Query psy496
Match_columns 319
No_of_seqs 247 out of 2527
Neff 8.3
Searched_HMMs 29240
Date Fri Aug 16 22:17:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy496.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/496hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3llm_A ATP-dependent RNA helic 100.0 4.6E-29 1.6E-33 220.7 14.2 174 45-233 62-235 (235)
2 2xau_A PRE-mRNA-splicing facto 99.9 1.6E-27 5.4E-32 243.6 15.8 226 45-291 94-319 (773)
3 4f92_B U5 small nuclear ribonu 99.9 3.4E-26 1.2E-30 249.3 21.2 252 31-299 66-342 (1724)
4 4f92_B U5 small nuclear ribonu 99.9 5.6E-27 1.9E-31 255.4 12.2 241 32-291 913-1171(1724)
5 2p6r_A Afuhel308 helicase; pro 99.9 2.7E-26 9.1E-31 233.0 13.9 220 44-291 25-258 (702)
6 3fmo_B ATP-dependent RNA helic 99.9 3.8E-26 1.3E-30 209.3 12.8 188 26-229 99-292 (300)
7 2va8_A SSO2462, SKI2-type heli 99.9 2.5E-26 8.5E-31 233.6 12.2 176 44-244 30-213 (715)
8 2db3_A ATP-dependent RNA helic 99.9 2.7E-26 9.1E-31 220.6 11.7 254 6-288 31-313 (434)
9 3fht_A ATP-dependent RNA helic 99.9 1.4E-24 4.7E-29 205.4 14.3 239 25-288 31-279 (412)
10 2zj8_A DNA helicase, putative 99.9 5.2E-25 1.8E-29 224.1 11.5 234 25-291 7-253 (720)
11 3fmp_B ATP-dependent RNA helic 99.9 7.7E-25 2.6E-29 212.5 12.0 225 45-291 115-349 (479)
12 3iuy_A Probable ATP-dependent 99.9 5.9E-25 2E-29 192.8 9.3 169 45-229 43-223 (228)
13 3l9o_A ATP-dependent RNA helic 99.9 3.4E-24 1.2E-28 226.2 15.7 177 43-245 183-366 (1108)
14 3fe2_A Probable ATP-dependent 99.9 1.4E-24 4.6E-29 192.5 10.6 174 45-233 52-237 (242)
15 3pey_A ATP-dependent RNA helic 99.9 4.4E-24 1.5E-28 200.4 14.4 238 25-288 11-256 (395)
16 2i4i_A ATP-dependent RNA helic 99.9 3.4E-24 1.2E-28 203.3 13.7 235 26-288 22-289 (417)
17 1qde_A EIF4A, translation init 99.9 2.4E-24 8.2E-29 188.2 11.2 192 25-236 20-219 (224)
18 2pl3_A Probable ATP-dependent 99.9 2.5E-24 8.7E-29 189.8 10.6 175 45-234 48-233 (236)
19 3dkp_A Probable ATP-dependent 99.9 3.1E-24 1.1E-28 190.3 11.2 177 45-236 52-243 (245)
20 1vec_A ATP-dependent RNA helic 99.9 8.6E-24 3E-28 182.2 13.4 183 25-226 9-200 (206)
21 1q0u_A Bstdead; DEAD protein, 99.9 4.7E-24 1.6E-28 186.0 11.7 190 25-230 10-207 (219)
22 3ber_A Probable ATP-dependent 99.9 9.3E-24 3.2E-28 188.3 13.4 168 45-229 66-242 (249)
23 3eiq_A Eukaryotic initiation f 99.9 1.1E-23 3.7E-28 199.5 11.8 218 45-288 63-293 (414)
24 2xgj_A ATP-dependent RNA helic 99.9 3.8E-23 1.3E-27 216.4 16.9 177 42-245 84-268 (1010)
25 3bor_A Human initiation factor 99.9 8.9E-24 3E-28 186.8 10.3 166 45-227 53-228 (237)
26 3fho_A ATP-dependent RNA helic 99.9 2.9E-23 1E-27 203.2 14.9 225 45-291 142-373 (508)
27 2oxc_A Probable ATP-dependent 99.9 8.5E-24 2.9E-28 186.0 9.7 168 45-228 47-223 (230)
28 3ly5_A ATP-dependent RNA helic 99.9 9E-24 3.1E-28 189.8 9.0 170 45-229 77-258 (262)
29 1wrb_A DJVLGB; RNA helicase, D 99.9 2.5E-23 8.6E-28 185.3 11.6 173 45-233 46-239 (253)
30 2j0s_A ATP-dependent RNA helic 99.9 2.7E-23 9.2E-28 197.1 12.3 218 45-288 60-289 (410)
31 2jlq_A Serine protease subunit 99.9 1.9E-23 6.3E-28 201.8 11.3 197 45-288 5-201 (451)
32 1hv8_A Putative ATP-dependent 99.9 1.7E-23 5.7E-28 194.6 10.2 232 25-288 12-251 (367)
33 1t6n_A Probable ATP-dependent 99.9 5.3E-23 1.8E-27 179.3 12.3 168 45-227 37-214 (220)
34 2gxq_A Heat resistant RNA depe 99.9 3.8E-23 1.3E-27 178.1 11.0 168 45-229 24-200 (207)
35 3i5x_A ATP-dependent RNA helic 99.9 5.1E-23 1.7E-27 203.5 12.5 176 45-228 95-288 (563)
36 1s2m_A Putative ATP-dependent 99.9 4.1E-22 1.4E-26 188.2 16.0 232 26-288 28-271 (400)
37 1xti_A Probable ATP-dependent 99.9 1.6E-22 5.6E-27 190.0 13.0 220 45-289 31-264 (391)
38 4a4z_A Antiviral helicase SKI2 99.9 1.1E-22 3.9E-27 212.7 12.3 178 43-244 38-222 (997)
39 1fuu_A Yeast initiation factor 99.9 2.6E-23 8.9E-28 195.5 6.0 238 25-291 27-275 (394)
40 3sqw_A ATP-dependent RNA helic 99.9 3.4E-22 1.2E-26 198.6 12.8 176 45-228 44-237 (579)
41 2z0m_A 337AA long hypothetical 99.9 2.5E-22 8.6E-27 184.6 8.8 210 45-289 17-234 (337)
42 3oiy_A Reverse gyrase helicase 99.8 3.3E-22 1.1E-26 190.3 5.5 121 44-185 21-150 (414)
43 2z83_A Helicase/nucleoside tri 99.8 9E-21 3.1E-25 183.4 13.4 137 66-217 18-154 (459)
44 3o8b_A HCV NS3 protease/helica 99.8 2.2E-21 7.6E-26 193.5 6.6 134 65-217 228-361 (666)
45 4ddu_A Reverse gyrase; topoiso 99.8 4.6E-21 1.6E-25 202.2 8.5 121 44-185 78-207 (1104)
46 2whx_A Serine protease/ntpase/ 99.8 1E-20 3.6E-25 188.9 10.4 149 44-217 171-319 (618)
47 4a2p_A RIG-I, retinoic acid in 99.8 3.9E-20 1.3E-24 181.5 12.0 158 43-216 6-176 (556)
48 2v1x_A ATP-dependent DNA helic 99.8 3.4E-20 1.2E-24 184.4 11.0 157 45-229 45-226 (591)
49 2v6i_A RNA helicase; membrane, 99.8 7.5E-20 2.6E-24 175.5 12.7 135 68-217 1-135 (431)
50 3tbk_A RIG-I helicase domain; 99.8 1.2E-19 4E-24 177.8 13.4 159 43-216 3-174 (555)
51 2wv9_A Flavivirin protease NS2 99.8 9.7E-20 3.3E-24 183.3 12.1 155 44-217 215-374 (673)
52 1gm5_A RECG; helicase, replica 99.8 5E-19 1.7E-23 180.4 16.6 211 44-288 368-591 (780)
53 1yks_A Genome polyprotein [con 99.8 1.1E-18 3.7E-23 167.9 14.2 136 67-217 6-141 (440)
54 2ykg_A Probable ATP-dependent 99.8 1.1E-18 3.7E-23 176.5 14.6 159 45-217 14-184 (696)
55 1oyw_A RECQ helicase, ATP-depe 99.8 1.6E-19 5.5E-24 177.3 7.9 207 45-288 26-249 (523)
56 3b6e_A Interferon-induced heli 99.8 7.7E-20 2.6E-24 157.9 4.4 157 42-215 31-216 (216)
57 4a2q_A RIG-I, retinoic acid in 99.8 1.6E-18 5.6E-23 178.1 12.7 158 44-216 248-417 (797)
58 2eyq_A TRCF, transcription-rep 99.8 1.1E-17 3.7E-22 177.5 19.1 211 43-288 602-825 (1151)
59 1gku_B Reverse gyrase, TOP-RG; 99.8 1.2E-19 4.1E-24 191.1 3.5 148 47-216 59-225 (1054)
60 1rif_A DAR protein, DNA helica 99.7 6.3E-18 2.1E-22 152.9 11.0 147 44-216 113-262 (282)
61 1wp9_A ATP-dependent RNA helic 99.7 3.1E-18 1E-22 163.9 6.8 159 45-223 10-175 (494)
62 4a2w_A RIG-I, retinoic acid in 99.7 7.9E-18 2.7E-22 175.6 9.5 159 43-216 247-417 (936)
63 2oca_A DAR protein, ATP-depend 99.7 3.8E-17 1.3E-21 159.4 11.2 148 43-216 112-262 (510)
64 4gl2_A Interferon-induced heli 99.7 2.6E-18 9E-23 173.8 2.6 163 43-216 6-191 (699)
65 3h1t_A Type I site-specific re 99.6 7.2E-16 2.4E-20 153.2 10.9 163 44-227 178-355 (590)
66 1tf5_A Preprotein translocase 99.6 4.8E-17 1.7E-21 164.4 1.9 121 44-185 83-214 (844)
67 2fwr_A DNA repair protein RAD2 99.6 6E-16 2.1E-20 149.5 6.2 136 44-216 93-228 (472)
68 2fsf_A Preprotein translocase 99.6 1E-16 3.5E-21 161.7 0.3 121 44-185 74-205 (853)
69 1nkt_A Preprotein translocase 99.6 2.6E-16 8.9E-21 159.2 3.3 121 44-185 111-242 (922)
70 2fz4_A DNA repair protein RAD2 99.6 1.4E-15 4.6E-20 134.4 6.9 136 44-216 93-228 (237)
71 3rc3_A ATP-dependent RNA helic 99.5 5.8E-14 2E-18 141.1 12.5 141 66-231 152-297 (677)
72 2ipc_A Preprotein translocase 99.4 1.5E-14 5.3E-19 146.1 1.2 123 42-185 77-213 (997)
73 2w00_A HSDR, R.ECOR124I; ATP-b 99.4 1.4E-13 5E-18 143.9 8.1 172 44-227 271-456 (1038)
74 1z63_A Helicase of the SNF2/RA 99.2 1.7E-11 5.7E-16 119.1 9.7 150 45-216 38-187 (500)
75 3crv_A XPD/RAD3 related DNA he 99.1 4.9E-11 1.7E-15 117.6 7.5 65 47-125 6-70 (551)
76 3dmq_A RNA polymerase-associat 99.1 2E-11 6.9E-16 127.7 4.4 160 43-216 152-316 (968)
77 2vl7_A XPD; helicase, unknown 99.1 1.1E-10 3.6E-15 114.9 6.8 66 45-124 8-73 (540)
78 3mwy_W Chromo domain-containin 98.8 1.1E-08 3.8E-13 105.0 11.4 136 66-216 252-405 (800)
79 1z3i_X Similar to RAD54-like; 98.7 8.9E-08 3.1E-12 96.0 12.7 158 45-216 56-230 (644)
80 1w36_D RECD, exodeoxyribonucle 98.6 7.2E-08 2.5E-12 96.0 7.0 143 47-215 152-298 (608)
81 3jux_A Protein translocase sub 98.2 6.4E-07 2.2E-11 89.5 3.9 61 73-142 92-152 (822)
82 4a15_A XPD helicase, ATP-depen 98.1 1.7E-06 5.9E-11 86.2 5.5 54 68-125 21-74 (620)
83 3e1s_A Exodeoxyribonuclease V, 97.8 5.8E-05 2E-09 74.5 9.0 60 58-122 193-252 (574)
84 3upu_A ATP-dependent DNA helic 97.8 5.1E-05 1.7E-09 72.8 8.2 68 46-122 27-94 (459)
85 2b8t_A Thymidine kinase; deoxy 97.4 0.00054 1.8E-08 59.3 9.1 112 68-212 11-122 (223)
86 3kl4_A SRP54, signal recogniti 97.2 0.0024 8.1E-08 60.6 11.6 134 69-225 97-234 (433)
87 2orw_A Thymidine kinase; TMTK, 97.0 0.0017 6E-08 54.2 7.6 38 69-111 3-40 (184)
88 1xx6_A Thymidine kinase; NESG, 97.0 0.0027 9.3E-08 53.4 8.4 39 68-111 7-45 (191)
89 4b3f_X DNA-binding protein smu 97.0 0.00044 1.5E-08 69.1 4.0 51 70-125 206-256 (646)
90 3te6_A Regulatory protein SIR3 96.8 0.0057 2E-07 55.6 9.9 127 66-216 42-173 (318)
91 3vkw_A Replicase large subunit 96.8 0.0018 6.2E-08 61.5 6.7 99 66-198 158-256 (446)
92 2px0_A Flagellar biosynthesis 96.8 0.0058 2E-07 55.0 9.6 130 67-224 103-232 (296)
93 3ec2_A DNA replication protein 96.8 0.0061 2.1E-07 50.1 9.0 21 68-88 37-57 (180)
94 1njg_A DNA polymerase III subu 96.7 0.014 4.7E-07 49.2 11.0 41 172-214 124-164 (250)
95 2chg_A Replication factor C sm 96.6 0.025 8.5E-07 47.0 11.6 19 69-87 38-56 (226)
96 3dm5_A SRP54, signal recogniti 96.6 0.0074 2.5E-07 57.3 9.0 55 69-126 100-154 (443)
97 3u61_B DNA polymerase accessor 96.5 0.014 4.6E-07 52.7 10.0 51 34-87 16-66 (324)
98 2j9r_A Thymidine kinase; TK1, 96.4 0.0065 2.2E-07 52.0 7.1 41 67-112 26-66 (214)
99 1jr3_A DNA polymerase III subu 96.4 0.0093 3.2E-07 54.6 8.8 50 162-213 107-156 (373)
100 1a5t_A Delta prime, HOLB; zinc 96.4 0.031 1.1E-06 50.9 12.1 51 162-214 96-146 (334)
101 1fnn_A CDC6P, cell division co 96.2 0.02 6.7E-07 52.6 9.7 18 71-88 46-63 (389)
102 3bos_A Putative DNA replicatio 96.2 0.0063 2.2E-07 51.8 5.8 21 67-87 50-70 (242)
103 2kjq_A DNAA-related protein; s 96.2 0.0028 9.6E-08 51.0 3.1 20 68-87 35-54 (149)
104 3syl_A Protein CBBX; photosynt 96.1 0.016 5.4E-07 51.7 8.4 21 67-87 65-85 (309)
105 2v1u_A Cell division control p 96.1 0.037 1.3E-06 50.5 11.1 22 67-88 42-63 (387)
106 1sxj_D Activator 1 41 kDa subu 96.1 0.024 8.2E-07 51.4 9.4 50 34-87 27-76 (353)
107 3lfu_A DNA helicase II; SF1 he 96.1 0.0098 3.4E-07 58.9 7.2 59 69-128 22-80 (647)
108 1l8q_A Chromosomal replication 96.0 0.0083 2.8E-07 54.2 6.0 20 68-87 36-55 (324)
109 1iqp_A RFCS; clamp loader, ext 96.0 0.046 1.6E-06 48.8 10.7 39 173-213 109-147 (327)
110 2o0j_A Terminase, DNA packagin 96.0 0.11 3.7E-06 48.4 13.3 55 70-127 179-233 (385)
111 1sxj_E Activator 1 40 kDa subu 95.9 0.025 8.4E-07 51.5 8.6 43 172-216 132-174 (354)
112 3cpe_A Terminase, DNA packagin 95.9 0.13 4.6E-06 50.5 14.4 57 69-128 178-234 (592)
113 2gk6_A Regulator of nonsense t 95.9 0.0062 2.1E-07 60.5 4.8 52 69-124 195-246 (624)
114 2xzl_A ATP-dependent helicase 95.9 0.01 3.6E-07 60.7 6.5 62 60-125 366-427 (802)
115 2qby_B CDC6 homolog 3, cell di 95.8 0.046 1.6E-06 50.1 10.2 27 67-94 43-69 (384)
116 3e2i_A Thymidine kinase; Zn-bi 95.8 0.019 6.5E-07 49.1 6.7 49 59-112 18-66 (219)
117 1w4r_A Thymidine kinase; type 95.8 0.011 3.8E-07 49.8 5.1 39 68-111 19-57 (195)
118 2gno_A DNA polymerase III, gam 95.6 0.052 1.8E-06 48.9 9.5 50 162-213 70-119 (305)
119 2d7d_A Uvrabc system protein B 95.5 0.017 6E-07 57.7 6.3 69 45-126 13-81 (661)
120 2orv_A Thymidine kinase; TP4A 95.5 0.048 1.7E-06 47.1 8.2 40 68-112 18-57 (234)
121 3u4q_A ATP-dependent helicase/ 95.3 0.019 6.5E-07 61.5 6.2 59 69-127 23-82 (1232)
122 2wjy_A Regulator of nonsense t 95.3 0.014 4.7E-07 59.8 4.7 53 68-124 370-422 (800)
123 1ls1_A Signal recognition part 95.1 0.077 2.6E-06 47.5 8.8 46 68-116 97-142 (295)
124 1sxj_B Activator 1 37 kDa subu 95.1 0.11 3.9E-06 46.1 10.0 38 174-213 107-144 (323)
125 1uaa_A REP helicase, protein ( 95.1 0.024 8.2E-07 56.7 6.0 58 69-127 15-72 (673)
126 1c4o_A DNA nucleotide excision 95.0 0.02 6.7E-07 57.4 5.1 75 40-127 4-78 (664)
127 2z4s_A Chromosomal replication 95.0 0.2 6.9E-06 47.4 11.7 26 69-95 130-155 (440)
128 1ojl_A Transcriptional regulat 94.9 0.082 2.8E-06 47.4 8.4 21 66-86 22-42 (304)
129 1vma_A Cell division protein F 94.8 0.13 4.3E-06 46.4 9.3 54 68-124 103-156 (306)
130 1pjr_A PCRA; DNA repair, DNA r 94.8 0.034 1.1E-06 56.2 6.1 58 69-127 24-81 (724)
131 2v3c_C SRP54, signal recogniti 94.8 0.14 4.8E-06 48.4 10.0 21 70-90 100-120 (432)
132 1sxj_C Activator 1 40 kDa subu 94.8 0.11 3.8E-06 47.0 9.0 39 173-213 109-147 (340)
133 2chq_A Replication factor C sm 94.7 0.065 2.2E-06 47.6 7.3 17 71-87 40-56 (319)
134 1c4o_A DNA nucleotide excision 94.7 0.05 1.7E-06 54.4 6.9 15 275-289 439-453 (664)
135 3pxi_A Negative regulator of g 94.4 0.19 6.6E-06 50.8 10.6 16 71-86 523-538 (758)
136 3e70_C DPA, signal recognition 94.0 0.15 5.1E-06 46.4 7.9 57 67-126 127-183 (328)
137 1qvr_A CLPB protein; coiled co 93.5 0.15 5.2E-06 52.4 7.8 17 70-86 589-605 (854)
138 2zpa_A Uncharacterized protein 93.4 0.065 2.2E-06 53.4 4.7 96 70-216 193-288 (671)
139 3n70_A Transport activator; si 93.3 0.037 1.3E-06 43.7 2.4 21 66-86 21-41 (145)
140 2ffh_A Protein (FFH); SRP54, s 93.2 0.35 1.2E-05 45.6 9.2 54 68-124 97-150 (425)
141 1j8m_F SRP54, signal recogniti 92.7 0.45 1.5E-05 42.5 8.9 53 69-124 98-150 (297)
142 1e9r_A Conjugal transfer prote 92.6 0.076 2.6E-06 50.0 3.8 42 68-114 52-93 (437)
143 2xxa_A Signal recognition part 92.5 0.37 1.3E-05 45.5 8.4 55 69-125 100-154 (433)
144 2eyu_A Twitching motility prot 92.3 0.068 2.3E-06 47.0 2.9 23 66-88 22-44 (261)
145 3co5_A Putative two-component 92.2 0.047 1.6E-06 43.1 1.5 20 67-86 25-44 (143)
146 1kgd_A CASK, peripheral plasma 91.8 0.053 1.8E-06 44.5 1.5 21 68-88 4-24 (180)
147 2w58_A DNAI, primosome compone 91.1 0.13 4.3E-06 42.7 3.1 24 70-94 55-78 (202)
148 2zts_A Putative uncharacterize 91.1 0.18 6.1E-06 42.9 4.1 31 66-96 27-57 (251)
149 2yhs_A FTSY, cell division pro 91.0 0.73 2.5E-05 44.2 8.6 22 67-88 291-312 (503)
150 2oap_1 GSPE-2, type II secreti 90.9 0.06 2E-06 52.1 1.0 23 64-86 255-277 (511)
151 2dr3_A UPF0273 protein PH0284; 90.8 0.14 4.9E-06 43.5 3.3 28 66-93 20-47 (247)
152 2w0m_A SSO2452; RECA, SSPF, un 90.6 0.19 6.5E-06 42.1 3.8 30 61-90 14-44 (235)
153 3pfi_A Holliday junction ATP-d 90.5 0.18 6.3E-06 45.3 3.8 20 67-86 53-72 (338)
154 1jbk_A CLPB protein; beta barr 90.4 0.086 2.9E-06 42.5 1.4 21 67-87 41-61 (195)
155 3tr0_A Guanylate kinase, GMP k 90.4 0.087 3E-06 43.7 1.5 22 67-88 5-26 (205)
156 3tau_A Guanylate kinase, GMP k 90.3 0.11 3.8E-06 43.6 2.0 22 67-88 6-27 (208)
157 4gp7_A Metallophosphoesterase; 90.2 0.082 2.8E-06 43.0 1.1 22 67-88 7-28 (171)
158 1zp6_A Hypothetical protein AT 90.2 0.087 3E-06 43.2 1.3 22 66-87 6-27 (191)
159 3vaa_A Shikimate kinase, SK; s 90.1 0.095 3.2E-06 43.6 1.5 24 65-88 21-44 (199)
160 1lvg_A Guanylate kinase, GMP k 90.1 0.094 3.2E-06 43.8 1.4 21 68-88 3-23 (198)
161 2gza_A Type IV secretion syste 90.0 0.094 3.2E-06 48.3 1.5 27 61-87 167-193 (361)
162 2j37_W Signal recognition part 89.9 1.1 3.6E-05 43.2 8.8 51 70-123 102-152 (504)
