|-+.. +..-+..-++.+.+ .. |.--++.+-||. |.-
T Consensus 206 p---------AaVafDAi~~-Akar~~DvvliDTAGRLh-nk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal 274 (340)
T COG0552 206 P---------AAVAFDAIQA-AKARGIDVVLIDTAGRLH-NKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNAL 274 (340)
T ss_pred c---------HHHHHHHHHH-HHHcCCCEEEEeCccccc-CchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHH
Confidence 1 1123343322 123689999999998622 22222233332222 11 222455568888 655
Q ss_pred hHhhhhC
Q psy496 220 KFSQFFG 226 (319)
Q Consensus 220 ~l~~~l~ 226 (319)
.-++.|.
T Consensus 275 ~QAk~F~ 281 (340)
T COG0552 275 SQAKIFN 281 (340)
T ss_pred HHHHHHH
Confidence 5555554
No 267
>PRK12377 putative replication protein; Provisional
Probab=95.76 E-value=0.083 Score=47.42 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=19.1
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIA 96 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~ 96 (319)
..+++++||+|+|||..... +.+.+..
T Consensus 101 ~~~l~l~G~~GtGKThLa~A-Ia~~l~~ 127 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAA-IGNRLLA 127 (248)
T ss_pred CCeEEEECCCCCCHHHHHHH-HHHHHHH
Confidence 46899999999999965433 3444443
No 268
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=95.76 E-value=0.098 Score=50.09 Aligned_cols=135 Identities=15% Similarity=0.193 Sum_probs=81.6
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccC
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELP 148 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~ 148 (319)
..+++++|=-|||||+...-... . +.. ++..+.++..-..|..|....+.+++..+..+ |.. +...+
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~-~-lkk-~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~--------f~~--~~~~~ 166 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAK-Y-LKK-KGKKVLLVAADTYRPAAIEQLKQLAEQVGVPF--------FGS--GTEKD 166 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHH-H-HHH-cCCceEEEecccCChHHHHHHHHHHHHcCCce--------ecC--CCCCC
Confidence 35688899999999988765432 1 222 45566777777899999998888887655433 011 11111
Q ss_pred CCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc--ChhhHhhhhC
Q psy496 149 RKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL--NAEKFSQFFG 226 (319)
Q Consensus 149 ~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~l~ 226 (319)
+ +-++.- -++..+ ...++++|+|-|-+...+.++...+...-....|+--++.+-|++ +....++-|.
T Consensus 167 P----v~Iak~--al~~ak----~~~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~GQdA~~~A~aF~ 236 (451)
T COG0541 167 P----VEIAKA--ALEKAK----EEGYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIGQDAVNTAKAFN 236 (451)
T ss_pred H----HHHHHH--HHHHHH----HcCCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccchHHHHHHHHHh
Confidence 1 111111 122222 246899999999986565555555544444466776666777777 6666655553
No 269
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=95.75 E-value=0.026 Score=55.89 Aligned_cols=66 Identities=14% Similarity=0.051 Sum_probs=46.3
Q ss_pred HHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccE-EEEecccHHHHHHHHHHHHHH
Q psy496 60 NKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECC-IMVTQPRRISAIAIAERVAQE 125 (319)
Q Consensus 60 ~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~-vl~~~Ptr~la~q~~~~~~~~ 125 (319)
+|=+...+.|..++|+|..|||||++++.=+.-.++......+.+ |+++.|.|.....+.+.+-++
T Consensus 217 QneIIR~ek~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeL 283 (747)
T COG3973 217 QNEIIRFEKNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPEL 283 (747)
T ss_pred HHHHHhccCCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhh
Confidence 344445667888999999999999998766554444433222223 888889999988888765544
No 270
>PRK04195 replication factor C large subunit; Provisional
Probab=95.72 E-value=0.069 Score=52.67 Aligned_cols=19 Identities=26% Similarity=0.471 Sum_probs=16.3
Q ss_pred CCcEEEecCCCCCccchhh
Q psy496 69 LSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~ 87 (319)
...++|+||+|+|||+.+-
T Consensus 39 ~~~lLL~GppG~GKTtla~ 57 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAH 57 (482)
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 5679999999999997763
No 271
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.68 E-value=0.028 Score=53.25 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=24.1
Q ss_pred cccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhH
Q psy496 47 VTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 47 ~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l 88 (319)
.-|..++..+. +.+....-...++++||+|+|||+....
T Consensus 20 ig~~~~~~~l~---~~i~~~~~~~~~L~~G~~G~GKt~~a~~ 58 (367)
T PRK14970 20 VGQSHITNTLL---NAIENNHLAQALLFCGPRGVGKTTCARI 58 (367)
T ss_pred CCcHHHHHHHH---HHHHcCCCCeEEEEECCCCCCHHHHHHH
Confidence 44555544332 3333333446799999999999976643
No 272
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=95.66 E-value=0.041 Score=56.28 Aligned_cols=125 Identities=18% Similarity=0.183 Sum_probs=73.3
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEE--EEecccc-
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGY--QIRLEKE- 146 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~--~~~~~~~- 146 (319)
..++|+|.=|=|||.+.-+.+.. +.... + ..+|+++.|+.+.+..+.+...+-+... |..-+. ...++-.
T Consensus 232 ~~~vlTAdRGRGKSA~lGi~~~~-~~~~~-~-~~~iiVTAP~~~nv~~Lf~fa~~~l~~l----g~~~~v~~d~~g~~~~ 304 (758)
T COG1444 232 RALVLTADRGRGKSAALGIALAA-AARLA-G-SVRIIVTAPTPANVQTLFEFAGKGLEFL----GYKRKVAPDALGEIRE 304 (758)
T ss_pred ceEEEEcCCCCcHhHHHhHHHHH-HHHhc-C-CceEEEeCCCHHHHHHHHHHHHHhHHHh----CCccccccccccceee
Confidence 38999999999999999888732 22222 1 4689999999999988887665544322 111110 0000000
Q ss_pred cCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc-Chh
Q psy496 147 LPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL-NAE 219 (319)
Q Consensus 147 ~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~-~~~ 219 (319)
...+...|-+-+|.... ..-+++|||||=. +..-++..+++ ..+.++||.|+ -.|
T Consensus 305 ~~~~~~~i~y~~P~~a~---------~~~DllvVDEAAa--IplplL~~l~~-------~~~rv~~sTTIhGYE 360 (758)
T COG1444 305 VSGDGFRIEYVPPDDAQ---------EEADLLVVDEAAA--IPLPLLHKLLR-------RFPRVLFSTTIHGYE 360 (758)
T ss_pred ecCCceeEEeeCcchhc---------ccCCEEEEehhhc--CChHHHHHHHh-------hcCceEEEeeecccc
Confidence 00111224444554322 1268999999976 44444444433 22568899999 444
No 273
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.64 E-value=0.12 Score=52.14 Aligned_cols=140 Identities=16% Similarity=0.181 Sum_probs=85.0
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceE----EEEE--ec
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSV----GYQI--RL 143 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~v----g~~~--~~ 143 (319)
+-.+...|==.|||+... +++..+...- ...+|+++.|.+..+...++++...+.... ++..+ |-.+ ..
T Consensus 255 k~tVflVPRR~GKTwivv-~iI~~ll~s~--~Gi~IgytAH~~~ts~~vF~eI~~~le~~f--~~~~v~~vkGe~I~i~f 329 (738)
T PHA03368 255 RATVFLVPRRHGKTWFLV-PLIALALATF--RGIKIGYTAHIRKATEPVFEEIGARLRQWF--GASRVDHVKGETISFSF 329 (738)
T ss_pred cceEEEecccCCchhhHH-HHHHHHHHhC--CCCEEEEEcCcHHHHHHHHHHHHHHHhhhc--chhheeeecCcEEEEEe
Confidence 446778889999999776 5555444321 135899999999999999988887654321 01111 1001 11
Q ss_pred ccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEeccccChhhHhh
Q psy496 144 EKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATLNAEKFSQ 223 (319)
Q Consensus 144 ~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~~~~~l~~ 223 (319)
.+. .++.|.+++.. =-.-++ =.+++++|+|||+. +..+.+..++-.+... +.++|.+|-|-..+....
T Consensus 330 ~nG---~kstI~FaSar-ntNsiR----GqtfDLLIVDEAqF--Ik~~al~~ilp~l~~~--n~k~I~ISS~Ns~~~sTS 397 (738)
T PHA03368 330 PDG---SRSTIVFASSH-NTNGIR----GQDFNLLFVDEANF--IRPDAVQTIMGFLNQT--NCKIIFVSSTNTGKASTS 397 (738)
T ss_pred cCC---CccEEEEEecc-CCCCcc----CCcccEEEEechhh--CCHHHHHHHHHHHhcc--CccEEEEecCCCCccchH
Confidence 110 11245555331 000011 24799999999998 6667777777555444 668999998875555555
Q ss_pred hhC
Q psy496 224 FFG 226 (319)
Q Consensus 224 ~l~ 226 (319)
|+.
T Consensus 398 FL~ 400 (738)
T PHA03368 398 FLY 400 (738)
T ss_pred HHH
Confidence 553
No 274
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.59 E-value=0.17 Score=49.30 Aligned_cols=38 Identities=24% Similarity=0.348 Sum_probs=24.3
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecc
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQP 110 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~P 110 (319)
..++++||+|+|||...- .+.+.+.... +..+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl~-ai~~~l~~~~--~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQ-SIGNYVVQNE--PDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHHH-HHHHHHHHhC--CCCeEEEEEH
Confidence 469999999999996553 3444443322 2347777543
No 275
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.53 E-value=0.11 Score=50.80 Aligned_cols=46 Identities=20% Similarity=0.137 Sum_probs=27.8
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHH
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIA 119 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~ 119 (319)
..++|+|++|+|||... ..+.+.+.... +..+++++.. .++...+.
T Consensus 142 npl~i~G~~G~GKTHLl-~Ai~~~l~~~~--~~~~v~yv~~-~~f~~~~~ 187 (450)
T PRK14087 142 NPLFIYGESGMGKTHLL-KAAKNYIESNF--SDLKVSYMSG-DEFARKAV 187 (450)
T ss_pred CceEEECCCCCcHHHHH-HHHHHHHHHhC--CCCeEEEEEH-HHHHHHHH
Confidence 45899999999999554 45555544322 2346777544 34444433
No 276
>PRK06921 hypothetical protein; Provisional
Probab=95.52 E-value=0.079 Score=48.07 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=20.1
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIA 96 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~ 96 (319)
.+.+++++|++|+|||.... .+...+..
T Consensus 116 ~~~~l~l~G~~G~GKThLa~-aia~~l~~ 143 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLT-AAANELMR 143 (266)
T ss_pred CCCeEEEECCCCCcHHHHHH-HHHHHHhh
Confidence 46789999999999996543 34444443
No 277
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.50 E-value=0.033 Score=57.06 Aligned_cols=50 Identities=26% Similarity=0.334 Sum_probs=32.3
Q ss_pred HHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEe
Q psy496 161 ILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILM 212 (319)
Q Consensus 161 ~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~l 212 (319)
.+.+.+...|.....+++||||+|. +..+..-.+++.+...++...+|+.
T Consensus 105 eLie~~~~~P~~g~~KV~IIDEa~~--LT~~A~NALLKtLEEPP~~tifILa 154 (725)
T PRK07133 105 ELIENVKNLPTQSKYKIYIIDEVHM--LSKSAFNALLKTLEEPPKHVIFILA 154 (725)
T ss_pred HHHHHHHhchhcCCCEEEEEEChhh--CCHHHHHHHHHHhhcCCCceEEEEE
Confidence 3444455556678899999999998 5555566666666554444444443
No 278
>KOG1802|consensus
Probab=95.50 E-value=0.031 Score=55.81 Aligned_cols=56 Identities=20% Similarity=0.251 Sum_probs=42.6
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQE 125 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~ 125 (319)
.-.+...+|+||+|+|||....-.+++-... . ...||+.+|...++.|+++.+.+.
T Consensus 422 VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~-~---~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 422 VLQRPLSLIQGPPGTGKTVTSATIVYHLARQ-H---AGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred HHcCCceeeecCCCCCceehhHHHHHHHHHh-c---CCceEEEcccchhHHHHHHHHHhc
Confidence 3345568999999999998876666554433 2 347888899999999999887764
No 279
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.50 E-value=0.066 Score=51.08 Aligned_cols=26 Identities=31% Similarity=0.491 Sum_probs=19.1
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l 94 (319)
...+++|+||+|+|||+..-. +++.+
T Consensus 54 ~~~~~lI~G~~GtGKT~l~~~-v~~~l 79 (394)
T PRK00411 54 RPLNVLIYGPPGTGKTTTVKK-VFEEL 79 (394)
T ss_pred CCCeEEEECCCCCCHHHHHHH-HHHHH
Confidence 346799999999999987544 33433
No 280
>CHL00181 cbbX CbbX; Provisional
Probab=95.43 E-value=0.13 Score=47.19 Aligned_cols=22 Identities=27% Similarity=0.111 Sum_probs=17.2
Q ss_pred CCCcEEEecCCCCCccchhhHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQF 89 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~ 89 (319)
.+-++++.||+|||||+.+-..
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~l 79 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKM 79 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHH
Confidence 3456899999999999776443
No 281
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.42 E-value=0.17 Score=47.70 Aligned_cols=27 Identities=30% Similarity=0.477 Sum_probs=19.7
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l 94 (319)
....+++|+||+|+|||+..- .+++.+
T Consensus 38 ~~~~~i~I~G~~GtGKT~l~~-~~~~~l 64 (365)
T TIGR02928 38 SRPSNVFIYGKTGTGKTAVTK-YVMKEL 64 (365)
T ss_pred CCCCcEEEECCCCCCHHHHHH-HHHHHH
Confidence 344689999999999997653 344444
No 282
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=95.41 E-value=0.08 Score=55.80 Aligned_cols=41 Identities=24% Similarity=0.255 Sum_probs=24.3
Q ss_pred cccccchhhHHHHHHhhh--cCC---CCCcEEEecCCCCCccchhh
Q psy496 47 VTQPRRISAIALINKCLT--LSP---ILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 47 ~~Q~~~ip~~~~~~~~l~--~~~---~~~~vli~apTGSGKT~~~~ 87 (319)
.=|..++..+...-.... ... ...+++++||||+|||..+-
T Consensus 569 ~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~ 614 (852)
T TIGR03345 569 IGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETAL 614 (852)
T ss_pred cChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHH
Confidence 456677766654322211 111 11358999999999997653
No 283
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=95.40 E-value=0.33 Score=45.17 Aligned_cols=131 Identities=12% Similarity=0.135 Sum_probs=58.1
Q ss_pred EEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH---HHhccccCCCCceEEEEEecccc-cC
Q psy496 73 IIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA---QERDEQCGRPGSSVGYQIRLEKE-LP 148 (319)
Q Consensus 73 li~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~---~~~~~~~~~~g~~vg~~~~~~~~-~~ 148 (319)
++.++.|+|||......++........ ...++++...+.+...+.+... ....... ........+.. ..
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~--~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 73 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPP--GRRVIIASTYRQARDIFGRFWKGIIELLPSWF-----EIKFNEWNDRKIIL 73 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS----EEEEEESSHHHHHHHHHHHHHHHHTS-TTT-----S--EEEE-SSEEEE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCC--CcEEEEecCHHHHHHHHHHhHHHHHHHHHHhc-----CcccccCCCCcEEe
Confidence 467889999999988777766554432 3466666555556555444222 2222211 11111111111 11
Q ss_pred CCCceEEEECchH--HHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 149 RKRGSILYCTAGI--LPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 149 ~~~~~Iiv~Tpg~--ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
.....|.+.+.+. -...+.+ ..++++++||+-. ...+.....+............+.+|-|.
T Consensus 74 ~nG~~i~~~~~~~~~~~~~~~G----~~~~~i~iDE~~~--~~~~~~~~~~~~~~~~~~~~~~~~~s~p~ 137 (384)
T PF03237_consen 74 PNGSRIQFRGADSPDSGDNIRG----FEYDLIIIDEAAK--VPDDAFSELIRRLRATWGGSIRMYISTPP 137 (384)
T ss_dssp TTS-EEEEES-----SHHHHHT----S--SEEEEESGGG--STTHHHHHHHHHHHHCSTT--EEEEEE--
T ss_pred cCceEEEEeccccccccccccc----cccceeeeeeccc--CchHHHHHHHHhhhhcccCcceEEeecCC
Confidence 2334466665432 2234444 5788999999876 33343444444444333332333566655
No 284
>PRK13342 recombination factor protein RarA; Reviewed
Probab=95.36 E-value=0.09 Score=50.80 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=16.2
Q ss_pred CCcEEEecCCCCCccchhhH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l 88 (319)
..+++++||+|+|||+.+-.
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ 55 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARI 55 (413)
T ss_pred CceEEEECCCCCCHHHHHHH
Confidence 35799999999999976643
No 285
>PRK08939 primosomal protein DnaI; Reviewed
Probab=95.35 E-value=0.18 Score=46.77 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=19.4
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEI 95 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~ 95 (319)
.++++++.|++|+|||.... ++.+.+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~-Aia~~l~ 181 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLA-AIANELA 181 (306)
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 45689999999999996553 3344444
No 286
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=95.35 E-value=0.1 Score=47.84 Aligned_cols=19 Identities=26% Similarity=0.151 Sum_probs=15.9
Q ss_pred CCcEEEecCCCCCccchhh
Q psy496 69 LSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~ 87 (319)
..++++.||+|||||+.+-
T Consensus 58 ~~~vll~G~pGTGKT~lA~ 76 (284)
T TIGR02880 58 TLHMSFTGNPGTGKTTVAL 76 (284)
T ss_pred CceEEEEcCCCCCHHHHHH
Confidence 4479999999999997763
No 287
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=95.27 E-value=0.008 Score=56.52 Aligned_cols=44 Identities=14% Similarity=0.068 Sum_probs=30.7
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISA 115 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la 115 (319)
...+.|++|+||||||||+.. ..++..+-. ..+++.+..+.|+.
T Consensus 159 v~~~~nilI~G~tGSGKTTll-~aLl~~i~~-----~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTMS-KTLISAIPP-----QERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHHH-HHHHcccCC-----CCCEEEECCCcccc
Confidence 446789999999999999765 334443322 23788888887763
No 288
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.25 E-value=0.1 Score=43.40 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=56.9
Q ss_pred cEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccCC-
Q psy496 71 PSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELPR- 149 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~~- 149 (319)
.+.|+|++|+|||+.... +.+.+...+-.. +-+++ |- ++ .+|..+|+.+-.-.....
T Consensus 7 ki~ITG~PGvGKtTl~~k-i~e~L~~~g~kv-gGf~t--~E----------VR--------~gGkR~GF~Ivdl~tg~~~ 64 (179)
T COG1618 7 KIFITGRPGVGKTTLVLK-IAEKLREKGYKV-GGFIT--PE----------VR--------EGGKRIGFKIVDLATGEEG 64 (179)
T ss_pred EEEEeCCCCccHHHHHHH-HHHHHHhcCcee-eeEEe--ee----------ee--------cCCeEeeeEEEEccCCceE
Confidence 488999999999988754 344444432111 11222 21 11 126777766542221100
Q ss_pred -----CCceEEEECchHHHHHHhc------CCCCCCccEEEEecccccccchhHHHHHHHhhhcc
Q psy496 150 -----KRGSILYCTAGILPEVMQS------DPILSGVSHIVMDEIHERSMISDFLLAILKDVTDK 203 (319)
Q Consensus 150 -----~~~~Iiv~Tpg~ll~~l~~------~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~ 203 (319)
......++-.+...+.+.. ...+..-+++||||+--+-+...-+...+..+...
T Consensus 65 ~la~~~~~~~rvGkY~V~v~~le~i~~~al~rA~~~aDvIIIDEIGpMElks~~f~~~ve~vl~~ 129 (179)
T COG1618 65 ILARVGFSRPRVGKYGVNVEGLEEIAIPALRRALEEADVIIIDEIGPMELKSKKFREAVEEVLKS 129 (179)
T ss_pred EEEEcCCCCcccceEEeeHHHHHHHhHHHHHHHhhcCCEEEEecccchhhccHHHHHHHHHHhcC
Confidence 1122334444444333311 11245579999999987544444555555555543
No 289
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=95.24 E-value=0.013 Score=54.57 Aligned_cols=46 Identities=20% Similarity=0.185 Sum_probs=31.7
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRIS 114 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~l 114 (319)
.....|++|+|+||||||+.. ..++..+.... +..+++.+..+.|+
T Consensus 141 v~~~~nilI~G~tGSGKTTll-~aL~~~i~~~~--~~~rivtiEd~~El 186 (323)
T PRK13833 141 IDSRLNIVISGGTGSGKTTLA-NAVIAEIVASA--PEDRLVILEDTAEI 186 (323)
T ss_pred HHcCCeEEEECCCCCCHHHHH-HHHHHHHhcCC--CCceEEEecCCccc
Confidence 345678999999999999775 44555543211 13478888878776
No 290
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=95.21 E-value=0.079 Score=49.59 Aligned_cols=51 Identities=22% Similarity=0.304 Sum_probs=35.3
Q ss_pred HHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecc
Q psy496 162 LPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSA 214 (319)
Q Consensus 162 ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSA 214 (319)
+.+.+...+.....+++||||+|. +..+..-++++.+...+++..+|+.|.
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~a~~--m~~~aaNaLLK~LEEPp~~~~fiL~t~ 144 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAEA--MNRNAANALLKSLEEPSGDTVLLLISH 144 (328)
T ss_pred HHHHHhhccccCCCeEEEECChhh--CCHHHHHHHHHHHhCCCCCeEEEEEEC
Confidence 344444455677899999999998 677777777887766555555555443
No 291
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.20 E-value=0.033 Score=57.25 Aligned_cols=58 Identities=22% Similarity=0.192 Sum_probs=43.9
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhc
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERD 127 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~ 127 (319)
+..++|.|+.|||||.+...=+...+...+ ....+|+++.-|+.+|..+.+++...++
T Consensus 15 ~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~-v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 15 TGPCLVLAGAGSGKTRVITNKIAHLIRGCG-YQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHHhcC-CCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 467899999999999887665555443322 2244789999999999999998887654
No 292
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=95.20 E-value=0.094 Score=53.90 Aligned_cols=45 Identities=16% Similarity=0.048 Sum_probs=31.1
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHH
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIA 117 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q 117 (319)
-|+=|.-+||+|||.+|.-.|++.-.. -+..+.++++|+.+.-.-
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLhk~---YG~~KFIivVPs~AIkeG 119 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELHKK---YGLFKFIIVVPSLAIKEG 119 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHHHH---hCceeEEEEeccHHHHhh
Confidence 356778899999999998877653221 123466666799876544
No 293
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.19 E-value=0.074 Score=60.68 Aligned_cols=122 Identities=18% Similarity=0.175 Sum_probs=65.9
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccccc
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKEL 147 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~ 147 (319)
.++..+|.|+.|+|||+..-. +.+.+...+ ..|+.+.||-..|..+.+...... ..+. .+.....