163 3a00_A Guanylate kinase, GMP k 89.8 0.1 3.6E-06 42.9 1.5 20 69-88 1-20 (186)
164 1z6g_A Guanylate kinase; struc 89.5 0.12 4.2E-06 43.8 1.7 28 61-88 15-42 (218)
165 1qhx_A CPT, protein (chloramph 89.4 0.11 3.9E-06 41.9 1.3 18 70-87 4-21 (178)
166 3lw7_A Adenylate kinase relate 89.4 0.1 3.5E-06 41.6 1.1 18 71-88 3-20 (179)
167 2j41_A Guanylate kinase; GMP, 89.3 0.12 4.2E-06 42.8 1.5 22 67-88 4-25 (207)
168 2p65_A Hypothetical protein PF 89.2 0.086 2.9E-06 42.5 0.5 21 67-87 41-61 (187)
169 3jvv_A Twitching mobility prot 89.2 0.13 4.4E-06 47.4 1.7 21 67-87 121-141 (356)
170 2ewv_A Twitching motility prot 89.1 0.13 4.4E-06 47.6 1.7 23 66-88 133-155 (372)
171 3lnc_A Guanylate kinase, GMP k 89.1 0.15 5.1E-06 43.4 1.9 23 66-88 24-46 (231)
172 1kag_A SKI, shikimate kinase I 89.1 0.13 4.5E-06 41.3 1.5 19 69-87 4-22 (173)
173 2bjv_A PSP operon transcriptio 88.9 0.18 6.1E-06 43.8 2.3 21 66-86 26-46 (265)
174 4ag6_A VIRB4 ATPase, type IV s 88.9 0.18 6.1E-06 46.7 2.5 24 68-91 34-57 (392)
175 3trf_A Shikimate kinase, SK; a 88.8 0.13 4.5E-06 41.9 1.4 20 69-88 5-24 (185)
176 3c8u_A Fructokinase; YP_612366 88.8 0.16 5.3E-06 42.6 1.8 21 66-86 19-39 (208)
177 2qor_A Guanylate kinase; phosp 88.7 0.15 5E-06 42.6 1.6 22 67-88 10-31 (204)
178 1zu4_A FTSY; GTPase, signal re 88.7 1.2 4.2E-05 40.0 7.9 23 67-89 103-125 (320)
179 2pt7_A CAG-ALFA; ATPase, prote 88.5 0.14 4.7E-06 46.6 1.4 22 65-86 167-188 (330)
180 3a8t_A Adenylate isopentenyltr 88.4 0.16 5.6E-06 46.3 1.8 19 69-87 40-58 (339)
181 1ex7_A Guanylate kinase; subst 88.4 0.15 5.3E-06 42.4 1.5 17 70-86 2-18 (186)
182 2v9p_A Replication protein E1; 88.3 0.24 8.3E-06 44.5 2.8 29 60-88 117-145 (305)
183 1p9r_A General secretion pathw 88.3 0.16 5.5E-06 47.8 1.7 22 66-87 164-185 (418)
184 2qmh_A HPR kinase/phosphorylas 88.3 0.2 6.9E-06 42.3 2.1 19 68-86 33-51 (205)
185 3bh0_A DNAB-like replicative h 88.3 0.38 1.3E-05 43.2 4.2 34 60-93 59-92 (315)
186 3ney_A 55 kDa erythrocyte memb 88.3 0.19 6.5E-06 42.2 2.0 21 68-88 18-38 (197)
187 3uk6_A RUVB-like 2; hexameric 88.2 0.23 7.9E-06 45.1 2.7 39 49-87 49-88 (368)
188 3iij_A Coilin-interacting nucl 88.1 0.18 6E-06 41.0 1.7 21 68-88 10-30 (180)
189 4eun_A Thermoresistant glucoki 88.1 0.16 5.6E-06 42.2 1.5 22 67-88 27-48 (200)
190 3exa_A TRNA delta(2)-isopenten 88.1 0.14 4.9E-06 46.3 1.2 18 70-87 4-21 (322)
191 1znw_A Guanylate kinase, GMP k 88.0 0.17 5.7E-06 42.4 1.5 23 65-87 16-38 (207)
192 1s96_A Guanylate kinase, GMP k 88.0 0.17 5.6E-06 43.2 1.5 23 66-88 13-35 (219)
193 1zuh_A Shikimate kinase; alpha 87.9 0.16 5.3E-06 40.8 1.2 19 70-88 8-26 (168)
194 2ehv_A Hypothetical protein PH 87.9 0.38 1.3E-05 40.9 3.8 27 65-91 26-52 (251)
195 2ze6_A Isopentenyl transferase 87.9 0.15 5.2E-06 44.3 1.2 18 71-88 3-20 (253)
196 2cvh_A DNA repair and recombin 87.8 0.27 9.3E-06 40.9 2.8 31 61-91 11-42 (220)
197 1knq_A Gluconate kinase; ALFA/ 87.8 0.16 5.4E-06 41.0 1.2 21 68-88 7-27 (175)
198 2qt1_A Nicotinamide riboside k 87.8 0.15 5E-06 42.6 1.0 26 62-87 14-39 (207)
199 2qgz_A Helicase loader, putati 87.7 0.32 1.1E-05 43.6 3.3 26 69-95 152-177 (308)
200 1ly1_A Polynucleotide kinase; 87.6 0.17 5.7E-06 40.8 1.2 17 71-87 4-20 (181)
201 3kb2_A SPBC2 prophage-derived 87.5 0.16 5.5E-06 40.6 1.1 18 71-88 3-20 (173)
202 1kht_A Adenylate kinase; phosp 87.4 0.18 6.2E-06 41.0 1.3 20 69-88 3-22 (192)
203 2d7d_A Uvrabc system protein B 87.3 0.98 3.4E-05 45.0 6.9 14 275-288 445-458 (661)
204 1y63_A LMAJ004144AAA protein; 87.3 0.19 6.7E-06 41.1 1.5 20 68-87 9-28 (184)
205 2qz4_A Paraplegin; AAA+, SPG7, 87.1 0.19 6.4E-06 43.3 1.3 20 68-87 38-57 (262)
206 3b9p_A CG5977-PA, isoform A; A 87.1 0.2 6.7E-06 44.2 1.4 19 68-86 53-71 (297)
207 3h4m_A Proteasome-activating n 86.9 0.21 7E-06 43.8 1.5 20 67-86 49-68 (285)
208 3uie_A Adenylyl-sulfate kinase 86.9 0.19 6.6E-06 41.7 1.2 23 66-88 22-44 (200)
209 3foz_A TRNA delta(2)-isopenten 86.9 0.19 6.3E-06 45.4 1.2 18 70-87 11-28 (316)
210 1cr0_A DNA primase/helicase; R 86.8 0.34 1.2E-05 42.8 2.9 31 60-90 26-56 (296)
211 1tue_A Replication protein E1; 86.6 0.37 1.3E-05 40.8 2.8 28 59-86 48-75 (212)
212 2bdt_A BH3686; alpha-beta prot 86.6 0.17 5.8E-06 41.5 0.7 19 70-88 3-21 (189)
213 3asz_A Uridine kinase; cytidin 86.5 0.2 6.7E-06 41.8 1.1 20 68-87 5-24 (211)
214 1ofh_A ATP-dependent HSL prote 86.5 0.24 8.1E-06 43.7 1.7 20 68-87 49-68 (310)
215 3b85_A Phosphate starvation-in 86.4 0.18 6E-06 42.7 0.7 23 66-88 19-41 (208)
216 3cf0_A Transitional endoplasmi 86.4 0.22 7.7E-06 44.3 1.5 20 67-86 47-66 (301)
217 1in4_A RUVB, holliday junction 86.4 0.46 1.6E-05 43.0 3.6 19 70-88 52-70 (334)
218 1d2n_A N-ethylmaleimide-sensit 86.4 0.2 6.9E-06 43.7 1.1 21 67-87 62-82 (272)
219 3cm0_A Adenylate kinase; ATP-b 86.3 0.19 6.4E-06 40.9 0.8 20 69-88 4-23 (186)
220 4a74_A DNA repair and recombin 86.1 0.24 8.2E-06 41.6 1.4 26 65-90 21-46 (231)
221 1lv7_A FTSH; alpha/beta domain 86.0 0.23 7.9E-06 42.9 1.3 19 69-87 45-63 (257)
222 1w36_B RECB, exodeoxyribonucle 86.0 1.2 3.9E-05 47.6 6.9 62 66-127 13-81 (1180)
223 3hws_A ATP-dependent CLP prote 85.9 0.26 8.9E-06 45.0 1.7 19 68-86 50-68 (363)
224 3t61_A Gluconokinase; PSI-biol 85.8 0.24 8.2E-06 41.0 1.3 19 70-88 19-37 (202)
225 2rhm_A Putative kinase; P-loop 85.5 0.24 8.2E-06 40.4 1.1 20 69-88 5-24 (193)
226 3tif_A Uncharacterized ABC tra 85.5 0.27 9.3E-06 42.3 1.5 23 64-86 26-48 (235)
227 3pvs_A Replication-associated 85.4 0.41 1.4E-05 45.4 2.8 18 70-87 51-68 (447)
228 3crm_A TRNA delta(2)-isopenten 85.1 0.25 8.4E-06 44.8 1.1 18 70-87 6-23 (323)
229 1gvn_B Zeta; postsegregational 85.1 0.29 1E-05 43.4 1.5 20 69-88 33-52 (287)
230 1cke_A CK, MSSA, protein (cyti 85.0 0.28 9.6E-06 41.2 1.4 19 70-88 6-24 (227)
231 3d3q_A TRNA delta(2)-isopenten 85.0 0.26 9E-06 45.0 1.2 18 70-87 8-25 (340)
232 2c95_A Adenylate kinase 1; tra 85.0 0.29 9.9E-06 40.0 1.3 21 68-88 8-28 (196)
233 1sxj_A Activator 1 95 kDa subu 84.9 0.44 1.5E-05 45.9 2.8 19 69-87 77-95 (516)
234 3fb4_A Adenylate kinase; psych 84.9 0.27 9.1E-06 41.1 1.1 18 71-88 2-19 (216)
235 1hqc_A RUVB; extended AAA-ATPa 84.8 0.3 1E-05 43.5 1.5 19 68-86 37-55 (324)
236 1n0w_A DNA repair protein RAD5 84.8 0.36 1.2E-05 40.9 1.9 31 61-91 15-46 (243)
237 3bgw_A DNAB-like replicative h 84.5 0.85 2.9E-05 43.1 4.6 36 60-95 188-223 (444)
238 1tev_A UMP-CMP kinase; ploop, 84.5 0.28 9.5E-06 39.9 1.0 19 70-88 4-22 (196)
239 1zd8_A GTP:AMP phosphotransfer 84.5 0.29 1E-05 41.4 1.2 19 69-87 7-25 (227)
240 2pez_A Bifunctional 3'-phospho 84.4 0.3 1E-05 39.6 1.2 20 68-87 4-23 (179)
241 3dl0_A Adenylate kinase; phosp 84.4 0.29 9.9E-06 41.0 1.1 18 71-88 2-19 (216)
242 3eie_A Vacuolar protein sortin 84.4 0.3 1E-05 43.9 1.3 18 69-86 51-68 (322)
243 3b9q_A Chloroplast SRP recepto 84.1 1.2 4E-05 39.9 5.1 22 67-88 98-119 (302)
244 1ye8_A Protein THEP1, hypothet 84.0 0.31 1.1E-05 40.0 1.1 17 71-87 2-18 (178)
245 2vli_A Antibiotic resistance p 84.0 0.37 1.3E-05 38.9 1.5 19 70-88 6-24 (183)
246 1um8_A ATP-dependent CLP prote 83.9 0.4 1.4E-05 44.0 1.9 20 67-86 70-89 (376)
247 2cbz_A Multidrug resistance-as 83.9 0.35 1.2E-05 41.6 1.5 23 64-86 26-48 (237)
248 1e6c_A Shikimate kinase; phosp 83.9 0.35 1.2E-05 38.7 1.4 19 70-88 3-21 (173)
249 1tf7_A KAIC; homohexamer, hexa 83.8 0.75 2.6E-05 44.4 3.9 37 60-96 29-66 (525)
250 1xwi_A SKD1 protein; VPS4B, AA 83.8 0.33 1.1E-05 43.8 1.3 19 68-86 44-62 (322)
251 1g8p_A Magnesium-chelatase 38 83.7 0.3 1E-05 43.9 1.0 19 68-86 44-62 (350)
252 1via_A Shikimate kinase; struc 83.7 0.36 1.2E-05 39.0 1.4 18 71-88 6-23 (175)
253 1ixz_A ATP-dependent metallopr 83.6 0.33 1.1E-05 41.7 1.2 16 71-86 51-66 (254)
254 3t15_A Ribulose bisphosphate c 83.5 0.31 1.1E-05 43.3 1.0 18 69-86 36-53 (293)
255 2v54_A DTMP kinase, thymidylat 83.5 0.38 1.3E-05 39.6 1.5 20 69-88 4-23 (204)
256 3umf_A Adenylate kinase; rossm 83.5 0.44 1.5E-05 40.5 1.9 23 66-88 26-48 (217)
257 2iyv_A Shikimate kinase, SK; t 83.5 0.39 1.3E-05 39.0 1.5 19 70-88 3-21 (184)
258 2zr9_A Protein RECA, recombina 83.4 0.73 2.5E-05 42.1 3.5 34 60-93 50-85 (349)
259 1nks_A Adenylate kinase; therm 83.4 0.33 1.1E-05 39.4 1.0 18 71-88 3-20 (194)
260 4a1f_A DNAB helicase, replicat 83.3 1 3.4E-05 41.1 4.3 35 60-94 37-71 (338)
261 4fcw_A Chaperone protein CLPB; 83.3 0.32 1.1E-05 43.0 1.0 18 70-87 48-65 (311)
262 1sgw_A Putative ABC transporte 83.3 0.42 1.4E-05 40.6 1.6 22 65-86 31-52 (214)
263 3vfd_A Spastin; ATPase, microt 83.2 0.57 2E-05 43.2 2.7 18 69-86 148-165 (389)
264 2bbw_A Adenylate kinase 4, AK4 83.2 0.39 1.3E-05 41.2 1.5 20 69-88 27-46 (246)
265 2r6a_A DNAB helicase, replicat 83.1 1 3.5E-05 42.6 4.5 35 60-94 194-228 (454)
266 2r62_A Cell division protease 83.1 0.22 7.4E-06 43.3 -0.2 19 69-87 44-62 (268)
267 3gfo_A Cobalt import ATP-bindi 83.1 0.4 1.4E-05 42.4 1.5 23 64-86 29-51 (275)
268 2ius_A DNA translocase FTSK; n 83.0 0.86 3E-05 43.9 4.0 28 67-94 165-192 (512)
269 1zak_A Adenylate kinase; ATP:A 83.0 0.44 1.5E-05 40.1 1.7 20 69-88 5-24 (222)
270 2bwj_A Adenylate kinase 5; pho 83.0 0.37 1.3E-05 39.4 1.2 18 70-87 13-30 (199)
271 2jeo_A Uridine-cytidine kinase 82.9 0.39 1.3E-05 41.2 1.4 24 65-88 21-44 (245)
272 1aky_A Adenylate kinase; ATP:A 82.9 0.41 1.4E-05 40.2 1.5 20 69-88 4-23 (220)
273 3hr8_A Protein RECA; alpha and 82.9 0.51 1.8E-05 43.3 2.2 32 60-91 50-83 (356)
274 1htw_A HI0065; nucleotide-bind 82.9 0.51 1.7E-05 37.9 2.0 22 65-86 29-50 (158)
275 2yvu_A Probable adenylyl-sulfa 82.6 0.39 1.3E-05 39.1 1.2 21 68-88 12-32 (186)
276 2l8b_A Protein TRAI, DNA helic 82.6 0.88 3E-05 37.7 3.3 47 69-119 51-97 (189)
277 2qp9_X Vacuolar protein sortin 82.6 0.42 1.4E-05 43.7 1.5 20 68-87 83-102 (355)
278 1qf9_A UMP/CMP kinase, protein 82.5 0.38 1.3E-05 39.0 1.1 19 70-88 7-25 (194)
279 2i3b_A HCR-ntpase, human cance 82.5 0.54 1.9E-05 39.0 2.0 20 69-88 1-20 (189)
280 2plr_A DTMP kinase, probable t 82.4 0.4 1.4E-05 39.6 1.2 19 70-88 5-23 (213)
281 1rj9_A FTSY, signal recognitio 82.4 0.43 1.5E-05 42.8 1.5 21 68-88 101-121 (304)
282 3d8b_A Fidgetin-like protein 1 82.4 0.43 1.5E-05 43.6 1.5 21 67-87 115-135 (357)
283 1f2t_A RAD50 ABC-ATPase; DNA d 82.4 0.41 1.4E-05 38.0 1.2 17 70-86 24-40 (149)
284 2ff7_A Alpha-hemolysin translo 82.3 0.44 1.5E-05 41.3 1.5 23 64-86 30-52 (247)
285 3qf7_A RAD50; ABC-ATPase, ATPa 82.3 0.39 1.3E-05 44.2 1.2 18 71-88 25-42 (365)
286 3kta_A Chromosome segregation 82.3 0.58 2E-05 37.8 2.1 18 70-87 27-44 (182)
287 2pze_A Cystic fibrosis transme 82.2 0.45 1.5E-05 40.7 1.5 22 65-86 30-51 (229)
288 2pcj_A ABC transporter, lipopr 82.2 0.42 1.5E-05 40.7 1.3 22 65-86 26-47 (224)
289 2pt5_A Shikimate kinase, SK; a 82.2 0.4 1.4E-05 38.2 1.1 18 71-88 2-19 (168)
290 3eph_A TRNA isopentenyltransfe 82.2 0.38 1.3E-05 45.0 1.0 18 71-88 4-21 (409)
291 2c9o_A RUVB-like 1; hexameric 82.1 0.68 2.3E-05 43.8 2.8 20 68-87 62-81 (456)
292 2wwf_A Thymidilate kinase, put 82.0 0.45 1.5E-05 39.4 1.4 21 68-88 9-29 (212)
293 1u94_A RECA protein, recombina 82.0 0.93 3.2E-05 41.6 3.6 28 66-93 60-87 (356)
294 1mv5_A LMRA, multidrug resista 82.0 0.42 1.4E-05 41.3 1.2 23 64-86 23-45 (243)
295 2ghi_A Transport protein; mult 82.0 0.46 1.6E-05 41.5 1.5 23 64-86 41-63 (260)
296 4e22_A Cytidylate kinase; P-lo 81.9 0.46 1.6E-05 41.1 1.5 22 67-88 25-46 (252)
297 1jjv_A Dephospho-COA kinase; P 81.9 0.41 1.4E-05 39.6 1.1 17 71-87 4-20 (206)
298 3aez_A Pantothenate kinase; tr 81.9 0.65 2.2E-05 41.7 2.5 22 66-87 87-108 (312)
299 1ji0_A ABC transporter; ATP bi 81.8 0.47 1.6E-05 40.8 1.5 23 64-86 27-49 (240)
300 1nlf_A Regulatory protein REPA 81.7 0.56 1.9E-05 41.1 1.9 26 66-91 27-52 (279)
301 1g6h_A High-affinity branched- 81.7 0.48 1.6E-05 41.3 1.5 23 64-86 28-50 (257)
302 2if2_A Dephospho-COA kinase; a 81.7 0.41 1.4E-05 39.6 1.0 17 71-87 3-19 (204)
303 4b4t_M 26S protease regulatory 81.6 0.43 1.5E-05 45.0 1.2 19 68-86 214-232 (434)
304 2jaq_A Deoxyguanosine kinase; 81.5 0.43 1.5E-05 39.1 1.1 18 71-88 2-19 (205)
305 2cdn_A Adenylate kinase; phosp 81.5 0.49 1.7E-05 39.0 1.4 19 70-88 21-39 (201)
306 4g1u_C Hemin import ATP-bindin 81.5 0.49 1.7E-05 41.5 1.4 23 64-86 32-54 (266)
307 1ukz_A Uridylate kinase; trans 81.4 0.46 1.6E-05 39.2 1.2 18 70-87 16-33 (203)
308 1nn5_A Similar to deoxythymidy 81.4 0.49 1.7E-05 39.2 1.4 21 68-88 8-28 (215)
309 2og2_A Putative signal recogni 81.4 1.7 5.8E-05 39.9 5.1 22 67-88 155-176 (359)
310 2d2e_A SUFC protein; ABC-ATPas 81.2 0.51 1.8E-05 40.9 1.5 24 64-87 24-47 (250)
311 2ixe_A Antigen peptide transpo 81.2 0.49 1.7E-05 41.6 1.4 25 62-86 38-62 (271)
312 2x8a_A Nuclear valosin-contain 81.2 0.46 1.6E-05 41.8 1.2 16 71-86 46-61 (274)
313 1e4v_A Adenylate kinase; trans 81.2 0.44 1.5E-05 39.9 1.0 18 71-88 2-19 (214)
314 3nwj_A ATSK2; P loop, shikimat 81.1 0.55 1.9E-05 40.9 1.6 20 69-88 48-67 (250)
315 1b0u_A Histidine permease; ABC 81.1 0.52 1.8E-05 41.2 1.5 23 64-86 27-49 (262)
316 1iy2_A ATP-dependent metallopr 81.1 0.47 1.6E-05 41.5 1.2 16 71-86 75-90 (278)
317 4b4t_J 26S protease regulatory 81.0 0.49 1.7E-05 44.2 1.3 20 67-86 180-199 (405)
318 2pbr_A DTMP kinase, thymidylat 81.0 0.48 1.7E-05 38.5 1.2 18 71-88 2-19 (195)
319 2z0h_A DTMP kinase, thymidylat 81.0 0.49 1.7E-05 38.6 1.2 17 72-88 3-19 (197)
320 1rz3_A Hypothetical protein rb 80.9 0.46 1.6E-05 39.4 1.0 21 67-87 20-40 (201)
321 3sr0_A Adenylate kinase; phosp 80.8 0.59 2E-05 39.3 1.7 19 71-89 2-20 (206)
322 2z43_A DNA repair and recombin 80.8 0.68 2.3E-05 41.7 2.2 28 65-92 103-130 (324)
323 2zu0_C Probable ATP-dependent 80.8 0.54 1.8E-05 41.3 1.5 24 64-87 41-64 (267)
324 2q6t_A DNAB replication FORK h 80.7 1.3 4.3E-05 41.8 4.1 35 60-94 191-225 (444)
325 3hu3_A Transitional endoplasmi 80.6 0.88 3E-05 43.6 3.0 21 66-86 235-255 (489)
326 1m7g_A Adenylylsulfate kinase; 80.6 0.5 1.7E-05 39.5 1.2 23 66-88 22-44 (211)
327 1vpl_A ABC transporter, ATP-bi 80.5 0.55 1.9E-05 40.9 1.5 23 64-86 36-58 (256)
328 2qby_A CDC6 homolog 1, cell di 80.5 0.56 1.9E-05 42.4 1.5 23 66-88 42-64 (386)
329 1uf9_A TT1252 protein; P-loop, 80.4 0.49 1.7E-05 38.8 1.0 19 70-88 9-27 (203)
330 2yz2_A Putative ABC transporte 80.4 0.56 1.9E-05 41.1 1.5 23 64-86 28-50 (266)
331 4b4t_L 26S protease subunit RP 80.4 0.5 1.7E-05 44.7 1.2 20 67-86 213-232 (437)
332 2r44_A Uncharacterized protein 80.3 0.37 1.3E-05 43.2 0.3 18 69-86 46-63 (331)
333 3nbx_X ATPase RAVA; AAA+ ATPas 80.2 0.36 1.2E-05 46.5 0.1 19 68-86 40-58 (500)
334 2nq2_C Hypothetical ABC transp 80.2 0.56 1.9E-05 40.8 1.4 22 65-86 27-48 (253)
335 3pxg_A Negative regulator of g 80.2 1 3.5E-05 42.8 3.3 22 67-88 199-220 (468)
336 4b4t_K 26S protease regulatory 80.2 0.51 1.8E-05 44.5 1.2 19 68-86 205-223 (428)
337 2p5t_B PEZT; postsegregational 80.0 0.43 1.5E-05 41.3 0.6 21 68-88 31-51 (253)