T Consensus 445 ~~~v~ii~G~aGTGKTt~l~~-l~~~~~~~G----~~V~~lAPTgrAA~~L~e~~g~~A--------~Ti~--~~l~~l~ 509 (1960)
T TIGR02760 445 TKRFIIINGFGGTGSTEIAQL-LLHLASEQG----YEIQIITAGSLSAQELRQKIPRLA--------STFI--TWVKNLF 509 (1960)
T ss_pred CCCeEEEEECCCCCHHHHHHH-HHHHHHhcC----CeEEEEeCCHHHHHHHHHHhcchh--------hhHH--HHHHhhc
Confidence 457899999999999976533 333332222 377788899887766654322110 0000 0000000
Q ss_pred CCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEeccc
Q psy496 148 PRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSAT 215 (319)
Q Consensus 148 ~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT 215 (319)
.. ....|...++ .....+..-++|||||+-+ +....+..+++.... .+.|+|++.-+
T Consensus 510 ~~----~~~~tv~~fl---~~~~~l~~~~vlIVDEAsM--l~~~~~~~Ll~~a~~--~garvVlvGD~ 566 (1960)
T TIGR02760 510 ND----DQDHTVQGLL---DKSSPFSNKDIFVVDEANK--LSNNELLKLIDKAEQ--HNSKLILLNDS 566 (1960)
T ss_pred cc----ccchhHHHhh---cccCCCCCCCEEEEECCCC--CCHHHHHHHHHHHhh--cCCEEEEEcCh
Confidence 00 0011222222 2233356789999999998 555556666665533 25688877544
No 294
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=95.18 E-value=0.013 Score=53.08 Aligned_cols=43 Identities=21% Similarity=0.168 Sum_probs=29.9
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRIS 114 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~l 114 (319)
..+.+++++|+||||||+.. ..+++.+... ..+++++..+.|+
T Consensus 125 ~~~~~ili~G~tGSGKTT~l-~all~~i~~~----~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 125 RGRGNILISGPTGSGKTTLL-NALLEEIPPE----DERIVTIEDPPEL 167 (270)
T ss_dssp HTTEEEEEEESTTSSHHHHH-HHHHHHCHTT----TSEEEEEESSS-S
T ss_pred ccceEEEEECCCccccchHH-HHHhhhcccc----ccceEEeccccce
Confidence 46789999999999999877 4445544433 2377887766554
No 295
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.16 E-value=0.035 Score=54.76 Aligned_cols=48 Identities=23% Similarity=0.353 Sum_probs=30.2
Q ss_pred HHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEE
Q psy496 162 LPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLIL 211 (319)
Q Consensus 162 ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~ 211 (319)
+.+.....|.....+++||||+|. +..+..-.+++.+...++...+|+
T Consensus 107 I~~~~~~~P~~~~~KVvIIDEad~--Lt~~a~naLLk~LEepp~~~v~Il 154 (486)
T PRK14953 107 LRDAVSYTPIKGKYKVYIIDEAHM--LTKEAFNALLKTLEEPPPRTIFIL 154 (486)
T ss_pred HHHHHHhCcccCCeeEEEEEChhh--cCHHHHHHHHHHHhcCCCCeEEEE
Confidence 344445556678899999999997 445555555666555444443333
No 296
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.16 E-value=0.22 Score=41.73 Aligned_cols=20 Identities=25% Similarity=0.371 Sum_probs=15.8
Q ss_pred cEEEecCCCCCccchhhHHH
Q psy496 71 PSIIYTSTGCGKTTQVPQFI 90 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l~i 90 (319)
.+++.|++|||||+......
T Consensus 2 ~~~~~G~~G~GKTt~~~~la 21 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLA 21 (173)
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 36789999999998865543
No 297
>KOG0384|consensus
Probab=95.15 E-value=0.1 Score=55.52 Aligned_cols=143 Identities=15% Similarity=0.091 Sum_probs=71.6
Q ss_pred CCCcEEEecCCCCCccch---hhHHHHHHHHHhCCCCccEEEEecccHHHHHH--HHHHHHHHhccccCCCCceEEEEEe
Q psy496 68 ILSPSIIYTSTGCGKTTQ---VPQFILDDEIARNRGSECCIMVTQPRRISAIA--IAERVAQERDEQCGRPGSSVGYQIR 142 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~---~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q--~~~~~~~~~~~~~~~~g~~vg~~~~ 142 (319)
+++|+|+.=+-|=|||.. |+-.+++.....+ ..|++.|.--++.= -++.|. .+.. +.|.|...+-++.
T Consensus 388 ~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~g-----pflvvvplst~~~W~~ef~~w~-~mn~-i~y~g~~~sr~~i 460 (1373)
T KOG0384|consen 388 KRNNCILADEMGLGKTVQTITFLSYLFHSLQIHG-----PFLVVVPLSTITAWEREFETWT-DMNV-IVYHGNLESRQLI 460 (1373)
T ss_pred hcccceehhhcCCCcchHHHHHHHHHHHhhhccC-----CeEEEeehhhhHHHHHHHHHHh-hhce-eeeecchhHHHHH
Confidence 568899999999999965 4444444332222 23344475443221 122233 2221 1222333221111
Q ss_pred ------cccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchh-HHHHHHHhhhccccCceEEEeccc
Q psy496 143 ------LEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISD-FLLAILKDVTDKRKDLKLILMSAT 215 (319)
Q Consensus 143 ------~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~-~~~~~l~~~~~~~~~~qiv~lSAT 215 (319)
.......-+.+++++|.++++.--..-.. -...++++||||+. -+.+ .+...+..+.. + ..++++.|
T Consensus 461 ~~ye~~~~~~~~~lkf~~lltTye~~LkDk~~L~~-i~w~~~~vDeahrL-kN~~~~l~~~l~~f~~---~-~rllitgT 534 (1373)
T KOG0384|consen 461 RQYEFYHSSNTKKLKFNALLTTYEIVLKDKAELSK-IPWRYLLVDEAHRL-KNDESKLYESLNQFKM---N-HRLLITGT 534 (1373)
T ss_pred HHHHheecCCccccccceeehhhHHHhccHhhhcc-CCcceeeecHHhhc-CchHHHHHHHHHHhcc---c-ceeeecCC
Confidence 11111112467999999988654311111 14678999999972 2233 23333333322 3 34677888
Q ss_pred c---ChhhHhh
Q psy496 216 L---NAEKFSQ 223 (319)
Q Consensus 216 ~---~~~~l~~ 223 (319)
+ +.+.+..
T Consensus 535 PlQNsikEL~s 545 (1373)
T KOG0384|consen 535 PLQNSLKELWS 545 (1373)
T ss_pred CccccHHHHHH
Confidence 7 5666554
No 298
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=95.12 E-value=0.011 Score=55.36 Aligned_cols=44 Identities=23% Similarity=0.071 Sum_probs=30.6
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISA 115 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la 115 (319)
.....+++|+|+||||||+.. ..++..+-. ..+|+++.-+.|+.
T Consensus 157 v~~~~nili~G~tgSGKTTll-~aL~~~ip~-----~~ri~tiEd~~El~ 200 (332)
T PRK13900 157 VISKKNIIISGGTSTGKTTFT-NAALREIPA-----IERLITVEDAREIV 200 (332)
T ss_pred HHcCCcEEEECCCCCCHHHHH-HHHHhhCCC-----CCeEEEecCCCccc
Confidence 345689999999999999775 445544422 23788876666653
No 299
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.07 E-value=0.095 Score=49.18 Aligned_cols=49 Identities=18% Similarity=0.320 Sum_probs=30.1
Q ss_pred HHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEe
Q psy496 162 LPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILM 212 (319)
Q Consensus 162 ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~l 212 (319)
+.+.+...+...+.++|||||+|. +..+....+++.+...+++..+|+.
T Consensus 105 l~~~~~~~p~~~~~~vviidea~~--l~~~~~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 105 ILDNVKYAPSSGKYKVYIIDEVHM--LSKSAFNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred HHHHHhcCcccCCceEEEEeChhh--cCHHHHHHHHHHHhCCccceeEEEE
Confidence 444455556677889999999997 4444445555655444444444443
No 300
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.05 E-value=0.057 Score=47.84 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=22.2
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDD 93 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~ 93 (319)
.+.+..++|.|++|||||+.....+...
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 5667889999999999998866555543
No 301
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=95.03 E-value=0.11 Score=45.71 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=14.3
Q ss_pred CcEEEecCCCCCccchh
Q psy496 70 SPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~ 86 (319)
.+++++||+|+|||+.+
T Consensus 51 ~h~lf~GPPG~GKTTLA 67 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLA 67 (233)
T ss_dssp -EEEEESSTTSSHHHHH
T ss_pred ceEEEECCCccchhHHH
Confidence 57999999999999665
No 302
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=95.03 E-value=0.15 Score=51.37 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=21.2
Q ss_pred cEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEe
Q psy496 71 PSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVT 108 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~ 108 (319)
.++|+|++|+|||...- .+.+.+.... ...+++|+
T Consensus 316 pL~LyG~sGsGKTHLL~-AIa~~a~~~~--~g~~V~Yi 350 (617)
T PRK14086 316 PLFIYGESGLGKTHLLH-AIGHYARRLY--PGTRVRYV 350 (617)
T ss_pred cEEEECCCCCCHHHHHH-HHHHHHHHhC--CCCeEEEe
Confidence 48999999999996543 3333333221 12466664
No 303
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=95.03 E-value=0.027 Score=55.51 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=37.0
Q ss_pred HHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEeccccCh
Q psy496 162 LPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATLNA 218 (319)
Q Consensus 162 ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~~~ 218 (319)
+.+.....|.-.++++.||||+|+ +....+-++++.+..-++...+| =||-++
T Consensus 107 i~e~v~y~P~~~ryKVyiIDEvHM--LS~~afNALLKTLEEPP~hV~FI--lATTe~ 159 (515)
T COG2812 107 IIEKVNYAPSEGRYKVYIIDEVHM--LSKQAFNALLKTLEEPPSHVKFI--LATTEP 159 (515)
T ss_pred HHHHhccCCccccceEEEEecHHh--hhHHHHHHHhcccccCccCeEEE--EecCCc
Confidence 344445566778999999999998 77777888888877655554443 355533
No 304
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.02 E-value=0.13 Score=47.42 Aligned_cols=18 Identities=33% Similarity=0.305 Sum_probs=13.8
Q ss_pred CcEEEecCCCCCccchhh
Q psy496 70 SPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~ 87 (319)
..++++||+|+|||+..-
T Consensus 44 ~~lll~G~~G~GKT~la~ 61 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAK 61 (316)
T ss_pred eEEEeeCcCCCCHHHHHH
Confidence 345559999999997653
No 305
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.01 E-value=0.025 Score=52.25 Aligned_cols=46 Identities=17% Similarity=0.180 Sum_probs=31.7
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRIS 114 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~l 114 (319)
...+.+++|+|+||||||+.. ..++..+-.. .+..+++++..+.|+
T Consensus 129 v~~~~~ilI~G~tGSGKTTll-~al~~~i~~~--~~~~ri~tiEd~~El 174 (299)
T TIGR02782 129 VLARKNILVVGGTGSGKTTLA-NALLAEIAKN--DPTDRVVIIEDTREL 174 (299)
T ss_pred HHcCCeEEEECCCCCCHHHHH-HHHHHHhhcc--CCCceEEEECCchhh
Confidence 345678999999999999875 3344443221 123478888888886
No 306
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=94.85 E-value=0.12 Score=50.53 Aligned_cols=35 Identities=17% Similarity=0.266 Sum_probs=22.9
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEec
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQ 109 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~ 109 (319)
..++|+||+|+|||...- ++.+.+...+ .+++++.
T Consensus 142 npl~L~G~~G~GKTHLl~-Ai~~~l~~~~----~~v~yi~ 176 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQ-AAVHALRESG----GKILYVR 176 (445)
T ss_pred ceEEEEcCCCCCHHHHHH-HHHHHHHHcC----CCEEEee
Confidence 458999999999996543 4444443322 3667754
No 307
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.80 E-value=0.063 Score=49.24 Aligned_cols=125 Identities=13% Similarity=0.150 Sum_probs=59.5
Q ss_pred hHHHHHHhhhcCCCC--CcEEEecCCCCCccchhhHHHHHHHHH-hCCCCccEEEEe-cccHHHHHHHHHHHHHHhcccc
Q psy496 55 AIALINKCLTLSPIL--SPSIIYTSTGCGKTTQVPQFILDDEIA-RNRGSECCIMVT-QPRRISAIAIAERVAQERDEQC 130 (319)
Q Consensus 55 ~~~~~~~~l~~~~~~--~~vli~apTGSGKT~~~~l~il~~l~~-~~~~~~~~vl~~-~Ptr~la~q~~~~~~~~~~~~~ 130 (319)
++..-++++..-+.. .+++|+|+|+.|||..+-...-.+... ........|+++ .|...-....+..+-..++...
T Consensus 45 ~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~ 124 (302)
T PF05621_consen 45 ALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPY 124 (302)
T ss_pred HHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCccc
Confidence 333334555543322 479999999999998654433222111 111112234443 4555444445554544443221
Q ss_pred CCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccc--cc--cchhHHHHHHHhhhc
Q psy496 131 GRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHE--RS--MISDFLLAILKDVTD 202 (319)
Q Consensus 131 ~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~--~~--~~~~~~~~~l~~~~~ 202 (319)
. ..+..... -...+++++. -+++++||||+|. .| ....-++..++.+.+
T Consensus 125 -------~----~~~~~~~~--------~~~~~~llr~----~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~N 177 (302)
T PF05621_consen 125 -------R----PRDRVAKL--------EQQVLRLLRR----LGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGN 177 (302)
T ss_pred -------C----CCCCHHHH--------HHHHHHHHHH----cCCcEEEeechHHHhcccHHHHHHHHHHHHHHhh
Confidence 1 00000000 0112233322 4789999999997 12 122255566666654
No 308
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.78 E-value=0.15 Score=48.93 Aligned_cols=49 Identities=14% Similarity=0.190 Sum_probs=29.4
Q ss_pred HHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEec
Q psy496 163 PEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMS 213 (319)
Q Consensus 163 l~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lS 213 (319)
.+.....+.....+++||||+|. +.....-.+++.+...+++..+|+.+
T Consensus 106 ~~~~~~~p~~~~~kViiIDead~--m~~~aanaLLk~LEep~~~~~fIL~a 154 (394)
T PRK07940 106 VTIAARRPSTGRWRIVVIEDADR--LTERAANALLKAVEEPPPRTVWLLCA 154 (394)
T ss_pred HHHHHhCcccCCcEEEEEechhh--cCHHHHHHHHHHhhcCCCCCeEEEEE
Confidence 34444455567889999999998 45554455566555444444444433
No 309
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=94.76 E-value=0.057 Score=50.59 Aligned_cols=45 Identities=24% Similarity=0.225 Sum_probs=33.2
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISA 115 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la 115 (319)
-.-|.+.|.-|||||..++.+-+++....+. .-++++..|+....
T Consensus 245 I~lV~L~G~AGtGKTlLALaAgleqv~e~~~--y~KiiVtRp~vpvG 289 (436)
T COG1875 245 IDLVSLGGKAGTGKTLLALAAGLEQVLERKR--YRKIIVTRPTVPVG 289 (436)
T ss_pred CCeEEeeccCCccHhHHHHHHHHHHHHHHhh--hceEEEecCCcCcc
Confidence 3568889999999998887777777655432 34788888875543
No 310
>KOG0780|consensus
Probab=94.75 E-value=0.2 Score=47.28 Aligned_cols=133 Identities=16% Similarity=0.224 Sum_probs=83.0
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccCC
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELPR 149 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~~ 149 (319)
.++++.|=-|||||+....... +.+.++..+..+|.-..|+-|.+..+..+...+..+ +| .+ ...++
T Consensus 102 sVimfVGLqG~GKTTtc~KlA~---y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~--yg-------sy-te~dp 168 (483)
T KOG0780|consen 102 SVIMFVGLQGSGKTTTCTKLAY---YYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPF--YG-------SY-TEADP 168 (483)
T ss_pred cEEEEEeccCCCcceeHHHHHH---HHHhcCCceeEEeecccccchHHHHHHHhHhhCCee--Ee-------cc-cccch
Confidence 4677899999999988765443 233456677888888899999888777766543322 01 00 00111
Q ss_pred CCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc--ChhhHhhhh
Q psy496 150 KRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL--NAEKFSQFF 225 (319)
Q Consensus 150 ~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~l 225 (319)
+.|+.-| ++..+. .++++||+|-.-++....+++.+.........|+.-++.+-|++ ..+..++-|
T Consensus 169 ----v~ia~eg--v~~fKk----e~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiGQaae~Qa~aF 236 (483)
T KOG0780|consen 169 ----VKIASEG--VDRFKK----ENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIGQAAEAQARAF 236 (483)
T ss_pred ----HHHHHHH--HHHHHh----cCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEeccccHhHHHHHHHH
Confidence 1122222 222222 57899999999875455556666655555577887777888888 666666555
No 311
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=94.74 E-value=0.04 Score=49.39 Aligned_cols=81 Identities=20% Similarity=0.298 Sum_probs=49.5
Q ss_pred ccEEEEecccHHHHHHHHHHHHHHhcc--ccCCCCceEEEEEecccc---cCCCCceEEEECchHHHHHHhcCCC-CCCc
Q psy496 102 ECCIMVTQPRRISAIAIAERVAQERDE--QCGRPGSSVGYQIRLEKE---LPRKRGSILYCTAGILPEVMQSDPI-LSGV 175 (319)
Q Consensus 102 ~~~vl~~~Ptr~la~q~~~~~~~~~~~--~~~~~g~~vg~~~~~~~~---~~~~~~~Iiv~Tpg~ll~~l~~~~~-l~~v 175 (319)
.+.+++++..-.=|..+.+.+..+.+. .+ +....-.+..++. ....+.+|.||||||+..++..+.. ++++
T Consensus 126 sP~~lvvs~SalRa~dl~R~l~~~~~k~~~v---~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~l 202 (252)
T PF14617_consen 126 SPHVLVVSSSALRAADLIRALRSFKGKDCKV---AKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSNL 202 (252)
T ss_pred CCEEEEEcchHHHHHHHHHHHHhhccCCchH---HHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCcccC
Confidence 456666666655566777766655321 11 1111112222211 1123578999999999999966654 8999
Q ss_pred cEEEEecccc
Q psy496 176 SHIVMDEIHE 185 (319)
Q Consensus 176 ~~vViDEah~ 185 (319)
.+||||--|.
T Consensus 203 ~~ivlD~s~~ 212 (252)
T PF14617_consen 203 KRIVLDWSYL 212 (252)
T ss_pred eEEEEcCCcc
Confidence 9999998663
No 312
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=94.71 E-value=0.2 Score=46.79 Aligned_cols=51 Identities=14% Similarity=0.223 Sum_probs=36.9
Q ss_pred HHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecc
Q psy496 162 LPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSA 214 (319)
Q Consensus 162 ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSA 214 (319)
+.+.+...+.-...+++|||++|. +.....-++++.+...+++..+++.|.
T Consensus 95 l~~~~~~~~~~g~~KV~iI~~a~~--m~~~AaNaLLKtLEEPp~~~~fiL~t~ 145 (325)
T PRK06871 95 INEKVSQHAQQGGNKVVYIQGAER--LTEAAANALLKTLEEPRPNTYFLLQAD 145 (325)
T ss_pred HHHHHhhccccCCceEEEEechhh--hCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 344445556677899999999998 667777788888877666666666554
No 313
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.71 E-value=0.27 Score=49.41 Aligned_cols=43 Identities=21% Similarity=0.310 Sum_probs=27.6
Q ss_pred hcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEE
Q psy496 167 QSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLIL 211 (319)
Q Consensus 167 ~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~ 211 (319)
...+...+.+++||||+|. +..+..-.+++.+...++...+|+
T Consensus 112 ~~~p~~~~~KVvIIDEa~~--Ls~~a~naLLK~LEepp~~~vfI~ 154 (563)
T PRK06647 112 MFPPASSRYRVYIIDEVHM--LSNSAFNALLKTIEEPPPYIVFIF 154 (563)
T ss_pred HhchhcCCCEEEEEEChhh--cCHHHHHHHHHhhccCCCCEEEEE
Confidence 4455578899999999998 455555556666554444443433
No 314
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=94.70 E-value=0.2 Score=51.85 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=16.9
Q ss_pred CCCcEEEecCCCCCccchhhH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l 88 (319)
...+++++||+|+|||+.+-.