338 2olj_A Amino acid ABC transpor 80.0 0.59 2E-05 41.0 1.5 23 64-86 45-67 (263)
339 2qi9_C Vitamin B12 import ATP- 80.0 0.59 2E-05 40.6 1.5 22 65-86 22-43 (249)
340 3tlx_A Adenylate kinase 2; str 79.9 0.53 1.8E-05 40.5 1.1 21 68-88 28-48 (243)
341 3a4m_A L-seryl-tRNA(SEC) kinas 79.9 0.54 1.9E-05 40.8 1.2 19 70-88 5-23 (260)
342 2ihy_A ABC transporter, ATP-bi 79.8 0.6 2E-05 41.3 1.5 23 64-86 42-64 (279)
343 3io5_A Recombination and repai 79.7 0.85 2.9E-05 41.3 2.4 42 66-111 26-67 (333)
344 3auy_A DNA double-strand break 79.7 0.53 1.8E-05 43.3 1.1 19 69-87 25-43 (371)
345 2f1r_A Molybdopterin-guanine d 79.4 0.34 1.2E-05 39.6 -0.3 19 70-88 3-21 (171)
346 1svm_A Large T antigen; AAA+ f 79.3 0.83 2.8E-05 42.3 2.3 27 62-88 162-188 (377)
347 2r2a_A Uncharacterized protein 79.3 0.83 2.8E-05 38.2 2.1 20 71-90 7-26 (199)
348 1xp8_A RECA protein, recombina 79.1 1.3 4.3E-05 40.8 3.5 34 60-93 63-98 (366)
349 3nh6_A ATP-binding cassette SU 79.0 0.42 1.4E-05 42.9 0.2 25 62-86 73-97 (306)
350 1vht_A Dephospho-COA kinase; s 78.9 0.61 2.1E-05 39.0 1.2 18 70-87 5-22 (218)
351 2xb4_A Adenylate kinase; ATP-b 78.9 0.59 2E-05 39.5 1.1 18 71-88 2-19 (223)
352 2zan_A Vacuolar protein sortin 78.6 0.65 2.2E-05 43.8 1.4 19 68-86 166-184 (444)
353 1odf_A YGR205W, hypothetical 3 78.5 0.62 2.1E-05 41.4 1.1 21 67-87 29-49 (290)
354 2grj_A Dephospho-COA kinase; T 78.4 0.61 2.1E-05 38.8 1.0 20 69-88 12-31 (192)
355 1ak2_A Adenylate kinase isoenz 78.3 0.73 2.5E-05 39.1 1.5 20 69-88 16-35 (233)
356 3pxi_A Negative regulator of g 78.3 1.4 4.7E-05 44.5 3.7 21 67-87 199-219 (758)
357 2iut_A DNA translocase FTSK; n 78.0 1.6 5.4E-05 42.6 3.9 42 69-111 214-255 (574)
358 3lda_A DNA repair protein RAD5 77.9 1 3.5E-05 42.0 2.4 29 65-93 174-202 (400)
359 2vp4_A Deoxynucleoside kinase; 77.8 0.79 2.7E-05 38.9 1.5 21 66-86 17-37 (230)
360 4anj_A Unconventional myosin-V 77.5 1.6 5.5E-05 45.7 4.0 32 63-95 138-169 (1052)
361 2bbs_A Cystic fibrosis transme 77.2 0.77 2.6E-05 40.8 1.3 22 65-86 60-81 (290)
362 1a7j_A Phosphoribulokinase; tr 77.1 1 3.5E-05 39.9 2.2 20 69-88 5-24 (290)
363 4b4t_H 26S protease regulatory 77.0 0.67 2.3E-05 44.1 0.9 20 67-86 241-260 (467)
364 1g5t_A COB(I)alamin adenosyltr 77.0 1.8 6E-05 36.2 3.4 37 68-109 27-63 (196)
365 2pjz_A Hypothetical protein ST 77.0 0.8 2.7E-05 40.1 1.4 23 64-87 26-48 (263)
366 1sq5_A Pantothenate kinase; P- 76.6 0.73 2.5E-05 41.1 1.1 21 67-87 78-98 (308)
367 1xjc_A MOBB protein homolog; s 76.6 1 3.4E-05 36.7 1.8 25 70-95 5-29 (169)
368 3be4_A Adenylate kinase; malar 76.5 0.73 2.5E-05 38.6 1.0 19 70-88 6-24 (217)
369 3m6a_A ATP-dependent protease 76.5 0.83 2.8E-05 44.3 1.5 20 68-87 107-126 (543)
370 3qks_A DNA double-strand break 76.5 0.8 2.7E-05 38.2 1.2 18 70-87 24-41 (203)
371 4b4t_I 26S protease regulatory 76.4 0.78 2.7E-05 43.2 1.2 19 68-86 215-233 (437)
372 1ltq_A Polynucleotide kinase; 76.1 0.81 2.8E-05 40.3 1.2 18 71-88 4-21 (301)
373 2onk_A Molybdate/tungstate ABC 76.1 0.86 2.9E-05 39.3 1.3 22 65-87 21-42 (240)
374 3fvq_A Fe(3+) IONS import ATP- 75.7 0.88 3E-05 41.8 1.3 23 64-86 25-47 (359)
375 1v5w_A DMC1, meiotic recombina 75.6 1.4 4.9E-05 39.9 2.7 33 60-92 112-145 (343)
376 3ake_A Cytidylate kinase; CMP 75.3 0.87 3E-05 37.4 1.1 18 71-88 4-21 (208)
377 1uj2_A Uridine-cytidine kinase 75.3 0.87 3E-05 39.2 1.1 18 70-87 23-40 (252)
378 3k1j_A LON protease, ATP-depen 75.1 0.83 2.8E-05 44.9 1.1 23 65-87 56-78 (604)
379 1g41_A Heat shock protein HSLU 75.1 1 3.5E-05 42.6 1.7 18 69-86 50-67 (444)
380 3qf4_B Uncharacterized ABC tra 75.0 1.3 4.3E-05 43.6 2.4 25 62-86 374-398 (598)
381 3ice_A Transcription terminati 74.9 4.8 0.00017 37.5 6.1 28 61-88 166-193 (422)
382 3qkt_A DNA double-strand break 74.9 0.91 3.1E-05 41.1 1.2 18 70-87 24-41 (339)
383 1np6_A Molybdopterin-guanine d 74.9 1.2 3.9E-05 36.5 1.7 19 70-88 7-25 (174)
384 3sop_A Neuronal-specific septi 74.8 0.85 2.9E-05 40.0 0.9 16 71-86 4-19 (270)
385 1gtv_A TMK, thymidylate kinase 74.6 0.41 1.4E-05 39.8 -1.2 18 71-88 2-19 (214)
386 1z47_A CYSA, putative ABC-tran 74.5 1 3.6E-05 41.3 1.5 22 65-86 37-58 (355)
387 3rlf_A Maltose/maltodextrin im 74.1 1.1 3.6E-05 41.6 1.5 23 64-86 24-46 (381)
388 1e69_A Chromosome segregation 74.0 1.4 4.8E-05 39.5 2.2 19 70-88 25-43 (322)
389 2yyz_A Sugar ABC transporter, 73.9 1.1 3.7E-05 41.2 1.5 22 65-86 25-46 (359)
390 2ce7_A Cell division protein F 73.7 1.1 3.6E-05 42.9 1.3 17 70-86 50-66 (476)
391 2it1_A 362AA long hypothetical 73.6 1.1 3.8E-05 41.2 1.5 23 64-86 24-46 (362)
392 2f6r_A COA synthase, bifunctio 73.6 0.94 3.2E-05 39.9 0.9 20 70-89 76-95 (281)
393 2i1q_A DNA repair and recombin 73.5 1.3 4.6E-05 39.5 2.0 28 65-92 94-121 (322)
394 3gd7_A Fusion complex of cysti 73.4 1.1 3.7E-05 41.7 1.3 25 62-86 40-64 (390)
395 1nij_A Hypothetical protein YJ 73.4 1 3.5E-05 40.4 1.1 19 70-88 5-23 (318)
396 1pui_A ENGB, probable GTP-bind 73.3 1 3.5E-05 37.0 1.1 21 66-86 23-43 (210)
397 1q57_A DNA primase/helicase; d 73.3 1.3 4.3E-05 42.4 1.8 33 61-93 234-266 (503)
398 1lkx_A Myosin IE heavy chain; 73.1 1.2 4.3E-05 44.5 1.8 32 63-95 88-119 (697)
399 4a82_A Cystic fibrosis transme 72.9 1.2 4.2E-05 43.5 1.6 23 64-86 362-384 (578)
400 1q3t_A Cytidylate kinase; nucl 72.9 1.3 4.5E-05 37.6 1.6 23 66-88 13-35 (236)
401 1pzn_A RAD51, DNA repair and r 72.8 1.4 4.8E-05 40.1 2.0 31 61-91 122-153 (349)
402 2r8r_A Sensor protein; KDPD, P 72.8 2.8 9.5E-05 35.9 3.7 37 71-110 8-44 (228)
403 2vhj_A Ntpase P4, P4; non- hyd 72.7 1.5 5E-05 39.8 2.0 25 66-90 120-144 (331)
404 1g29_1 MALK, maltose transport 72.7 1.2 4.2E-05 41.1 1.5 22 65-86 25-46 (372)
405 2yl4_A ATP-binding cassette SU 72.7 1.5 5.2E-05 42.9 2.3 26 62-87 363-388 (595)
406 4eaq_A DTMP kinase, thymidylat 72.6 1.1 3.9E-05 38.1 1.2 22 67-88 24-45 (229)
407 2qm8_A GTPase/ATPase; G protei 72.5 1.6 5.5E-05 39.5 2.3 27 62-88 48-74 (337)
408 3r20_A Cytidylate kinase; stru 72.5 1.1 3.8E-05 38.5 1.1 19 70-88 10-28 (233)
409 1ypw_A Transitional endoplasmi 72.3 1.2 4.1E-05 45.4 1.5 21 66-86 235-255 (806)
410 3tqc_A Pantothenate kinase; bi 72.2 1.2 3.9E-05 40.3 1.2 17 71-87 94-110 (321)
411 1v43_A Sugar-binding transport 72.1 1.3 4.3E-05 40.9 1.5 23 64-86 32-54 (372)
412 2v26_A Myosin VI; calmodulin-b 72.1 2.7 9.2E-05 42.7 3.9 25 65-89 136-160 (784)
413 3b5x_A Lipid A export ATP-bind 71.4 1.1 3.8E-05 43.8 1.0 28 61-88 361-388 (582)
414 3f9v_A Minichromosome maintena 71.2 1.8 6.1E-05 42.5 2.4 16 71-86 329-344 (595)
415 1w9i_A Myosin II heavy chain; 71.2 1.5 5E-05 44.4 1.8 26 64-89 167-192 (770)
416 3b60_A Lipid A export ATP-bind 70.6 1.4 4.8E-05 43.0 1.5 24 64-87 364-387 (582)
417 4f4c_A Multidrug resistance pr 70.3 2 6.7E-05 46.3 2.6 27 61-87 1097-1123(1321)
418 3tui_C Methionine import ATP-b 70.1 1.5 5.1E-05 40.4 1.5 26 61-86 46-71 (366)
419 3qf4_A ABC transporter, ATP-bi 70.0 1.5 5.2E-05 42.9 1.6 23 64-86 364-386 (587)
420 2npi_A Protein CLP1; CLP1-PCF1 70.0 1.8 6.2E-05 41.1 2.1 26 62-87 131-156 (460)
421 3d31_A Sulfate/molybdate ABC t 69.7 1 3.5E-05 41.2 0.2 22 65-86 22-43 (348)
422 2qag_B Septin-6, protein NEDD5 69.5 2.3 7.7E-05 40.0 2.6 27 61-87 32-60 (427)
423 4db1_A Myosin-7; S1DC, cardiac 69.5 1.7 5.7E-05 44.1 1.8 30 64-94 166-195 (783)
424 1w7j_A Myosin VA; motor protei 69.5 1.7 5.7E-05 44.2 1.8 30 65-95 152-181 (795)
425 1r6b_X CLPA protein; AAA+, N-t 69.5 1.5 5.1E-05 44.2 1.4 21 67-87 205-225 (758)
426 2h92_A Cytidylate kinase; ross 69.4 1.7 5.7E-05 36.2 1.5 18 70-87 4-21 (219)
427 1u0j_A DNA replication protein 69.4 2.7 9.2E-05 36.9 2.9 19 69-87 104-122 (267)
428 3zvl_A Bifunctional polynucleo 69.3 1.6 5.3E-05 40.8 1.4 19 69-87 258-276 (416)
429 3tqf_A HPR(Ser) kinase; transf 69.1 1.8 6.2E-05 35.6 1.6 22 68-89 15-36 (181)
430 3cmu_A Protein RECA, recombina 68.5 2.9 9.8E-05 46.8 3.4 29 66-94 1424-1452(2050)
431 2dyk_A GTP-binding protein; GT 68.4 1.6 5.4E-05 33.8 1.1 16 71-86 3-18 (161)
432 2dhr_A FTSH; AAA+ protein, hex 68.3 1.5 5.2E-05 42.1 1.2 17 70-86 65-81 (499)
433 1kk8_A Myosin heavy chain, str 67.7 1.7 5.8E-05 44.5 1.4 29 65-94 165-193 (837)
434 2ce2_X GTPase HRAS; signaling 67.4 1.6 5.6E-05 33.6 1.0 16 71-86 5-20 (166)
435 1z2a_A RAS-related protein RAB 67.1 1.8 6E-05 33.7 1.1 16 71-86 7-22 (168)
436 1c9k_A COBU, adenosylcobinamid 67.0 2.1 7.3E-05 35.2 1.6 17 72-88 2-18 (180)
437 1oxx_K GLCV, glucose, ABC tran 66.7 1 3.4E-05 41.3 -0.5 23 64-86 26-48 (353)
438 2ged_A SR-beta, signal recogni 66.7 1.8 6.1E-05 34.9 1.1 17 70-86 49-65 (193)
439 1g8x_A Myosin II heavy chain f 66.1 2 7E-05 44.8 1.6 26 64-89 167-192 (1010)
440 2ycu_A Non muscle myosin 2C, a 65.8 2.1 7.2E-05 44.7 1.7 30 64-94 141-170 (995)
441 1r6b_X CLPA protein; AAA+, N-t 65.7 1.8 6.2E-05 43.6 1.1 17 71-87 490-506 (758)
442 1ek0_A Protein (GTP-binding pr 65.7 1.9 6.7E-05 33.5 1.1 16 71-86 5-20 (170)
443 1z0j_A RAB-22, RAS-related pro 65.7 1.9 6.6E-05 33.6 1.1 16 71-86 8-23 (170)
444 2f9l_A RAB11B, member RAS onco 65.7 2 6.8E-05 35.0 1.2 16 71-86 7-22 (199)
445 1ky3_A GTP-binding protein YPT 65.6 1.9 6.6E-05 34.0 1.1 17 70-86 9-25 (182)
446 3cmu_A Protein RECA, recombina 65.5 3.4 0.00011 46.3 3.2 37 60-96 1070-1108(2050)
447 1nrj_B SR-beta, signal recogni 65.3 2 6.7E-05 35.5 1.1 17 70-86 13-29 (218)
448 3cmw_A Protein RECA, recombina 65.1 3.7 0.00013 45.2 3.5 40 65-109 30-69 (1706)
449 1w1w_A Structural maintenance 65.0 2.2 7.5E-05 39.8 1.5 20 68-87 25-44 (430)
450 2dfs_A Myosin-5A; myosin-V, in 65.0 2.3 7.9E-05 44.8 1.8 30 65-95 152-181 (1080)
451 1lw7_A Transcriptional regulat 64.9 1.6 5.3E-05 39.9 0.4 19 69-87 170-188 (365)
452 1u8z_A RAS-related protein RAL 64.8 2.1 7.1E-05 33.2 1.1 17 70-86 5-21 (168)
453 1oix_A RAS-related protein RAB 64.6 2 6.9E-05 34.9 1.1 16 71-86 31-46 (191)
454 1p5z_B DCK, deoxycytidine kina 64.3 2.2 7.4E-05 36.8 1.2 19 69-87 24-42 (263)
455 4akg_A Glutathione S-transfera 64.3 2.1 7.1E-05 49.3 1.4 19 68-86 1266-1284(2695)
456 1kao_A RAP2A; GTP-binding prot 64.3 2.1 7.3E-05 33.1 1.1 16 71-86 5-20 (167)
457 1g16_A RAS-related protein SEC 64.2 2 7E-05 33.4 1.0 16 71-86 5-20 (170)
458 1w5s_A Origin recognition comp 64.2 1.8 6E-05 39.6 0.6 21 68-88 49-71 (412)
459 1svi_A GTP-binding protein YSX 64.0 2 6.8E-05 34.6 0.9 17 70-86 24-40 (195)
460 3v9p_A DTMP kinase, thymidylat 64.0 2.5 8.5E-05 36.1 1.5 26 68-94 24-49 (227)
461 4akg_A Glutathione S-transfera 63.7 4.8 0.00016 46.4 4.1 22 67-88 921-942 (2695)
462 2dpy_A FLII, flagellum-specifi 63.7 2.6 8.8E-05 39.7 1.7 26 60-86 149-174 (438)
463 4edh_A DTMP kinase, thymidylat 63.5 2.3 7.8E-05 35.8 1.2 20 69-88 6-25 (213)
464 2erx_A GTP-binding protein DI- 63.3 2.3 7.8E-05 33.1 1.1 16 71-86 5-20 (172)
465 1c1y_A RAS-related protein RAP 63.2 2.3 7.9E-05 33.0 1.1 16 71-86 5-20 (167)
466 2ocp_A DGK, deoxyguanosine kin 63.2 2.2 7.5E-05 36.2 1.1 18 70-87 3-20 (241)
467 1wms_A RAB-9, RAB9, RAS-relate 63.0 2.3 7.9E-05 33.5 1.1 16 71-86 9-24 (177)
468 1yqt_A RNAse L inhibitor; ATP- 62.7 2.8 9.5E-05 40.6 1.8 22 65-86 43-64 (538)
469 2fna_A Conserved hypothetical 62.3 2.3 8E-05 37.7 1.1 19 70-88 31-49 (357)
470 3pqc_A Probable GTP-binding pr 62.3 2.2 7.6E-05 34.1 0.9 17 70-86 24-40 (195)
471 2wji_A Ferrous iron transport 62.1 2.6 8.8E-05 33.2 1.2 16 71-86 5-20 (165)
472 3ux8_A Excinuclease ABC, A sub 61.8 2.6 9.1E-05 41.8 1.5 24 64-87 343-366 (670)
473 1r2q_A RAS-related protein RAB 61.7 2.5 8.7E-05 32.8 1.1 16 71-86 8-23 (170)
474 1qvr_A CLPB protein; coiled co 61.6 2.3 7.8E-05 43.6 1.0 22 67-88 189-210 (854)
475 3tw8_B RAS-related protein RAB 61.6 2.5 8.6E-05 33.3 1.1 16 71-86 11-26 (181)
476 1z08_A RAS-related protein RAB 61.5 2.5 8.7E-05 32.9 1.1 16 71-86 8-23 (170)
477 3lxx_A GTPase IMAP family memb 61.5 2.5 8.6E-05 35.7 1.1 17 70-86 30-46 (239)
478 2wsm_A Hydrogenase expression/ 61.3 3 0.0001 34.5 1.5 19 70-88 31-49 (221)
479 3q85_A GTP-binding protein REM 61.2 2.6 9E-05 32.8 1.1 16 71-86 4-19 (169)
480 3lre_A Kinesin-like protein KI 60.9 3.5 0.00012 37.7 2.0 27 60-86 95-123 (355)
481 2obl_A ESCN; ATPase, hydrolase 60.9 2.6 8.7E-05 38.4 1.1 26 60-86 63-88 (347)
482 3lv8_A DTMP kinase, thymidylat 60.8 2.9 9.8E-05 35.9 1.3 21 68-88 26-46 (236)
483 2wjg_A FEOB, ferrous iron tran 60.8 2.7 9.2E-05 33.6 1.1 17 70-86 8-24 (188)
484 2qen_A Walker-type ATPase; unk 60.8 2.7 9.2E-05 37.2 1.2 19 70-88 32-50 (350)
485 3q72_A GTP-binding protein RAD 60.6 2.6 8.9E-05 32.7 1.0 16 71-86 4-19 (166)
486 3tmk_A Thymidylate kinase; pho 60.4 2.9 9.9E-05 35.3 1.3 21 68-88 4-24 (216)
487 1i84_S Smooth muscle myosin he 60.4 2.9 9.9E-05 44.5 1.6 30 64-94 164-193 (1184)
488 4tmk_A Protein (thymidylate ki 60.3 2.9 0.0001 35.2 1.3 27 69-96 3-29 (213)
489 2lkc_A Translation initiation 60.3 3.2 0.00011 32.6 1.5 19 68-86 7-25 (178)
490 2zej_A Dardarin, leucine-rich 60.3 2.8 9.7E-05 33.6 1.2 16 71-86 4-19 (184)
491 2fn4_A P23, RAS-related protei 60.1 2.7 9.1E-05 33.1 1.0 17 70-86 10-26 (181)
492 2nzj_A GTP-binding protein REM 60.1 2.8 9.6E-05 32.8 1.1 16 71-86 6-21 (175)
493 2gj8_A MNME, tRNA modification 59.9 2.7 9.1E-05 33.5 0.9 18 69-86 4-21 (172)
494 1upt_A ARL1, ADP-ribosylation 59.8 2.9 9.8E-05 32.6 1.1 17 70-86 8-24 (171)
495 2y8e_A RAB-protein 6, GH09086P 59.8 2.7 9.3E-05 33.0 1.0 16 71-86 16-31 (179)
496 4f4c_A Multidrug resistance pr 59.8 3 0.0001 44.9 1.6 27 61-87 436-462 (1321)
497 1z0f_A RAB14, member RAS oncog 59.8 2.9 9.8E-05 32.8 1.1 16 71-86 17-32 (179)
498 3con_A GTPase NRAS; structural 59.8 2.9 9.8E-05 33.5 1.1 16 71-86 23-38 (190)
499 3j16_B RLI1P; ribosome recycli 59.8 3 0.0001 41.0 1.5 22 65-86 99-120 (608)
500 3bc1_A RAS-related protein RAB 59.6 2.9 9.9E-05 33.3 1.1 16 71-86 13-28 (195)
No 1
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.96 E-value=4.6e-29 Score=220.70 Aligned_cols=174 Identities=48% Similarity=0.822 Sum_probs=146.3
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
..++|.++++.+.. +++++++||||||||+++.+++++.....+.+....++++.|+|+++.|+++++..
T Consensus 62 ~~~~q~~~i~~i~~----------g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~ 131 (235)
T 3llm_A 62 VKKFESEILEAISQ----------NSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAF 131 (235)
T ss_dssp GGGGHHHHHHHHHH----------CSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhc----------CCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHH
Confidence 44666777666654 56789999999999999999999887766555566889999999999999999998
Q ss_pred HhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccc
Q psy496 125 ERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKR 204 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~ 204 (319)
.++..+ |..+|+..+.+......+++|+|+|||++++++.. .++++++||+||+|++++..++....++.+....