T Consensus 51 ~~~slLL~GPpGtGKTTLA~a 71 (725)
T PRK13341 51 RVGSLILYGPPGVGKTTLARI 71 (725)
T ss_pred CCceEEEECCCCCCHHHHHHH
Confidence 345799999999999977643
No 315
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.65 E-value=0.28 Score=48.83 Aligned_cols=136 Identities=18% Similarity=0.150 Sum_probs=64.4
Q ss_pred CCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHH---HHH--HHhccccCCCCceEEEE-EecccccCCC
Q psy496 77 STGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAE---RVA--QERDEQCGRPGSSVGYQ-IRLEKELPRK 150 (319)
Q Consensus 77 pTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~---~~~--~~~~~~~~~~g~~vg~~-~~~~~~~~~~ 150 (319)
.||||||....-.|++.. ..+ .+--+.++.-+..|-.-..+ .++ -++...+.+.+..+... +..-+ .-++
T Consensus 5 atgsgkt~~ma~lil~~y-~kg--yr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fs-ehnd 80 (812)
T COG3421 5 ATGSGKTLVMAGLILECY-KKG--YRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFS-EHND 80 (812)
T ss_pred ccCCChhhHHHHHHHHHH-Hhc--hhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccC-ccCC
Confidence 399999988777776543 322 22233333333332211111 011 11222222333333311 11111 1224
Q ss_pred CceEEEECchHHHHHH-hcC--C----CCCCccEE-EEeccccccc------chh-----HHHHHHHhhhccccCceEEE
Q psy496 151 RGSILYCTAGILPEVM-QSD--P----ILSGVSHI-VMDEIHERSM------ISD-----FLLAILKDVTDKRKDLKLIL 211 (319)
Q Consensus 151 ~~~Iiv~Tpg~ll~~l-~~~--~----~l~~v~~v-ViDEah~~~~------~~~-----~~~~~l~~~~~~~~~~qiv~ 211 (319)
...|.++|-+.|...+ ..+ . +|.+..+| +-||+|.... ..+ .+.+.+......+++--++.
T Consensus 81 ~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~le 160 (812)
T COG3421 81 AIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLLE 160 (812)
T ss_pred ceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceeeh
Confidence 4579999998886666 222 1 25555655 6799996111 001 22222232333445655677
Q ss_pred ecccc
Q psy496 212 MSATL 216 (319)
Q Consensus 212 lSAT~ 216 (319)
+|||.
T Consensus 161 f~at~ 165 (812)
T COG3421 161 FSATI 165 (812)
T ss_pred hhhcC
Confidence 89998
No 316
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.64 E-value=0.29 Score=41.98 Aligned_cols=89 Identities=17% Similarity=0.125 Sum_probs=48.4
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccCC
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELPR 149 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~~ 149 (319)
+-.+++||-.||||+-.+.-+-+....+. ++++..|. +-.++ + ...+. .+.+..
T Consensus 5 ~l~~i~gpM~SGKT~eLl~r~~~~~~~g~-----~v~vfkp~------iD~R~----~------~~~V~--Sr~G~~--- 58 (201)
T COG1435 5 WLEFIYGPMFSGKTEELLRRARRYKEAGM-----KVLVFKPA------IDTRY----G------VGKVS--SRIGLS--- 58 (201)
T ss_pred EEEEEEccCcCcchHHHHHHHHHHHHcCC-----eEEEEecc------ccccc----c------cceee--eccCCc---
Confidence 45688999999999965554433323222 55553343 11111 0 11111 111111
Q ss_pred CCceEEEECchHHHHHHhcCCCCCCccEEEEecccc
Q psy496 150 KRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHE 185 (319)
Q Consensus 150 ~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~ 185 (319)
..-+.+-.+..+.+.+........+++|.||||+-
T Consensus 59 -~~A~~i~~~~~i~~~i~~~~~~~~~~~v~IDEaQF 93 (201)
T COG1435 59 -SEAVVIPSDTDIFDEIAALHEKPPVDCVLIDEAQF 93 (201)
T ss_pred -ccceecCChHHHHHHHHhcccCCCcCEEEEehhHh
Confidence 11256667777777775443333489999999996
No 317
>KOG0953|consensus
Probab=94.61 E-value=0.049 Score=53.40 Aligned_cols=94 Identities=19% Similarity=0.221 Sum_probs=55.3
Q ss_pred cEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccCCC
Q psy496 71 PSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELPRK 150 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~~~ 150 (319)
.++=+|||-||||.-+ ++++.... .-++.-|.|.||..+++++.+. +..+ ....|-..+..... ..
T Consensus 193 Ii~H~GPTNSGKTy~A----Lqrl~~ak-----sGvycGPLrLLA~EV~~r~na~-gipC---dL~TGeE~~~~~~~-~~ 258 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRA----LQRLKSAK-----SGVYCGPLRLLAHEVYDRLNAL-GIPC---DLLTGEERRFVLDN-GN 258 (700)
T ss_pred EEEEeCCCCCchhHHH----HHHHhhhc-----cceecchHHHHHHHHHHHhhhc-CCCc---cccccceeeecCCC-CC
Confidence 3555999999999664 45555544 3455569999999999988764 3333 33444333321111 11
Q ss_pred CceEEEECchHHHHHHhcCCCCCCccEEEEecccc
Q psy496 151 RGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHE 185 (319)
Q Consensus 151 ~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~ 185 (319)
.++.+-+|-+++. .-..+++.||||+.+
T Consensus 259 ~a~hvScTVEM~s-------v~~~yeVAViDEIQm 286 (700)
T KOG0953|consen 259 PAQHVSCTVEMVS-------VNTPYEVAVIDEIQM 286 (700)
T ss_pred cccceEEEEEEee-------cCCceEEEEehhHHh
Confidence 2345555555321 123577778888775
No 318
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=94.61 E-value=0.044 Score=48.72 Aligned_cols=54 Identities=15% Similarity=0.134 Sum_probs=35.4
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
=.+.+..++|.|++|||||+.....+.+.+.... .++++. +.+-..++.+++..
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge-----~~lyvs-~ee~~~~i~~~~~~ 70 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGE-----PGIYVA-LEEHPVQVRRNMAQ 70 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-----cEEEEE-eeCCHHHHHHHHHH
Confidence 3567889999999999999988777776653322 344443 34444555554443
No 319
>KOG2028|consensus
Probab=94.61 E-value=0.074 Score=49.89 Aligned_cols=52 Identities=19% Similarity=0.303 Sum_probs=29.4
Q ss_pred cEEEEecccccc-cchhHHHHHHHhhhccccCceEEEecccc-Chh--hHhhhhCCCCEEEeC
Q psy496 176 SHIVMDEIHERS-MISDFLLAILKDVTDKRKDLKLILMSATL-NAE--KFSQFFGGAPILHIP 234 (319)
Q Consensus 176 ~~vViDEah~~~-~~~~~~~~~l~~~~~~~~~~qiv~lSAT~-~~~--~l~~~l~~~~~i~~~ 234 (319)
..+.|||+|++. ...|.++-.++ +--+++..||- |+. .....+..|.++..+
T Consensus 224 TilFiDEiHRFNksQQD~fLP~VE-------~G~I~lIGATTENPSFqln~aLlSRC~VfvLe 279 (554)
T KOG2028|consen 224 TILFIDEIHRFNKSQQDTFLPHVE-------NGDITLIGATTENPSFQLNAALLSRCRVFVLE 279 (554)
T ss_pred eEEEeHHhhhhhhhhhhcccceec-------cCceEEEecccCCCccchhHHHHhccceeEec
Confidence 468899999832 22222222211 33577888888 553 334456666666554
No 320
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.60 E-value=0.058 Score=54.72 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=29.2
Q ss_pred HhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEE
Q psy496 166 MQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLIL 211 (319)
Q Consensus 166 l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~ 211 (319)
+...+.+.+.+++||||+|. +..+..-.+++.+...++...+|+
T Consensus 113 ~~~~P~~~~~KVvIIdea~~--Ls~~a~naLLK~LEepp~~tifIL 156 (614)
T PRK14971 113 VRIPPQIGKYKIYIIDEVHM--LSQAAFNAFLKTLEEPPSYAIFIL 156 (614)
T ss_pred HhhCcccCCcEEEEEECccc--CCHHHHHHHHHHHhCCCCCeEEEE
Confidence 34556688999999999998 455555556666555444444444
No 321
>PF12846 AAA_10: AAA-like domain
Probab=94.53 E-value=0.04 Score=49.97 Aligned_cols=43 Identities=26% Similarity=0.368 Sum_probs=30.4
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAI 116 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~ 116 (319)
|.+++|.|+||||||+.... ++......+ ..++++-|..+...
T Consensus 1 n~h~~i~G~tGsGKT~~~~~-l~~~~~~~g----~~~~i~D~~g~~~~ 43 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKN-LLEQLIRRG----PRVVIFDPKGDYSP 43 (304)
T ss_pred CCeEEEECCCCCcHHHHHHH-HHHHHHHcC----CCEEEEcCCchHHH
Confidence 56899999999999988774 444444433 36777778766544
No 322
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=94.53 E-value=0.25 Score=46.01 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=37.7
Q ss_pred HHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecc
Q psy496 161 ILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSA 214 (319)
Q Consensus 161 ~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSA 214 (319)
.+.+.+...+.....+++||||+|. +.....-+++|.+...+++..+|++|.
T Consensus 100 ~l~~~~~~~p~~g~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~~~fiL~~~ 151 (319)
T PRK08769 100 EISQKLALTPQYGIAQVVIVDPADA--INRAACNALLKTLEEPSPGRYLWLISA 151 (319)
T ss_pred HHHHHHhhCcccCCcEEEEeccHhh--hCHHHHHHHHHHhhCCCCCCeEEEEEC
Confidence 3444454556667899999999998 677777778887777666666776655
No 323
>KOG0392|consensus
Probab=94.51 E-value=0.19 Score=53.64 Aligned_cols=140 Identities=17% Similarity=0.107 Sum_probs=76.3
Q ss_pred cEEEecCCCCCccchhhHHHHHHHHHhCC----CCccEEEEecccHHHHHHHHHHHHHHhcc--ccCCCCceEEEEEecc
Q psy496 71 PSIIYTSTGCGKTTQVPQFILDDEIARNR----GSECCIMVTQPRRISAIAIAERVAQERDE--QCGRPGSSVGYQIRLE 144 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l~il~~l~~~~~----~~~~~vl~~~Ptr~la~q~~~~~~~~~~~--~~~~~g~~vg~~~~~~ 144 (319)
+=++|-.-|=|||++..-.+....+.++. ......++++|. .|+-.....+.+++.. .+.|.|... .+..
T Consensus 996 HGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~kf~pfL~v~~yvg~p~---~r~~ 1071 (1549)
T KOG0392|consen 996 HGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKKFFPFLKVLQYVGPPA---ERRE 1071 (1549)
T ss_pred cceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHHhcchhhhhhhcCChH---HHHH
Confidence 46788889999999876666555544311 112235555585 4555555666666443 111112221 2222
Q ss_pred cccCCCCceEEEECchHHHHHH--hcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc---Chh
Q psy496 145 KELPRKRGSILYCTAGILPEVM--QSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL---NAE 219 (319)
Q Consensus 145 ~~~~~~~~~Iiv~Tpg~ll~~l--~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~---~~~ 219 (319)
.+...++.+|+|++++.+.+-. ..+ .++.+.|+||-|-.--..--+-..++.+. .+ ..+.+|.|+ |+.
T Consensus 1072 lR~q~~~~~iiVtSYDv~RnD~d~l~~---~~wNYcVLDEGHVikN~ktkl~kavkqL~---a~-hRLILSGTPIQNnvl 1144 (1549)
T KOG0392|consen 1072 LRDQYKNANIIVTSYDVVRNDVDYLIK---IDWNYCVLDEGHVIKNSKTKLTKAVKQLR---AN-HRLILSGTPIQNNVL 1144 (1549)
T ss_pred HHhhccccceEEeeHHHHHHHHHHHHh---cccceEEecCcceecchHHHHHHHHHHHh---hc-ceEEeeCCCcccCHH
Confidence 2222245789999999886433 111 35779999999952111112223333333 34 456789998 554
Q ss_pred hH
Q psy496 220 KF 221 (319)
Q Consensus 220 ~l 221 (319)
++
T Consensus 1145 eL 1146 (1549)
T KOG0392|consen 1145 EL 1146 (1549)
T ss_pred HH
Confidence 43
No 324
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=94.51 E-value=0.065 Score=55.57 Aligned_cols=58 Identities=22% Similarity=0.197 Sum_probs=43.5
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhc
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERD 127 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~ 127 (319)
..+++|.|..|||||.+...=+...+...+ -....|+++.-|+.+|..+.+++.+..+
T Consensus 22 ~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~-v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 22 LGNMLVLAGAGSGKTRVLVHRIAWLMQVEN-ASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHHcCC-CChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 367999999999999887555544332222 2345799999999999999999988765
No 325
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.46 E-value=0.14 Score=56.97 Aligned_cols=49 Identities=14% Similarity=0.052 Sum_probs=31.5
Q ss_pred CCCcEEEecCCCCCccchhhH--HHHHHHHHhCCCCccEEEEecccHHHHHHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQ--FILDDEIARNRGSECCIMVTQPRRISAIAIA 119 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l--~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~ 119 (319)
.++.++|+|..|+|||+.+-. -++..+... ....|+.+.||--.|..+.
T Consensus 851 ~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~e~---~g~~V~glAPTgkAa~~L~ 901 (1623)
T PRK14712 851 SDRFTVVQGYAGVGKTTQFRAVMSAVNMLPES---ERPRVVGLGPTHRAVGEMR 901 (1623)
T ss_pred CCceEEEEeCCCCCHHHHHHHHHHHHHHHhhc---cCceEEEEechHHHHHHHH
Confidence 357899999999999987532 222222221 1246777789977776653
No 326
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=94.43 E-value=0.072 Score=54.65 Aligned_cols=58 Identities=21% Similarity=0.174 Sum_probs=44.3
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhc
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERD 127 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~ 127 (319)
..+++|.|+.|||||.....-+...+...+. ....|+++..|+..|.++.+++.+.++
T Consensus 14 ~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~-~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 14 TGPCLVLAGAGSGKTRVITNKIAYLIQNCGY-KARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHHhcCC-CHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 4679999999999999887666655533222 234788888999999999998887654
No 327
>KOG1805|consensus
Probab=94.36 E-value=0.061 Score=55.88 Aligned_cols=50 Identities=20% Similarity=0.208 Sum_probs=35.9
Q ss_pred cEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHH
Q psy496 71 PSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQE 125 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~ 125 (319)
-.+|-|=+|+|||+.....+ +.+...++ +||.++=|..++..+.-++...
T Consensus 687 y~LI~GMPGTGKTTtI~~LI-kiL~~~gk----kVLLtsyThsAVDNILiKL~~~ 736 (1100)
T KOG1805|consen 687 YALILGMPGTGKTTTISLLI-KILVALGK----KVLLTSYTHSAVDNILIKLKGF 736 (1100)
T ss_pred hheeecCCCCCchhhHHHHH-HHHHHcCC----eEEEEehhhHHHHHHHHHHhcc
Confidence 36788889999998876543 44444442 7888888888888887666543
No 328
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=94.35 E-value=0.066 Score=55.47 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=43.7
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhc
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERD 127 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~ 127 (319)
+..++|.|..|||||.+...=+...+...+ -...+|+++.-|+.+|..+.+++.+.++
T Consensus 17 ~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~-v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 17 PGNLLVLAGAGSGKTRVLTHRIAWLLSVEN-ASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred CCCEEEEecCCCCHHHHHHHHHHHHHHcCC-CCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 467999999999999887555544333222 2345889989999999999999888765
No 329
>PRK04328 hypothetical protein; Provisional
Probab=94.32 E-value=0.13 Score=46.09 Aligned_cols=31 Identities=19% Similarity=0.258 Sum_probs=25.0
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIA 96 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~ 96 (319)
.+.+..++|.|++|||||+.....+.+.+..
T Consensus 20 ip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ 50 (249)
T PRK04328 20 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQM 50 (249)
T ss_pred CcCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 4678889999999999998887777665543
No 330
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=94.29 E-value=0.18 Score=56.56 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=31.1
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAI 118 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~ 118 (319)
++.++|+|..|+|||+..- .+.+.+..-.......|+.+.||--.|..+
T Consensus 984 dr~~~I~G~AGTGKTT~l~-~v~~~~~~l~~~~~~~V~glAPTgrAAk~L 1032 (1747)
T PRK13709 984 DRFTVVQGYAGVGKTTQFR-AVMSAVNTLPESERPRVVGLGPTHRAVGEM 1032 (1747)
T ss_pred CcEEEEEeCCCCCHHHHHH-HHHHHHHHhhcccCceEEEECCcHHHHHHH
Confidence 4689999999999997753 233332211111134677788997776654
No 331
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.27 E-value=0.32 Score=46.23 Aligned_cols=27 Identities=37% Similarity=0.518 Sum_probs=20.0
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHh
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIAR 97 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~ 97 (319)
.|++|.|+||+|||...-. +++.+...
T Consensus 43 ~n~~iyG~~GTGKT~~~~~-v~~~l~~~ 69 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF-VMEELEES 69 (366)
T ss_pred ccEEEECCCCCCHhHHHHH-HHHHHHhh
Confidence 4699999999999977544 55665544
No 332
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.25 E-value=0.29 Score=49.71 Aligned_cols=45 Identities=18% Similarity=0.279 Sum_probs=29.4
Q ss_pred hcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEec
Q psy496 167 QSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMS 213 (319)
Q Consensus 167 ~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lS 213 (319)
...+.+.+.+++||||+|. +.....-.+++.+...++...+|+++
T Consensus 120 ~~~P~~~~~KVvIIdEad~--Lt~~a~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 120 RYGPQKGRYRVYIIDEVHM--LSTAAFNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred HhhhhcCCCEEEEEeChhh--cCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 4446678899999999998 44444555666655544454555544
No 333
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.24 E-value=0.055 Score=45.68 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=28.6
Q ss_pred cEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 71 PSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
.++|.||+|||||+.....+...+..+. .++++. +.+...++.+++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~-----~v~~~s-~e~~~~~~~~~~~ 47 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGE-----PGLYVT-LEESPEELIENAE 47 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCC-----cEEEEE-CCCCHHHHHHHHH
Confidence 3789999999999887776666543222 344442 3344455544443
No 334
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=94.18 E-value=0.14 Score=49.70 Aligned_cols=27 Identities=26% Similarity=0.213 Sum_probs=21.1
Q ss_pred HhhhcCCCCCcEEEecCCCCCccchhh
Q psy496 61 KCLTLSPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 61 ~~l~~~~~~~~vli~apTGSGKT~~~~ 87 (319)
.++.....+++++++||+|+|||..+-
T Consensus 186 ~l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 186 TILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 444455567899999999999997764
No 335
>PRK10263 DNA translocase FtsK; Provisional
Probab=94.13 E-value=0.44 Score=51.66 Aligned_cols=40 Identities=23% Similarity=0.300 Sum_probs=27.6
Q ss_pred CCCcEEEeCCccccccc--cc--hHhHHHHhHhhccccCCCCCC
Q psy496 275 GGAPILHIPGFTYPVQE--YY--LEDVLNMTRTLKRSETQQYPN 314 (319)
Q Consensus 275 ~g~~LVFlp~R~~~v~~--~~--~~~~~~~~~~~~~~~~~~~~~ 314 (319)
.|.+|..-++...|+++ .| -++|...++.++..+.-.|-+
T Consensus 1227 ~GDmL~~~~g~~~p~RvqgafvsD~Ei~~vv~~~k~~~~p~y~~ 1270 (1355)
T PRK10263 1227 MGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVD 1270 (1355)
T ss_pred CccEEEecCCCCceeEEEeccCCHHHHHHHHHHHHhcCCCchhh
Confidence 56666655566666655 55 577888888888877766644
No 336
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.13 E-value=0.051 Score=49.68 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=25.6
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEe
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVT 108 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~ 108 (319)
...-++|+||||||||+... .+++.+.... ...|+.+
T Consensus 124 ~~GLILVTGpTGSGKSTTlA-amId~iN~~~---~~HIlTI 160 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLA-AMIDYINKHK---AKHILTI 160 (353)
T ss_pred CCceEEEeCCCCCcHHHHHH-HHHHHHhccC---CcceEEe
Confidence 45779999999999998753 4666665543 2355554
No 337
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=94.10 E-value=0.15 Score=50.84 Aligned_cols=26 Identities=23% Similarity=0.169 Sum_probs=21.3
Q ss_pred HhhhcCCCCCcEEEecCCCCCccchh
Q psy496 61 KCLTLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 61 ~~l~~~~~~~~vli~apTGSGKT~~~ 86 (319)
++=...+.++.+.|+||+|||||+.+
T Consensus 353 ~isl~i~~G~~vaIvG~SGsGKSTLl 378 (529)
T TIGR02868 353 GVSLDLPPGERVAILGPSGSGKSTLL 378 (529)
T ss_pred cceEEEcCCCEEEEECCCCCCHHHHH
Confidence 44455678999999999999999765
No 338
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.10 E-value=0.16 Score=58.17 Aligned_cols=48 Identities=15% Similarity=0.132 Sum_probs=31.7
Q ss_pred CCCcEEEecCCCCCccchhh---HHHHHHHHHhCCCCccEEEEecccHHHHHHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVP---QFILDDEIARNRGSECCIMVTQPRRISAIAIA 119 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~---l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~ 119 (319)
.+..++|.|+.|+|||+..- -++.+. +... ...|+.+.||-..|..+.
T Consensus 1035 ~~~~~~i~G~AGtGKTt~l~~~~~~i~~~-~~~~---g~~v~glApT~~Aa~~L~ 1085 (1960)
T TIGR02760 1035 KDRFVAVQGLAGVGKTTMLESRYKPVLQA-FESE---QLQVIGLAPTHEAVGELK 1085 (1960)
T ss_pred CCcEEEEEeCCCCCHHHhHHHHHHHHHHH-HHhc---CCeEEEEeChHHHHHHHH
Confidence 34678999999999998762 223332 2222 246777789977776663
No 339
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.10 E-value=0.092 Score=45.95 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=29.1
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHHHHhC-CCCccEEEEecc
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDEIARN-RGSECCIMVTQP 110 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~-~~~~~~vl~~~P 110 (319)
-.+.++.+.|.|++|||||......+........ .+....++++..
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~ 61 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDT 61 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEec
Confidence 3566788999999999999877665554432220 011235666544
No 340
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=94.05 E-value=0.3 Score=45.37 Aligned_cols=58 Identities=17% Similarity=0.232 Sum_probs=38.9
Q ss_pred EEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecc
Q psy496 154 ILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSA 214 (319)
Q Consensus 154 Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSA 214 (319)
|-|-.-..+.+.+...+.....+++|||++|. +..+..-.+++.+...+ +..+|+++.