T Consensus 132 ~~~~~~---~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~ 206 (235)
T 3llm_A 132 ERGEEP---GKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAY 206 (235)
T ss_dssp TTTCCT---TSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHC
T ss_pred Hhcccc---CceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhC
Confidence 887766 88889888777665545688999999999999965 4899999999999998889998888888887766
Q ss_pred cCceEEEeccccChhhHhhhhCCCCEEEe
Q psy496 205 KDLKLILMSATLNAEKFSQFFGGAPILHI 233 (319)
Q Consensus 205 ~~~qiv~lSAT~~~~~l~~~l~~~~~i~~ 233 (319)
++.|+++||||++.+.+++||++++++.+
T Consensus 207 ~~~~~il~SAT~~~~~~~~~~~~~pvi~v 235 (235)
T 3llm_A 207 PEVRIVLMSATIDTSMFCEYFFNCPIIEV 235 (235)
T ss_dssp TTSEEEEEECSSCCHHHHHHTTSCCCEEC
T ss_pred CCCeEEEEecCCCHHHHHHHcCCCCEEeC
Confidence 78899999999977789999998887653
No 2
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.95 E-value=1.6e-27 Score=243.64 Aligned_cols=226 Identities=37% Similarity=0.570 Sum_probs=174.5
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
++++|+.+|+.+.. .+++++|+||||||||++++..++......+ ...++++++|+|+||.|+++++++
T Consensus 94 P~~~q~~~i~~~l~---------~~~~vii~gpTGSGKTtllp~ll~~~~~~~~--~g~~ilvl~P~r~La~q~~~~l~~ 162 (773)
T 2xau_A 94 PVHAQRDEFLKLYQ---------NNQIMVFVGETGSGKTTQIPQFVLFDEMPHL--ENTQVACTQPRRVAAMSVAQRVAE 162 (773)
T ss_dssp GGGGGHHHHHHHHH---------HCSEEEEECCTTSSHHHHHHHHHHHHHCGGG--GTCEEEEEESCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHh---------CCCeEEEECCCCCCHHHHHHHHHHHhccccC--CCceEEecCchHHHHHHHHHHHHH
Confidence 34567777766654 3567999999999999966555444332221 124688888999999999999998
Q ss_pred HhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccc
Q psy496 125 ERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKR 204 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~ 204 (319)
.++..+ +..+|+.++.++... .+++|+++|||++.+.+..++.+.++++||+||+|+|++..+.+...++.+....
T Consensus 163 ~~~~~v---~~~vG~~i~~~~~~~-~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~ 238 (773)
T 2xau_A 163 EMDVKL---GEEVGYSIRFENKTS-NKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR 238 (773)
T ss_dssp HTTCCB---TTTEEEEETTEEECC-TTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC
T ss_pred HhCCch---hheecceeccccccC-CCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhC
Confidence 887766 888888877665543 4678999999999999977888999999999999998888888888888887766
Q ss_pred cCceEEEeccccChhhHhhhhCCCCEEEeCCccccceeeeehhhhhhhhhhHHHHHHHHhhhhhhhccccCCCcEEEeCC
Q psy496 205 KDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGGAPILHIPG 284 (319)
Q Consensus 205 ~~~qiv~lSAT~~~~~l~~~l~~~~~i~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~ 284 (319)
++.|+++||||++.+.+++|+++.+++.++++.+|++++|.... ..+....+.....+. .....+|++|||++|
T Consensus 239 ~~~~iIl~SAT~~~~~l~~~~~~~~vi~v~gr~~pv~~~~~~~~----~~~~~~~~l~~l~~~--~~~~~~g~iLVF~~~ 312 (773)
T 2xau_A 239 PDLKIIIMSATLDAEKFQRYFNDAPLLAVPGRTYPVELYYTPEF----QRDYLDSAIRTVLQI--HATEEAGDILLFLTG 312 (773)
T ss_dssp TTCEEEEEESCSCCHHHHHHTTSCCEEECCCCCCCEEEECCSSC----CSCHHHHHHHHHHHH--HHHSCSCEEEEECSC
T ss_pred CCceEEEEeccccHHHHHHHhcCCCcccccCcccceEEEEecCC----chhHHHHHHHHHHHH--HHhcCCCCEEEECCC
Confidence 78899999999999999999999999999999999999987653 122222222222222 112237899999999
Q ss_pred ccccccc
Q psy496 285 FTYPVQE 291 (319)
Q Consensus 285 R~~~v~~ 291 (319)
+..+.++
T Consensus 313 ~~~i~~l 319 (773)
T 2xau_A 313 EDEIEDA 319 (773)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9877554
No 3
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.94 E-value=3.4e-26 Score=249.31 Aligned_cols=252 Identities=16% Similarity=0.113 Sum_probs=166.4
Q ss_pred cchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCC------CCccE
Q psy496 31 LDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNR------GSECC 104 (319)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~------~~~~~ 104 (319)
+++|....|..-....++|.+++|.+.. .++|++++||||||||.++.+++++.+..... ....+
T Consensus 66 Lp~~~~~~f~g~~~ln~iQs~~~~~al~---------~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k 136 (1724)
T 4f92_B 66 LPKYAQAGFEGFKTLNRIQSKLYRAALE---------TDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFK 136 (1724)
T ss_dssp SCGGGSTTCTTCSBCCHHHHHTHHHHHT---------CCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCE
T ss_pred cCHHHHHhcCCCCCCCHHHHHHHHHHHc---------CCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCE
Confidence 4556555554334467899999988653 56889999999999999999999999865321 12458
Q ss_pred EEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccC----CCCceEEEECchHHHHHHhcCC---CCCCccE
Q psy496 105 IMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELP----RKRGSILYCTAGILPEVMQSDP---ILSGVSH 177 (319)
Q Consensus 105 vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~----~~~~~Iiv~Tpg~ll~~l~~~~---~l~~v~~ 177 (319)
++|++|+|+||.|..+.+.+.++.. |..++. ..++... ...++|+|+||+++..++.+.. .++++++
T Consensus 137 ~lyiaP~kALa~e~~~~l~~~~~~~----gi~V~~--~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~ 210 (1724)
T 4f92_B 137 IIYIAPMRSLVQEMVGSFGKRLATY----GITVAE--LTGDHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRL 210 (1724)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTT----TCCEEE--CCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEE
T ss_pred EEEECCHHHHHHHHHHHHHHHHhhC----CCEEEE--EECCCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCE
Confidence 9999999999999999998877643 555542 2222111 1357899999999855554432 2789999
Q ss_pred EEEecccc----cccchhHHHHHHHhh-hccccCceEEEecccc-ChhhHhhhhCCCC---EEEeC--Cccccceeeeeh
Q psy496 178 IVMDEIHE----RSMISDFLLAILKDV-TDKRKDLKLILMSATL-NAEKFSQFFGGAP---ILHIP--GFTYPVQEYYLE 246 (319)
Q Consensus 178 vViDEah~----~~~~~~~~~~~l~~~-~~~~~~~qiv~lSAT~-~~~~l~~~l~~~~---~i~~~--~r~~~v~~~~~~ 246 (319)
|||||+|. ||...+.++.++... ...+++.|+|+||||+ |++++++|++..+ .+.++ .|+.|++.++..
T Consensus 211 vIiDEvH~l~d~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N~~dvA~wL~~~~~~~~~~~~~~~RPvpL~~~~~~ 290 (1724)
T 4f92_B 211 IILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYEDVATFLRVDPAKGLFYFDNSFRPVPLEQTYVG 290 (1724)
T ss_dssp EEETTGGGGGSTTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTTHHHHHHHTTCCHHHHEEECCGGGCSSCEEEECCE
T ss_pred EEEecchhcCCccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCCHHHHHHHhCCCCCCCeEEECCCCccCccEEEEec
Confidence 99999995 555555555544333 3356688999999999 9999999998642 34444 455566555543
Q ss_pred hhhhhhhhhHHHHHHHHhhhhhhhccccCCCcEEEeCCcccccccc-chHhHHH
Q psy496 247 DVLNMTRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEY-YLEDVLN 299 (319)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~v~~~-~~~~~~~ 299 (319)
.. ..........+....++.. .....++++||||++|+.+.+.. ++.+.+.
T Consensus 291 ~~-~~~~~~~~~~~~~~~~~~v-~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~ 342 (1724)
T 4f92_B 291 IT-EKKAIKRFQIMNEIVYEKI-MEHAGKNQVLVFVHSRKETGKTARAIRDMCL 342 (1724)
T ss_dssp EC-CCCHHHHHHHHHHHHHHHH-TTCCSSCCEEEECSSTTTTHHHHHHHHHHHH
T ss_pred cC-CcchhhhhHHHHHHHHHHH-HHHhcCCcEEEECCCHHHHHHHHHHHHHHHh
Confidence 22 1111111112222222221 22234789999999999987663 3444433
No 4
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.94 E-value=5.6e-27 Score=255.41 Aligned_cols=241 Identities=13% Similarity=0.126 Sum_probs=163.9
Q ss_pred chHHHhccCC-ccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecc
Q psy496 32 DDEIARNRGS-ECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQP 110 (319)
Q Consensus 32 ~~~~~~~~~~-~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~P 110 (319)
+..++..+.. -....|+|.++++.+.+ .++|++++||||||||+++.+|+++.+.... ..+++|++|
T Consensus 913 ~~~~e~l~~~~f~~fnpiQ~q~~~~l~~---------~~~nvlv~APTGSGKTliaelail~~l~~~~---~~kavyi~P 980 (1724)
T 4f92_B 913 NSAFESLYQDKFPFFNPIQTQVFNTVYN---------SDDNVFVGAPTGSGKTICAEFAILRMLLQSS---EGRCVYITP 980 (1724)
T ss_dssp CHHHHTTTTTTCSBCCHHHHHHHHHHHS---------CCSCEEEECCTTSCCHHHHHHHHHHHHHHCT---TCCEEEECS
T ss_pred CHHHHHHHHhcCCCCCHHHHHHHHHHhc---------CCCcEEEEeCCCCCchHHHHHHHHHHHHhCC---CCEEEEEcC
Confidence 4445555433 23357999999988753 4578999999999999999999999887644 347899999
Q ss_pred cHHHHHHHHHHHHHHhccccCCCCceEEEEEeccccc---CCCCceEEEECchHHHHHHhc---CCCCCCccEEEEeccc
Q psy496 111 RRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKEL---PRKRGSILYCTAGILPEVMQS---DPILSGVSHIVMDEIH 184 (319)
Q Consensus 111 tr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~---~~~~~~Iiv~Tpg~ll~~l~~---~~~l~~v~~vViDEah 184 (319)
+|+||.|.++.+.+.++... |..++.... +... ...+++|+|+|||++..+++. ...++++++||+||+|
T Consensus 981 ~raLa~q~~~~~~~~f~~~~---g~~V~~ltG-d~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H 1056 (1724)
T 4f92_B 981 MEALAEQVYMDWYEKFQDRL---NKKVVLLTG-ETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVH 1056 (1724)
T ss_dssp CHHHHHHHHHHHHHHHTTTS---CCCEEECCS-CHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGG
T ss_pred hHHHHHHHHHHHHHHhchhc---CCEEEEEEC-CCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechh
Confidence 99999999999988877654 666653221 1111 113568999999998766643 2237899999999999
Q ss_pred c----cccchhHHHHHHHhhhc-cccCceEEEecccc-ChhhHhhhhCCC--CEEEe--CCccccceeeeehhhhhhhhh
Q psy496 185 E----RSMISDFLLAILKDVTD-KRKDLKLILMSATL-NAEKFSQFFGGA--PILHI--PGFTYPVQEYYLEDVLNMTRK 254 (319)
Q Consensus 185 ~----~~~~~~~~~~~l~~~~~-~~~~~qiv~lSAT~-~~~~l~~~l~~~--~~i~~--~~r~~~v~~~~~~~~~~~~~~ 254 (319)
. +|...+..+.+++.+.. .+++.|+|+||||+ |++++++|++.. ..+.+ ..|+.|++.++...... +.
T Consensus 1057 ~l~d~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N~~dla~WL~~~~~~~~~~~~~~RPvpL~~~i~~~~~~--~~ 1134 (1724)
T 4f92_B 1057 LIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAHWLGCSATSTFNFHPNVRPVPLELHIQGFNIS--HT 1134 (1724)
T ss_dssp GGGSTTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTTHHHHHHHHTCCSTTEEECCGGGCSSCEEEEEEEECCC--SH
T ss_pred hcCCCCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCCHHHHHHHhCCCCCCeEEeCCCCCCCCeEEEEEeccCC--Cc
Confidence 6 33334455555554443 55678999999999 999999999753 34444 45666666665443322 22
Q ss_pred hHHHHHH-HHhhhhhhhccccCCCcEEEeCCccccccc
Q psy496 255 DLKLILM-SATLNAEKFSQFFGGAPILHIPGFTYPVQE 291 (319)
Q Consensus 255 ~~~~~~~-~~~~~~~~~~~~~~g~~LVFlp~R~~~v~~ 291 (319)
..+...+ ....... .....++++|||+++|..+...
T Consensus 1135 ~~~~~~~~~~~~~~i-~~~~~~~~~lVF~~sR~~~~~~ 1171 (1724)
T 4f92_B 1135 QTRLLSMAKPVYHAI-TKHSPKKPVIVFVPSRKQTRLT 1171 (1724)
T ss_dssp HHHHHTTHHHHHHHH-HHHCSSSCEEEEESSHHHHHHH
T ss_pred hhhhhhhcchHHHHH-HHhcCCCCeeeeCCCHHHHHHH
Confidence 2222222 2222221 2233478999999999887544
No 5
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=99.93 E-value=2.7e-26 Score=233.03 Aligned_cols=220 Identities=16% Similarity=0.158 Sum_probs=152.4
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
++.++|.++++.+. ++++++++||||||||+++++++++.+..+ .++++++|+|+||.|.++++.
T Consensus 25 ~l~~~Q~~~i~~i~----------~~~~~lv~apTGsGKT~~~~l~il~~~~~~-----~~~l~i~P~r~La~q~~~~~~ 89 (702)
T 2p6r_A 25 ELFPPQAEAVEKVF----------SGKNLLLAMPTAAGKTLLAEMAMVREAIKG-----GKSLYVVPLRALAGEKYESFK 89 (702)
T ss_dssp CCCCCCHHHHHHHT----------TCSCEEEECSSHHHHHHHHHHHHHHHHHTT-----CCEEEEESSHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHh----------CCCcEEEEcCCccHHHHHHHHHHHHHHHhC-----CcEEEEeCcHHHHHHHHHHHH
Confidence 35689999998854 257899999999999999999999886532 378888899999999999884
Q ss_pred HHhccccCCCCceEEEEEeccccc--CCCCceEEEECchHHHHHHhcCCC-CCCccEEEEecccc-----cccchhHHHH
Q psy496 124 QERDEQCGRPGSSVGYQIRLEKEL--PRKRGSILYCTAGILPEVMQSDPI-LSGVSHIVMDEIHE-----RSMISDFLLA 195 (319)
Q Consensus 124 ~~~~~~~~~~g~~vg~~~~~~~~~--~~~~~~Iiv~Tpg~ll~~l~~~~~-l~~v~~vViDEah~-----~~~~~~~~~~ 195 (319)
. +... |..++......... ...+++|+|+|||++.+++..++. ++++++||+||+|+ |+...+.++.
T Consensus 90 ~-~~~~----g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~ 164 (702)
T 2p6r_A 90 K-WEKI----GLRIGISTGDYESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVT 164 (702)
T ss_dssp T-TTTT----TCCEEEECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHH
T ss_pred H-HHhc----CCEEEEEeCCCCcchhhccCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHH
Confidence 3 2221 44444322211111 113678999999999999977666 89999999999998 4444555555
Q ss_pred HHHhhhccccCceEEEecccc-ChhhHhhhhCCCCEEEeCCccccceeeeehhh-hhhhhhhH---HHH-HHHHhhhhhh
Q psy496 196 ILKDVTDKRKDLKLILMSATL-NAEKFSQFFGGAPILHIPGFTYPVQEYYLEDV-LNMTRKDL---KLI-LMSATLNAEK 269 (319)
Q Consensus 196 ~l~~~~~~~~~~qiv~lSAT~-~~~~l~~~l~~~~~i~~~~r~~~v~~~~~~~~-~~~~~~~~---~~~-~~~~~~~~~~ 269 (319)
.++. .+++.|+|+||||+ |.+++++|++ .+.+..++|++|++..+.... ....+... +.. ......+.
T Consensus 165 ~l~~---~~~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 238 (702)
T 2p6r_A 165 KMRR---MNKALRVIGLSATAPNVTEIAEWLD-ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEEC-- 238 (702)
T ss_dssp HHHH---HCTTCEEEEEECCCTTHHHHHHHTT-CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHH--
T ss_pred HHHh---cCcCceEEEECCCcCCHHHHHHHhC-CCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHH--
Confidence 4443 34578999999999 7999999996 667888899999876553221 00000000 000 11111111
Q ss_pred hccccCCCcEEEeCCccccccc
Q psy496 270 FSQFFGGAPILHIPGFTYPVQE 291 (319)
Q Consensus 270 ~~~~~~g~~LVFlp~R~~~v~~ 291 (319)
.. .++++|||+++|..+.+.
T Consensus 239 ~~--~~~~~LVF~~s~~~~~~~ 258 (702)
T 2p6r_A 239 VA--ENGGVLVFESTRRGAEKT 258 (702)
T ss_dssp HH--TTCCEEEECSSHHHHHHH
T ss_pred Hh--cCCCEEEEcCCHHHHHHH
Confidence 11 378999999999887544
No 6
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.93 E-value=3.8e-26 Score=209.35 Aligned_cols=188 Identities=16% Similarity=0.073 Sum_probs=128.3
Q ss_pred ccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEE
Q psy496 26 VPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCI 105 (319)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~v 105 (319)
++..+.+...+..+. .++++|.++||.++.| .+++++++||||||||++|.+|+++.+.....+ .++
T Consensus 99 l~~~l~~~l~~~g~~---~pt~iQ~~ai~~il~~--------~~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~--~~~ 165 (300)
T 3fmo_B 99 LKPQLLQGVYAMGFN---RPSKIQENALPLMLAE--------PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANKY--PQC 165 (300)
T ss_dssp CCHHHHHHHHHTTCC---SCCHHHHHHHHHHTSS--------SCCCEEEECCTTSSHHHHHHHHHHHHCCTTSCS--CCE
T ss_pred CCHHHHHHHHHcCCC---CCCHHHHHHHHHHHcC--------CCCeEEEECCCCCCccHHHHHHHHHhhhccCCC--ceE
Confidence 444444444333332 3568899999998653 347899999999999999999999987654433 356
Q ss_pred EEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccc--cCCCCceEEEECchHHHHHHhc--CCCCCCccEEEEe
Q psy496 106 MVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKE--LPRKRGSILYCTAGILPEVMQS--DPILSGVSHIVMD 181 (319)
Q Consensus 106 l~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~--~~~~~~~Iiv~Tpg~ll~~l~~--~~~l~~v~~vViD 181 (319)
++++|||+||.|+++.+..+..... +..++........ .....++|+|+|||+|++++.. ...++++++||||
T Consensus 166 lil~PtreLa~Q~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~l~~lVlD 242 (300)
T 3fmo_B 166 LCLSPTYELALQTGKVIEQMGKFYP---ELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLD 242 (300)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTST---TCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGGCSEEEET
T ss_pred EEEcCcHHHHHHHHHHHHHHHhhCC---CcEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhhceEEEEe
Confidence 7777999999999998887754322 3344433332221 1123568999999999999954 3348999999999
Q ss_pred cccccccchhHHHHHHHhhhccccCceEEEecccc--ChhhHhhhhCCCC
Q psy496 182 EIHERSMISDFLLAILKDVTDKRKDLKLILMSATL--NAEKFSQFFGGAP 229 (319)
Q Consensus 182 Eah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~l~~~~ 229 (319)
|||...-...+.......+...+++.|+++||||+ +...+++.+...|
T Consensus 243 Ead~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p 292 (300)
T 3fmo_B 243 EADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP 292 (300)
T ss_dssp THHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSC
T ss_pred CHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCC
Confidence 99973211234444444444466788999999999 5566666544333
No 7
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=99.93 E-value=2.5e-26 Score=233.63 Aligned_cols=176 Identities=19% Similarity=0.130 Sum_probs=129.3
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
.+.++|.++++.+ ...+++++++||||||||+++++++++.+...+ .++++++|+|+||.|.++++.
T Consensus 30 ~l~~~Q~~~i~~~---------~~~~~~~lv~apTGsGKT~~~~l~il~~~~~~~----~~il~i~P~r~La~q~~~~~~ 96 (715)
T 2va8_A 30 KLNPPQTEAVKKG---------LLEGNRLLLTSPTGSGKTLIAEMGIISFLLKNG----GKAIYVTPLRALTNEKYLTFK 96 (715)
T ss_dssp BCCHHHHHHHHTT---------TTTTCCEEEECCTTSCHHHHHHHHHHHHHHHSC----SEEEEECSCHHHHHHHHHHHG
T ss_pred CCCHHHHHHHHHH---------hcCCCcEEEEcCCCCcHHHHHHHHHHHHHHHCC----CeEEEEeCcHHHHHHHHHHHH
Confidence 3568899988762 123688999999999999999999998876432 489999999999999999984
Q ss_pred HHhccccCCCCceEEEEEe----cccccCCCCceEEEECchHHHHHHhcCCC-CCCccEEEEeccccccc--chhHHHHH
Q psy496 124 QERDEQCGRPGSSVGYQIR----LEKELPRKRGSILYCTAGILPEVMQSDPI-LSGVSHIVMDEIHERSM--ISDFLLAI 196 (319)
Q Consensus 124 ~~~~~~~~~~g~~vg~~~~----~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~-l~~v~~vViDEah~~~~--~~~~~~~~ 196 (319)
. +... |..++.... .+... .+++|+|+|||++.+++..++. ++++++||+||+|+.+- ....+...
T Consensus 97 ~-~~~~----g~~v~~~~G~~~~~~~~~--~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~~~~~~l~~i 169 (715)
T 2va8_A 97 D-WELI----GFKVAMTSGDYDTDDAWL--KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDPERGPVVESV 169 (715)
T ss_dssp G-GGGG----TCCEEECCSCSSSCCGGG--GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCTTTHHHHHHH
T ss_pred H-hhcC----CCEEEEEeCCCCCchhhc--CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcCCcccchHHHHH
Confidence 3 2221 334432211 11111 2578999999999999877666 89999999999998431 11122223
Q ss_pred HHhhhccccCceEEEecccc-ChhhHhhhhCCCCEEEeCCccccceeee
Q psy496 197 LKDVTDKRKDLKLILMSATL-NAEKFSQFFGGAPILHIPGFTYPVQEYY 244 (319)
Q Consensus 197 l~~~~~~~~~~qiv~lSAT~-~~~~l~~~l~~~~~i~~~~r~~~v~~~~ 244 (319)
+..+ ++.|+|+||||+ |.+++++|++ .+.+..++|++|++.++
T Consensus 170 ~~~~----~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~r~~~l~~~~ 213 (715)
T 2va8_A 170 TIRA----KRRNLLALSATISNYKQIAKWLG-AEPVATNWRPVPLIEGV 213 (715)
T ss_dssp HHHH----HTSEEEEEESCCTTHHHHHHHHT-CEEEECCCCSSCEEEEE
T ss_pred HHhc----ccCcEEEEcCCCCCHHHHHHHhC-CCccCCCCCCCCceEEE
Confidence 3222 267999999999 8999999996 56788888988887654
No 8
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=99.93 E-value=2.7e-26 Score=220.55 Aligned_cols=254 Identities=17% Similarity=0.162 Sum_probs=153.4
Q ss_pred cchhhhhhhhcccCCCcccccc------------ccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEE
Q psy496 6 AQSITYRLKEDLAGCGKTTQVP------------QFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSI 73 (319)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vl 73 (319)
..+++|+.+.+++..-....+| +.+.+......+ ..++|+|.++||.+++| ++++
T Consensus 31 ~~~~~~~~~~~~~~~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g~---~~pt~iQ~~ai~~i~~g----------~d~i 97 (434)
T 2db3_A 31 ASGIHFSKYNNIPVKVTGSDVPQPIQHFTSADLRDIIIDNVNKSGY---KIPTPIQKCSIPVISSG----------RDLM 97 (434)
T ss_dssp CCCTTGGGGGGSCEEEESSSCCCCCCCGGGSCCCHHHHHHHHHTTC---CSCCHHHHHHHHHHHTT----------CCEE
T ss_pred ccccChhhhcCceeEecCCCCCCCcCChhhcCCCHHHHHHHHHcCC---CCCCHHHHHHHHHHhcC----------CCEE
Confidence 5678999887765322222222 222222222222 23679999999998754 5688
Q ss_pred EecCCCCCccchhhHHHHHHHHHhCC---CCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEec-----cc
Q psy496 74 IYTSTGCGKTTQVPQFILDDEIARNR---GSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRL-----EK 145 (319)
Q Consensus 74 i~apTGSGKT~~~~l~il~~l~~~~~---~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~-----~~ 145 (319)
++||||||||++|++|+++.+..... ....++++++|||+||.|+++.+.++.... +..++..... ..