T Consensus 104 I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~--m~~~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPLEAPRKVVVIEDAET--MNEAAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred CcHHHHHHHHHHHccCcccCCceEEEEEchhh--cCHHHHHHHHHHHhCCC-CCeEEEEEC
Confidence 33333344566666667778999999999998 56666666777666544 656666554
No 341
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=94.02 E-value=0.079 Score=52.29 Aligned_cols=52 Identities=17% Similarity=0.086 Sum_probs=34.9
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
.+.+..++|.||+|+|||+..+..+.+.+.... +++|+ -..|-..|+.++..
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge-----~~~y~-s~eEs~~~i~~~~~ 311 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENACANKE-----RAILF-AYEESRAQLLRNAY 311 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCC-----eEEEE-EeeCCHHHHHHHHH
Confidence 567788999999999999988777666543322 44443 34455566666554
No 342
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=93.99 E-value=0.059 Score=47.35 Aligned_cols=34 Identities=29% Similarity=0.255 Sum_probs=27.6
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHHHH-hC
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDEIA-RN 98 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l~~-~~ 98 (319)
=.+.+..++|.|++|||||......+.+.+.. ..
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge 49 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGE 49 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT-
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCC
Confidence 35678899999999999999888888877766 44
No 343
>CHL00095 clpC Clp protease ATP binding subunit
Probab=93.96 E-value=0.18 Score=53.19 Aligned_cols=40 Identities=20% Similarity=0.212 Sum_probs=24.4
Q ss_pred cccccchhhHHHHHHh--hhcCCCC---CcEEEecCCCCCccchh
Q psy496 47 VTQPRRISAIALINKC--LTLSPIL---SPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 47 ~~Q~~~ip~~~~~~~~--l~~~~~~---~~vli~apTGSGKT~~~ 86 (319)
.-|..++..+...-.. .+....+ ..++++||||+|||..+
T Consensus 512 ~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA 556 (821)
T CHL00095 512 IGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELT 556 (821)
T ss_pred cChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHH
Confidence 5577887776542211 1111222 35789999999999665
No 344
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.93 E-value=0.041 Score=51.27 Aligned_cols=47 Identities=17% Similarity=0.223 Sum_probs=31.4
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRIS 114 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~l 114 (319)
+...+.+++|+|+||||||+.. ..++..+... .+..+++++..+.|+
T Consensus 144 ~v~~~~~ilI~G~tGSGKTTll-~aL~~~~~~~--~~~~rivtIEd~~El 190 (319)
T PRK13894 144 AVRAHRNILVIGGTGSGKTTLV-NAIINEMVIQ--DPTERVFIIEDTGEI 190 (319)
T ss_pred HHHcCCeEEEECCCCCCHHHHH-HHHHHhhhhc--CCCceEEEEcCCCcc
Confidence 3456789999999999999554 4455443211 123478887777765
No 345
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=93.89 E-value=0.059 Score=52.79 Aligned_cols=48 Identities=23% Similarity=0.157 Sum_probs=36.4
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
.++++.||||||||..+.+|.+- ... ..++++-|.-|+....+..+.+
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll---~~~----~s~iV~D~KgEl~~~t~~~r~~ 92 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLL---NYP----GSMIVTDPKGELYEKTAGYRKK 92 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHH---hcc----CCEEEEECCCcHHHHHHHHHHH
Confidence 57999999999999999888652 211 1678888999988776664444
No 346
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.88 E-value=0.31 Score=45.64 Aligned_cols=46 Identities=13% Similarity=0.196 Sum_probs=32.1
Q ss_pred HhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEec
Q psy496 166 MQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMS 213 (319)
Q Consensus 166 l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lS 213 (319)
+...+...+.+++||||+|. +..+..-.+++.+...+++..+|+.+
T Consensus 102 ~~~~~~~~~~kvviI~~a~~--~~~~a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 102 FSKSGVESNKKVYIIEHADK--MTASAANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred HhhCCcccCceEEEeehHhh--hCHHHHHHHHHHhcCCCCCceEEEEe
Confidence 33445567899999999998 56666667777776655566666544
No 347
>KOG2228|consensus
Probab=93.87 E-value=1.3 Score=41.29 Aligned_cols=129 Identities=18% Similarity=0.184 Sum_probs=64.3
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEeccc----HHHHHHHHHHHHHHhccccCCCCceEEEEEec
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPR----RISAIAIAERVAQERDEQCGRPGSSVGYQIRL 143 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Pt----r~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~ 143 (319)
+...+++.||-|||||...--.+.. .. ..+.+..++=+.++ +.+...+.++++..+... +...|
T Consensus 48 EsnsviiigprgsgkT~li~~~Ls~-~q--~~~E~~l~v~Lng~~~~dk~al~~I~rql~~e~~~~----~k~~g----- 115 (408)
T KOG2228|consen 48 ESNSVIIIGPRGSGKTILIDTRLSD-IQ--ENGENFLLVRLNGELQTDKIALKGITRQLALELNRI----VKSFG----- 115 (408)
T ss_pred CCCceEEEccCCCCceEeeHHHHhh-HH--hcCCeEEEEEECccchhhHHHHHHHHHHHHHHHhhh----heeec-----
Confidence 3457999999999999766554444 21 22223344444443 223344555555443321 11111
Q ss_pred ccccCCCCceEEEECchHHHHHHhcCCCCCCc-cEEEEecccccccchh--HHHHHHHhhhccccCceEEEeccccCh
Q psy496 144 EKELPRKRGSILYCTAGILPEVMQSDPILSGV-SHIVMDEIHERSMISD--FLLAILKDVTDKRKDLKLILMSATLNA 218 (319)
Q Consensus 144 ~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v-~~vViDEah~~~~~~~--~~~~~l~~~~~~~~~~qiv~lSAT~~~ 218 (319)
.-.. +-..++..+..+..-... =.+|+||+|....+.. .+.............+-+++++.-+|.
T Consensus 116 -sfte---------~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~ 183 (408)
T KOG2228|consen 116 -SFTE---------NLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDI 183 (408)
T ss_pred -ccch---------hHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccH
Confidence 0000 113455555444433344 4578899996222221 333444444433445567788777743
No 348
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=93.87 E-value=0.06 Score=46.50 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=23.2
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecc
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQP 110 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~P 110 (319)
..++|+||||||||+.. ..++..+.... ..+++.+.-
T Consensus 2 GlilI~GptGSGKTTll-~~ll~~~~~~~---~~~i~t~e~ 38 (198)
T cd01131 2 GLVLVTGPTGSGKSTTL-AAMIDYINKNK---THHILTIED 38 (198)
T ss_pred cEEEEECCCCCCHHHHH-HHHHHHhhhcC---CcEEEEEcC
Confidence 35889999999999886 33444443322 235665443
No 349
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=93.83 E-value=0.38 Score=44.78 Aligned_cols=52 Identities=17% Similarity=0.245 Sum_probs=36.3
Q ss_pred HHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEeccc
Q psy496 162 LPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSAT 215 (319)
Q Consensus 162 ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT 215 (319)
+.+.+...+.....+++|||++|. +.....-++++.+...+++..+|+.|..
T Consensus 96 l~~~~~~~~~~~~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 147 (319)
T PRK06090 96 CNRLAQESSQLNGYRLFVIEPADA--MNESASNALLKTLEEPAPNCLFLLVTHN 147 (319)
T ss_pred HHHHHhhCcccCCceEEEecchhh--hCHHHHHHHHHHhcCCCCCeEEEEEECC
Confidence 334444455677899999999998 6666777778877776666656665443
No 350
>PRK11054 helD DNA helicase IV; Provisional
Probab=93.82 E-value=0.14 Score=52.72 Aligned_cols=57 Identities=16% Similarity=0.113 Sum_probs=41.1
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhc
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERD 127 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~ 127 (319)
.+++|.|..|||||.+..--+...+.. .......|+++..++.+|..+.+++...++
T Consensus 210 ~~~lV~agaGSGKT~vl~~r~ayLl~~-~~~~~~~IL~ltft~~AA~em~eRL~~~lg 266 (684)
T PRK11054 210 DSLLVLAGAGSGKTSVLVARAGWLLAR-GQAQPEQILLLAFGRQAAEEMDERIRERLG 266 (684)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHHHh-CCCCHHHeEEEeccHHHHHHHHHHHHHhcC
Confidence 568999999999998875544333322 222334788888999999999988876554
No 351
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.82 E-value=0.033 Score=38.73 Aligned_cols=19 Identities=26% Similarity=0.331 Sum_probs=15.9
Q ss_pred CCCcEEEecCCCCCccchh
Q psy496 68 ILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~ 86 (319)
.+...+|.|++|||||+.+
T Consensus 22 ~g~~tli~G~nGsGKSTll 40 (62)
T PF13555_consen 22 RGDVTLITGPNGSGKSTLL 40 (62)
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3457999999999999765
No 352
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.71 E-value=0.21 Score=48.91 Aligned_cols=41 Identities=22% Similarity=0.415 Sum_probs=26.0
Q ss_pred CCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEe
Q psy496 170 PILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILM 212 (319)
Q Consensus 170 ~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~l 212 (319)
+...+.+++||||+|. +..+..-.+++.+...++...+|+.
T Consensus 117 ~~~~~~kvvIIdead~--lt~~~~n~LLk~lEep~~~~~~Il~ 157 (451)
T PRK06305 117 PSKSRYKIYIIDEVHM--LTKEAFNSLLKTLEEPPQHVKFFLA 157 (451)
T ss_pred hhcCCCEEEEEecHHh--hCHHHHHHHHHHhhcCCCCceEEEE
Confidence 3456789999999997 4444444555555554445455543
No 353
>PRK10865 protein disaggregation chaperone; Provisional
Probab=93.70 E-value=0.76 Score=48.65 Aligned_cols=47 Identities=19% Similarity=0.160 Sum_probs=26.8
Q ss_pred cccccchhhHHHHHHhhh--cCCCC---CcEEEecCCCCCccchhhHHHHHHH
Q psy496 47 VTQPRRISAIALINKCLT--LSPIL---SPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 47 ~~Q~~~ip~~~~~~~~l~--~~~~~---~~vli~apTGSGKT~~~~l~il~~l 94 (319)
.-|..++..+...-.... ....+ ..++++||||+|||+.+-. +.+.+
T Consensus 571 iGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~a-La~~l 622 (857)
T PRK10865 571 IGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKA-LANFM 622 (857)
T ss_pred eCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHH-HHHHh
Confidence 456666666544322211 11112 4689999999999987633 33433
No 354
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.66 E-value=0.36 Score=40.68 Aligned_cols=23 Identities=17% Similarity=0.112 Sum_probs=19.1
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
...+.++.+.|.||+|||||+.+
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl 45 (178)
T cd03247 23 LELKQGEKIALLGRSGSGKSTLL 45 (178)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34567889999999999999754
No 355
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.59 E-value=0.071 Score=50.19 Aligned_cols=42 Identities=17% Similarity=0.140 Sum_probs=27.1
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRI 113 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~ 113 (319)
.+..++|+||||||||+..- .++..+... ...+|+.+.-..|
T Consensus 121 ~~g~ili~G~tGSGKTT~l~-al~~~i~~~---~~~~i~tiEdp~E 162 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLA-SMIDYINKN---AAGHIITIEDPIE 162 (343)
T ss_pred cCcEEEEECCCCCCHHHHHH-HHHHhhCcC---CCCEEEEEcCChh
Confidence 45789999999999998763 344444322 1246777554444
No 356
>COG1074 RecB ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]
Probab=93.59 E-value=0.15 Score=55.45 Aligned_cols=63 Identities=22% Similarity=0.216 Sum_probs=49.8
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhcc
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDE 128 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~ 128 (319)
.+.+++++|.|..|||||.+...-+++.+...+.-.--.|+|+.-|++.|..+..|+.+.+..
T Consensus 13 ~~~~~~~lveASAGSGKT~vL~~r~lrlLl~~~~~~v~~ILvvTFT~aAa~Emk~RI~~~L~~ 75 (1139)
T COG1074 13 SPPGQSVLVEASAGTGKTFVLAERVLRLLLEGGPLDVDEILVVTFTKAAAAEMKERIRDRLKE 75 (1139)
T ss_pred cCCCCcEEEEEcCCCCchhHHHHHHHHHHhhcCCCChhHeeeeeccHHHHHHHHHHHHHHHHH
Confidence 456789999999999999988888888777643122347888889999999998888776544
No 357
>PRK05973 replicative DNA helicase; Provisional
Probab=93.50 E-value=0.094 Score=46.71 Aligned_cols=59 Identities=8% Similarity=0.041 Sum_probs=38.5
Q ss_pred HHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 60 NKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 60 ~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
+++.+-.+.+..++|.|++|+|||+.....+.+....+. .++++ ..-+-..++.+++..
T Consensus 55 ~~l~GGl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge-----~vlyf-SlEes~~~i~~R~~s 113 (237)
T PRK05973 55 EELFSQLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGR-----TGVFF-TLEYTEQDVRDRLRA 113 (237)
T ss_pred HHhcCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCC-----eEEEE-EEeCCHHHHHHHHHH
Confidence 456667788899999999999999888777766543322 34443 222233555555543
No 358
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=93.39 E-value=0.44 Score=49.53 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=14.3
Q ss_pred CcEEEecCCCCCccchh
Q psy496 70 SPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~ 86 (319)
.++++.||||+|||..+
T Consensus 485 ~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELA 501 (731)
T ss_pred eeEEEECCCCccHHHHH
Confidence 35899999999999655
No 359
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.36 E-value=0.087 Score=46.18 Aligned_cols=17 Identities=24% Similarity=0.454 Sum_probs=13.7
Q ss_pred EEEecCCCCCccchhhH
Q psy496 72 SIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 72 vli~apTGSGKT~~~~l 88 (319)
++|.|+.|||||+.+.-
T Consensus 1 ~vv~G~pGsGKSt~i~~ 17 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKK 17 (234)
T ss_pred CEEEcCCCCCHHHHHHH
Confidence 47899999999986533
No 360
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=93.20 E-value=0.49 Score=44.40 Aligned_cols=53 Identities=13% Similarity=0.162 Sum_probs=37.6
Q ss_pred hHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecc
Q psy496 160 GILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSA 214 (319)
Q Consensus 160 g~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSA 214 (319)
-.+.+.+...+.....+++|||++|. +.....-+++|.+..-+++.-++++|.
T Consensus 94 R~l~~~~~~~~~~g~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~ 146 (334)
T PRK07993 94 REVTEKLYEHARLGGAKVVWLPDAAL--LTDAAANALLKTLEEPPENTWFFLACR 146 (334)
T ss_pred HHHHHHHhhccccCCceEEEEcchHh--hCHHHHHHHHHHhcCCCCCeEEEEEEC
Confidence 33445555566678899999999998 677777778887777655655555554
No 361
>PRK11823 DNA repair protein RadA; Provisional
Probab=92.90 E-value=0.17 Score=49.44 Aligned_cols=57 Identities=23% Similarity=0.079 Sum_probs=34.8
Q ss_pred HHhhh-cCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHH
Q psy496 60 NKCLT-LSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 60 ~~~l~-~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
++++. =...+..++|.|++|+|||+.....+.+.... ..+++|+.- .+-..|+..+.
T Consensus 70 D~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~-----g~~vlYvs~-Ees~~qi~~ra 127 (446)
T PRK11823 70 DRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAA-----GGKVLYVSG-EESASQIKLRA 127 (446)
T ss_pred HHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhc-----CCeEEEEEc-cccHHHHHHHH
Confidence 34443 34567789999999999998776655543311 126666543 34445655543
No 362
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=92.85 E-value=0.47 Score=44.63 Aligned_cols=54 Identities=17% Similarity=0.156 Sum_probs=37.1
Q ss_pred hHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEeccc
Q psy496 160 GILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSAT 215 (319)
Q Consensus 160 g~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT 215 (319)
..+.+.+...+.-...+++|||++|. +.....-++++.+...+++..+|++|.-
T Consensus 118 R~l~~~~~~~~~~~~~kV~iI~~ae~--m~~~AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 118 RALLDFCGVGTHRGGARVVVLYPAEA--LNVAAANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred HHHHHHhccCCccCCceEEEEechhh--cCHHHHHHHHHHhcCCCcCcEEEEEECC
Confidence 33444444455567899999999998 6777777777777765566555555543
No 363
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=92.83 E-value=0.051 Score=50.02 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=14.8
Q ss_pred CcEEEecCCCCCccchh
Q psy496 70 SPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~ 86 (319)
.|+++.||||||||+.+
T Consensus 98 SNILLiGPTGsGKTlLA 114 (408)
T COG1219 98 SNILLIGPTGSGKTLLA 114 (408)
T ss_pred ccEEEECCCCCcHHHHH
Confidence 58999999999999554
No 364
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=92.79 E-value=0.61 Score=49.40 Aligned_cols=41 Identities=22% Similarity=0.208 Sum_probs=25.4
Q ss_pred cccccchhhHHHHHHhhhc--CC---CCCcEEEecCCCCCccchhh
Q psy496 47 VTQPRRISAIALINKCLTL--SP---ILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 47 ~~Q~~~ip~~~~~~~~l~~--~~---~~~~vli~apTGSGKT~~~~ 87 (319)
.-|..++..+...-..... .. ....+++.||||+|||+.+-
T Consensus 568 ~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~ 613 (852)
T TIGR03346 568 VGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAK 613 (852)
T ss_pred CCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHH
Confidence 5577777776543222111 11 23468899999999997653
No 365
>PRK10436 hypothetical protein; Provisional
Probab=92.74 E-value=0.1 Score=51.09 Aligned_cols=37 Identities=19% Similarity=0.140 Sum_probs=24.6
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEec
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQ 109 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~ 109 (319)
.+..++++||||||||+.. ..+++.+... ..+|+.+.
T Consensus 217 ~~GliLvtGpTGSGKTTtL-~a~l~~~~~~----~~~i~TiE 253 (462)
T PRK10436 217 PQGLILVTGPTGSGKTVTL-YSALQTLNTA----QINICSVE 253 (462)
T ss_pred cCCeEEEECCCCCChHHHH-HHHHHhhCCC----CCEEEEec
Confidence 4578999999999999875 3455554322 23566543
No 366
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.72 E-value=0.19 Score=41.32 Aligned_cols=21 Identities=19% Similarity=0.162 Sum_probs=17.6
Q ss_pred CCCCCcEEEecCCCCCccchh
Q psy496 66 SPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~ 86 (319)
..+++.+.|.|++|||||+.+
T Consensus 22 i~~g~~~~i~G~nGsGKStll 42 (157)
T cd00267 22 LKAGEIVALVGPNGSGKSTLL 42 (157)
T ss_pred EcCCCEEEEECCCCCCHHHHH
Confidence 456788999999999999654
No 367
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=92.72 E-value=0.069 Score=49.70 Aligned_cols=39 Identities=21% Similarity=0.154 Sum_probs=26.1
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHH
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRIS 114 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~l 114 (319)
.|++|+|.||||||+.. +.+...- ...-+|+++.-|.||
T Consensus 174 ~NILisGGTGSGKTTlL-----Nal~~~i-~~~eRvItiEDtaEL 212 (355)
T COG4962 174 CNILISGGTGSGKTTLL-----NALSGFI-DSDERVITIEDTAEL 212 (355)
T ss_pred eeEEEeCCCCCCHHHHH-----HHHHhcC-CCcccEEEEeehhhh
Confidence 58999999999999653 2222211 112289998888776
No 368
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=92.66 E-value=0.49 Score=49.27 Aligned_cols=41 Identities=22% Similarity=0.176 Sum_probs=25.4
Q ss_pred cccccchhhHHHHHHhhhc--C---CCCCcEEEecCCCCCccchhh
Q psy496 47 VTQPRRISAIALINKCLTL--S---PILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 47 ~~Q~~~ip~~~~~~~~l~~--~---~~~~~vli~apTGSGKT~~~~ 87 (319)
.=|..++..+...-..... . ....+++++||||+|||..+-
T Consensus 461 iGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk 506 (758)
T PRK11034 461 FGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTV 506 (758)
T ss_pred eCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHH
Confidence 4577777666543222111 1 122468999999999997763
No 369
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=92.64 E-value=0.055 Score=46.16 Aligned_cols=21 Identities=33% Similarity=0.340 Sum_probs=18.0
Q ss_pred CCCCCcEEEecCCCCCccchh
Q psy496 66 SPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~ 86 (319)
...+.+++|+||||||||+.+
T Consensus 22 v~~g~~i~I~G~tGSGKTTll 42 (186)
T cd01130 22 VEARKNILISGGTGSGKTTLL 42 (186)
T ss_pred HhCCCEEEEECCCCCCHHHHH
Confidence 445789999999999999875
No 370
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=92.63 E-value=0.13 Score=48.92 Aligned_cols=43 Identities=19% Similarity=0.106 Sum_probs=27.6
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRI 113 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~ 113 (319)
.+..++|+||||||||+.. ..+++.+.... +..+++.+.-..|
T Consensus 148 ~~GlilI~G~TGSGKTT~l-~al~~~i~~~~--~~~~IvtiEdp~E 190 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA-ASIYQHCGETY--PDRKIVTYEDPIE 190 (372)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHHhcC--CCceEEEEecCch
Confidence 4568999999999999876 44555554321 1236777544434
No 371
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=92.63 E-value=0.19 Score=52.23 Aligned_cols=58 Identities=22% Similarity=0.216 Sum_probs=43.0
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhc
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERD 127 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~ 127 (319)
.+.++|.|..|||||.+...=+...+...+ -..-+|+++.-|+.+|..+.+++.+..+
T Consensus 17 ~g~~lV~AgaGSGKT~~l~~ria~Li~~~~-i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 17 EGPLLIMAGAGSGKTRVLTHRIAHLIAEKN-VAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHHHcCC-CCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 467999999999999887665554443222 2234788888999999999988887654
No 372
>KOG0391|consensus
Probab=92.63 E-value=0.16 Score=53.89 Aligned_cols=136 Identities=16% Similarity=0.158 Sum_probs=72.5
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEE--EEEe--
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVG--YQIR-- 142 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg--~~~~-- 142 (319)
.+|=|-|+.-+-|=|||..-.- ++.++.. +++.++--|++.||-.+-+ |.-+++..+ .|..+- |...
T Consensus 632 eknlNGILADEmGLGKTIQtIS-llAhLAC-eegnWGPHLIVVpTsviLn-----WEMElKRwc--PglKILTYyGs~kE 702 (1958)
T KOG0391|consen 632 EKNLNGILADEMGLGKTIQTIS-LLAHLAC-EEGNWGPHLIVVPTSVILN-----WEMELKRWC--PGLKILTYYGSHKE 702 (1958)
T ss_pred HhcccceehhhhcccchhHHHH-HHHHHHh-cccCCCCceEEeechhhhh-----hhHHHhhhC--CcceEeeecCCHHH
Confidence 3566789999999999977543 3334333 3344444444448855422 222222111 022221 1111
Q ss_pred -cccccCC---CCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 143 -LEKELPR---KRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 143 -~~~~~~~---~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
-+....+ +..|++|+++..+++-+..-. -.++.++|+||+|.. ..+-..++..+...+.. |.+++..|.
T Consensus 703 rkeKRqgW~kPnaFHVCItSYklv~qd~~AFk-rkrWqyLvLDEaqnI---KnfksqrWQAllnfnsq-rRLLLtgTP 775 (1958)
T KOG0391|consen 703 RKEKRQGWAKPNAFHVCITSYKLVFQDLTAFK-RKRWQYLVLDEAQNI---KNFKSQRWQALLNFNSQ-RRLLLTGTP 775 (1958)
T ss_pred HHHHhhcccCCCeeEEeehhhHHHHhHHHHHH-hhccceeehhhhhhh---cchhHHHHHHHhccchh-heeeecCCc
Confidence 1111111 234899999988876662211 146889999999972 22333444445444433 567777776
No 373
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=92.57 E-value=1 Score=41.74 Aligned_cols=44 Identities=20% Similarity=0.284 Sum_probs=30.1
Q ss_pred cCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEec
Q psy496 168 SDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMS 213 (319)
Q Consensus 168 ~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lS 213 (319)
..|...+.+++||||+|. +..+..-.+++.+...+++..+|+.+
T Consensus 87 ~~p~~~~~kv~iI~~ad~--m~~~a~naLLK~LEepp~~t~~il~~ 130 (313)
T PRK05564 87 KKPYEGDKKVIIIYNSEK--MTEQAQNAFLKTIEEPPKGVFIILLC 130 (313)
T ss_pred cCcccCCceEEEEechhh--cCHHHHHHHHHHhcCCCCCeEEEEEe
Confidence 456678899999999998 55555666677666655555455443
No 374
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=92.53 E-value=0.17 Score=45.56 Aligned_cols=54 Identities=20% Similarity=0.177 Sum_probs=36.1
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
-.+.+.+++|.|++|||||......+.+.+.... .++++ .+.+...++.+.+..
T Consensus 19 G~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge-----~vlyv-s~~e~~~~l~~~~~~ 72 (260)
T COG0467 19 GLPRGSVVLITGPPGTGKTIFALQFLYEGAREGE-----PVLYV-STEESPEELLENARS 72 (260)
T ss_pred CCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCC-----cEEEE-EecCCHHHHHHHHHH
Confidence 3578899999999999999888887776654422 23332 445555555554443
No 375
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=92.53 E-value=0.069 Score=49.51 Aligned_cols=21 Identities=38% Similarity=0.327 Sum_probs=18.2
Q ss_pred CCCCCcEEEecCCCCCccchh
Q psy496 66 SPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~ 86 (319)
...+.+++|+||||||||+..
T Consensus 141 v~~~~~ili~G~tGsGKTTll 161 (308)
T TIGR02788 141 IASRKNIIISGGTGSGKTTFL 161 (308)
T ss_pred hhCCCEEEEECCCCCCHHHHH
Confidence 446789999999999999865
No 376
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.51 E-value=0.094 Score=54.02 Aligned_cols=30 Identities=27% Similarity=0.263 Sum_probs=24.4
Q ss_pred HhhhcCCCCCcEEEecCCCCCccchhhHHH
Q psy496 61 KCLTLSPILSPSIIYTSTGCGKTTQVPQFI 90 (319)
Q Consensus 61 ~~l~~~~~~~~vli~apTGSGKT~~~~l~i 90 (319)
+.+..+.+.+-++|+||.|+|||+....+.
T Consensus 29 ~~L~~~~~~RL~li~APAGfGKttl~aq~~ 58 (894)
T COG2909 29 DRLRRANDYRLILISAPAGFGKTTLLAQWR 58 (894)
T ss_pred HHHhcCCCceEEEEeCCCCCcHHHHHHHHH
Confidence 456667777889999999999998876654
No 377
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=92.51 E-value=0.18 Score=50.98 Aligned_cols=51 Identities=12% Similarity=0.004 Sum_probs=39.4
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
...+++++.||||||||..+.+|-+-.. . ..++++-|.-|+....+...++
T Consensus 156 ~g~~hvLviapTgSGKg~g~VIPnLL~~--~-----~S~VV~DpKGEl~~~Ta~~R~~ 206 (606)
T PRK13897 156 DGFQHALLFAPTGSGKGVGFVIPNLLFW--E-----DSVVVHDIKLENYELTSGWREK 206 (606)
T ss_pred cCCceEEEEcCCCCCcceEEehhhHHhC--C-----CCEEEEeCcHHHHHHHHHHHHH
Confidence 3457899999999999999999976531 1 2688888999998777764443
No 378
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=92.45 E-value=0.15 Score=48.27 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=21.3
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEI 95 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~ 95 (319)
..+..++|+||||||||+.. ..++..+.
T Consensus 132 ~~~glilI~GpTGSGKTTtL-~aLl~~i~ 159 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLL-AAIIRELA 159 (358)
T ss_pred ccCCEEEEECCCCCCHHHHH-HHHHHHHh
Confidence 35789999999999999876 44555443
No 379
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=92.42 E-value=0.087 Score=50.29 Aligned_cols=46 Identities=15% Similarity=0.104 Sum_probs=34.6
Q ss_pred cEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 71 PSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
++++.||||||||..+.+|-+-. . ...++++-|.-++....+....
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~--~-----~~s~vv~D~Kge~~~~t~~~r~ 46 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLT--W-----PGSVVVLDPKGENFELTSEHRR 46 (384)
T ss_pred CeeEecCCCCCCccEEEccchhc--C-----CCCEEEEccchhHHHHHHHHHH
Confidence 47899999999999998876532 1 1378888899998876665443
No 380
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=92.41 E-value=0.056 Score=42.25 Aligned_cols=17 Identities=35% Similarity=0.468 Sum_probs=14.3
Q ss_pred EEEecCCCCCccchhhH
Q psy496 72 SIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 72 vli~apTGSGKT~~~~l 88 (319)
++|+|++|||||+..-.
T Consensus 2 I~I~G~~gsGKST~a~~ 18 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKE 18 (121)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 78999999999977633
No 381
>KOG0920|consensus
Probab=92.40 E-value=0.026 Score=58.91 Aligned_cols=54 Identities=57% Similarity=1.010 Sum_probs=49.1
Q ss_pred hhhhHHHHHHHHhhhhhhhccccCCCcEEEeCCccccccccchHhHHHHhHhhc
Q psy496 252 TRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMTRTLK 305 (319)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~v~~~~~~~~~~~~~~~~ 305 (319)
.+++++.++|+.+++++.+...++|...+-+|||.|||.++|+||++.+++-..
T Consensus 316 ~~p~LkvILMSAT~dae~fs~YF~~~pvi~i~grtfpV~~~fLEDil~~~~~~~ 369 (924)
T KOG0920|consen 316 RNPDLKVILMSATLDAELFSDYFGGCPVITIPGRTFPVKEYFLEDILSKTGYVS 369 (924)
T ss_pred hCCCceEEEeeeecchHHHHHHhCCCceEeecCCCcchHHHHHHHHHHHhcccc
Confidence 368899999999999999999899999999999999999999999999995433
No 382
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=92.33 E-value=0.51 Score=48.83 Aligned_cols=117 Identities=21% Similarity=0.281 Sum_probs=59.1
Q ss_pred cccccchhhHHHHHHhh--hcCC---CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHH
Q psy496 47 VTQPRRISAIALINKCL--TLSP---ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAER 121 (319)
Q Consensus 47 ~~Q~~~ip~~~~~~~~l--~~~~---~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~ 121 (319)
.=|..|+.++...-..- +... .-.+.+..||||.|||...- .+.+.+.... ...|=+ -+-|--. ...
T Consensus 494 iGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAk-aLA~~Lfg~e---~aliR~--DMSEy~E--kHs 565 (786)
T COG0542 494 IGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAK-ALAEALFGDE---QALIRI--DMSEYME--KHS 565 (786)
T ss_pred eChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHH-HHHHHhcCCC---ccceee--chHHHHH--HHH
Confidence 44777777765422211 1111 22468889999999997652 2333333322 122222 3333211 122
Q ss_pred HHHHhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHH
Q psy496 122 VAQERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILK 198 (319)
Q Consensus 122 ~~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~ 198 (319)
++++.|....| |||.. -|.|.+..+.+| +++|.+||+.. .+.+++--.+.
T Consensus 566 VSrLIGaPPGY----VGyee-----------------GG~LTEaVRr~P----ySViLlDEIEK--AHpdV~nilLQ 615 (786)
T COG0542 566 VSRLIGAPPGY----VGYEE-----------------GGQLTEAVRRKP----YSVILLDEIEK--AHPDVFNLLLQ 615 (786)
T ss_pred HHHHhCCCCCC----ceecc-----------------ccchhHhhhcCC----CeEEEechhhh--cCHHHHHHHHH
Confidence 45555544432 22111 123455555544 78999999998 55554443333
No 383
>PRK13764 ATPase; Provisional
Probab=92.29 E-value=0.14 Score=51.58 Aligned_cols=42 Identities=17% Similarity=0.071 Sum_probs=27.0
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRIS 114 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~l 114 (319)
...+++|+||||||||+.. ..+++.+...+ ..|+.+.-.+|+
T Consensus 256 ~~~~ILIsG~TGSGKTTll-~AL~~~i~~~~----riV~TiEDp~El 297 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFA-QALAEFYADMG----KIVKTMESPRDL 297 (602)
T ss_pred cCCEEEEECCCCCCHHHHH-HHHHHHHhhCC----CEEEEECCCccc
Confidence 4578999999999999865 44555554322 234455444454
No 384
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.23 E-value=0.45 Score=45.35 Aligned_cols=50 Identities=22% Similarity=0.068 Sum_probs=30.9
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAER 121 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~ 121 (319)
...+..++|.|++|+|||+.....+.+.. ..+ .+++|+.-. +-..|+..+
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~a~~~a-~~g----~~VlYvs~E-Es~~qi~~R 128 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQVAARLA-KRG----GKVLYVSGE-ESPEQIKLR 128 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHHHHH-hcC----CeEEEEECC-cCHHHHHHH
Confidence 45578899999999999987766544332 221 267776432 333455443
No 385
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.22 E-value=0.067 Score=52.18 Aligned_cols=29 Identities=24% Similarity=0.205 Sum_probs=20.5
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHHH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEIA 96 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~~ 96 (319)
..+.-++++||||||||+.. ..+++.+..
T Consensus 256 ~p~GliLvTGPTGSGKTTTL-Y~~L~~ln~ 284 (500)
T COG2804 256 RPQGLILVTGPTGSGKTTTL-YAALSELNT 284 (500)
T ss_pred CCCeEEEEeCCCCCCHHHHH-HHHHHHhcC
Confidence 34577999999999999774 344444443
No 386
>PTZ00293 thymidine kinase; Provisional
Probab=92.21 E-value=0.28 Score=42.86 Aligned_cols=38 Identities=18% Similarity=0.112 Sum_probs=24.6
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEeccc
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPR 111 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Pt 111 (319)
+.-.+++||-+||||+-.+..+.+....+. +++++.|.
T Consensus 4 G~i~vi~GpMfSGKTteLLr~i~~y~~ag~-----kv~~~kp~ 41 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTELMRLVKRFTYSEK-----KCVVIKYS 41 (211)
T ss_pred eEEEEEECCCCChHHHHHHHHHHHHHHcCC-----ceEEEEec
Confidence 345788999999999877665544433322 45554464
No 387
>KOG0058|consensus
Probab=92.13 E-value=0.074 Score=53.82 Aligned_cols=36 Identities=14% Similarity=-0.041 Sum_probs=27.4
Q ss_pred HHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHh
Q psy496 60 NKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIAR 97 (319)
Q Consensus 60 ~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~ 97 (319)
+++-...+.++++-++||.|||||+++.+ +.+++..
T Consensus 485 k~lsfti~pGe~vALVGPSGsGKSTiasL--L~rfY~P 520 (716)
T KOG0058|consen 485 KNLSFTIRPGEVVALVGPSGSGKSTIASL--LLRFYDP 520 (716)
T ss_pred cCceeeeCCCCEEEEECCCCCCHHHHHHH--HHHhcCC
Confidence 35556677899999999999999988744 4555543
No 388
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.07 E-value=0.13 Score=46.36 Aligned_cols=30 Identities=27% Similarity=0.264 Sum_probs=23.8
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEI 95 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~ 95 (319)
.+.+..++|+|++|||||+.....+.+.+.
T Consensus 33 ip~gs~~lI~G~pGtGKT~l~~qf~~~~a~ 62 (259)
T TIGR03878 33 IPAYSVINITGVSDTGKSLMVEQFAVTQAS 62 (259)
T ss_pred eECCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 456788999999999999888776665543
No 389
>PRK04841 transcriptional regulator MalT; Provisional
Probab=92.00 E-value=1.1 Score=47.56 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=21.3
Q ss_pred hcCCCCCcEEEecCCCCCccchhhHHH
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQVPQFI 90 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~~l~i 90 (319)
........++|+||.|.|||+....++
T Consensus 27 ~~~~~~~~~~v~apaG~GKTtl~~~~~ 53 (903)
T PRK04841 27 SGANNYRLVLVTSPAGYGKTTLISQWA 53 (903)
T ss_pred hcccCCCeEEEECCCCCCHHHHHHHHH
Confidence 334456789999999999999886655
No 390
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=91.93 E-value=0.12 Score=51.93 Aligned_cols=26 Identities=23% Similarity=0.188 Sum_probs=20.1
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l 94 (319)
.+..++++||||||||+.. ..+++.+
T Consensus 315 ~~Glilv~G~tGSGKTTtl-~a~l~~~ 340 (564)
T TIGR02538 315 PQGMVLVTGPTGSGKTVSL-YTALNIL 340 (564)
T ss_pred cCCeEEEECCCCCCHHHHH-HHHHHhh
Confidence 4578999999999999885 4455554
No 391
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.91 E-value=0.21 Score=44.14 Aligned_cols=33 Identities=15% Similarity=-0.103 Sum_probs=24.7
Q ss_pred hcCCCCCcEEEecCCCCCccchhhHHHHHHHHH
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQVPQFILDDEIA 96 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~ 96 (319)
.-.+.++.++|+|++|+|||+.....+.+....
T Consensus 8 ~Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~ 40 (242)
T cd00984 8 GGLQPGDLIIIAARPSMGKTAFALNIAENIAKK 40 (242)
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 334567889999999999998776666655444
No 392
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.88 E-value=0.56 Score=39.25 Aligned_cols=23 Identities=22% Similarity=0.150 Sum_probs=19.0
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
...+.++.+.|.||.|||||+.+
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl 45 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLL 45 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34567889999999999999654
No 393
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=91.80 E-value=0.13 Score=49.62 Aligned_cols=44 Identities=27% Similarity=0.289 Sum_probs=29.0
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAI 116 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~ 116 (319)
.+++++|.|+||||||..+.. ++..+...+ .++++.-|..++..
T Consensus 41 ~~~h~~i~g~tGsGKt~~i~~-l~~~~~~~~----~~~vi~D~kg~~~~ 84 (410)
T cd01127 41 EEAHTMIIGTTGTGKTTQIRE-LLASIRARG----DRAIIYDPNGGFVS 84 (410)
T ss_pred hhccEEEEcCCCCCHHHHHHH-HHHHHHhcC----CCEEEEeCCcchhH
Confidence 457899999999999986433 344443322 25677677766543
No 394
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=91.77 E-value=0.2 Score=43.36 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=22.6
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l 94 (319)
.+.++.+.|+||+|||||......+.+..
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~ 37 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAA 37 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35678899999999999988766655443
No 395
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=91.69 E-value=0.19 Score=51.47 Aligned_cols=50 Identities=12% Similarity=-0.017 Sum_probs=37.7
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
..++++++.||||||||..+.+|-+-. .. ..++++-|.-|+....+...+
T Consensus 137 ~~~~hvlviApTgSGKgvg~VIPnLL~--~~-----gS~VV~DpKGE~~~~Ta~~R~ 186 (670)
T PRK13850 137 GEQPHSLVVAPTRAGKGVGVVIPTLLT--FK-----GSVIALDVKGELFELTSRARK 186 (670)
T ss_pred CCCceEEEEecCCCCceeeehHhHHhc--CC-----CCEEEEeCCchHHHHHHHHHH
Confidence 445789999999999999998886543 11 268888899998776665443
No 396
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=91.60 E-value=0.081 Score=41.45 Aligned_cols=17 Identities=35% Similarity=0.272 Sum_probs=14.2
Q ss_pred EEEecCCCCCccchhhH
Q psy496 72 SIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 72 vli~apTGSGKT~~~~l 88 (319)
++|+|++|||||+..-.
T Consensus 1 I~i~G~~GsGKtTia~~ 17 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKE 17 (129)
T ss_dssp EEEEESTTSSHHHHHHH
T ss_pred CEEECCCCCCHHHHHHH
Confidence 57999999999987633
No 397
>KOG1970|consensus
Probab=91.54 E-value=0.2 Score=49.29 Aligned_cols=59 Identities=15% Similarity=0.160 Sum_probs=34.2
Q ss_pred ccchHHHhccCCccccccccccchhhHHHHHHhhh---cCCCCCcEEEecCCCCCccchhhH
Q psy496 30 ILDDEIARNRGSECCIMVTQPRRISAIALINKCLT---LSPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~---~~~~~~~vli~apTGSGKT~~~~l 88 (319)
-.+.|++........-..+..+-|..+.+--+.++ ....++.++|+||+|||||++.-.
T Consensus 68 ~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkv 129 (634)
T KOG1970|consen 68 EFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKV 129 (634)
T ss_pred ccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHH
Confidence 35567676554433333445554444433222222 223566899999999999998744
No 398
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=91.36 E-value=0.088 Score=42.33 Aligned_cols=16 Identities=31% Similarity=0.466 Sum_probs=13.8
Q ss_pred EEEecCCCCCccchhh
Q psy496 72 SIIYTSTGCGKTTQVP 87 (319)
Q Consensus 72 vli~apTGSGKT~~~~ 87 (319)
++++|++|||||+.+-
T Consensus 2 ii~~G~pgsGKSt~a~ 17 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAK 17 (143)
T ss_dssp EEEEESTTSSHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 7899999999997753
No 399
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=91.31 E-value=0.26 Score=51.51 Aligned_cols=63 Identities=17% Similarity=0.126 Sum_probs=44.1
Q ss_pred CceEEEECchHHHHHH-hcCCCCCCccEEEEeccccc-ccchh-HHHHHHHhhhccccCceEEEecccc
Q psy496 151 RGSILYCTAGILPEVM-QSDPILSGVSHIVMDEIHER-SMISD-FLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 151 ~~~Iiv~Tpg~ll~~l-~~~~~l~~v~~vViDEah~~-~~~~~-~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
++.|+++||.+|..-+ .+...+..+..+|+||||+. +-..+ +...+. ...++..-+.+|||.+
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rly---r~~n~~gfIkafSdsP 72 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLY---RQKNKTGFIKAFSDNP 72 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHH---HHhCCCcceEEecCCC
Confidence 4569999999996555 66667999999999999972 12222 333222 2334456789999998
No 400
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=91.23 E-value=0.51 Score=42.98 Aligned_cols=39 Identities=26% Similarity=0.378 Sum_probs=23.3
Q ss_pred chHHHHHHhcCCCCCCccEEEEecccccccch-hHHHHHHHhh
Q psy496 159 AGILPEVMQSDPILSGVSHIVMDEIHERSMIS-DFLLAILKDV 200 (319)
Q Consensus 159 pg~ll~~l~~~~~l~~v~~vViDEah~~~~~~-~~~~~~l~~~ 200 (319)
||-|...+. .|+.-+++.|||+|+.+... +.+...++..
T Consensus 91 ~gDlaaiLt---~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf 130 (332)
T COG2255 91 PGDLAAILT---NLEEGDVLFIDEIHRLSPAVEEVLYPAMEDF 130 (332)
T ss_pred hhhHHHHHh---cCCcCCeEEEehhhhcChhHHHHhhhhhhhe
Confidence 444555553 25677899999999844333 3444554443
No 401
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=91.19 E-value=0.4 Score=40.19 Aligned_cols=22 Identities=23% Similarity=0.145 Sum_probs=18.5
Q ss_pred cCCCCCcEEEecCCCCCccchh
Q psy496 65 LSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~ 86 (319)
....++.+.|.||+|||||+.+
T Consensus 24 ~i~~Ge~~~i~G~nGsGKStLl 45 (173)
T cd03246 24 SIEPGESLAIIGPSGSGKSTLA 45 (173)
T ss_pred EECCCCEEEEECCCCCCHHHHH
Confidence 3567889999999999999754
No 402
>KOG2373|consensus
Probab=91.18 E-value=0.51 Score=44.09 Aligned_cols=113 Identities=15% Similarity=0.130 Sum_probs=56.5
Q ss_pred hhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHH-hccccCCCCceEEEE
Q psy496 62 CLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQE-RDEQCGRPGSSVGYQ 140 (319)
Q Consensus 62 ~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~-~~~~~~~~g~~vg~~ 140 (319)
++.-...++-.+++||||||||+...-+.++....+-....+..=+ |..-||.-...+++.. +.... -.|.