T Consensus 98 ~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~----~~~~~~~~gg~~~~~~~ 173 (434)
T 2db3_A 98 ACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFES----YLKIGIVYGGTSFRHQN 173 (434)
T ss_dssp EECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTS----SCCCCEECTTSCHHHHH
T ss_pred EECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccC----CcEEEEEECCCCHHHHH
Confidence 88889999999999999998876432 224578888899999999999888775432 1222211111 11
Q ss_pred ccCCCCceEEEECchHHHHHHhcC-CCCCCccEEEEecccccccchhHHHHHHHhhhc--cccCceEEEecccc--Chhh
Q psy496 146 ELPRKRGSILYCTAGILPEVMQSD-PILSGVSHIVMDEIHERSMISDFLLAILKDVTD--KRKDLKLILMSATL--NAEK 220 (319)
Q Consensus 146 ~~~~~~~~Iiv~Tpg~ll~~l~~~-~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~--~~~~~qiv~lSAT~--~~~~ 220 (319)
.....+++|+|+|||+|++++... ..+++++++|+||||+. ...++.....+.+.. .+++.|+++||||+ +.+.
T Consensus 174 ~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~-~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~~~ 252 (434)
T 2db3_A 174 ECITRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRM-LDMGFSEDMRRIMTHVTMRPEHQTLMFSATFPEEIQR 252 (434)
T ss_dssp HHHTTCCSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHH-TSTTTHHHHHHHHHCTTSCSSCEEEEEESCCCHHHHH
T ss_pred HHhhcCCCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhh-hccCcHHHHHHHHHhcCCCCCceEEEEeccCCHHHHH
Confidence 111245789999999999999554 45899999999999973 333333333333332 35678999999999 3444
Q ss_pred Hhh-hhCCCCEEEeCCc---cccceeeeehhhhhhhhhhHHHHHHHHhhhhhhhccccCCCcEEEeCCcccc
Q psy496 221 FSQ-FFGGAPILHIPGF---TYPVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYP 288 (319)
Q Consensus 221 l~~-~l~~~~~i~~~~r---~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~ 288 (319)
+++ |+.+...+.+... ...+...+.... .......+... +... ++.+|||++++..+
T Consensus 253 ~~~~~l~~~~~i~~~~~~~~~~~i~~~~~~~~----~~~k~~~l~~~------l~~~-~~~~lVF~~t~~~a 313 (434)
T 2db3_A 253 MAGEFLKNYVFVAIGIVGGACSDVKQTIYEVN----KYAKRSKLIEI------LSEQ-ADGTIVFVETKRGA 313 (434)
T ss_dssp HHHTTCSSCEEEEESSTTCCCTTEEEEEEECC----GGGHHHHHHHH------HHHC-CTTEEEECSSHHHH
T ss_pred HHHHhccCCEEEEeccccccccccceEEEEeC----cHHHHHHHHHH------HHhC-CCCEEEEEeCcHHH
Confidence 544 5554434444321 122333332211 11112222211 1111 34599999998765
No 9
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=99.92 E-value=1.4e-24 Score=205.40 Aligned_cols=239 Identities=14% Similarity=0.095 Sum_probs=147.1
Q ss_pred cccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccE
Q psy496 25 QVPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECC 104 (319)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~ 104 (319)
++++.+.+...+..+. .++++|.+++|.+..+ .+++++++||||||||++|++|+++.+..... ..+
T Consensus 31 ~l~~~l~~~l~~~g~~---~~~~~Q~~~i~~~~~~--------~~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~--~~~ 97 (412)
T 3fht_A 31 RLKPQLLQGVYAMGFN---RPSKIQENALPLMLAE--------PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK--YPQ 97 (412)
T ss_dssp TCCHHHHHHHHHTTCC---SCCHHHHHHHHHHHSS--------SCCCEEEECCTTSCHHHHHHHHHHHHCCTTSC--SCC
T ss_pred CCCHHHHHHHHHcCCC---CCCHHHHHHHHHHhcC--------CCCeEEEECCCCchHHHHHHHHHHHHhhhcCC--CCC
Confidence 3444444443333222 3568899999998753 45789999999999999999999987754433 336
Q ss_pred EEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccccc--CCCCceEEEECchHHHHHHhcC--CCCCCccEEEE
Q psy496 105 IMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKEL--PRKRGSILYCTAGILPEVMQSD--PILSGVSHIVM 180 (319)
Q Consensus 105 vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~--~~~~~~Iiv~Tpg~ll~~l~~~--~~l~~v~~vVi 180 (319)
+++++|+++|+.|+++.+.++..... +..++......... .....+|+|+||+++.+++... ..+.++++||+
T Consensus 98 ~lil~P~~~L~~q~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iVi 174 (412)
T 3fht_A 98 CLCLSPTYELALQTGKVIEQMGKFYP---ELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVL 174 (412)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTST---TCCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEE
T ss_pred EEEECCCHHHHHHHHHHHHHHHhhcc---cceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEE
Confidence 77778999999999998887754332 44455444322211 1234689999999999998553 34789999999
Q ss_pred ecccccccchhHHHHHHHhhhccccCceEEEeccccC--hhhHhh-hhCCCCEEEeCCccc---cceeeeehhhhhhhhh
Q psy496 181 DEIHERSMISDFLLAILKDVTDKRKDLKLILMSATLN--AEKFSQ-FFGGAPILHIPGFTY---PVQEYYLEDVLNMTRK 254 (319)
Q Consensus 181 DEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~~--~~~l~~-~l~~~~~i~~~~r~~---~v~~~~~~~~~~~~~~ 254 (319)
||+|.......+...........+++.|++++|||++ ...+.. ++.+...+.+..... .+...+.... ..
T Consensus 175 DEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 250 (412)
T 3fht_A 175 DEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCS----SR 250 (412)
T ss_dssp ETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEEECCCGGGSSCTTEEEEEEECS----SH
T ss_pred eCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCCeEEeeccccccccCceEEEEEcC----Ch
Confidence 9999732212222233333334556789999999993 334444 454444444433222 2223332221 11
Q ss_pred hHHHHHHHHhhhhhhhccccCCCcEEEeCCcccc
Q psy496 255 DLKLILMSATLNAEKFSQFFGGAPILHIPGFTYP 288 (319)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~ 288 (319)
..+....... +....++++|||++++..+
T Consensus 251 ~~~~~~l~~~-----~~~~~~~~~lvf~~~~~~~ 279 (412)
T 3fht_A 251 DEKFQALCNL-----YGAITIAQAMIFCHTRKTA 279 (412)
T ss_dssp HHHHHHHHHH-----HHHHSSSEEEEECSSHHHH
T ss_pred HHHHHHHHHH-----HhhcCCCCEEEEeCCHHHH
Confidence 1111111111 1112367899999998765
No 10
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=99.91 E-value=5.2e-25 Score=224.14 Aligned_cols=234 Identities=15% Similarity=0.101 Sum_probs=152.5
Q ss_pred cccccccchHHHhccCCccccccccccchhh-HHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCcc
Q psy496 25 QVPQFILDDEIARNRGSECCIMVTQPRRISA-IALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSEC 103 (319)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~-~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~ 103 (319)
++|+.+.+ ++..... .++.++|.++++. +. .+++++++||||||||+++++++++.+...+ .
T Consensus 7 ~l~~~~~~-~l~~~g~--~~l~~~Q~~~i~~~~~----------~~~~~lv~apTGsGKT~~~~l~il~~~~~~~----~ 69 (720)
T 2zj8_A 7 RVDERIKS-TLKERGI--ESFYPPQAEALKSGIL----------EGKNALISIPTASGKTLIAEIAMVHRILTQG----G 69 (720)
T ss_dssp CSCHHHHH-HHHHTTC--CBCCHHHHHHHTTTGG----------GTCEEEEECCGGGCHHHHHHHHHHHHHHHHC----S
T ss_pred CCCHHHHH-HHHHCCC--CCCCHHHHHHHHHHhc----------CCCcEEEEcCCccHHHHHHHHHHHHHHHhCC----C
Confidence 45655543 3333211 1356889999887 43 2578999999999999999999998876443 4
Q ss_pred EEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccccc--CCCCceEEEECchHHHHHHhcCCC-CCCccEEEE
Q psy496 104 CIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKEL--PRKRGSILYCTAGILPEVMQSDPI-LSGVSHIVM 180 (319)
Q Consensus 104 ~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~--~~~~~~Iiv~Tpg~ll~~l~~~~~-l~~v~~vVi 180 (319)
++++++|+|+||.|+++++.++ ... |..++......... ...+++|+|+|||++..++..++. ++++++||+
T Consensus 70 ~~l~i~P~raLa~q~~~~~~~l-~~~----g~~v~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIi 144 (720)
T 2zj8_A 70 KAVYIVPLKALAEEKFQEFQDW-EKI----GLRVAMATGDYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVA 144 (720)
T ss_dssp EEEEECSSGGGHHHHHHHTGGG-GGG----TCCEEEECSCSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEE
T ss_pred EEEEEcCcHHHHHHHHHHHHHH-Hhc----CCEEEEecCCCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEE
Confidence 8999999999999999998533 211 44444322211100 012578999999999998866655 899999999
Q ss_pred ecccc-----cccchhHHHHHHHhhhccccCceEEEecccc-ChhhHhhhhCCCCEEEeCCccccceeeeehhh-hhhhh
Q psy496 181 DEIHE-----RSMISDFLLAILKDVTDKRKDLKLILMSATL-NAEKFSQFFGGAPILHIPGFTYPVQEYYLEDV-LNMTR 253 (319)
Q Consensus 181 DEah~-----~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~-~~~~l~~~l~~~~~i~~~~r~~~v~~~~~~~~-~~~~~ 253 (319)
||+|. |+...+.++..++ ++.|+|++|||+ |.+++++|++ .+.+..+.|+.|++..+.... .....
T Consensus 145 DE~H~l~~~~r~~~~~~ll~~l~------~~~~ii~lSATl~n~~~~~~~l~-~~~~~~~~rp~~l~~~~~~~~~~~~~~ 217 (720)
T 2zj8_A 145 DEIHLIGSRDRGATLEVILAHML------GKAQIIGLSATIGNPEELAEWLN-AELIVSDWRPVKLRRGVFYQGFVTWED 217 (720)
T ss_dssp ETGGGGGCTTTHHHHHHHHHHHB------TTBEEEEEECCCSCHHHHHHHTT-EEEEECCCCSSEEEEEEEETTEEEETT
T ss_pred ECCcccCCCcccHHHHHHHHHhh------cCCeEEEEcCCcCCHHHHHHHhC-CcccCCCCCCCcceEEEEeCCeeeccc
Confidence 99995 3333333333333 267999999999 8999999996 456777888888776543211 00000
Q ss_pred h--hHHHHHHHHhhhhhhhccccCCCcEEEeCCccccccc
Q psy496 254 K--DLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQE 291 (319)
Q Consensus 254 ~--~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~v~~ 291 (319)
. ...........+. .. .++++|||+++|..+.++
T Consensus 218 ~~~~~~~~~~~~~~~~--~~--~~~~~LVF~~sr~~~~~~ 253 (720)
T 2zj8_A 218 GSIDRFSSWEELVYDA--IR--KKKGALIFVNMRRKAERV 253 (720)
T ss_dssp SCEEECSSTTHHHHHH--HH--TTCCEEEECSCHHHHHHH
T ss_pred cchhhhhHHHHHHHHH--Hh--CCCCEEEEecCHHHHHHH
Confidence 0 0000000111111 11 278999999999887544
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=99.91 E-value=7.7e-25 Score=212.50 Aligned_cols=225 Identities=14% Similarity=0.097 Sum_probs=123.0
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
++++|.+++|.++.+ .+++++++||||||||++|++|+++.+..... ..++++++|+++||.|+++.+.+
T Consensus 115 p~~~Q~~ai~~il~~--------~~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~--~~~~lil~Pt~~La~Q~~~~~~~ 184 (479)
T 3fmp_B 115 PSKIQENALPLMLAE--------PPQNLIAQSQSGTGKTAAFVLAMLSQVEPANK--YPQCLCLSPTYELALQTGKVIEQ 184 (479)
T ss_dssp CCHHHHHHHHHHTSB--------SCCEEEEECCSSSSHHHHHHHHHHTTCCTTSC--SCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcC--------CCCcEEEEcCCCCchhHHHHHHHHHHHhhcCC--CCcEEEEeChHHHHHHHHHHHHH
Confidence 568899999998653 35789999999999999999999987755433 23677777999999999988887
Q ss_pred HhccccCCCCceEEEEEeccccc--CCCCceEEEECchHHHHHHhcCC--CCCCccEEEEecccccccchhHHHHHHHhh
Q psy496 125 ERDEQCGRPGSSVGYQIRLEKEL--PRKRGSILYCTAGILPEVMQSDP--ILSGVSHIVMDEIHERSMISDFLLAILKDV 200 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~~~--~~~~~~Iiv~Tpg~ll~~l~~~~--~l~~v~~vViDEah~~~~~~~~~~~~l~~~ 200 (319)
+..... +..+++........ .....+|+|+|||++++++.... .+.++++||+||+|.......+........
T Consensus 185 ~~~~~~---~~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~ 261 (479)
T 3fmp_B 185 MGKFYP---ELKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQ 261 (479)
T ss_dssp HHTTST---TCCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHH
T ss_pred HHhhCC---CceEEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHH
Confidence 754332 34444433322211 12346799999999999995533 468999999999997322223443444444
Q ss_pred hccccCceEEEeccccC--hhhHhh-hhCCCCEEEeCCcccc---ceeeeehhhhhhhhhhHHHHHHHHhhhhhhhcccc
Q psy496 201 TDKRKDLKLILMSATLN--AEKFSQ-FFGGAPILHIPGFTYP---VQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFF 274 (319)
Q Consensus 201 ~~~~~~~qiv~lSAT~~--~~~l~~-~l~~~~~i~~~~r~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (319)
...+++.|++++|||++ ...++. ++.+...+.+...... +...+.... ....+...+ ... +....
T Consensus 262 ~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l---~~~--~~~~~ 332 (479)
T 3fmp_B 262 RMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEETLDTIKQYYVLCS----SRDEKFQAL---CNL--YGAIT 332 (479)
T ss_dssp TTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEEEEEC-------------------------------------------
T ss_pred hhCCccceEEEEeCCCCHHHHHHHHHHcCCCeEEeccccccCcCCceEEEEEeC----CHHHHHHHH---HHH--Hhhcc
Confidence 44566889999999993 334554 4444444444332211 112221111 011111111 111 11223
Q ss_pred CCCcEEEeCCccccccc
Q psy496 275 GGAPILHIPGFTYPVQE 291 (319)
Q Consensus 275 ~g~~LVFlp~R~~~v~~ 291 (319)
.+++||||+++..+.++
T Consensus 333 ~~~~lvF~~s~~~~~~l 349 (479)
T 3fmp_B 333 IAQAMIFCHTRKTASWL 349 (479)
T ss_dssp -----------------
T ss_pred CCceEEEeCcHHHHHHH
Confidence 67899999999876444
No 12
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.91 E-value=5.9e-25 Score=192.84 Aligned_cols=169 Identities=20% Similarity=0.155 Sum_probs=114.0
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHh----CCCCccEEEEecccHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIAR----NRGSECCIMVTQPRRISAIAIAE 120 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~----~~~~~~~vl~~~Ptr~la~q~~~ 120 (319)
++++|.+++|.+.+| ++++++||||||||++|.+|++..+... ......+++++.||++||.|+.+
T Consensus 43 ~~~~Q~~~i~~~~~~----------~~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~ 112 (228)
T 3iuy_A 43 PTPIQSQAWPIILQG----------IDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEA 112 (228)
T ss_dssp CCHHHHHHHHHHHTT----------CCEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC----------CCEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHH
Confidence 568899999988753 5688999999999999999999876432 11224567888899999999999
Q ss_pred HHHHHhccccCCCCceEEEEEeccc-----ccCCCCceEEEECchHHHHHHhcCC-CCCCccEEEEecccccccchhHHH
Q psy496 121 RVAQERDEQCGRPGSSVGYQIRLEK-----ELPRKRGSILYCTAGILPEVMQSDP-ILSGVSHIVMDEIHERSMISDFLL 194 (319)
Q Consensus 121 ~~~~~~~~~~~~~g~~vg~~~~~~~-----~~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vViDEah~~~~~~~~~~ 194 (319)
++.+.... +..+........ .....+.+|+|+|||++.+.+..+. .+++++++|+||||.. ...++..
T Consensus 113 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~-~~~~~~~ 186 (228)
T 3iuy_A 113 ECSKYSYK-----GLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKM-LDMEFEP 186 (228)
T ss_dssp HHHHHCCT-----TCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHH-HHTTCHH
T ss_pred HHHHhccc-----CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHH-hccchHH
Confidence 88886421 222221111111 0111346899999999999885544 4899999999999962 2222333
Q ss_pred HHHHhhhccccCceEEEecccc--ChhhHhhhhCCCC
Q psy496 195 AILKDVTDKRKDLKLILMSATL--NAEKFSQFFGGAP 229 (319)
Q Consensus 195 ~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~l~~~~ 229 (319)
...+.+...+++.|++++|||+ +.+.+.+.+.+.|
T Consensus 187 ~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p 223 (228)
T 3iuy_A 187 QIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDP 223 (228)
T ss_dssp HHHHHHHHSCSSCEEEEEESCCCHHHHHHHHTTCSSC
T ss_pred HHHHHHHhCCcCCeEEEEEeeCCHHHHHHHHHHCCCC
Confidence 3334444456688999999999 3455555433333
No 13
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.4e-24 Score=226.17 Aligned_cols=177 Identities=18% Similarity=0.177 Sum_probs=133.0
Q ss_pred cccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHH
Q psy496 43 CCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 43 ~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
.+++++|.++|+.+. .+++++++||||||||++|.+|++..+... .++++++|+|+|+.|+++.+
T Consensus 183 f~ltp~Q~~AI~~i~----------~g~dvLV~ApTGSGKTlva~l~i~~~l~~g-----~rvlvl~PtraLa~Q~~~~l 247 (1108)
T 3l9o_A 183 FTLDPFQDTAISCID----------RGESVLVSAHTSAGKTVVAEYAIAQSLKNK-----QRVIYTSPIKALSNQKYREL 247 (1108)
T ss_dssp SCCCHHHHHHHHHHT----------TTCCEEEECCSSSHHHHHHHHHHHHHHHTT-----CEEEEEESSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH----------cCCCEEEECCCCCChHHHHHHHHHHHHhcC-----CeEEEEcCcHHHHHHHHHHH
Confidence 345688888888764 457799999999999999999999887443 37888889999999999999
Q ss_pred HHHhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCC-CCCccEEEEecccccccchhHHHHHHHhhh
Q psy496 123 AQERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPI-LSGVSHIVMDEIHERSMISDFLLAILKDVT 201 (319)
Q Consensus 123 ~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~-l~~v~~vViDEah~~~~~~~~~~~~l~~~~ 201 (319)
.+.++ .+|. ..++.....+++|+|+|||+|.+++..... +.++++|||||||.. ...++...+...+.
T Consensus 248 ~~~~~--------~Vgl--ltGd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l-~d~~rg~~~e~ii~ 316 (1108)
T 3l9o_A 248 LAEFG--------DVGL--MTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYM-RDKERGVVWEETII 316 (1108)
T ss_dssp HHHTS--------SEEE--ECSSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGT-TSHHHHHHHHHHHH
T ss_pred HHHhC--------CccE--EeCccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhc-cccchHHHHHHHHH
Confidence 98865 2332 222222335678999999999999966554 889999999999963 23333333333444
Q ss_pred ccccCceEEEecccc-ChhhHhhhhCC-----CCEEEeCCccccceeeee
Q psy496 202 DKRKDLKLILMSATL-NAEKFSQFFGG-----APILHIPGFTYPVQEYYL 245 (319)
Q Consensus 202 ~~~~~~qiv~lSAT~-~~~~l~~~l~~-----~~~i~~~~r~~~v~~~~~ 245 (319)
.++++.|+|+||||+ +...+++|++. ..++..+.++.|++.++.
T Consensus 317 ~l~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~ 366 (1108)
T 3l9o_A 317 LLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLF 366 (1108)
T ss_dssp HSCTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEE
T ss_pred hcCCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEe
Confidence 566789999999999 88888888752 445677788888876553
No 14
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.91 E-value=1.4e-24 Score=192.54 Aligned_cols=174 Identities=18% Similarity=0.088 Sum_probs=119.2
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhC---CCCccEEEEecccHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARN---RGSECCIMVTQPRRISAIAIAER 121 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~---~~~~~~vl~~~Ptr~la~q~~~~ 121 (319)
++++|.++||.+..| ++++++||||||||++|.+|++..+.... .....++++++|||+|+.|+.+.
T Consensus 52 ~~~~Q~~~i~~~~~g----------~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~ 121 (242)
T 3fe2_A 52 PTAIQAQGWPVALSG----------LDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQV 121 (242)
T ss_dssp CCHHHHHHHHHHHHT----------CCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC----------CCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHH
Confidence 578999999998864 46888999999999999999998876432 12244678888999999999988
Q ss_pred HHHHhccccCCCCceEEEEEecccc-----cCCCCceEEEECchHHHHHHhcCC-CCCCccEEEEecccccccchhHHHH
Q psy496 122 VAQERDEQCGRPGSSVGYQIRLEKE-----LPRKRGSILYCTAGILPEVMQSDP-ILSGVSHIVMDEIHERSMISDFLLA 195 (319)
Q Consensus 122 ~~~~~~~~~~~~g~~vg~~~~~~~~-----~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vViDEah~~~~~~~~~~~ 195 (319)
+.+..... +..++........ ....+++|+|+|||++.+.+.... .+++++++|+||||.. ...++...
T Consensus 122 ~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l-~~~~~~~~ 196 (242)
T 3fe2_A 122 AAEYCRAC----RLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRM-LDMGFEPQ 196 (242)
T ss_dssp HHHHHHHT----TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHH-HHTTCHHH
T ss_pred HHHHHhhc----CceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHH-hhhCcHHH
Confidence 87764332 2233221111110 001246799999999999995444 5899999999999962 22233333
Q ss_pred HHHhhhccccCceEEEecccc--ChhhHhhh-hCCCCEEEe
Q psy496 196 ILKDVTDKRKDLKLILMSATL--NAEKFSQF-FGGAPILHI 233 (319)
Q Consensus 196 ~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~-l~~~~~i~~ 233 (319)
....+...+++.|+++||||+ +.+.+.+. +.+...+.+
T Consensus 197 ~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~l~~~~~i~~ 237 (242)
T 3fe2_A 197 IRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKDYIHINI 237 (242)
T ss_dssp HHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEEEE
T ss_pred HHHHHHhCCccceEEEEEeecCHHHHHHHHHHCCCCEEEEe
Confidence 344444556788999999999 45556654 444333444
No 15
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=99.91 E-value=4.4e-24 Score=200.42 Aligned_cols=238 Identities=15% Similarity=0.121 Sum_probs=147.7
Q ss_pred cccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccE
Q psy496 25 QVPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECC 104 (319)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~ 104 (319)
++++.+.+...+..+. .++++|.++++.+..+ .+++++++||||||||+++++|+++.+..... ..+
T Consensus 11 ~l~~~l~~~l~~~~~~---~~~~~Q~~~i~~~~~~--------~~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~--~~~ 77 (395)
T 3pey_A 11 GLAPELLKGIYAMKFQ---KPSKIQERALPLLLHN--------PPRNMIAQSQSGTGKTAAFSLTMLTRVNPEDA--SPQ 77 (395)
T ss_dssp CCCHHHHHHHHHTTCC---SCCHHHHHHHHHHHCS--------SCCCEEEECCTTSCHHHHHHHHHHHHCCTTCC--SCC
T ss_pred CCCHHHHHHHHHCCCC---CCCHHHHHHHHHHHcC--------CCCeEEEECCCCCcHHHHHHHHHHHHhccCCC--Ccc
Confidence 4555555554443332 3568899999988653 34789999999999999999999987654332 346
Q ss_pred EEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecc-cccCCCCceEEEECchHHHHHHhcCC-CCCCccEEEEec
Q psy496 105 IMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLE-KELPRKRGSILYCTAGILPEVMQSDP-ILSGVSHIVMDE 182 (319)
Q Consensus 105 vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~-~~~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vViDE 182 (319)
+++++|+++|+.|+++.+.+..... +..++...... ......+++|+|+||+++.+.+.... .+.++++||+||
T Consensus 78 ~lil~P~~~L~~q~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDE 153 (395)
T 3pey_A 78 AICLAPSRELARQTLEVVQEMGKFT----KITSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDE 153 (395)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS----CCCEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEET
T ss_pred EEEECCCHHHHHHHHHHHHHHhccc----CeeEEEEecCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEC
Confidence 7888899999999999888764322 32333222111 11112357899999999999985544 488999999999
Q ss_pred ccccccchhHHHHHHHhhhccccCceEEEeccccC--hhhHhhhh-CCCCEEEeCCcccc---ceeeeehhhhhhhhhhH
Q psy496 183 IHERSMISDFLLAILKDVTDKRKDLKLILMSATLN--AEKFSQFF-GGAPILHIPGFTYP---VQEYYLEDVLNMTRKDL 256 (319)
Q Consensus 183 ah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~~--~~~l~~~l-~~~~~i~~~~r~~~---v~~~~~~~~~~~~~~~~ 256 (319)
+|......++...........+++.|++++|||++ ...+...+ .+...+........ +...+.... ....
T Consensus 154 ah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 229 (395)
T 3pey_A 154 ADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTNEVNVDAIKQLYMDCK----NEAD 229 (395)
T ss_dssp HHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEECCCGGGCSCTTEEEEEEECS----SHHH
T ss_pred hhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEEEccccccccccccEEEEEcC----chHH
Confidence 99743223344444444444556789999999993 34555444 34333443333222 222232221 1111
Q ss_pred HHHHHHHhhhhhhhccccCCCcEEEeCCcccc
Q psy496 257 KLILMSATLNAEKFSQFFGGAPILHIPGFTYP 288 (319)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~ 288 (319)
+....... .....++++|||++++..+
T Consensus 230 ~~~~l~~~-----~~~~~~~~~lvf~~~~~~~ 256 (395)
T 3pey_A 230 KFDVLTEL-----YGLMTIGSSIIFVATKKTA 256 (395)
T ss_dssp HHHHHHHH-----HTTTTSSEEEEECSCHHHH
T ss_pred HHHHHHHH-----HHhccCCCEEEEeCCHHHH
Confidence 11111111 1112367899999998765
No 16
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=99.91 E-value=3.4e-24 Score=203.34 Aligned_cols=235 Identities=16% Similarity=0.112 Sum_probs=139.3
Q ss_pred ccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCC-----
Q psy496 26 VPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRG----- 100 (319)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~----- 100 (319)
+++.+.+......+. .++++|.++||.+.. +++++++||||||||++|.+|+++.+......
T Consensus 22 l~~~l~~~l~~~~~~---~~~~~Q~~~i~~i~~----------~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~ 88 (417)
T 2i4i_A 22 MGEIIMGNIELTRYT---RPTPVQKHAIPIIKE----------KRDLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRA 88 (417)
T ss_dssp CCHHHHHHHHHHTCC---SCCHHHHHHHHHHHT----------TCCEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred CCHHHHHHHHHCCCC---CCCHHHHHHHHHHcc----------CCCEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhc
Confidence 444444443333332 357889999998764 35688999999999999999999887654321
Q ss_pred -----------CccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc-----ccCCCCceEEEECchHHHH
Q psy496 101 -----------SECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK-----ELPRKRGSILYCTAGILPE 164 (319)
Q Consensus 101 -----------~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~-----~~~~~~~~Iiv~Tpg~ll~ 164 (319)
...++++++|||+|+.|+++.+.+..... +..++....... .....+++|+|+||++|.+
T Consensus 89 ~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~ 164 (417)
T 2i4i_A 89 MKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS----RVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVD 164 (417)
T ss_dssp HHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTS----SCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHH
T ss_pred cccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcC----CceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHH
Confidence 12468888899999999999988765432 223322111111 0112356899999999999
Q ss_pred HHhcCC-CCCCccEEEEecccccccchhHHHHHHHhhhc---cc--cCceEEEecccc--ChhhHhh-hhCCCCEEEeCC
Q psy496 165 VMQSDP-ILSGVSHIVMDEIHERSMISDFLLAILKDVTD---KR--KDLKLILMSATL--NAEKFSQ-FFGGAPILHIPG 235 (319)
Q Consensus 165 ~l~~~~-~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~---~~--~~~qiv~lSAT~--~~~~l~~-~l~~~~~i~~~~ 235 (319)
++.... .++++++||+||+|.. ...++.. .++.+.. .+ ...|++++|||+ +.+.+.. |+.+...+.+..
T Consensus 165 ~l~~~~~~~~~~~~iViDEah~~-~~~~~~~-~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~ 242 (417)
T 2i4i_A 165 MMERGKIGLDFCKYLVLDEADRM-LDMGFEP-QIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDFLDEYIFLAVGR 242 (417)
T ss_dssp HHHTTSBCCTTCCEEEESSHHHH-HHTTCHH-HHHHHHTSSSCCCBTTBEEEEEESCCCHHHHHHHHHHCSSCEEEEEC-
T ss_pred HHHcCCcChhhCcEEEEEChhHh-hccCcHH-HHHHHHHhccCCCcCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEeCC
Confidence 996544 4889999999999972 1111222 2222221 22 267899999999 3344444 454433333322
Q ss_pred cc---ccceeeeehhhhhhhhhhHHHHHHHHhhhhhhhccccCCCcEEEeCCcccc
Q psy496 236 FT---YPVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYP 288 (319)
Q Consensus 236 r~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~ 288 (319)
.. ..+...+.... .......+... +.. ...++++|||++++..+
T Consensus 243 ~~~~~~~i~~~~~~~~----~~~~~~~l~~~-l~~----~~~~~~~lVf~~~~~~~ 289 (417)
T 2i4i_A 243 VGSTSENITQKVVWVE----ESDKRSFLLDL-LNA----TGKDSLTLVFVETKKGA 289 (417)
T ss_dssp ---CCSSEEEEEEECC----GGGHHHHHHHH-HHT----CCTTCEEEEECSSHHHH
T ss_pred CCCCccCceEEEEEec----cHhHHHHHHHH-HHh----cCCCCeEEEEECCHHHH
Confidence 11 12222232211 11111222111 111 11367899999998765
No 17
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.91 E-value=2.4e-24 Score=188.20 Aligned_cols=192 Identities=18% Similarity=0.125 Sum_probs=123.0
Q ss_pred cccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccE
Q psy496 25 QVPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECC 104 (319)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~ 104 (319)
.+++.+.+...+..+. .+++.|.++++.+..| ++++++||||||||.+|.+|+++.+..... ..+
T Consensus 20 ~l~~~l~~~l~~~g~~---~~~~~Q~~~i~~~~~~----------~~~lv~~pTGsGKT~~~~~~~l~~l~~~~~--~~~ 84 (224)
T 1qde_A 20 ELDENLLRGVFGYGFE---EPSAIQQRAIMPIIEG----------HDVLAQAQSGTGKTGTFSIAALQRIDTSVK--APQ 84 (224)
T ss_dssp TCCHHHHHHHHHHTCC---SCCHHHHHHHHHHHTT----------CCEEEECCTTSSHHHHHHHHHHHHCCTTCC--SCC
T ss_pred CCCHHHHHHHHHCCCC---CCcHHHHHHHHHHhcC----------CCEEEECCCCCcHHHHHHHHHHHHHhccCC--Cce
Confidence 3455555444333322 2568899999987653 568999999999999999999987754332 347
Q ss_pred EEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEe----cccccCCCCceEEEECchHHHHHHhcC-CCCCCccEEE
Q psy496 105 IMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIR----LEKELPRKRGSILYCTAGILPEVMQSD-PILSGVSHIV 179 (319)
Q Consensus 105 vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~----~~~~~~~~~~~Iiv~Tpg~ll~~l~~~-~~l~~v~~vV 179 (319)
+++++|+++|+.|+.+.+.+..... +..++.... .+......+++|+|+||+++.+.+... ..+++++++|
T Consensus 85 ~lil~Pt~~L~~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iV 160 (224)
T 1qde_A 85 ALMLAPTRELALQIQKVVMALAFHM----DIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFI 160 (224)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS----CCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred EEEEECCHHHHHHHHHHHHHHhccc----CceEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 7888899999999999888765432 222221111 111111124789999999999988554 3488999999
Q ss_pred EecccccccchhHHHHHHHhhhccccCceEEEecccc--ChhhHhh-hhCCCCEEEeCCc
Q psy496 180 MDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL--NAEKFSQ-FFGGAPILHIPGF 236 (319)
Q Consensus 180 iDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~-~l~~~~~i~~~~r 236 (319)
+||||.. ...++...+.+.+...+++.|++++|||+ +.+.+.+ |+.++..+.++.+
T Consensus 161 iDEah~~-~~~~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~i~~~~~ 219 (224)
T 1qde_A 161 LDEADEM-LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD 219 (224)
T ss_dssp EETHHHH-HHTTCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEEEC----
T ss_pred EcChhHH-hhhhhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEEEEecCC
Confidence 9999962 12222222333333455678999999999 3445444 5655444555443
No 18
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.91 E-value=2.5e-24 Score=189.76 Aligned_cols=175 Identities=18% Similarity=0.160 Sum_probs=119.2
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCC--CCccEEEEecccHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNR--GSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~--~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
++++|.++++.+..| ++++++||||||||++|.+|+++.+..... ....++++++|+++|+.|+++.+
T Consensus 48 ~~~~Q~~~i~~~~~~----------~~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 117 (236)
T 2pl3_A 48 VTEIQKQTIGLALQG----------KDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVL 117 (236)
T ss_dssp CCHHHHHHHHHHHTT----------CCEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC----------CCEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHH
Confidence 568899999988753 568999999999999999999988765321 12347888889999999999988
Q ss_pred HHHhccccCCCCceEEEEEecc----cccCCCCceEEEECchHHHHHHhcC--CCCCCccEEEEecccccccchhHHHHH
Q psy496 123 AQERDEQCGRPGSSVGYQIRLE----KELPRKRGSILYCTAGILPEVMQSD--PILSGVSHIVMDEIHERSMISDFLLAI 196 (319)
Q Consensus 123 ~~~~~~~~~~~g~~vg~~~~~~----~~~~~~~~~Iiv~Tpg~ll~~l~~~--~~l~~v~~vViDEah~~~~~~~~~~~~ 196 (319)
.+..... +..++...... ......+++|+|+|||++.+.+... ..+.+++++|+||||.. ...++...+
T Consensus 118 ~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~-~~~~~~~~~ 192 (236)
T 2pl3_A 118 RKVGKNH----DFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRI-LDMGFADTM 192 (236)
T ss_dssp HHHTTTS----SCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHH-HHTTTHHHH
T ss_pred HHHhCCC----CeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHH-hcCCcHHHH
Confidence 8765322 22333211111 0011135689999999999988543 34789999999999962 222233333
Q ss_pred HHhhhccccCceEEEecccc--ChhhHhhhh-CCCCEEEeC
Q psy496 197 LKDVTDKRKDLKLILMSATL--NAEKFSQFF-GGAPILHIP 234 (319)
Q Consensus 197 l~~~~~~~~~~qiv~lSAT~--~~~~l~~~l-~~~~~i~~~ 234 (319)
.+.+...+++.|+++||||+ +.+.+++.+ .++..+.++
T Consensus 193 ~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~i~~~ 233 (236)
T 2pl3_A 193 NAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVH 233 (236)
T ss_dssp HHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSCEEEECC
T ss_pred HHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCCEEEEeC
Confidence 33344455678999999999 455666654 444344443
No 19
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.91 E-value=3.1e-24 Score=190.26 Aligned_cols=177 Identities=18% Similarity=0.143 Sum_probs=120.1
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
++++|.+++|.+..| ++++++||||||||++|.+|+++.+.... ....+++++.|||+|+.|+++.+.+
T Consensus 52 ~~~~Q~~~i~~~~~~----------~~~l~~a~TGsGKT~~~~l~~l~~l~~~~-~~~~~~lil~Pt~~L~~q~~~~~~~ 120 (245)
T 3dkp_A 52 PTPIQMQAIPVMLHG----------RELLASAPTGSGKTLAFSIPILMQLKQPA-NKGFRALIISPTRELASQIHRELIK 120 (245)
T ss_dssp CCHHHHHHHHHHHTT----------CCEEEECCTTSCHHHHHHHHHHHHHCSCC-SSSCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC----------CCEEEECCCCCcHHHHHHHHHHHHHhhcc-cCCceEEEEeCCHHHHHHHHHHHHH
Confidence 578999999998754 45889999999999999999998875321 2234788888999999999999988
Q ss_pred HhccccCCCCceEEEEEecc------cccCCCCceEEEECchHHHHHHhcC---CCCCCccEEEEecccccccc--hhHH
Q psy496 125 ERDEQCGRPGSSVGYQIRLE------KELPRKRGSILYCTAGILPEVMQSD---PILSGVSHIVMDEIHERSMI--SDFL 193 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~------~~~~~~~~~Iiv~Tpg~ll~~l~~~---~~l~~v~~vViDEah~~~~~--~~~~ 193 (319)
..... +..+....... ......+++|+|+|||++.+++... ..+++++++|+||||..... .++.
T Consensus 121 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~ 196 (245)
T 3dkp_A 121 ISEGT----GFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFR 196 (245)
T ss_dssp HTTTS----CCCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHH
T ss_pred Hhccc----CceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHH
Confidence 75432 22222111100 1111245789999999999999654 34889999999999973211 2344
Q ss_pred HHHHHhhhc-cccCceEEEecccc--ChhhHhhh-hCCCCEEEeCCc
Q psy496 194 LAILKDVTD-KRKDLKLILMSATL--NAEKFSQF-FGGAPILHIPGF 236 (319)
Q Consensus 194 ~~~l~~~~~-~~~~~qiv~lSAT~--~~~~l~~~-l~~~~~i~~~~r 236 (319)
..+.+.+.. .+++.|+++||||+ +.+.+.+. +.++..+.++.+
T Consensus 197 ~~~~~i~~~~~~~~~~~~~~SAT~~~~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 197 DQLASIFLACTSHKVRRAMFSATFAYDVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp HHHHHHHHHCCCTTCEEEEEESSCCHHHHHHHHHHSSSCEEEEECC-
T ss_pred HHHHHHHHhcCCCCcEEEEEeccCCHHHHHHHHHhCCCCEEEEeCCC
Confidence 444444333 23577999999999 45566654 444444555443
No 20
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.90 E-value=8.6e-24 Score=182.15 Aligned_cols=183 Identities=17% Similarity=0.149 Sum_probs=121.2
Q ss_pred cccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccE
Q psy496 25 QVPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECC 104 (319)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~ 104 (319)
.+++.+.+...+..+. ++++.|.++++.+..+ ++++++||||||||.+|.+|+++.+..... ..+
T Consensus 9 ~l~~~l~~~l~~~g~~---~~~~~Q~~~i~~~~~~----------~~~lv~apTGsGKT~~~~~~~~~~~~~~~~--~~~ 73 (206)
T 1vec_A 9 CLKRELLMGIFEMGWE---KPSPIQEESIPIALSG----------RDILARAKNGTGKSGAYLIPLLERLDLKKD--NIQ 73 (206)
T ss_dssp CCCHHHHHHHHTTTCC---SCCHHHHHHHHHHHTT----------CCEEEECCSSSTTHHHHHHHHHHHCCTTSC--SCC
T ss_pred CCCHHHHHHHHHCCCC---CCCHHHHHHHHHHccC----------CCEEEECCCCCchHHHHHHHHHHHhcccCC--Cee
Confidence 3455554443333222 3568899999988753 568999999999999999999987644332 346
Q ss_pred EEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc-----ccCCCCceEEEECchHHHHHHhcCC-CCCCccEE
Q psy496 105 IMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK-----ELPRKRGSILYCTAGILPEVMQSDP-ILSGVSHI 178 (319)
Q Consensus 105 vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~-----~~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~v 178 (319)
++++.|+++|+.|+++.+.+...... +..++....... .....+++|+|+||+++.+.+.... .+++++++
T Consensus 74 ~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~l 150 (206)
T 1vec_A 74 AMVIVPTRELALQVSQICIQVSKHMG---GAKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMI 150 (206)
T ss_dssp EEEECSCHHHHHHHHHHHHHHTTTSS---SCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEE
T ss_pred EEEEeCcHHHHHHHHHHHHHHHhhcC---CceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEE
Confidence 77788999999999998888754321 223332221111 1112457899999999999885544 58899999
Q ss_pred EEecccccccchhHHHHHHHhhhccccCceEEEecccc--ChhhHhh-hhC
Q psy496 179 VMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL--NAEKFSQ-FFG 226 (319)
Q Consensus 179 ViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~-~l~ 226 (319)
|+||+|.. ...++...+.+.+...+++.|++++|||+ +...+.+ ++.
T Consensus 151 ViDEah~~-~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~ 200 (206)
T 1vec_A 151 VLDEADKL-LSQDFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLE 200 (206)
T ss_dssp EEETHHHH-TSTTTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCS
T ss_pred EEEChHHh-HhhCcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcC
Confidence 99999972 22233332333333345578999999999 3444444 454
No 21
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.90 E-value=4.7e-24 Score=186.02 Aligned_cols=190 Identities=18% Similarity=0.128 Sum_probs=122.8
Q ss_pred cccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccE
Q psy496 25 QVPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECC 104 (319)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~ 104 (319)
.+++.+.+...+..+. +++++|.++++.+.+| ++++++||||||||.+|.+|+++.+..... ..+
T Consensus 10 ~l~~~l~~~l~~~g~~---~~~~~Q~~~i~~~~~~----------~~~lv~a~TGsGKT~~~~~~~l~~l~~~~~--~~~ 74 (219)
T 1q0u_A 10 PFQPFIIEAIKTLRFY---KPTEIQERIIPGALRG----------ESMVGQSQTGTGKTHAYLLPIMEKIKPERA--EVQ 74 (219)
T ss_dssp CCCHHHHHHHHHTTCC---SCCHHHHHHHHHHHHT----------CCEEEECCSSHHHHHHHHHHHHHHCCTTSC--SCC
T ss_pred CCCHHHHHHHHHCCCC---CCCHHHHHHHHHHhCC----------CCEEEECCCCChHHHHHHHHHHHHHHhCcC--Cce
Confidence 3455555444333222 2568899999998764 568889999999999999999987654332 346
Q ss_pred EEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc-----ccCCCCceEEEECchHHHHHHhcCC-CCCCccEE
Q psy496 105 IMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK-----ELPRKRGSILYCTAGILPEVMQSDP-ILSGVSHI 178 (319)
Q Consensus 105 vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~-----~~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~v 178 (319)
+++++||++|+.|+++.+.+.........+..++......+ .....+.+|+|+|||++.+.+.... .+++++++
T Consensus 75 ~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~l 154 (219)
T 1q0u_A 75 AVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHIL 154 (219)
T ss_dssp EEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEE
T ss_pred EEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEE
Confidence 77778999999999998887754321000122221111111 1111356899999999999885543 48899999
Q ss_pred EEecccccccchhHHHHHHHhhhccccCceEEEecccc--ChhhHhhhhCCCCE
Q psy496 179 VMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL--NAEKFSQFFGGAPI 230 (319)
Q Consensus 179 ViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~l~~~~~ 230 (319)
|+||||.. ...++...+.+.+...+++.|++++|||+ +...+.+.+.+.|.
T Consensus 155 ViDEah~~-~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~ 207 (219)
T 1q0u_A 155 VVDEADLM-LDMGFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPT 207 (219)
T ss_dssp EECSHHHH-HHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCE
T ss_pred EEcCchHH-hhhChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCe
Confidence 99999972 12222223333333455678999999999 44455554434443
No 22
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.90 E-value=9.3e-24 Score=188.28 Aligned_cols=168 Identities=23% Similarity=0.189 Sum_probs=118.3
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
++++|.++++.+..| ++++++||||||||++|.+|+++.+..... ..++++++|+|+|+.|+++.+.+
T Consensus 66 ~~~~Q~~~i~~i~~~----------~~~lv~a~TGsGKT~~~~~~il~~l~~~~~--~~~~lil~Ptr~L~~q~~~~~~~ 133 (249)
T 3ber_A 66 PTKIQIEAIPLALQG----------RDIIGLAETGSGKTGAFALPILNALLETPQ--RLFALVLTPTRELAFQISEQFEA 133 (249)
T ss_dssp CCHHHHHHHHHHHTT----------CCEEEECCTTSCHHHHHHHHHHHHHHHSCC--SSCEEEECSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC----------CCEEEEcCCCCCchhHhHHHHHHHHhcCCC--CceEEEEeCCHHHHHHHHHHHHH
Confidence 568899999988753 568999999999999999999998876543 34677778999999999998877
Q ss_pred HhccccCCCCceEEEEEecccc-----cCCCCceEEEECchHHHHHHhcC--CCCCCccEEEEecccccccchhHHHHHH
Q psy496 125 ERDEQCGRPGSSVGYQIRLEKE-----LPRKRGSILYCTAGILPEVMQSD--PILSGVSHIVMDEIHERSMISDFLLAIL 197 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~~-----~~~~~~~Iiv~Tpg~ll~~l~~~--~~l~~v~~vViDEah~~~~~~~~~~~~l 197 (319)
..... +..++........ ....+++|+|+|||++.+.+... ..+.+++++|+||||.. ...++...+.
T Consensus 134 ~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l-~~~~~~~~l~ 208 (249)
T 3ber_A 134 LGSSI----GVQSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRI-LNMDFETEVD 208 (249)
T ss_dssp HHGGG----TCCEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHH-HHTTCHHHHH
T ss_pred HhccC----CeeEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhh-hccChHHHHH
Confidence 65432 3333322211110 01135689999999999998542 35889999999999962 2333433444
Q ss_pred HhhhccccCceEEEecccc--ChhhHhhhhCCCC
Q psy496 198 KDVTDKRKDLKLILMSATL--NAEKFSQFFGGAP 229 (319)
Q Consensus 198 ~~~~~~~~~~qiv~lSAT~--~~~~l~~~l~~~~ 229 (319)
+.+...+++.|+++||||+ +.+.+.+.+...|
T Consensus 209 ~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p 242 (249)
T 3ber_A 209 KILKVIPRDRKTFLFSATMTKKVQKLQRAALKNP 242 (249)
T ss_dssp HHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSC
T ss_pred HHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCC
Confidence 4444455678999999999 4556666544444
No 23
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=99.90 E-value=1.1e-23 Score=199.53 Aligned_cols=218 Identities=18% Similarity=0.155 Sum_probs=137.9
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
++++|.++++.+.. +++++++||||||||++|++|+++.+..... ..++++++|+++|+.|+.+.+.+
T Consensus 63 ~~~~Q~~~i~~~~~----------~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~--~~~~lil~P~~~L~~q~~~~~~~ 130 (414)
T 3eiq_A 63 PSAIQQRAILPCIK----------GYDVIAQAQSGTGKTATFAISILQQIELDLK--ATQALVLAPTRELAQQIQKVVMA 130 (414)
T ss_dssp CCHHHHHHHHHHHT----------TCCEEECCCSCSSSHHHHHHHHHHHCCTTSC--SCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHhC----------CCCEEEECCCCCcccHHHHHHHHHHHhhcCC--ceeEEEEeChHHHHHHHHHHHHH
Confidence 56889999988775 3558899999999999999999987654322 34678888999999999998888
Q ss_pred HhccccCCCCceEEEEEecccc------cCCCCceEEEECchHHHHHHhcCC-CCCCccEEEEecccccccchhHHHHHH
Q psy496 125 ERDEQCGRPGSSVGYQIRLEKE------LPRKRGSILYCTAGILPEVMQSDP-ILSGVSHIVMDEIHERSMISDFLLAIL 197 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~~------~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vViDEah~~~~~~~~~~~~l 197 (319)
..... +..++........ .....++|+|+||++|.+.+..+. .+.++++||+||+|+. ...++.....