T Consensus 266 ~LkGhR~GElTvlTGpTGsGKTTFlsEYsLDL~~QGVnTLwgSFEi--~n~rla~~mL~Qyagyrl~drl------~~y~ 337 (514)
T KOG2373|consen 266 YLKGHRPGELTVLTGPTGSGKTTFLSEYSLDLFTQGVNTLWGSFEI--PNKRLAHWMLVQYAGYRLLDRL------NSYK 337 (514)
T ss_pred HhccCCCCceEEEecCCCCCceeEehHhhHHHHhhhhhheeeeeec--chHHHHHHHHHHHccCchHhhh------hhhh
Confidence 4444556778999999999999987777666443322211222222 4444444333323221 00000 0000
Q ss_pred EecccccCCCCceEEEECc------hHHHHHHhcCCCCCCccEEEEecccc
Q psy496 141 IRLEKELPRKRGSILYCTA------GILPEVMQSDPILSGVSHIVMDEIHE 185 (319)
Q Consensus 141 ~~~~~~~~~~~~~Iiv~Tp------g~ll~~l~~~~~l~~v~~vViDEah~ 185 (319)
-+.+. .++....++|- ...++.+.......++.+||||...-
T Consensus 338 HWadr---FErlplyfmtfhgqq~~~~vi~~i~ha~yV~di~HViIDNLQF 385 (514)
T KOG2373|consen 338 HWADR---FERLPLYFMTFHGQQFMEKVINEIAHAIYVEDIQHVIIDNLQF 385 (514)
T ss_pred HHHHH---HhccchHhhhhcccchHHHHHHHHHHHHHHHhhhhhhhhhHHH
Confidence 11000 02223444442 22344554445577899999999884
No 403
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=91.16 E-value=0.37 Score=50.46 Aligned_cols=19 Identities=21% Similarity=0.085 Sum_probs=15.7
Q ss_pred CCCcEEEecCCCCCccchh
Q psy496 68 ILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~ 86 (319)
.+..+++.||+|+|||+.+
T Consensus 346 ~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4457999999999999665
No 404
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=91.15 E-value=1 Score=43.28 Aligned_cols=37 Identities=24% Similarity=0.412 Sum_probs=23.5
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEe
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVT 108 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~ 108 (319)
...++|+||+|+|||-..-.+.- .... .++.++++++
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign-~~~~--~~~~a~v~y~ 149 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGN-EALA--NGPNARVVYL 149 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHH-HHHh--hCCCceEEec
Confidence 56799999999999965433322 2222 2345677773
No 405
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=91.14 E-value=1 Score=43.15 Aligned_cols=27 Identities=26% Similarity=0.307 Sum_probs=21.6
Q ss_pred HhhhcCCCCCcEEEecCCCCCccchhh
Q psy496 61 KCLTLSPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 61 ~~l~~~~~~~~vli~apTGSGKT~~~~ 87 (319)
.+-.-++.+..|+|.|+||+||+..+-
T Consensus 93 qik~~ap~~~~vLi~GetGtGKel~A~ 119 (403)
T COG1221 93 QIKAYAPSGLPVLIIGETGTGKELFAR 119 (403)
T ss_pred HHHhhCCCCCcEEEecCCCccHHHHHH
Confidence 333457788999999999999997663
No 406
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.13 E-value=0.097 Score=47.66 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=17.6
Q ss_pred CCCcEEEecCCCCCccchhhH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l 88 (319)
.++.++++||+|||||...--
T Consensus 32 ~~~pvLl~G~~GtGKT~li~~ 52 (272)
T PF12775_consen 32 NGRPVLLVGPSGTGKTSLIQN 52 (272)
T ss_dssp CTEEEEEESSTTSSHHHHHHH
T ss_pred cCCcEEEECCCCCchhHHHHh
Confidence 468899999999999976543
No 407
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=91.09 E-value=0.23 Score=50.73 Aligned_cols=46 Identities=15% Similarity=-0.020 Sum_probs=35.3
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAE 120 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~ 120 (319)
..+++++.||||||||..+.+|.+-. . ...++++-|..|+....+.
T Consensus 174 g~~HvlviapTgSGKgvg~ViPnLL~--~-----~~S~VV~D~KGE~~~~Tag 219 (636)
T PRK13880 174 GPEHVLTYAPTRSGKGVGLVVPTLLS--W-----GHSSVITDLKGELWALTAG 219 (636)
T ss_pred CCceEEEEecCCCCCceEEEccchhh--C-----CCCEEEEeCcHHHHHHHHH
Confidence 45789999999999999998887642 1 1268888899998655554
No 408
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.06 E-value=0.55 Score=39.58 Aligned_cols=22 Identities=18% Similarity=0.148 Sum_probs=18.5
Q ss_pred cCCCCCcEEEecCCCCCccchh
Q psy496 65 LSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~ 86 (319)
....++.+.|.||.|||||+.+
T Consensus 22 ~i~~G~~~~i~G~nGsGKSTLl 43 (178)
T cd03229 22 NIEAGEIVALLGPSGSGKSTLL 43 (178)
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 4567889999999999999754
No 409
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=91.06 E-value=1.5 Score=39.68 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=14.3
Q ss_pred CcEEEecCCCCCccch
Q psy496 70 SPSIIYTSTGCGKTTQ 85 (319)
Q Consensus 70 ~~vli~apTGSGKT~~ 85 (319)
+||+..||+|+|||..
T Consensus 152 knVLFyGppGTGKTm~ 167 (368)
T COG1223 152 KNVLFYGPPGTGKTMM 167 (368)
T ss_pred ceeEEECCCCccHHHH
Confidence 7899999999999943
No 410
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=91.04 E-value=0.11 Score=46.89 Aligned_cols=29 Identities=24% Similarity=0.238 Sum_probs=22.2
Q ss_pred HHhhhcCCCCCcEEEecCCCCCccchhhH
Q psy496 60 NKCLTLSPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 60 ~~~l~~~~~~~~vli~apTGSGKT~~~~l 88 (319)
+.++.....+.++++.||+|+|||..+..
T Consensus 12 ~~~l~~l~~g~~vLL~G~~GtGKT~lA~~ 40 (262)
T TIGR02640 12 SRALRYLKSGYPVHLRGPAGTGKTTLAMH 40 (262)
T ss_pred HHHHHHHhcCCeEEEEcCCCCCHHHHHHH
Confidence 34455556678999999999999977643
No 411
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=91.04 E-value=0.093 Score=42.18 Aligned_cols=18 Identities=33% Similarity=0.569 Sum_probs=15.0
Q ss_pred cEEEecCCCCCccchhhH
Q psy496 71 PSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l 88 (319)
+|+|.||+|+|||..+-.
T Consensus 1 ~vlL~G~~G~GKt~l~~~ 18 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARE 18 (139)
T ss_dssp EEEEEESSSSSHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHH
Confidence 489999999999976643
No 412
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=90.95 E-value=0.26 Score=43.23 Aligned_cols=30 Identities=20% Similarity=0.055 Sum_probs=23.5
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l 94 (319)
-.+.+..++|.|++|||||+.....+.+.+
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~ 45 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGL 45 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHH
Confidence 356788999999999999987766555544
No 413
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=90.93 E-value=0.11 Score=40.88 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=13.6
Q ss_pred EEEecCCCCCccchhh
Q psy496 72 SIIYTSTGCGKTTQVP 87 (319)
Q Consensus 72 vli~apTGSGKT~~~~ 87 (319)
+++.||+|+|||+.+-
T Consensus 1 ill~G~~G~GKT~l~~ 16 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLAR 16 (132)
T ss_dssp EEEESSTTSSHHHHHH
T ss_pred CEEECcCCCCeeHHHH
Confidence 6899999999997653
No 414
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=90.90 E-value=0.45 Score=48.78 Aligned_cols=71 Identities=17% Similarity=0.115 Sum_probs=46.3
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
++-.|..+|..+.++-. ...+..++.|-||||||..... +++.. + ..+|+++|.+.+|.|+++.+..
T Consensus 10 ~~~~Q~~ai~~l~~~~~-----~~~~~~~l~Gvtgs~kt~~~a~-~~~~~---~----~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 10 PAGDQPKAIAKLVEGLT-----DGEKHQTLLGVTGSGKTFTMAN-VIAQV---N----RPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred CChHHHHHHHHHHHhhh-----cCCCcEEEECCCCcHHHHHHHH-HHHHh---C----CCEEEEECCHHHHHHHHHHHHH
Confidence 44457777766654331 1122446899999999976543 22221 1 1456666999999999999988
Q ss_pred Hhcc
Q psy496 125 ERDE 128 (319)
Q Consensus 125 ~~~~ 128 (319)
++..
T Consensus 77 f~p~ 80 (655)
T TIGR00631 77 FFPE 80 (655)
T ss_pred hCCC
Confidence 8754
No 415
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=90.85 E-value=0.3 Score=46.79 Aligned_cols=45 Identities=24% Similarity=0.237 Sum_probs=29.7
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIA 117 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q 117 (319)
..+++++.|.||||||.+ +..++..+...+ -++++.-|.-+....
T Consensus 14 e~~~~li~G~~GsGKT~~-i~~ll~~~~~~g----~~~iI~D~kg~~~~~ 58 (386)
T PF10412_consen 14 ENRHILIIGATGSGKTQA-IRHLLDQIRARG----DRAIIYDPKGEFTER 58 (386)
T ss_dssp GGG-EEEEE-TTSSHHHH-HHHHHHHHHHTT-----EEEEEEETTHHHHH
T ss_pred hhCcEEEECCCCCCHHHH-HHHHHHHHHHcC----CEEEEEECCchHHHH
Confidence 357799999999999974 456676665544 266666787665443
No 416
>TIGR03743 SXT_TraD conjugative coupling factor TraD, SXT/TOL subfamily. Members of this protein family are the putative conjugative coupling factor, TraD (or TraG), rather distantly related to the well-characterized TraD of the F plasmid. Members are associated with conjugative-transposon-like mobile genetic elements of the class that includes SXT, an antibiotic resistance transfer element in some Vibrio cholerae strains.
Probab=90.80 E-value=0.41 Score=48.85 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=32.8
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHH--HHHHHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRI--SAIAIAE 120 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~--la~q~~~ 120 (319)
...+++|.|+||||||..+...+.+.+.. + ..++++-|-.. +...+..
T Consensus 175 ~~~H~lv~G~TGsGKT~l~~~l~~q~i~~-g----~~viv~DpKgD~~l~~~~~~ 224 (634)
T TIGR03743 175 RVGHTLVLGTTGVGKTRLAELLITQDIRR-G----DVVIVIDPKGDADLKRRMRA 224 (634)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHHHc-C----CeEEEEeCCCchHHHHHHHH
Confidence 45789999999999998875555444433 2 26788778754 4444443
No 417
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=90.78 E-value=0.9 Score=38.48 Aligned_cols=16 Identities=31% Similarity=0.397 Sum_probs=13.9
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
..+|.||+|||||..+
T Consensus 24 ~~~i~G~NGsGKSnil 39 (178)
T cd03239 24 FNAIVGPNGSGKSNIV 39 (178)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6789999999999764
No 418
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=90.70 E-value=0.33 Score=42.48 Aligned_cols=53 Identities=19% Similarity=0.072 Sum_probs=33.0
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
.+.+..++|.|++|+|||......+.+.+.... .++++. +.+-..++.+++..
T Consensus 13 i~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~-----~~~y~s-~e~~~~~l~~~~~~ 65 (224)
T TIGR03880 13 FPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGE-----KAMYIS-LEEREERILGYAKS 65 (224)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCC-----eEEEEE-CCCCHHHHHHHHHH
Confidence 456788999999999999877666655543322 444442 23334555554433
No 419
>PHA02533 17 large terminase protein; Provisional
Probab=90.65 E-value=1.9 Score=43.21 Aligned_cols=136 Identities=18% Similarity=0.098 Sum_probs=70.4
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecc-ccc
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLE-KEL 147 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~-~~~ 147 (319)
++-.++..+=..|||+......+....... ...+++++|++.-|..+.+++.......... ...+...... .-.
T Consensus 74 ~R~~ii~~aRq~GKStl~a~~al~~a~~~~---~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l--~~~~i~~~~~~~I~ 148 (534)
T PHA02533 74 NRFNACNLSRQLGKTTVVAIFLLHYVCFNK---DKNVGILAHKASMAAEVLDRTKQAIELLPDF--LQPGIVEWNKGSIE 148 (534)
T ss_pred CeEEEEEEcCcCChHHHHHHHHHHHHHhCC---CCEEEEEeCCHHHHHHHHHHHHHHHHhCHHH--hhcceeecCccEEE
Confidence 455678888899999888755544333322 3488888899999999888777554322100 0001000000 000
Q ss_pred CCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 148 PRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 148 ~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
...++.|.+.|.+. +-.++ .+..++|+||+|...-..++..++...+.. ....+++.+|.+-
T Consensus 149 l~NGS~I~~lss~~--~t~rG----~~~~~liiDE~a~~~~~~e~~~ai~p~las-g~~~r~iiiSTp~ 210 (534)
T PHA02533 149 LENGSKIGAYASSP--DAVRG----NSFAMIYIDECAFIPNFIDFWLAIQPVISS-GRSSKIIITSTPN 210 (534)
T ss_pred eCCCCEEEEEeCCC--CccCC----CCCceEEEeccccCCCHHHHHHHHHHHHHc-CCCceEEEEECCC
Confidence 01233454444321 11111 256789999999732222344333333332 2234666666665
No 420
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=90.62 E-value=0.17 Score=45.80 Aligned_cols=41 Identities=22% Similarity=0.155 Sum_probs=25.7
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRI 113 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~ 113 (319)
....++|+|+||||||+.. ..+++.+.. ...+++.+.-..|
T Consensus 79 ~~GlilisG~tGSGKTT~l-~all~~i~~----~~~~iitiEdp~E 119 (264)
T cd01129 79 PHGIILVTGPTGSGKTTTL-YSALSELNT----PEKNIITVEDPVE 119 (264)
T ss_pred CCCEEEEECCCCCcHHHHH-HHHHhhhCC----CCCeEEEECCCce
Confidence 3467999999999999876 334444422 1236666544433
No 421
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=90.56 E-value=0.75 Score=41.19 Aligned_cols=28 Identities=18% Similarity=0.023 Sum_probs=20.3
Q ss_pred CCCCC-cEEEecCCCCCccchhhHHHHHHH
Q psy496 66 SPILS-PSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 66 ~~~~~-~vli~apTGSGKT~~~~l~il~~l 94 (319)
..+++ .+.++|+-|||||...- +++..+
T Consensus 47 i~d~qg~~~vtGevGsGKTv~~R-al~~s~ 75 (269)
T COG3267 47 IADGQGILAVTGEVGSGKTVLRR-ALLASL 75 (269)
T ss_pred HhcCCceEEEEecCCCchhHHHH-HHHHhc
Confidence 34455 89999999999998766 444433
No 422
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=90.53 E-value=2.1 Score=39.25 Aligned_cols=53 Identities=25% Similarity=0.231 Sum_probs=39.4
Q ss_pred HHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 162 LPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 162 ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
+.+.+...+.-...+++|||++|. +..+..-++++.+...+++..++++|...
T Consensus 83 l~~~~~~~p~e~~~kv~ii~~ad~--mt~~AaNaLLK~LEEPp~~~~fiL~~~~~ 135 (290)
T PRK05917 83 IKKQIWIHPYESPYKIYIIHEADR--MTLDAISAFLKVLEDPPQHGVIILTSAKP 135 (290)
T ss_pred HHHHHhhCccCCCceEEEEechhh--cCHHHHHHHHHHhhcCCCCeEEEEEeCCh
Confidence 444444456667899999999998 67777778888887766677777776654
No 423
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=90.41 E-value=0.49 Score=52.13 Aligned_cols=124 Identities=14% Similarity=0.153 Sum_probs=69.6
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccccc
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKEL 147 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~ 147 (319)
.+.+++|.|..|||||.+..--++..+... ...-+++++.=|+.+|..+..++.+.+.... ..... ........
T Consensus 13 ~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~--~~~~~il~~tFt~~aa~e~~~ri~~~l~~~~---~~~p~-~~~L~~q~ 86 (1232)
T TIGR02785 13 RGQNILVSASAGSGKTAVLVERIIKKILRG--VDIDRLLVVTFTNAAAREMKERIEEALQKAL---QQEPN-SKHLRRQL 86 (1232)
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHHHhcC--CCHhhEEEEeccHHHHHHHHHHHHHHHHHHH---hcCch-hHHHHHHH
Confidence 467899999999999988766666655432 1123577877999999999888887765432 10000 00000000
Q ss_pred CCCCceEEEECchHHH-HHHhcCCCCCCc--cEEEEecccccccchhHHHHHHH
Q psy496 148 PRKRGSILYCTAGILP-EVMQSDPILSGV--SHIVMDEIHERSMISDFLLAILK 198 (319)
Q Consensus 148 ~~~~~~Iiv~Tpg~ll-~~l~~~~~l~~v--~~vViDEah~~~~~~~~~~~~l~ 198 (319)
..-...-|+|-..+. +.++.....-++ .+=|.||....-+..+.+..++.
T Consensus 87 -~~~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~~ll~~e~~~~~~e 139 (1232)
T TIGR02785 87 -ALLNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQLLLIKEVVDDVFE 139 (1232)
T ss_pred -hhccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHHHHHHHHHHHHHHH
Confidence 011225577865554 444443322222 44568888753333444444443
No 424
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=90.28 E-value=0.53 Score=39.92 Aligned_cols=58 Identities=21% Similarity=0.144 Sum_probs=31.9
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHHHhC-----CCCccEEEEecccHHHHHHHHHHHHHH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEIARN-----RGSECCIMVTQPRRISAIAIAERVAQE 125 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~~~~-----~~~~~~vl~~~Ptr~la~q~~~~~~~~ 125 (319)
+.++.+++.|++|+|||+.....+........ .....+|+++..--. ..++.+++...
T Consensus 30 ~~g~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~-~~~~~~rl~~~ 92 (193)
T PF13481_consen 30 PRGELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDS-ESQIARRLRAL 92 (193)
T ss_dssp -TTSEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS--HHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCC-HHHHHHHHHHH
Confidence 35678999999999999887666655442110 012457777644322 34555555544
No 425
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=90.27 E-value=0.33 Score=42.28 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=23.5
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l 94 (319)
-.+.+..++|+|++|||||+.....+.+..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~ 44 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETA 44 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345678899999999999988777665543
No 426
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=90.26 E-value=0.14 Score=47.12 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=15.5
Q ss_pred CCcEEEecCCCCCccchhh
Q psy496 69 LSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~ 87 (319)
+..++|+||||||||....
T Consensus 4 ~~ii~I~GpTasGKS~LAl 22 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILF 22 (300)
T ss_pred CcEEEEECCCccCHHHHHH
Confidence 4568999999999996553
No 427
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=90.22 E-value=0.34 Score=42.77 Aligned_cols=31 Identities=26% Similarity=0.257 Sum_probs=24.2
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHHH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDEI 95 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l~ 95 (319)
=.+.+..++|.|++|||||+.....+.+.+.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~ 51 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALK 51 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHh
Confidence 3567788999999999999887776665543
No 428
>KOG0741|consensus
Probab=90.07 E-value=2.1 Score=42.31 Aligned_cols=48 Identities=10% Similarity=-0.002 Sum_probs=31.5
Q ss_pred hHHHHHHhhhcCCCCC-----cEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEE
Q psy496 55 AIALINKCLTLSPILS-----PSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMV 107 (319)
Q Consensus 55 ~~~~~~~~l~~~~~~~-----~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~ 107 (319)
.+.+|..++.+..+.. .+++.||.|||||+.+.-.. .....+..+++.
T Consensus 519 il~~G~llv~qvk~s~~s~lvSvLl~Gp~~sGKTaLAA~iA-----~~S~FPFvKiiS 571 (744)
T KOG0741|consen 519 ILDDGKLLVQQVKNSERSPLVSVLLEGPPGSGKTALAAKIA-----LSSDFPFVKIIS 571 (744)
T ss_pred HHhhHHHHHHHhhccccCcceEEEEecCCCCChHHHHHHHH-----hhcCCCeEEEeC
Confidence 4566777777665443 58999999999996553332 234455666665
No 429
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=90.03 E-value=0.16 Score=44.33 Aligned_cols=21 Identities=24% Similarity=0.215 Sum_probs=18.1
Q ss_pred cCCCCCcEEEecCCCCCccch
Q psy496 65 LSPILSPSIIYTSTGCGKTTQ 85 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~ 85 (319)
....++.+.|+||.|||||+.
T Consensus 24 ~v~~Gevv~iiGpSGSGKSTl 44 (240)
T COG1126 24 SVEKGEVVVIIGPSGSGKSTL 44 (240)
T ss_pred eEcCCCEEEEECCCCCCHHHH
Confidence 456789999999999999964
No 430
>PRK13876 conjugal transfer coupling protein TraG; Provisional
Probab=89.91 E-value=0.33 Score=49.68 Aligned_cols=48 Identities=13% Similarity=-0.075 Sum_probs=36.1
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAER 121 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~ 121 (319)
..++++++.||||||||..+.+|-+-.. . ..++++-|.-|+....+..
T Consensus 142 ~g~~hvLviApTrSGKgvg~VIPnLL~~--~-----~S~VV~D~KGEl~~~Ta~~ 189 (663)
T PRK13876 142 DGPEHVLCFAPTRSGKGVGLVVPTLLTW--P-----GSAIVHDIKGENWQLTAGF 189 (663)
T ss_pred cCCceEEEEecCCCCcceeEehhhHHhC--C-----CCEEEEeCcchHHHHHHHH
Confidence 4568999999999999999988865431 1 2677778888886665553
No 431
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=89.91 E-value=2.4 Score=42.10 Aligned_cols=135 Identities=13% Similarity=0.093 Sum_probs=70.7
Q ss_pred cEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccCCC
Q psy496 71 PSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELPRK 150 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~~~ 150 (319)
..+|.-|-+-|||+.+.-.++..+.... .....+.+++|+.+-|.+.+...+......- .++........
T Consensus 88 e~fI~v~RkngKt~l~A~i~~~~~l~~~-~~~~~~~i~A~s~~qa~~~F~~ar~mv~~~~---------~l~~~~~~q~~ 157 (546)
T COG4626 88 EAFIFIPRKNGKSTLAAGIMMTALLLNW-RSGAGIYILAPSVEQAANSFNPARDMVKRDD---------DLRDLCNVQTH 157 (546)
T ss_pred EEEEEEecCCchHHHHHHHHHHHHHhhh-hcCCcEEEEeccHHHHHHhhHHHHHHHHhCc---------chhhhhccccc
Confidence 4788888999999877644444333222 2234677777999988888776655432110 01100111111
Q ss_pred CceEEEECchHHHHHHhcCC---CCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 151 RGSILYCTAGILPEVMQSDP---ILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 151 ~~~Iiv~Tpg~ll~~l~~~~---~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
+..|...--...++.+..++ +=.+..+.|+||.|..+-..+++- .++.=...+++.+++..|-..