T Consensus 131 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~-~~~~~~~~~~ 205 (414)
T 3eiq_A 131 LGDYM----GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEM-LSRGFKDQIY 205 (414)
T ss_dssp HGGGS----CCCEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHH-HHTTTHHHHH
T ss_pred Hhccc----CceEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHh-hccCcHHHHH
Confidence 75432 3333322211111 111456899999999999995544 4788999999999973 2223333444
Q ss_pred HhhhccccCceEEEeccccC--hhhHh-hhhCCCCEEEeCCcccc---ceeeeehhhhhhhhhhHHHHHHHHhhhhhhhc
Q psy496 198 KDVTDKRKDLKLILMSATLN--AEKFS-QFFGGAPILHIPGFTYP---VQEYYLEDVLNMTRKDLKLILMSATLNAEKFS 271 (319)
Q Consensus 198 ~~~~~~~~~~qiv~lSAT~~--~~~l~-~~l~~~~~i~~~~r~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (319)
..+...+++.|++++|||++ ...+. .++.+...+........ +...+.... ....... .+. +. +.
T Consensus 206 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~l~----~~--~~ 276 (414)
T 3eiq_A 206 DIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKEELTLEGIRQFYINVE--REEWKLD-TLC----DL--YE 276 (414)
T ss_dssp HHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEEECCCCCCCCTTSCCEEEEECS--SSTTHHH-HHH----HH--HH
T ss_pred HHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEEEEecCCccCCCCceEEEEEeC--hHHhHHH-HHH----HH--HH
Confidence 44455667889999999993 33443 44544444444333222 223333221 1111111 111 11 11
Q ss_pred cccCCCcEEEeCCcccc
Q psy496 272 QFFGGAPILHIPGFTYP 288 (319)
Q Consensus 272 ~~~~g~~LVFlp~R~~~ 288 (319)
...++++|||++++..+
T Consensus 277 ~~~~~~~lvf~~~~~~~ 293 (414)
T 3eiq_A 277 TLTITQAVIFINTRRKV 293 (414)
T ss_dssp SSCCSSCEEECSCHHHH
T ss_pred hCCCCcEEEEeCCHHHH
Confidence 22367999999998655
No 24
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=99.90 E-value=3.8e-23 Score=216.42 Aligned_cols=177 Identities=18% Similarity=0.195 Sum_probs=129.2
Q ss_pred ccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHH
Q psy496 42 ECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAER 121 (319)
Q Consensus 42 ~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~ 121 (319)
+.++.++|.++++.+.. +++++++||||||||+++.++++..+..+ .++++++|+++|+.|.++.
T Consensus 84 ~f~L~~~Q~eai~~l~~----------g~~vLV~apTGSGKTlva~lai~~~l~~g-----~rvL~l~PtkaLa~Q~~~~ 148 (1010)
T 2xgj_A 84 PFTLDPFQDTAISCIDR----------GESVLVSAHTSAGKTVVAEYAIAQSLKNK-----QRVIYTSPIKALSNQKYRE 148 (1010)
T ss_dssp SSCCCHHHHHHHHHHHH----------TCEEEEECCTTSCHHHHHHHHHHHHHHTT-----CEEEEEESSHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHc----------CCCEEEECCCCCChHHHHHHHHHHHhccC-----CeEEEECChHHHHHHHHHH
Confidence 34467889999988765 35689999999999999999998876432 3788888999999999999
Q ss_pred HHHHhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhc-CCCCCCccEEEEecccccccc-hhHHHHHHHh
Q psy496 122 VAQERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQS-DPILSGVSHIVMDEIHERSMI-SDFLLAILKD 199 (319)
Q Consensus 122 ~~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~-~~~l~~v~~vViDEah~~~~~-~~~~~~~l~~ 199 (319)
+.+.++ .+|. ..++.......+|+|+||++|.+++.. ...+.++++|||||+|..+-. .+.. .-..
T Consensus 149 l~~~~~--------~vgl--ltGd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~~rg~~--~e~i 216 (1010)
T 2xgj_A 149 LLAEFG--------DVGL--MTGDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDKERGVV--WEET 216 (1010)
T ss_dssp HHHHHS--------CEEE--ECSSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCTTTHHH--HHHH
T ss_pred HHHHhC--------CEEE--EeCCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcccchhHH--HHHH
Confidence 998875 2221 112222234578999999999988844 455899999999999973211 1111 1122
Q ss_pred hhccccCceEEEecccc-ChhhHhhhhC-----CCCEEEeCCccccceeeee
Q psy496 200 VTDKRKDLKLILMSATL-NAEKFSQFFG-----GAPILHIPGFTYPVQEYYL 245 (319)
Q Consensus 200 ~~~~~~~~qiv~lSAT~-~~~~l~~~l~-----~~~~i~~~~r~~~v~~~~~ 245 (319)
+..++++.|+|+||||+ |...+++|++ ...++..+.++.|++.++.
T Consensus 217 l~~l~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~ 268 (1010)
T 2xgj_A 217 IILLPDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLF 268 (1010)
T ss_dssp HHHSCTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEE
T ss_pred HHhcCCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEE
Confidence 23345678999999999 8889999985 3445667788888776654
No 25
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.90 E-value=8.9e-24 Score=186.76 Aligned_cols=166 Identities=20% Similarity=0.198 Sum_probs=112.4
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
++++|.++++.+..| ++++++||||||||.+|.+|+++.+..... ..++++++|+|+|+.|+++.+.+
T Consensus 53 ~~~~Q~~ai~~i~~~----------~~~li~apTGsGKT~~~~l~~l~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~~ 120 (237)
T 3bor_A 53 PSAIQQRAIIPCIKG----------YDVIAQAQSGTGKTATFAISILQQLEIEFK--ETQALVLAPTRELAQQIQKVILA 120 (237)
T ss_dssp CCHHHHHHHHHHHTT----------CCEEECCCSSHHHHHHHHHHHHHHCCTTSC--SCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC----------CCEEEECCCCCcHHHHHHHHHHHHHHhcCC--CceEEEEECcHHHHHHHHHHHHH
Confidence 568899999988753 568899999999999999999987654322 34677788999999999998887
Q ss_pred HhccccCCCCceEEEEEeccc------ccCCCCceEEEECchHHHHHHhcC-CCCCCccEEEEecccccccchhHHHHHH
Q psy496 125 ERDEQCGRPGSSVGYQIRLEK------ELPRKRGSILYCTAGILPEVMQSD-PILSGVSHIVMDEIHERSMISDFLLAIL 197 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~------~~~~~~~~Iiv~Tpg~ll~~l~~~-~~l~~v~~vViDEah~~~~~~~~~~~~l 197 (319)
..... +..+........ ......++|+|+|||++.+.+... ..+.++++||+||||.. ...++...+.
T Consensus 121 ~~~~~----~~~~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~-~~~~~~~~l~ 195 (237)
T 3bor_A 121 LGDYM----GATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEM-LSRGFKDQIY 195 (237)
T ss_dssp HTTTT----TCCEEEECC-------------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHH-HHTTCHHHHH
T ss_pred Hhhhc----CceEEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHh-hccCcHHHHH
Confidence 65322 222221111100 111123689999999999998554 34888999999999962 1222222223
Q ss_pred HhhhccccCceEEEecccc--ChhhHhh-hhCC
Q psy496 198 KDVTDKRKDLKLILMSATL--NAEKFSQ-FFGG 227 (319)
Q Consensus 198 ~~~~~~~~~~qiv~lSAT~--~~~~l~~-~l~~ 227 (319)
..+...+++.|++++|||+ +.+.+.+ |+.+
T Consensus 196 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~ 228 (237)
T 3bor_A 196 EIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRD 228 (237)
T ss_dssp HHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSS
T ss_pred HHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCC
Confidence 3333445678999999999 4455555 4443
No 26
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=99.90 E-value=2.9e-23 Score=203.24 Aligned_cols=225 Identities=14% Similarity=0.126 Sum_probs=138.0
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
+.+.|.++++.+..+ .+++++++||||||||++|++++++.+..... ..++++++|+++|+.|+.+++.+
T Consensus 142 p~~~Q~~ai~~i~~~--------~~~~~ll~apTGsGKT~~~~~~il~~l~~~~~--~~~vLvl~P~~~L~~Q~~~~~~~ 211 (508)
T 3fho_A 142 XXKIQEKALPLLLSN--------PPRNMIGQSQSGTGKTAAFALTMLSRVDASVP--KPQAICLAPSRELARQIMDVVTE 211 (508)
T ss_dssp CCCTTSSSHHHHHCS--------SCCCEEEECCSSTTSHHHHHHHHHHHSCTTCC--SCCEEEECSCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHcC--------CCCCEEEECCCCccHHHHHHHHHHHHHHhCCC--CceEEEEECcHHHHHHHHHHHHH
Confidence 568999999988753 34789999999999999999999987754432 34788888999999999999988
Q ss_pred HhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCC-CCCCccEEEEecccccccchhHHHHHHHhhhcc
Q psy496 125 ERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDP-ILSGVSHIVMDEIHERSMISDFLLAILKDVTDK 203 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~ 203 (319)
....... ....+...... ......++|+|+||+++.+.+.... .+.++++||+||+|.......+...........
T Consensus 212 ~~~~~~~--~~~~~~~~~~~-~~~~~~~~Ivv~T~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~ 288 (508)
T 3fho_A 212 MGKYTEV--KTAFGIKDSVP-KGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLL 288 (508)
T ss_dssp HSTTSSC--CEEC-----------CCCCSEEEECHHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHS
T ss_pred hCCccCe--eEEEEeCCccc-ccccCCCCEEEECHHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhC
Confidence 7543210 11111111111 1112357899999999999885544 488999999999997432222222233333335
Q ss_pred ccCceEEEeccccC--hhhHhhhhCCC-CEEEeCCcccc---ceeeeehhhhhhhhhhHHHHHHHHhhhhhhhccccCCC
Q psy496 204 RKDLKLILMSATLN--AEKFSQFFGGA-PILHIPGFTYP---VQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGGA 277 (319)
Q Consensus 204 ~~~~qiv~lSAT~~--~~~l~~~l~~~-~~i~~~~r~~~---v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 277 (319)
+++.|++++|||++ .+.+..++... ..+.+..+..+ +...+.... ....+....... +....+++
T Consensus 289 ~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----~~~~k~~~l~~l-----l~~~~~~~ 359 (508)
T 3fho_A 289 PRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTEELSVEGIKQLYMDCQ----SEEHKYNVLVEL-----YGLLTIGQ 359 (508)
T ss_dssp CTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCCCCC----CCCCEEEEC------CHHHHHHHHHH-----HC---CCC
T ss_pred CcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEeccccCCcccceEEEEECC----chHHHHHHHHHH-----HHhcCCCc
Confidence 56789999999993 56666655443 33444333322 222222211 111111111111 12223689
Q ss_pred cEEEeCCccccccc
Q psy496 278 PILHIPGFTYPVQE 291 (319)
Q Consensus 278 ~LVFlp~R~~~v~~ 291 (319)
+|||++++..+.++
T Consensus 360 ~LVF~~s~~~a~~l 373 (508)
T 3fho_A 360 SIIFCKKKDTAEEI 373 (508)
T ss_dssp EEEBCSSTTTTTHH
T ss_pred EEEEECCHHHHHHH
Confidence 99999999887443
No 27
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.90 E-value=8.5e-24 Score=185.97 Aligned_cols=168 Identities=17% Similarity=0.139 Sum_probs=113.7
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
++++|.++++.+.. +++++++||||||||.+|.+|+++.+..... ..++++++|+++|+.|+.+.+.+
T Consensus 47 ~~~~Q~~~i~~~~~----------~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~~ 114 (230)
T 2oxc_A 47 PSPVQLKAIPLGRC----------GLDLIVQAKSGTGKTCVFSTIALDSLVLENL--STQILILAPTREIAVQIHSVITA 114 (230)
T ss_dssp CCHHHHHHHHHHHT----------TCCEEEECCTTSSHHHHHHHHHHHHCCTTSC--SCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhC----------CCCEEEECCCCCcHHHHHHHHHHHHHHhcCC--CceEEEEeCCHHHHHHHHHHHHH
Confidence 56889999998765 3568999999999999999999987654332 34678888999999999999887
Q ss_pred HhccccCCCCceEEEEEeccc----ccCCCCceEEEECchHHHHHHhcCC-CCCCccEEEEecccccccchh-HHHHHHH
Q psy496 125 ERDEQCGRPGSSVGYQIRLEK----ELPRKRGSILYCTAGILPEVMQSDP-ILSGVSHIVMDEIHERSMISD-FLLAILK 198 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~----~~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vViDEah~~~~~~~-~~~~~l~ 198 (319)
...... +..++....... .....+++|+|+|||++.+.+..+. .+.+++++|+||+|... ..+ +...+..
T Consensus 115 ~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~-~~~~~~~~~~~ 190 (230)
T 2oxc_A 115 IGIKME---GLECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLL-EEGSFQEQINW 190 (230)
T ss_dssp HTTTST---TCCEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHH-STTSSHHHHHH
T ss_pred HhcccC---CceEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhh-cCcchHHHHHH
Confidence 754321 333332211111 0111357899999999999885543 47899999999999731 111 2222222
Q ss_pred hhhccccCceEEEeccccCh--hh-HhhhhCCC
Q psy496 199 DVTDKRKDLKLILMSATLNA--EK-FSQFFGGA 228 (319)
Q Consensus 199 ~~~~~~~~~qiv~lSAT~~~--~~-l~~~l~~~ 228 (319)
.+...+++.|++++|||++. .. +.+|++++
T Consensus 191 i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~p 223 (230)
T 2oxc_A 191 IYSSLPASKQMLAVSATYPEFLANALTKYMRDP 223 (230)
T ss_dssp HHHHSCSSCEEEEEESCCCHHHHHHHTTTCSSC
T ss_pred HHHhCCCCCeEEEEEeccCHHHHHHHHHHcCCC
Confidence 23334557899999999933 23 34455543
No 28
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.89 E-value=9e-24 Score=189.76 Aligned_cols=170 Identities=16% Similarity=0.161 Sum_probs=118.1
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCC--CCccEEEEecccHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNR--GSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~--~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
++++|.+++|.+..+ ++++++||||||||++|.+|+++.+..... ....++++++|||+||.|+++.+
T Consensus 77 ~~~~Q~~~i~~~~~~----------~~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~ 146 (262)
T 3ly5_A 77 MTEIQHKSIRPLLEG----------RDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVL 146 (262)
T ss_dssp CCHHHHHHHHHHHHT----------CCCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC----------CcEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHH
Confidence 568999999998864 457888889999999999999998865221 11346888889999999999999
Q ss_pred HHHhccccCCCCceEEEEEeccccc-----CCCCceEEEECchHHHHHHhcCC--CCCCccEEEEecccccccchhHHHH
Q psy496 123 AQERDEQCGRPGSSVGYQIRLEKEL-----PRKRGSILYCTAGILPEVMQSDP--ILSGVSHIVMDEIHERSMISDFLLA 195 (319)
Q Consensus 123 ~~~~~~~~~~~g~~vg~~~~~~~~~-----~~~~~~Iiv~Tpg~ll~~l~~~~--~l~~v~~vViDEah~~~~~~~~~~~ 195 (319)
.+..... +..++......... ...+.+|+|+|||++.+++.... .++++++||+||||.. ...++...
T Consensus 147 ~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l-~~~~~~~~ 221 (262)
T 3ly5_A 147 KELMTHH----VHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRI-LDVGFEEE 221 (262)
T ss_dssp HHHTTTC----CSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHH-HHTTCHHH
T ss_pred HHHHhhc----CceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHH-hhhhHHHH
Confidence 8876533 33333222211100 01236799999999999885543 5889999999999962 22223333
Q ss_pred HHHhhhccccCceEEEecccc--ChhhHhhh-hCCCC
Q psy496 196 ILKDVTDKRKDLKLILMSATL--NAEKFSQF-FGGAP 229 (319)
Q Consensus 196 ~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~-l~~~~ 229 (319)
+.+.+...+++.|+++||||+ +.+.+++. +.+.+
T Consensus 222 l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~~~~ 258 (262)
T 3ly5_A 222 LKQIIKLLPTRRQTMLFSATQTRKVEDLARISLKKEP 258 (262)
T ss_dssp HHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCSSCC
T ss_pred HHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcCCCC
Confidence 333334455678999999999 45566664 44443
No 29
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.89 E-value=2.5e-23 Score=185.34 Aligned_cols=173 Identities=17% Similarity=0.145 Sum_probs=115.4
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhC-------CCCccEEEEecccHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARN-------RGSECCIMVTQPRRISAIA 117 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~-------~~~~~~vl~~~Ptr~la~q 117 (319)
++++|.+++|.+..| ++++++||||||||.+|.+|+++.+.... .....++++++|||+|+.|
T Consensus 46 ~~~~Q~~~i~~i~~~----------~~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q 115 (253)
T 1wrb_A 46 PTPIQKNAIPAILEH----------RDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQ 115 (253)
T ss_dssp CCHHHHHHHHHHHTT----------CCEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHH
T ss_pred CCHHHHHHHHHHhCC----------CCEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHH
Confidence 568999999988753 56889999999999999999998876432 1223478888899999999
Q ss_pred HHHHHHHHhccccCCCCceEEEEEeccc-----ccCCCCceEEEECchHHHHHHhcCC-CCCCccEEEEecccccccchh
Q psy496 118 IAERVAQERDEQCGRPGSSVGYQIRLEK-----ELPRKRGSILYCTAGILPEVMQSDP-ILSGVSHIVMDEIHERSMISD 191 (319)
Q Consensus 118 ~~~~~~~~~~~~~~~~g~~vg~~~~~~~-----~~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vViDEah~~~~~~~ 191 (319)
+.+.+.+..... +..+........ .....+++|+|+||+++.+.+.... .+++++++|+||||.. ...+
T Consensus 116 ~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~-~~~~ 190 (253)
T 1wrb_A 116 ILSESQKFSLNT----PLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRM-LDMG 190 (253)
T ss_dssp HHHHHHHHHTTS----SCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHH-HHTT
T ss_pred HHHHHHHHhccC----CceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHH-HhCc
Confidence 999888765432 222221111110 0111356899999999999985544 5889999999999972 1111
Q ss_pred ---HHHHHHHhhhcccc--CceEEEecccc--ChhhHhhh-hCCCCEEEe
Q psy496 192 ---FLLAILKDVTDKRK--DLKLILMSATL--NAEKFSQF-FGGAPILHI 233 (319)
Q Consensus 192 ---~~~~~l~~~~~~~~--~~qiv~lSAT~--~~~~l~~~-l~~~~~i~~ 233 (319)
.+..+++.+ ..+. +.|+++||||+ +.+.+++. +.+...+.+
T Consensus 191 ~~~~~~~i~~~~-~~~~~~~~q~l~~SAT~~~~~~~~~~~~l~~~~~i~~ 239 (253)
T 1wrb_A 191 FEPQIRKIIEES-NMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFMTV 239 (253)
T ss_dssp CHHHHHHHHHSS-CCCCGGGCEEEEEESSCCHHHHHHHHHHCSSCEEEEE
T ss_pred hHHHHHHHHhhc-cCCCCCCcEEEEEEEeCCHHHHHHHHHHcCCCEEEEE
Confidence 222222221 1222 67999999999 44566654 443333433
No 30
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=99.89 E-value=2.7e-23 Score=197.06 Aligned_cols=218 Identities=16% Similarity=0.130 Sum_probs=134.8
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
++++|.++++.+..| ++++++||||||||++|++|+++.+..... ..++++++|+++|+.|+++.+.+
T Consensus 60 ~~~~Q~~ai~~i~~~----------~~~lv~a~TGsGKT~~~~~~~~~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~~ 127 (410)
T 2j0s_A 60 PSAIQQRAIKQIIKG----------RDVIAQSQSGTGKTATFSISVLQCLDIQVR--ETQALILAPTRELAVQIQKGLLA 127 (410)
T ss_dssp CCHHHHHHHHHHHTT----------CCEEEECCTTSSHHHHHHHHHHHTCCTTSC--SCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC----------CCEEEECCCCCCchHHHHHHHHHHHhhccC--CceEEEEcCcHHHHHHHHHHHHH
Confidence 568899999988753 568999999999999999999987643322 34777888999999999998887
Q ss_pred HhccccCCCCceEEEEEecccc-----cCCCCceEEEECchHHHHHHhcC-CCCCCccEEEEecccccccchhHHHHHHH
Q psy496 125 ERDEQCGRPGSSVGYQIRLEKE-----LPRKRGSILYCTAGILPEVMQSD-PILSGVSHIVMDEIHERSMISDFLLAILK 198 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~~-----~~~~~~~Iiv~Tpg~ll~~l~~~-~~l~~v~~vViDEah~~~~~~~~~~~~l~ 198 (319)
..... +..++........ .....++|+|+|||++.+.+... ..+.++++||+||+|.. ...++.....+
T Consensus 128 ~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~-~~~~~~~~~~~ 202 (410)
T 2j0s_A 128 LGDYM----NVQCHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEM-LNKGFKEQIYD 202 (410)
T ss_dssp HTTTT----TCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHH-TSTTTHHHHHH
T ss_pred HhccC----CeEEEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHH-HhhhhHHHHHH
Confidence 64322 3333322211110 00124579999999999998554 34788999999999973 22333333333
Q ss_pred hhhccccCceEEEeccccCh--hhH-hhhhCCCCEEEeCCccc---cceeeeehhhhhhhhhhHHHHHHHHhhhhhhhcc
Q psy496 199 DVTDKRKDLKLILMSATLNA--EKF-SQFFGGAPILHIPGFTY---PVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQ 272 (319)
Q Consensus 199 ~~~~~~~~~qiv~lSAT~~~--~~l-~~~l~~~~~i~~~~r~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (319)
.+...+++.|++++|||++. ..+ ..++.+...+.+..... .+...+.... ....+.......+. .
T Consensus 203 i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~k~~~l~~~~~-----~ 273 (410)
T 2j0s_A 203 VYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVE----REEWKFDTLCDLYD-----T 273 (410)
T ss_dssp HHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECCCGGGCSCTTEEEEEEEES----STTHHHHHHHHHHH-----H
T ss_pred HHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEecCccccCCCceEEEEEeC----cHHhHHHHHHHHHH-----h
Confidence 44445567899999999933 333 34554433333332221 2233333221 11111111111111 1
Q ss_pred ccCCCcEEEeCCcccc
Q psy496 273 FFGGAPILHIPGFTYP 288 (319)
Q Consensus 273 ~~~g~~LVFlp~R~~~ 288 (319)
...+++|||++++..+
T Consensus 274 ~~~~~~lVf~~~~~~~ 289 (410)
T 2j0s_A 274 LTITQAVIFCNTKRKV 289 (410)
T ss_dssp HTSSEEEEECSSHHHH
T ss_pred cCCCcEEEEEcCHHHH
Confidence 1257899999998665
No 31
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.89 E-value=1.9e-23 Score=201.79 Aligned_cols=197 Identities=18% Similarity=0.170 Sum_probs=130.9
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
.+|+|+ +||.++.+ +++++++||||||||++|++|++..+...+ .++++++|||+||.|+++.+.