T Consensus 158 s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~~~~~-~~~~g~~ar~~~l~~~ITT~g 225 (546)
T COG4626 158 SRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQEDMYS-EAKGGLGARPEGLVVYITTSG 225 (546)
T ss_pred eeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHHHHHH-HHHhhhccCcCceEEEEecCC
Confidence 11122222222233332222 234578999999998543223333 333223355677888887644
No 432
>KOG0060|consensus
Probab=89.90 E-value=0.14 Score=50.65 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=24.6
Q ss_pred HhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHH
Q psy496 61 KCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIA 96 (319)
Q Consensus 61 ~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~ 96 (319)
++-...+.+++++|+||+|||||..+ =++-.+|.
T Consensus 453 ~Ls~~V~~g~~LLItG~sG~GKtSLl--RvlggLWp 486 (659)
T KOG0060|consen 453 NLSLEVPSGQNLLITGPSGCGKTSLL--RVLGGLWP 486 (659)
T ss_pred eeeeEecCCCeEEEECCCCCchhHHH--HHHhcccc
Confidence 44455778999999999999999543 33444554
No 433
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=89.78 E-value=0.41 Score=48.66 Aligned_cols=47 Identities=19% Similarity=0.054 Sum_probs=36.1
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAER 121 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~ 121 (319)
..+++++.||||||||..+.+|-+- ... ..++++-|..|++...+..
T Consensus 210 g~~H~lv~ApTgsGKgvg~VIPnLL--~~~-----gS~VV~DpKgE~~~~Ta~~ 256 (623)
T TIGR02767 210 GSTHMIFFAGSGGFKTTSVVVPTAL--KYG-----GPLVCLDPSTEVAPMVCEH 256 (623)
T ss_pred CCceEEEEeCCCCCccceeehhhhh--cCC-----CCEEEEEChHHHHHHHHHH
Confidence 4578999999999999999999632 111 2688888999997766653
No 434
>PHA02244 ATPase-like protein
Probab=89.76 E-value=0.3 Score=46.32 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=21.8
Q ss_pred HHhhhcCCCCCcEEEecCCCCCccchhh
Q psy496 60 NKCLTLSPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 60 ~~~l~~~~~~~~vli~apTGSGKT~~~~ 87 (319)
..+...+..+.+++|.||||||||..+.
T Consensus 110 ~ri~r~l~~~~PVLL~GppGtGKTtLA~ 137 (383)
T PHA02244 110 ADIAKIVNANIPVFLKGGAGSGKNHIAE 137 (383)
T ss_pred HHHHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 4555556677899999999999997653
No 435
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=89.68 E-value=0.52 Score=47.92 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=20.7
Q ss_pred EEEECchHHHHHHhcCCCCCCccEEEEecccc
Q psy496 154 ILYCTAGILPEVMQSDPILSGVSHIVMDEIHE 185 (319)
Q Consensus 154 Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~ 185 (319)
-+=+-||++++-++.... .=-++++||+|.
T Consensus 399 YIGamPGrIiQ~mkka~~--~NPv~LLDEIDK 428 (782)
T COG0466 399 YIGAMPGKIIQGMKKAGV--KNPVFLLDEIDK 428 (782)
T ss_pred ccccCChHHHHHHHHhCC--cCCeEEeechhh
Confidence 445579999999843221 123689999997
No 436
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=89.65 E-value=0.21 Score=46.47 Aligned_cols=48 Identities=23% Similarity=0.075 Sum_probs=32.5
Q ss_pred HhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHH
Q psy496 61 KCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRIS 114 (319)
Q Consensus 61 ~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~l 114 (319)
.+..+....++++++|+||||||+.. .+++..+-. ..+++.+.-+.|+
T Consensus 135 yL~~~ie~~~siii~G~t~sGKTt~l-nall~~Ip~-----~~rivtIEdt~E~ 182 (312)
T COG0630 135 YLWLAIEARKSIIICGGTASGKTTLL-NALLDFIPP-----EERIVTIEDTPEL 182 (312)
T ss_pred HHHHHHHcCCcEEEECCCCCCHHHHH-HHHHHhCCc-----hhcEEEEeccccc
Confidence 35666777899999999999999764 333333222 3477776666554
No 437
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=89.64 E-value=1.1 Score=41.98 Aligned_cols=51 Identities=14% Similarity=0.195 Sum_probs=32.6
Q ss_pred HHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEec
Q psy496 161 ILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMS 213 (319)
Q Consensus 161 ~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lS 213 (319)
.+.+.+...+.....+++|+|++|. ++....-..++.+...++...+|+.|
T Consensus 100 ~l~~~~~~~p~~~~~kV~iiEp~~~--Ld~~a~naLLk~LEep~~~~~~Ilvt 150 (325)
T PRK08699 100 EIIDNVYLTSVRGGLRVILIHPAES--MNLQAANSLLKVLEEPPPQVVFLLVS 150 (325)
T ss_pred HHHHHHhhCcccCCceEEEEechhh--CCHHHHHHHHHHHHhCcCCCEEEEEe
Confidence 3445555566678899999999998 56665666666555544444455543
No 438
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=89.54 E-value=0.69 Score=48.13 Aligned_cols=101 Identities=17% Similarity=0.202 Sum_probs=0.0
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccC
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELP 148 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~ 148 (319)
...+++.||+|||||+.+ +.++...+... ..+...+-..
T Consensus 487 ~~giLL~GppGtGKT~la---------------------------------kalA~e~~~~f--------i~v~~~~l~~ 525 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLA---------------------------------KAVATESGANF--------IAVRGPEILS 525 (733)
T ss_pred CceEEEECCCCCCHHHHH---------------------------------HHHHHhcCCCE--------EEEehHHHhh
Q ss_pred CCCceEEEECchHHHHHHhcCCCCCCccEEEEecccc----------cccchhHHHHHHHhhhccccCceEEEeccc
Q psy496 149 RKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHE----------RSMISDFLLAILKDVTDKRKDLKLILMSAT 215 (319)
Q Consensus 149 ~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~----------~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT 215 (319)
-.++-.+..++.+.....-..-.+++|||+|. .+.....+-.++..+-...+...++++-||
T Consensus 526 -----~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aT 597 (733)
T TIGR01243 526 -----KWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAAT 597 (733)
T ss_pred -----cccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeC
No 439
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=89.51 E-value=0.17 Score=43.04 Aligned_cols=20 Identities=15% Similarity=0.194 Sum_probs=16.4
Q ss_pred CCcEEEecCCCCCccchhhH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l 88 (319)
++.++|.||+|||||+.+-.
T Consensus 2 g~~i~l~G~sGsGKsTl~~~ 21 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAA 21 (186)
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45789999999999987643
No 440
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=89.48 E-value=0.19 Score=42.77 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=15.5
Q ss_pred CCcEEEecCCCCCccchhhHHH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFI 90 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~i 90 (319)
...++|+||.|||||..|....
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~ 24 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLV 24 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHh
Confidence 3569999999999997765443
No 441
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=89.47 E-value=0.2 Score=47.07 Aligned_cols=42 Identities=21% Similarity=0.154 Sum_probs=28.2
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRIS 114 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~l 114 (319)
....+++++|+||||||+.+- .++..+.. ..+++++.-+.|+
T Consensus 176 ~~~~~ili~G~tGsGKTTll~-al~~~i~~-----~~riv~iEd~~El 217 (340)
T TIGR03819 176 AARLAFLISGGTGSGKTTLLS-ALLALVAP-----DERIVLVEDAAEL 217 (340)
T ss_pred hCCCeEEEECCCCCCHHHHHH-HHHccCCC-----CCcEEEECCccee
Confidence 456799999999999997653 23332221 2367777777676
No 442
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=89.35 E-value=0.33 Score=48.83 Aligned_cols=55 Identities=18% Similarity=0.156 Sum_probs=38.1
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHH-HHHHHHhc
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIA-ERVAQERD 127 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~-~~~~~~~~ 127 (319)
-+.|++..++-+|||......+...+... .+.+++++||.++|.... .++.-.+.
T Consensus 33 v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~----P~~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 33 VREVVVMKSAQVGKTELLLNWIGYSIDQD----PGPMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred ccEEEEEEcchhhHhHHHHhhceEEEEeC----CCCEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 46799999999999996555443333222 247888889999999875 44554443
No 443
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=89.27 E-value=0.44 Score=41.72 Aligned_cols=29 Identities=24% Similarity=0.266 Sum_probs=23.1
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l 94 (319)
.+.+..++|+|++|||||......+.+..
T Consensus 20 i~~g~i~~i~G~~GsGKT~l~~~la~~~~ 48 (225)
T PRK09361 20 FERGTITQIYGPPGSGKTNICLQLAVEAA 48 (225)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45678899999999999988776665544
No 444
>KOG2035|consensus
Probab=89.24 E-value=1.4 Score=40.10 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=31.3
Q ss_pred CCccEEEEecccccccchhHHHHHHHhhhccccCceEEEeccc
Q psy496 173 SGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSAT 215 (319)
Q Consensus 173 ~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT 215 (319)
..+++|||.|+|+ +..|...++.+-+.+...+.|+|+.--.
T Consensus 126 r~fKvvvi~ead~--LT~dAQ~aLRRTMEkYs~~~RlIl~cns 166 (351)
T KOG2035|consen 126 RPFKVVVINEADE--LTRDAQHALRRTMEKYSSNCRLILVCNS 166 (351)
T ss_pred cceEEEEEechHh--hhHHHHHHHHHHHHHHhcCceEEEEecC
Confidence 4689999999999 7777777777777777778888776333
No 445
>KOG0386|consensus
Probab=89.22 E-value=0.26 Score=51.51 Aligned_cols=155 Identities=16% Similarity=0.053 Sum_probs=74.4
Q ss_pred cccchhhH-HHHHHhhhcC-CCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHh
Q psy496 49 QPRRISAI-ALINKCLTLS-PILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQER 126 (319)
Q Consensus 49 Q~~~ip~~-~~~~~~l~~~-~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~ 126 (319)
|-..++.+ ++|-.=+.+. ++|=|=++.-++|-|||.+-.-.+..-....+..+...|++ |+-.|.. |..++
T Consensus 391 ~GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~Lviv--PlstL~N-----W~~Ef 463 (1157)
T KOG0386|consen 391 QGGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIV--PLSTLVN-----WSSEF 463 (1157)
T ss_pred cCCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEec--cccccCC-----chhhc
Confidence 33344433 2333333334 35557888999999999776544433222222222234444 8766543 33333
Q ss_pred ccccCCCCceEEEEEe-----cccccCCCCceEEEECchHHHHHHhcCCCCCC--ccEEEEecccccccchhHHHHHHHh
Q psy496 127 DEQCGRPGSSVGYQIR-----LEKELPRKRGSILYCTAGILPEVMQSDPILSG--VSHIVMDEIHERSMISDFLLAILKD 199 (319)
Q Consensus 127 ~~~~~~~g~~vg~~~~-----~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~--v~~vViDEah~~~~~~~~~~~~l~~ 199 (319)
....-.....++.+.. ........+.+|+++|.+.+++ ....|+. ..++||||.|++.....-+-..+
T Consensus 464 ~kWaPSv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiik---dk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L-- 538 (1157)
T KOG0386|consen 464 PKWAPSVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIK---DKALLSKISWKYMIIDEGHRMKNAICKLTDTL-- 538 (1157)
T ss_pred cccccceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcC---CHHHHhccCCcceeecccccccchhhHHHHHh--
Confidence 2221000111111111 1111112466899999988765 2222333 56789999997432221111111
Q ss_pred hhccccCceEEEecccc
Q psy496 200 VTDKRKDLKLILMSATL 216 (319)
Q Consensus 200 ~~~~~~~~qiv~lSAT~ 216 (319)
.......+.++++.|.
T Consensus 539 -~t~y~~q~RLLLTGTP 554 (1157)
T KOG0386|consen 539 -NTHYRAQRRLLLTGTP 554 (1157)
T ss_pred -hccccchhhhhhcCCh
Confidence 1112233567778887
No 446
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=89.19 E-value=0.57 Score=43.65 Aligned_cols=42 Identities=21% Similarity=0.095 Sum_probs=29.5
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEeccc
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPR 111 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Pt 111 (319)
=.+.+..+.|.||+|||||+..+..+.+..... ..++++..-
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g-----~~v~yId~E 92 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAG-----GTAAFIDAE 92 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-----CcEEEEccc
Confidence 466778999999999999988777665543322 255665443
No 447
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=89.18 E-value=0.76 Score=45.38 Aligned_cols=32 Identities=28% Similarity=0.361 Sum_probs=26.6
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHHHH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDEIA 96 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l~~ 96 (319)
=.+.+..++|+|++|||||+.....+.+.+..
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~ 48 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIH 48 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 35678899999999999999988887776554
No 448
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=89.14 E-value=0.49 Score=48.33 Aligned_cols=48 Identities=19% Similarity=0.103 Sum_probs=36.6
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
.++++++.||||||||..+.+|-+- .. ...++++-|..|+....+...
T Consensus 223 g~~H~Lv~ApTgsGKt~g~VIPnLL---~~----~gS~VV~DpKgEl~~~Ta~~R 270 (641)
T PRK13822 223 GSTHGLVFAGSGGFKTTSVVVPTAL---KW----GGPLVVLDPSTEVAPMVSEHR 270 (641)
T ss_pred CCceEEEEeCCCCCccceEehhhhh---cC----CCCEEEEeCcHHHHHHHHHHH
Confidence 4578999999999999999999642 11 136888889999877666533
No 449
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=88.93 E-value=0.9 Score=37.87 Aligned_cols=25 Identities=32% Similarity=0.279 Sum_probs=18.8
Q ss_pred cEEEecCCCCCccchhhHHHHHHHH
Q psy496 71 PSIIYTSTGCGKTTQVPQFILDDEI 95 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l~il~~l~ 95 (319)
-+.|..++|.|||+++.--.+...-
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~ 28 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALG 28 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4667788899999998766666543
No 450
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=88.91 E-value=0.45 Score=42.84 Aligned_cols=32 Identities=28% Similarity=0.180 Sum_probs=23.9
Q ss_pred hhcCCCCCcEEEecCCCCCccchhhHHHHHHH
Q psy496 63 LTLSPILSPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 63 l~~~~~~~~vli~apTGSGKT~~~~l~il~~l 94 (319)
+.-...+..++|.|++|+|||+.....+.+..
T Consensus 24 ~gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~ 55 (271)
T cd01122 24 TKGLRKGELIILTAGTGVGKTTFLREYALDLI 55 (271)
T ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 33455678899999999999987766655543
No 451
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=88.90 E-value=0.41 Score=41.27 Aligned_cols=28 Identities=25% Similarity=0.284 Sum_probs=18.3
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l 94 (319)
..+.+++|.|.||||||...-..+...+
T Consensus 36 ~~~~h~li~G~tgsGKS~~l~~ll~~l~ 63 (205)
T PF01580_consen 36 KKNPHLLIAGATGSGKSTLLRTLLLSLA 63 (205)
T ss_dssp GGS-SEEEE--TTSSHHHHHHHHHHHHH
T ss_pred CCCceEEEEcCCCCCccHHHHHHHHHHH
Confidence 3445899999999999988765544443
No 452
>PRK13695 putative NTPase; Provisional
Probab=88.82 E-value=2.1 Score=35.85 Aligned_cols=18 Identities=39% Similarity=0.316 Sum_probs=15.3
Q ss_pred cEEEecCCCCCccchhhH
Q psy496 71 PSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l 88 (319)
.++|+|++|||||+.+..
T Consensus 2 ~i~ltG~~G~GKTTll~~ 19 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLK 19 (174)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999988764
No 453
>PRK00300 gmk guanylate kinase; Provisional
Probab=88.79 E-value=0.27 Score=42.25 Aligned_cols=19 Identities=26% Similarity=0.256 Sum_probs=16.3
Q ss_pred CCCcEEEecCCCCCccchh
Q psy496 68 ILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~ 86 (319)
.++.++|.||+|||||+..
T Consensus 4 ~g~~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLV 22 (205)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5678999999999999754
No 454
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=88.77 E-value=0.21 Score=49.25 Aligned_cols=26 Identities=27% Similarity=0.222 Sum_probs=18.9
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l 94 (319)
.+..++++||||||||+.. ..+++.+
T Consensus 241 ~~GlilitGptGSGKTTtL-~a~L~~l 266 (486)
T TIGR02533 241 PHGIILVTGPTGSGKTTTL-YAALSRL 266 (486)
T ss_pred CCCEEEEEcCCCCCHHHHH-HHHHhcc
Confidence 3457899999999999876 3344544
No 455
>PRK07261 topology modulation protein; Provisional
Probab=88.76 E-value=0.21 Score=42.05 Aligned_cols=18 Identities=28% Similarity=0.338 Sum_probs=15.3
Q ss_pred cEEEecCCCCCccchhhH
Q psy496 71 PSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l 88 (319)
.++|.|++|||||+.+-.
T Consensus 2 ri~i~G~~GsGKSTla~~ 19 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARK 19 (171)
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 478999999999987744
No 456
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=88.72 E-value=0.26 Score=41.41 Aligned_cols=18 Identities=33% Similarity=0.327 Sum_probs=15.0
Q ss_pred CCcEEEecCCCCCccchh
Q psy496 69 LSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~ 86 (319)
++.++|.||+|||||+..
T Consensus 1 g~ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLV 18 (180)
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 356899999999999854
No 457
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=88.67 E-value=0.26 Score=39.89 Aligned_cols=15 Identities=27% Similarity=0.525 Sum_probs=12.9
Q ss_pred EEEecCCCCCccchh
Q psy496 72 SIIYTSTGCGKTTQV 86 (319)
Q Consensus 72 vli~apTGSGKT~~~ 86 (319)
++|+||||||||+..
T Consensus 2 i~i~GpsGsGKstl~ 16 (137)
T cd00071 2 IVLSGPSGVGKSTLL 16 (137)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999744
No 458
>PRK08118 topology modulation protein; Reviewed
Probab=88.67 E-value=0.21 Score=41.87 Aligned_cols=16 Identities=38% Similarity=0.474 Sum_probs=14.0
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.++|.|++|||||+..
T Consensus 3 rI~I~G~~GsGKSTla 18 (167)
T PRK08118 3 KIILIGSGGSGKSTLA 18 (167)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999754
No 459
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=88.46 E-value=0.22 Score=41.88 Aligned_cols=18 Identities=22% Similarity=0.311 Sum_probs=15.5
Q ss_pred CcEEEecCCCCCccchhh
Q psy496 70 SPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~ 87 (319)
+.++|.||+|||||+..-
T Consensus 2 ~~~~i~G~sGsGKttl~~ 19 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLD 19 (179)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 468899999999998764
No 460
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=88.42 E-value=0.24 Score=41.66 Aligned_cols=19 Identities=16% Similarity=0.146 Sum_probs=16.1
Q ss_pred CCcEEEecCCCCCccchhh
Q psy496 69 LSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~ 87 (319)
++.++++|++|||||+..-
T Consensus 2 ~~~i~l~G~~gsGKst~a~ 20 (175)
T cd00227 2 GRIIILNGGSSAGKSSIAR 20 (175)
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 4678999999999998763
No 461
>PLN02165 adenylate isopentenyltransferase
Probab=88.41 E-value=0.23 Score=46.37 Aligned_cols=23 Identities=22% Similarity=0.186 Sum_probs=18.7
Q ss_pred CCCCCcEEEecCCCCCccchhhH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l 88 (319)
...+..++|.||||||||+.+..
T Consensus 40 ~~~g~iivIiGPTGSGKStLA~~ 62 (334)
T PLN02165 40 NCKDKVVVIMGATGSGKSRLSVD 62 (334)
T ss_pred CCCCCEEEEECCCCCcHHHHHHH
Confidence 44567899999999999977644
No 462
>TIGR02784 addA_alphas double-strand break repair helicase AddA, alphaproteobacterial type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the alphaproteobacteria (as modeled here) and the Firmicutes, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=88.40 E-value=0.94 Score=49.60 Aligned_cols=60 Identities=17% Similarity=0.179 Sum_probs=45.3
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhcc
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDE 128 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~ 128 (319)
...++++|.|+-|||||.....=++..+... . ....|+++.-|+..|..+..++...+..
T Consensus 8 dp~~~~~~~a~agsgkt~~l~~~~~~~~~~~-~-~~~~i~~~t~t~~aa~em~~Ri~~~L~~ 67 (1141)
T TIGR02784 8 DPKTSAWVSANAGSGKTHVLTQRVIRLLLNG-V-PPSKILCLTYTKAAAAEMQNRVFDRLGE 67 (1141)
T ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHHcC-C-CCCeEEEEecCHHHHHHHHHHHHHHHHH
Confidence 3456799999999999988776666555432 2 2348899999999999998888776643
No 463
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=88.33 E-value=3.7 Score=40.16 Aligned_cols=52 Identities=15% Similarity=0.274 Sum_probs=29.4
Q ss_pred hhHHHHHHhhhc-CCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEE
Q psy496 54 SAIALINKCLTL-SPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMV 107 (319)
Q Consensus 54 p~~~~~~~~l~~-~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~ 107 (319)
|++.+-.+.+.. ++.+-+|+|.|+|||||-+++- .++..-.+.+++...|-|
T Consensus 148 ~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr--~IH~~S~R~~~PFVavNc 200 (464)
T COG2204 148 PAMQQLRRLIAKVAPSDASVLITGESGTGKELVAR--AIHQASPRAKGPFIAVNC 200 (464)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHH--HHHhhCcccCCCceeeec
Confidence 334443344433 4566789999999999996652 223333333444444444
No 464
>PRK00131 aroK shikimate kinase; Reviewed
Probab=88.26 E-value=0.28 Score=40.63 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=16.8
Q ss_pred CCCcEEEecCCCCCccchhh
Q psy496 68 ILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~ 87 (319)
++..++++|++|||||+..-
T Consensus 3 ~~~~i~l~G~~GsGKstla~ 22 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGR 22 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHH
Confidence 45679999999999998764
No 465
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=88.22 E-value=0.22 Score=42.01 Aligned_cols=17 Identities=29% Similarity=0.393 Sum_probs=14.3
Q ss_pred CcEEEecCCCCCccchh
Q psy496 70 SPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~ 86 (319)
.++++.||||+|||..+
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 46899999999999644
No 466
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=88.21 E-value=0.24 Score=43.73 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=19.2
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
...+.++.+.|.||+|||||+..
T Consensus 26 l~i~~Ge~vaI~GpSGSGKSTLL 48 (226)
T COG1136 26 LEIEAGEFVAIVGPSGSGKSTLL 48 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34667899999999999999753
No 467
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=88.19 E-value=0.35 Score=48.11 Aligned_cols=21 Identities=33% Similarity=0.463 Sum_probs=16.7
Q ss_pred CCCcEEEecCCCCCccchhhH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l 88 (319)
..+.++++||+|||||+++-.
T Consensus 44 ~~~iLlLtGP~G~GKtttv~~ 64 (519)
T PF03215_consen 44 PKRILLLTGPSGCGKTTTVKV 64 (519)
T ss_pred CcceEEEECCCCCCHHHHHHH
Confidence 345788899999999987633
No 468
>KOG0990|consensus
Probab=88.10 E-value=1.9 Score=39.94 Aligned_cols=38 Identities=16% Similarity=0.254 Sum_probs=25.2
Q ss_pred CccEEEEecccccccchhHHHHHHHhhhccccCceEEEec
Q psy496 174 GVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMS 213 (319)
Q Consensus 174 ~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lS 213 (319)
.++++|+||||. +..+...++.+.+.....+.++...+
T Consensus 131 ~fKlvILDEADa--MT~~AQnALRRviek~t~n~rF~ii~ 168 (360)
T KOG0990|consen 131 AFKLVILDEADA--MTRDAQNALRRVIEKYTANTRFATIS 168 (360)
T ss_pred ceeEEEecchhH--hhHHHHHHHHHHHHHhccceEEEEec
Confidence 689999999998 45554444445555555666666443
No 469
>TIGR03754 conj_TOL_TraD conjugative coupling factor TraD, TOL family. Members of this protein are assigned by homology to the TraD family of conjugative coupling factor. This particular clade serves as a marker for an extended gene region that occurs occasionally on plasmids, including the toluene catabolism TOL plasmid. More commonly, the gene region is chromosomal, flanked by various markers of conjugative transfer and insertion.
Probab=88.06 E-value=0.53 Score=47.82 Aligned_cols=41 Identities=20% Similarity=0.246 Sum_probs=30.9
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRI 113 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~ 113 (319)
...+.+|.|+||||||..+.+.+.+.+... ..++++-|...
T Consensus 179 ~~gHtlV~GtTGsGKT~l~~~li~q~i~~g-----~~vi~fDpkgD 219 (643)
T TIGR03754 179 RVGHTLVLGTTRVGKTRLAELLITQDIRRG-----DVVIVFDPKGD 219 (643)
T ss_pred ccCceEEECCCCCCHHHHHHHHHHHHHHcC-----CeEEEEeCCCC
Confidence 457899999999999999887666655432 26777778663
No 470
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=88.02 E-value=0.39 Score=38.79 Aligned_cols=28 Identities=21% Similarity=0.115 Sum_probs=22.0
Q ss_pred HHHhhhcCCCCCcEEEecCCCCCccchh
Q psy496 59 INKCLTLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 59 ~~~~l~~~~~~~~vli~apTGSGKT~~~ 86 (319)
++.+....+.+..+++.|+.|+|||+..
T Consensus 12 ~~~l~~~l~~~~~i~l~G~lGaGKTtl~ 39 (133)
T TIGR00150 12 GKAFAKPLDFGTVVLLKGDLGAGKTTLV 39 (133)
T ss_pred HHHHHHhCCCCCEEEEEcCCCCCHHHHH
Confidence 4455555677889999999999999654
No 471
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=88.00 E-value=0.48 Score=39.91 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=29.2
Q ss_pred EEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 72 SIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 72 vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
++|.|++|||||......+.. . ..+++++...+..-....+++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~----~~~~~y~at~~~~d~em~~rI~~ 46 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----L----GGPVTYIATAEAFDDEMAERIAR 46 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----c----CCCeEEEEccCcCCHHHHHHHHH
Confidence 689999999999887655432 1 12566665665555555555544
No 472
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=87.54 E-value=0.26 Score=42.75 Aligned_cols=19 Identities=32% Similarity=0.067 Sum_probs=15.9
Q ss_pred CCCcEEEecCCCCCccchh
Q psy496 68 ILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~ 86 (319)
.+..+.|+|++|||||+..
T Consensus 5 ~g~vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVA 23 (207)
T ss_pred CeEEEEEECCCCCCHHHHH
Confidence 4567889999999999754
No 473
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=87.45 E-value=0.36 Score=37.45 Aligned_cols=23 Identities=22% Similarity=0.105 Sum_probs=18.9
Q ss_pred CCCCCcEEEecCCCCCccchhhH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l 88 (319)
...++.+.|.||+|||||+.+.+
T Consensus 12 i~~ge~v~I~GpSGsGKSTLl~~ 34 (107)
T cd00820 12 VYGKVGVLITGDSGIGKTELALE 34 (107)
T ss_pred EcCCEEEEEEcCCCCCHHHHHHH
Confidence 34567899999999999987655
No 474
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=87.45 E-value=0.84 Score=42.61 Aligned_cols=44 Identities=18% Similarity=0.095 Sum_probs=30.2
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRI 113 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~ 113 (319)
=.+.+..+.|.||+|||||+..+..+.+..... ..++++.+-..
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g-----~~~vyId~E~~ 94 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLG-----GTVAFIDAEHA 94 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-----CCEEEECcccc
Confidence 356678899999999999988777665543222 25666655433
No 475
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=87.41 E-value=0.29 Score=42.55 Aligned_cols=22 Identities=18% Similarity=0.131 Sum_probs=15.1
Q ss_pred cCCCCCcEEEecCCCCCccchh
Q psy496 65 LSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~ 86 (319)
++..+.++++.||.|||||..+
T Consensus 18 AAaG~h~lLl~GppGtGKTmlA 39 (206)
T PF01078_consen 18 AAAGGHHLLLIGPPGTGKTMLA 39 (206)
T ss_dssp HHHCC--EEEES-CCCTHHHHH
T ss_pred HHcCCCCeEEECCCCCCHHHHH
Confidence 3445689999999999999654
No 476
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=87.39 E-value=0.4 Score=40.09 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=17.0
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHHHHh
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDEIAR 97 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~ 97 (319)
......+++|.|+.|+|||...-. +++.+...
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~-~~~~~~~~ 51 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRA-LLDRLAER 51 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHH-HHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHH-HHHHHHhc
Confidence 344567899999999999976543 44444443
No 477
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=87.35 E-value=0.46 Score=47.52 Aligned_cols=51 Identities=24% Similarity=0.262 Sum_probs=32.5
Q ss_pred HHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhH
Q psy496 34 EIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 34 ~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l 88 (319)
|.+..|........-|..++..+.. . ..++..+.+++.||+|+|||+++-.
T Consensus 55 ~~~~~rp~~f~~iiGqs~~i~~l~~---a-l~~~~~~~vLi~Ge~GtGKt~lAr~ 105 (531)
T TIGR02902 55 LSEKTRPKSFDEIIGQEEGIKALKA---A-LCGPNPQHVIIYGPPGVGKTAAARL 105 (531)
T ss_pred HHHhhCcCCHHHeeCcHHHHHHHHH---H-HhCCCCceEEEECCCCCCHHHHHHH
Confidence 3344443333334567766655542 2 2456678899999999999987643
No 478
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=87.29 E-value=0.3 Score=38.90 Aligned_cols=21 Identities=24% Similarity=0.158 Sum_probs=17.7
Q ss_pred CCCCCcEEEecCCCCCccchh
Q psy496 66 SPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~ 86 (319)
...++.+.|.|++|||||+.+
T Consensus 8 i~~g~~~~i~G~nGsGKStLl 28 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLL 28 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHH
T ss_pred EcCCCEEEEEccCCCccccce
Confidence 346788999999999999765
No 479
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=87.16 E-value=0.33 Score=34.23 Aligned_cols=15 Identities=33% Similarity=0.432 Sum_probs=13.0
Q ss_pred EEEecCCCCCccchh
Q psy496 72 SIIYTSTGCGKTTQV 86 (319)
Q Consensus 72 vli~apTGSGKT~~~ 86 (319)
+.++|+.|||||+..
T Consensus 2 i~i~G~~gsGKst~~ 16 (69)
T cd02019 2 IAITGGSGSGKSTVA 16 (69)
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999765
No 480
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=87.05 E-value=0.92 Score=47.11 Aligned_cols=105 Identities=21% Similarity=0.165 Sum_probs=59.5
Q ss_pred EEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccC---
Q psy496 72 SIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELP--- 148 (319)
Q Consensus 72 vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~--- 148 (319)
-+.---||=|||+...+|..-....+. ...++. ..-=||.--+..+...+... |..+|.....-....
T Consensus 96 ~iaEM~TGEGKTL~atlp~ylnaL~gk---gVhvVT--vNdYLA~RDae~m~~l~~~L----GlsvG~~~~~m~~~ek~~ 166 (822)
T COG0653 96 DIAEMRTGEGKTLVATLPAYLNALAGK---GVHVVT--VNDYLARRDAEWMGPLYEFL----GLSVGVILAGMSPEEKRA 166 (822)
T ss_pred ceeeeecCCchHHHHHHHHHHHhcCCC---CcEEee--ehHHhhhhCHHHHHHHHHHc----CCceeeccCCCChHHHHH
Confidence 344444999999999888753333322 234443 33334444444444443333 788886655322111
Q ss_pred CCCceEEEECchHH-----HHHHhc---CCCCCCccEEEEecccc
Q psy496 149 RKRGSILYCTAGIL-----PEVMQS---DPILSGVSHIVMDEIHE 185 (319)
Q Consensus 149 ~~~~~Iiv~Tpg~l-----l~~l~~---~~~l~~v~~vViDEah~ 185 (319)
.-.++|.++|...+ .+.+.. ......+.+-|+||+|.
T Consensus 167 aY~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDS 211 (822)
T COG0653 167 AYACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDS 211 (822)
T ss_pred HHhcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhh
Confidence 12578999998444 333322 22255688899999996
No 481
>PRK09354 recA recombinase A; Provisional
Probab=86.98 E-value=0.92 Score=42.74 Aligned_cols=44 Identities=20% Similarity=0.095 Sum_probs=30.6
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRI 113 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~ 113 (319)
=.+.+..+.|.||+|||||+..+..+.+..... ..++++..-..
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G-----~~~~yId~E~s 99 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAG-----GTAAFIDAEHA 99 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-----CcEEEECCccc
Confidence 356678899999999999998877776654322 25666544433
No 482
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=86.90 E-value=0.99 Score=47.26 Aligned_cols=19 Identities=21% Similarity=0.085 Sum_probs=16.0
Q ss_pred CCCcEEEecCCCCCccchh
Q psy496 68 ILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~ 86 (319)
.+..+++.||+|+|||+.+
T Consensus 348 ~g~~i~l~GppG~GKTtl~ 366 (784)
T PRK10787 348 KGPILCLVGPPGVGKTSLG 366 (784)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4567999999999999665
No 483
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=86.83 E-value=0.26 Score=40.74 Aligned_cols=15 Identities=27% Similarity=0.448 Sum_probs=12.6
Q ss_pred EEEecCCCCCccchh
Q psy496 72 SIIYTSTGCGKTTQV 86 (319)
Q Consensus 72 vli~apTGSGKT~~~ 86 (319)
++++||+|||||+.+
T Consensus 1 i~l~G~~GsGKSTla 15 (163)
T TIGR01313 1 FVLMGVAGSGKSTIA 15 (163)
T ss_pred CEEECCCCCCHHHHH
Confidence 468999999999665
No 484
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=86.81 E-value=2.5 Score=41.45 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=26.3
Q ss_pred cccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchh
Q psy496 47 VTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 47 ~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~ 86 (319)
+=|..++-.+++.-++++. .+.+|+|+|+||+||-+.+
T Consensus 226 IG~S~am~~ll~~i~~VA~--Sd~tVLi~GETGtGKElvA 263 (550)
T COG3604 226 IGRSPAMRQLLKEIEVVAK--SDSTVLIRGETGTGKELVA 263 (550)
T ss_pred eecCHHHHHHHHHHHHHhc--CCCeEEEecCCCccHHHHH
Confidence 4455566555555555544 4588999999999998554
No 485
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=86.76 E-value=1.3 Score=41.14 Aligned_cols=30 Identities=17% Similarity=0.151 Sum_probs=23.2
Q ss_pred hcCCCCCcEEEecCCCCCccchhhHHHHHH
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQVPQFILDD 93 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~~l~il~~ 93 (319)
........++|.|+.|||||.+....+..+
T Consensus 18 ~~~~~~~r~vL~G~~GsGKS~~L~q~~~~A 47 (309)
T PF10236_consen 18 DKSSKNNRYVLTGERGSGKSVLLAQAVHYA 47 (309)
T ss_pred cccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 344556789999999999998887766544
No 486
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=86.73 E-value=0.69 Score=46.58 Aligned_cols=28 Identities=21% Similarity=0.198 Sum_probs=20.6
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEI 95 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~ 95 (319)
...+++++.|+||||||.++ ..++..+.
T Consensus 174 ~e~~h~li~G~tGsGKs~~i-~~ll~~~~ 201 (566)
T TIGR02759 174 SETQHILIHGTTGSGKSVAI-RKLLRWIR 201 (566)
T ss_pred ccccceEEEcCCCCCHHHHH-HHHHHHHH
Confidence 34678999999999999754 33555543
No 487
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=86.51 E-value=2.6 Score=41.35 Aligned_cols=51 Identities=20% Similarity=0.122 Sum_probs=36.8
Q ss_pred EEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHh
Q psy496 73 IIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQER 126 (319)
Q Consensus 73 li~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~ 126 (319)
.|.|=.|||||....+-. ..-..+.+.-+|+++.=|+.|+.++...+.+++
T Consensus 180 rIrGLAGSGKT~~La~Ka---a~lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 180 RIRGLAGSGKTELLAHKA---AELHSKNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred hhhcccCCCchhHHHHHH---HHHhcCCCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 566778999997764432 223345667799999999999998877766653
No 488
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=86.50 E-value=0.34 Score=38.59 Aligned_cols=34 Identities=21% Similarity=0.099 Sum_probs=23.9
Q ss_pred HHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHH
Q psy496 59 INKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDD 93 (319)
Q Consensus 59 ~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~ 93 (319)
++.+....+++..+++.|+-|||||+..- .+.+.
T Consensus 5 a~~l~~~l~~g~vi~L~GdLGaGKTtf~r-~l~~~ 38 (123)
T PF02367_consen 5 AKKLAQILKPGDVILLSGDLGAGKTTFVR-GLARA 38 (123)
T ss_dssp HHHHHHHHSS-EEEEEEESTTSSHHHHHH-HHHHH
T ss_pred HHHHHHhCCCCCEEEEECCCCCCHHHHHH-HHHHH
Confidence 45555666788899999999999996543 34443
No 489
>PF13173 AAA_14: AAA domain
Probab=86.30 E-value=0.51 Score=37.48 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=18.0
Q ss_pred CCCcEEEecCCCCCccchhhHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQF 89 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~ 89 (319)
|++.++|.||.|+|||+.....
T Consensus 1 n~~~~~l~G~R~vGKTtll~~~ 22 (128)
T PF13173_consen 1 NRKIIILTGPRGVGKTTLLKQL 22 (128)
T ss_pred CCCeEEEECCCCCCHHHHHHHH
Confidence 4678999999999999876444
No 490
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=86.28 E-value=1.1 Score=38.39 Aligned_cols=35 Identities=29% Similarity=0.238 Sum_probs=24.6
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEec
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQ 109 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~ 109 (319)
.-++|....|=|||++++=-++..+-. ..+|.+++
T Consensus 29 Gli~V~TG~GKGKTTAAlG~alRa~Gh-----G~rv~vvQ 63 (198)
T COG2109 29 GLIIVFTGNGKGKTTAALGLALRALGH-----GLRVGVVQ 63 (198)
T ss_pred CeEEEEecCCCChhHHHHHHHHHHhcC-----CCEEEEEE
Confidence 447778889999999987777765422 23677665
No 491
>PRK05541 adenylylsulfate kinase; Provisional
Probab=86.17 E-value=0.41 Score=40.19 Aligned_cols=21 Identities=33% Similarity=0.188 Sum_probs=17.4
Q ss_pred CCCCcEEEecCCCCCccchhh
Q psy496 67 PILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~ 87 (319)
+.+..++++|++|||||+..-
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~ 25 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAK 25 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHH
Confidence 456689999999999998763
No 492
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=86.15 E-value=0.36 Score=44.73 Aligned_cols=18 Identities=28% Similarity=0.255 Sum_probs=15.3
Q ss_pred CcEEEecCCCCCccchhh
Q psy496 70 SPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~ 87 (319)
..++|+||||||||....
T Consensus 5 ~~i~i~GptgsGKt~la~ 22 (307)
T PRK00091 5 KVIVIVGPTASGKTALAI 22 (307)
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 468899999999997764
No 493
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=86.11 E-value=0.76 Score=45.66 Aligned_cols=36 Identities=22% Similarity=0.270 Sum_probs=27.8
Q ss_pred Hhh-hcCCCCCcEEEecCCCCCccchhhHHHHHHHHH
Q psy496 61 KCL-TLSPILSPSIIYTSTGCGKTTQVPQFILDDEIA 96 (319)
Q Consensus 61 ~~l-~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~ 96 (319)
+++ +-.+.++.++|.|++|||||+.....+.+.+..
T Consensus 22 ~~l~GG~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~ 58 (509)
T PRK09302 22 DITHGGLPKGRPTLVSGTAGTGKTLFALQFLVNGIKR 58 (509)
T ss_pred HhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 444 346788999999999999998887776666544
No 494
>PRK08233 hypothetical protein; Provisional
Probab=86.07 E-value=0.36 Score=40.45 Aligned_cols=18 Identities=33% Similarity=0.285 Sum_probs=14.8
Q ss_pred CcEEEecCCCCCccchhh
Q psy496 70 SPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~ 87 (319)
..+.|.|++|||||+...
T Consensus 4 ~iI~I~G~~GsGKtTla~ 21 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTE 21 (182)
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 457889999999998763
No 495
>KOG0745|consensus
Probab=86.07 E-value=0.4 Score=46.05 Aligned_cols=17 Identities=35% Similarity=0.470 Sum_probs=14.7
Q ss_pred CcEEEecCCCCCccchh
Q psy496 70 SPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~ 86 (319)
.|+|+.||||||||+..
T Consensus 227 SNvLllGPtGsGKTlla 243 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLA 243 (564)
T ss_pred ccEEEECCCCCchhHHH
Confidence 57999999999999543
No 496
>PRK14530 adenylate kinase; Provisional
Probab=86.04 E-value=0.37 Score=41.97 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=16.0
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
.+++|.|++|||||+..-.
T Consensus 4 ~~I~i~G~pGsGKsT~~~~ 22 (215)
T PRK14530 4 PRILLLGAPGAGKGTQSSN 22 (215)
T ss_pred CEEEEECCCCCCHHHHHHH
Confidence 4689999999999987644
No 497
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=86.02 E-value=3.2 Score=40.08 Aligned_cols=54 Identities=13% Similarity=0.263 Sum_probs=34.0
Q ss_pred ccEEEEecccccccchhHHHHHHHhhhc---cccCceEEEecccc-ChhhHhhhhCCC
Q psy496 175 VSHIVMDEIHERSMISDFLLAILKDVTD---KRKDLKLILMSATL-NAEKFSQFFGGA 228 (319)
Q Consensus 175 v~~vViDEah~~~~~~~~~~~~l~~~~~---~~~~~qiv~lSAT~-~~~~l~~~l~~~ 228 (319)
.-+||||.+..+....+++...+..-.. ...-..+|++|... ..+.+.+.+.+.
T Consensus 149 ~PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~ 206 (431)
T PF10443_consen 149 RPVVVIDNFLHKAEENDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNR 206 (431)
T ss_pred CCEEEEcchhccCcccchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCC
Confidence 4689999998754443444433333221 22345789998888 777888888654
No 498
>PRK06762 hypothetical protein; Provisional
Probab=86.01 E-value=0.36 Score=40.00 Aligned_cols=17 Identities=41% Similarity=0.442 Sum_probs=14.5
Q ss_pred cEEEecCCCCCccchhh
Q psy496 71 PSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~ 87 (319)
.++++|++|||||+..-
T Consensus 4 li~i~G~~GsGKST~A~ 20 (166)
T PRK06762 4 LIIIRGNSGSGKTTIAK 20 (166)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998763
No 499
>KOG0726|consensus
Probab=85.96 E-value=0.86 Score=41.73 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=14.5
Q ss_pred CCcEEEecCCCCCccch
Q psy496 69 LSPSIIYTSTGCGKTTQ 85 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~ 85 (319)
.+-|+++|++|+|||+.
T Consensus 219 PKGVIlyG~PGTGKTLL 235 (440)
T KOG0726|consen 219 PKGVILYGEPGTGKTLL 235 (440)
T ss_pred CCeeEEeCCCCCchhHH
Confidence 36699999999999954
No 500
>PHA00012 I assembly protein
Probab=85.91 E-value=2.5 Score=39.49 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=18.3
Q ss_pred EEEecCCCCCccchhhHHHHHHHH
Q psy496 72 SIIYTSTGCGKTTQVPQFILDDEI 95 (319)
Q Consensus 72 vli~apTGSGKT~~~~l~il~~l~ 95 (319)
-+|+|-.|||||.....-+...+.
T Consensus 4 ylITGkPGSGKSl~aV~~I~~~L~ 27 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQDKLV 27 (361)
T ss_pred EEEecCCCCCchHHHHHHHHHHHH
Confidence 578999999999877665555443
Done!