T Consensus 5 ~~~iq~-~i~~~l~~---------~~~~lv~a~TGsGKT~~~~~~~l~~~~~~~----~~~lvl~Ptr~La~Q~~~~l~- 69 (451)
T 2jlq_A 5 GEPDYE-VDEDIFRK---------KRLTIMDLHPGAGKTKRILPSIVREALLRR----LRTLILAPTRVVAAEMEEALR- 69 (451)
T ss_dssp CSCCCC-CCGGGGST---------TCEEEECCCTTSSCCTTHHHHHHHHHHHTT----CCEEEEESSHHHHHHHHHHTT-
T ss_pred CCCcHH-HHHHHHhc---------CCeEEEECCCCCCHhhHHHHHHHHHHHhcC----CcEEEECCCHHHHHHHHHHhc-
Confidence 457775 68887653 345689999999999999999998766533 367777799999999998763
Q ss_pred HhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccc
Q psy496 125 ERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKR 204 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~ 204 (319)
|..+++...........+..|.++|+|.+.+.+.....++++++|||||+|+++...+.....+... ...
T Consensus 70 ---------g~~v~~~~~~~~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~~~~~-~~~ 139 (451)
T 2jlq_A 70 ---------GLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTR-VEM 139 (451)
T ss_dssp ---------TSCEEECCTTCSCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHHHHHHH-HHT
T ss_pred ---------CceeeeeeccccccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHHHHHHh-hcC
Confidence 3444544433222222345699999999999998778899999999999998644444443333322 234
Q ss_pred cCceEEEeccccChhhHhhhhCCCCEEEeCCccccceeeeehhhhhhhhhhHHHHHHHHhhhhhhhccccCCCcEEEeCC
Q psy496 205 KDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGGAPILHIPG 284 (319)
Q Consensus 205 ~~~qiv~lSAT~~~~~l~~~l~~~~~i~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~ 284 (319)
++.|+++||||++.+....+.++.+++.+. +..|... |.. ..+. +.. .++++|||+++
T Consensus 140 ~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~-~~~p~~~-~~~-----------------~~~~--l~~-~~~~~lVF~~s 197 (451)
T 2jlq_A 140 GEAAAIFMTATPPGSTDPFPQSNSPIEDIE-REIPERS-WNT-----------------GFDW--ITD-YQGKTVWFVPS 197 (451)
T ss_dssp TSCEEEEECSSCTTCCCSSCCCSSCEEEEE-CCCCSSC-CSS-----------------SCHH--HHH-CCSCEEEECSS
T ss_pred CCceEEEEccCCCccchhhhcCCCceEecC-ccCCchh-hHH-----------------HHHH--HHh-CCCCEEEEcCC
Confidence 578999999999655444455555555443 2233111 100 0000 111 26799999999
Q ss_pred cccc
Q psy496 285 FTYP 288 (319)
Q Consensus 285 R~~~ 288 (319)
+..+
T Consensus 198 ~~~a 201 (451)
T 2jlq_A 198 IKAG 201 (451)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9776
No 32
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=99.89 E-value=1.7e-23 Score=194.61 Aligned_cols=232 Identities=16% Similarity=0.135 Sum_probs=144.6
Q ss_pred cccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccE
Q psy496 25 QVPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECC 104 (319)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~ 104 (319)
++++.+.+...+..+. ++++.|.++++.+..+ +++++++||||||||+++.+|++..+... ...+
T Consensus 12 ~l~~~~~~~l~~~g~~---~~~~~Q~~~i~~~~~~---------~~~~l~~~~TGsGKT~~~~~~~~~~~~~~---~~~~ 76 (367)
T 1hv8_A 12 NLSDNILNAIRNKGFE---KPTDIQMKVIPLFLND---------EYNIVAQARTGSGKTASFAIPLIELVNEN---NGIE 76 (367)
T ss_dssp SCCHHHHHHHHHHTCC---SCCHHHHHHHHHHHHT---------CSEEEEECCSSSSHHHHHHHHHHHHSCSS---SSCC
T ss_pred CCCHHHHHHHHHcCCC---CCCHHHHHHHHHHhCC---------CCCEEEECCCCChHHHHHHHHHHHHhccc---CCCc
Confidence 4555555544444332 2568899999988753 35789999999999999999988765432 2347
Q ss_pred EEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccc----cCCCCceEEEECchHHHHHHhcCC-CCCCccEEE
Q psy496 105 IMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKE----LPRKRGSILYCTAGILPEVMQSDP-ILSGVSHIV 179 (319)
Q Consensus 105 vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~----~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vV 179 (319)
+++++|+++|+.|+++.+.+..+.. +..++........ ....+.+|+|+||+++.+.+.... .+.+++++|
T Consensus 77 ~lil~P~~~L~~q~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iI 152 (367)
T 1hv8_A 77 AIILTPTRELAIQVADEIESLKGNK----NLKIAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFI 152 (367)
T ss_dssp EEEECSCHHHHHHHHHHHHHHHCSS----CCCEEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhCCC----CceEEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEE
Confidence 8888899999999999998876543 2223211111110 001246799999999999985544 488999999
Q ss_pred EecccccccchhHHHHHHHhhhccccCceEEEeccccChh---hHhhhhCCCCEEEeCCccccceeeeehhhhhhhhhhH
Q psy496 180 MDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATLNAE---KFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMTRKDL 256 (319)
Q Consensus 180 iDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~~~~---~l~~~l~~~~~i~~~~r~~~v~~~~~~~~~~~~~~~~ 256 (319)
+||+|.. ....+.....+.+...+++.+++++|||++.. .+..++++...+... ....++..+.... ....
T Consensus 153 iDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~----~~~~ 226 (367)
T 1hv8_A 153 LDEADEM-LNMGFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKAK-INANIEQSYVEVN----ENER 226 (367)
T ss_dssp EETHHHH-HTTTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEECC-SSSSSEEEEEECC----GGGH
T ss_pred EeCchHh-hhhchHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEEec-CCCCceEEEEEeC----hHHH
Confidence 9999973 22223333333344455678999999999432 344566544333332 2234444443221 1111
Q ss_pred HHHHHHHhhhhhhhccccCCCcEEEeCCcccc
Q psy496 257 KLILMSATLNAEKFSQFFGGAPILHIPGFTYP 288 (319)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~ 288 (319)
...+... +. ..++++|||++++..+
T Consensus 227 ~~~l~~~------l~-~~~~~~lvf~~~~~~~ 251 (367)
T 1hv8_A 227 FEALCRL------LK-NKEFYGLVFCKTKRDT 251 (367)
T ss_dssp HHHHHHH------HC-STTCCEEEECSSHHHH
T ss_pred HHHHHHH------Hh-cCCCcEEEEECCHHHH
Confidence 1111111 11 2377899999998665
No 33
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.89 E-value=5.3e-23 Score=179.26 Aligned_cols=168 Identities=16% Similarity=0.127 Sum_probs=115.1
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
+++.|.++++.+.++ +++++++|||||||.++.+|+++.+.... ...++++++|+++|+.|+++.+.+
T Consensus 37 ~~~~Q~~~i~~~~~~----------~~~li~~~TGsGKT~~~~~~~~~~~~~~~--~~~~~lil~Pt~~L~~q~~~~~~~ 104 (220)
T 1t6n_A 37 PSEVQHECIPQAILG----------MDVLCQAKSGMGKTAVFVLATLQQLEPVT--GQVSVLVMCHTRELAFQISKEYER 104 (220)
T ss_dssp CCHHHHHHHHHHHTT----------CCEEEECCTTSCHHHHHHHHHHHHCCCCT--TCCCEEEECSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhCC----------CCEEEECCCCCchhhhhhHHHHHhhhccC--CCEEEEEEeCCHHHHHHHHHHHHH
Confidence 568899999988753 45899999999999999999988754322 234788888999999999998887
Q ss_pred HhccccCCCCceEEEEEecccc------cCCCCceEEEECchHHHHHHhcCC-CCCCccEEEEecccccccchhHHHHHH
Q psy496 125 ERDEQCGRPGSSVGYQIRLEKE------LPRKRGSILYCTAGILPEVMQSDP-ILSGVSHIVMDEIHERSMISDFLLAIL 197 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~~------~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vViDEah~~~~~~~~~~~~l 197 (319)
...... +..++........ ......+|+|+||+++.+.+.... .+.+++++|+||||......++.....
T Consensus 105 ~~~~~~---~~~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~ 181 (220)
T 1t6n_A 105 FSKYMP---NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQ 181 (220)
T ss_dssp HTTTST---TCCEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHH
T ss_pred HHhhCC---CceEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHH
Confidence 754321 3333321111110 001235799999999999885543 488999999999997321223333333
Q ss_pred HhhhccccCceEEEecccc--ChhhHhh-hhCC
Q psy496 198 KDVTDKRKDLKLILMSATL--NAEKFSQ-FFGG 227 (319)
Q Consensus 198 ~~~~~~~~~~qiv~lSAT~--~~~~l~~-~l~~ 227 (319)
+.+...+++.|++++|||+ +.+.+.+ |+.+
T Consensus 182 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~ 214 (220)
T 1t6n_A 182 EIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQD 214 (220)
T ss_dssp HHHHTSCSSSEEEEEESCCCTTTHHHHHTTCSS
T ss_pred HHHHhCCCcCeEEEEEeecCHHHHHHHHHHcCC
Confidence 3333455678999999999 4556655 4543
No 34
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.89 E-value=3.8e-23 Score=178.12 Aligned_cols=168 Identities=20% Similarity=0.140 Sum_probs=114.5
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhC-CCCccEEEEecccHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARN-RGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~-~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
++++|.++++.+.++ ++++++||||||||.++.+|+++.+.... .....++++++|+++|+.|+.+.+.
T Consensus 24 ~~~~Q~~~i~~~~~~----------~~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~ 93 (207)
T 2gxq_A 24 PTPIQAAALPLALEG----------KDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELT 93 (207)
T ss_dssp CCHHHHHHHHHHHTT----------CCEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCC----------CCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHH
Confidence 568899999987753 56899999999999999999998765321 1224578888899999999999998
Q ss_pred HHhccccCCCCceEEEEEeccc-----ccCCCCceEEEECchHHHHHHhc-CCCCCCccEEEEecccccccchhHHHHHH
Q psy496 124 QERDEQCGRPGSSVGYQIRLEK-----ELPRKRGSILYCTAGILPEVMQS-DPILSGVSHIVMDEIHERSMISDFLLAIL 197 (319)
Q Consensus 124 ~~~~~~~~~~g~~vg~~~~~~~-----~~~~~~~~Iiv~Tpg~ll~~l~~-~~~l~~v~~vViDEah~~~~~~~~~~~~l 197 (319)
+.... ..+........ .....+++|+|+||+++.+.+.. ...+.+++++|+||||.. ...++.....
T Consensus 94 ~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~-~~~~~~~~~~ 166 (207)
T 2gxq_A 94 AVAPH------LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEM-LSMGFEEEVE 166 (207)
T ss_dssp HHCTT------SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHH-HHTTCHHHHH
T ss_pred HHhhc------ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHh-hccchHHHHH
Confidence 87542 11211111100 00012467999999999998854 345889999999999962 1222222222
Q ss_pred HhhhccccCceEEEecccc--ChhhHhhhhCCCC
Q psy496 198 KDVTDKRKDLKLILMSATL--NAEKFSQFFGGAP 229 (319)
Q Consensus 198 ~~~~~~~~~~qiv~lSAT~--~~~~l~~~l~~~~ 229 (319)
..+...+++.|++++|||+ +.+.+.+++...|
T Consensus 167 ~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p 200 (207)
T 2gxq_A 167 ALLSATPPSRQTLLFSATLPSWAKRLAERYMKNP 200 (207)
T ss_dssp HHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSC
T ss_pred HHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCC
Confidence 2333455678999999999 4556666554444
No 35
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=99.89 E-value=5.1e-23 Score=203.47 Aligned_cols=176 Identities=21% Similarity=0.186 Sum_probs=115.7
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCC--CCccEEEEecccHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNR--GSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~--~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
++|+|.++||.++. .++++++++||||||||++|.+|+++.+..... ....++++++||++||.|+++.+
T Consensus 95 ~~~~Q~~~i~~~l~--------~~~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~ 166 (563)
T 3i5x_A 95 LTPVQQKTIKPILS--------SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEV 166 (563)
T ss_dssp CCHHHHHHHHHHHS--------SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc--------CCCCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHH
Confidence 57899999998872 245789999999999999999999998876442 12347888889999999999999
Q ss_pred HHHhccccCCCCceEEEEEecccc------cCCCCceEEEECchHHHHHHhcC--CCCCCccEEEEecccccc-----cc
Q psy496 123 AQERDEQCGRPGSSVGYQIRLEKE------LPRKRGSILYCTAGILPEVMQSD--PILSGVSHIVMDEIHERS-----MI 189 (319)
Q Consensus 123 ~~~~~~~~~~~g~~vg~~~~~~~~------~~~~~~~Iiv~Tpg~ll~~l~~~--~~l~~v~~vViDEah~~~-----~~ 189 (319)
.+.........+..+......... ....+++|+|+|||++++++... ..++++++||+||||+.. ..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~~f~~~ 246 (563)
T 3i5x_A 167 KKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDD 246 (563)
T ss_dssp HHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHH
T ss_pred HHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhccchHHH
Confidence 886432110001112111111110 00124679999999999988543 247889999999999721 11
Q ss_pred hhHHHHHHHhhh-ccccCceEEEeccccC--hhhHhhhhCCC
Q psy496 190 SDFLLAILKDVT-DKRKDLKLILMSATLN--AEKFSQFFGGA 228 (319)
Q Consensus 190 ~~~~~~~l~~~~-~~~~~~qiv~lSAT~~--~~~l~~~l~~~ 228 (319)
...+...+.... ...++.|+++||||++ ...+..++...
T Consensus 247 ~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~~~~ 288 (563)
T 3i5x_A 247 LETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNK 288 (563)
T ss_dssp HHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCS
T ss_pred HHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHHhcCC
Confidence 112222222222 1334779999999993 45666655443
No 36
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=99.88 E-value=4.1e-22 Score=188.17 Aligned_cols=232 Identities=15% Similarity=0.091 Sum_probs=141.3
Q ss_pred ccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEE
Q psy496 26 VPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCI 105 (319)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~v 105 (319)
+++.+.+...+..+. .+++.|.++++.+..+ ++++++||||||||+++.+|++..+..... ..++
T Consensus 28 l~~~l~~~l~~~g~~---~~~~~Q~~~i~~i~~~----------~~~li~a~TGsGKT~~~~~~~~~~~~~~~~--~~~~ 92 (400)
T 1s2m_A 28 LKRELLMGIFEAGFE---KPSPIQEEAIPVAITG----------RDILARAKNGTGKTAAFVIPTLEKVKPKLN--KIQA 92 (400)
T ss_dssp CCHHHHHHHHHTTCC---SCCHHHHHHHHHHHHT----------CCEEEECCTTSCHHHHHHHHHHHHCCTTSC--SCCE
T ss_pred CCHHHHHHHHHCCCC---CCCHHHHHHHHHHhcC----------CCEEEECCCCcHHHHHHHHHHHHHHhhccC--CccE
Confidence 444444444443332 2568999999988754 458999999999999999999887644322 3467
Q ss_pred EEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc-----ccCCCCceEEEECchHHHHHHhcC-CCCCCccEEE
Q psy496 106 MVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK-----ELPRKRGSILYCTAGILPEVMQSD-PILSGVSHIV 179 (319)
Q Consensus 106 l~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~-----~~~~~~~~Iiv~Tpg~ll~~l~~~-~~l~~v~~vV 179 (319)
++++|+++|+.|+++.+.+..... +..++....... .....+++|+|+||+++.+.+... ..+.++++||
T Consensus 93 lil~P~~~L~~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vI 168 (400)
T 1s2m_A 93 LIMVPTRELALQTSQVVRTLGKHC----GISCMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFI 168 (400)
T ss_dssp EEECSSHHHHHHHHHHHHHHTTTT----TCCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEE
T ss_pred EEEcCCHHHHHHHHHHHHHHhccc----CceEEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEE
Confidence 788899999999999888775432 333332221111 111245689999999999988554 4588999999
Q ss_pred EecccccccchhHHHHHHHhh-hccccCceEEEeccccCh--h-hHhhhhCCCCEEEeCCcc--ccceeeeehhhhhhhh
Q psy496 180 MDEIHERSMISDFLLAILKDV-TDKRKDLKLILMSATLNA--E-KFSQFFGGAPILHIPGFT--YPVQEYYLEDVLNMTR 253 (319)
Q Consensus 180 iDEah~~~~~~~~~~~~l~~~-~~~~~~~qiv~lSAT~~~--~-~l~~~l~~~~~i~~~~r~--~~v~~~~~~~~~~~~~ 253 (319)
+||+|.. ...++. ..+..+ ...++..+++++|||++. . .+..++.....+...... ..+..++.... .
T Consensus 169 iDEaH~~-~~~~~~-~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 242 (400)
T 1s2m_A 169 MDEADKM-LSRDFK-TIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEELTLKGITQYYAFVE----E 242 (400)
T ss_dssp EESHHHH-SSHHHH-HHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEESCCSSCBCTTEEEEEEECC----G
T ss_pred EeCchHh-hhhchH-HHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEEeccccccCCceeEEEEec----h
Confidence 9999962 222333 333333 334567899999999932 2 344455543333332221 12233332211 1
Q ss_pred hhHHHHHHHHhhhhhhhccccCCCcEEEeCCcccc
Q psy496 254 KDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYP 288 (319)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~ 288 (319)
......+ ...+. ...++++|||++++..+
T Consensus 243 ~~k~~~l-~~~~~-----~~~~~~~lVf~~~~~~~ 271 (400)
T 1s2m_A 243 RQKLHCL-NTLFS-----KLQINQAIIFCNSTNRV 271 (400)
T ss_dssp GGHHHHH-HHHHH-----HSCCSEEEEECSSHHHH
T ss_pred hhHHHHH-HHHHh-----hcCCCcEEEEEecHHHH
Confidence 1111111 11111 12367899999998665
No 37
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=99.88 E-value=1.6e-22 Score=189.98 Aligned_cols=220 Identities=15% Similarity=0.126 Sum_probs=137.9
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
+++.|.++++.+.. +++++++||||||||.++.+|++..+.... ...++++++|+++|+.|+.+.+.+
T Consensus 31 ~~~~Q~~~i~~~~~----------~~~~lv~a~TGsGKT~~~~~~~~~~l~~~~--~~~~~lil~P~~~L~~q~~~~~~~ 98 (391)
T 1xti_A 31 PSEVQHECIPQAIL----------GMDVLCQAKSGMGKTAVFVLATLQQLEPVT--GQVSVLVMCHTRELAFQISKEYER 98 (391)
T ss_dssp CCHHHHHHHHHHTT----------TCCEEEECSSCSSHHHHHHHHHHHHCCCCT--TCCCEEEECSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc----------CCcEEEECCCCCcHHHHHHHHHHHhhcccC--CCeeEEEECCCHHHHHHHHHHHHH
Confidence 56889999988764 356999999999999999999987754322 234788888999999999998888
Q ss_pred HhccccCCCCceEEEEEecccc------cCCCCceEEEECchHHHHHHhcCC-CCCCccEEEEecccccccchhHHHHHH
Q psy496 125 ERDEQCGRPGSSVGYQIRLEKE------LPRKRGSILYCTAGILPEVMQSDP-ILSGVSHIVMDEIHERSMISDFLLAIL 197 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~~------~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vViDEah~~~~~~~~~~~~l 197 (319)
...... +..++........ .....++|+|+||+++.+.+.... .+.++++||+||+|......++.....
T Consensus 99 ~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~ 175 (391)
T 1xti_A 99 FSKYMP---NVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQ 175 (391)
T ss_dssp HTTTCT---TCCEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHH
T ss_pred HHhhCC---CeEEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHH
Confidence 754322 3333322111110 001235799999999999885544 488999999999997422234444444
Q ss_pred HhhhccccCceEEEecccc--Chhh-HhhhhCCCCEEEeCCcc----ccceeeeehhhhhhhhhhHHHHHHHHhhhhhhh
Q psy496 198 KDVTDKRKDLKLILMSATL--NAEK-FSQFFGGAPILHIPGFT----YPVQEYYLEDVLNMTRKDLKLILMSATLNAEKF 270 (319)
Q Consensus 198 ~~~~~~~~~~qiv~lSAT~--~~~~-l~~~l~~~~~i~~~~r~----~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (319)
+.+...+++.|++++|||+ +... +..++.+...+.+.... ..+...+.... .......+.. .+.
T Consensus 176 ~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~~-~l~---- 246 (391)
T 1xti_A 176 EIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLK----DNEKNRKLFD-LLD---- 246 (391)
T ss_dssp HHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEECCCCCCCCCTTCEEEEEECC----GGGHHHHHHH-HHH----
T ss_pred HHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEecCccccCcccceEEEEEcC----chhHHHHHHH-HHH----
Confidence 4444455678999999999 3333 44455544444443321 22333333221 1111111111 111
Q ss_pred ccccCCCcEEEeCCccccc
Q psy496 271 SQFFGGAPILHIPGFTYPV 289 (319)
Q Consensus 271 ~~~~~g~~LVFlp~R~~~v 289 (319)
...++++|||++++..+.
T Consensus 247 -~~~~~~~lvf~~~~~~~~ 264 (391)
T 1xti_A 247 -VLEFNQVVIFVKSVQRCI 264 (391)
T ss_dssp -HSCCSEEEEECSCHHHHH
T ss_pred -hcCCCcEEEEeCcHHHHH
Confidence 123688999999987653
No 38
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.88 E-value=1.1e-22 Score=212.69 Aligned_cols=178 Identities=17% Similarity=0.173 Sum_probs=128.5
Q ss_pred cccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHH
Q psy496 43 CCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 43 ~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
.++.+.|.++|+.+..| ++++++||||||||+++.+++...+... .++++++|+++|+.|+++++
T Consensus 38 f~l~~~Q~~aI~~il~g----------~~vlv~apTGsGKTlv~~~~i~~~~~~g-----~~vlvl~PtraLa~Q~~~~l 102 (997)
T 4a4z_A 38 FELDTFQKEAVYHLEQG----------DSVFVAAHTSAGKTVVAEYAIAMAHRNM-----TKTIYTSPIKALSNQKFRDF 102 (997)
T ss_dssp SCCCHHHHHHHHHHHTT----------CEEEEECCTTSCSHHHHHHHHHHHHHTT-----CEEEEEESCGGGHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcC----------CCEEEEECCCCcHHHHHHHHHHHHHhcC-----CeEEEEeCCHHHHHHHHHHH
Confidence 34568899999887653 5689999999999999999887754332 37888889999999999999
Q ss_pred HHHhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCC-CCCCccEEEEecccccccchhHHHHHHHhhh
Q psy496 123 AQERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDP-ILSGVSHIVMDEIHERSMISDFLLAILKDVT 201 (319)
Q Consensus 123 ~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vViDEah~~~~~~~~~~~~l~~~~ 201 (319)
.+.+. +..++.. .++.......+|+|+|||+|.+++.... .+.++++|||||+|.. ...+....+.+.+.
T Consensus 103 ~~~~~------~~~v~~l--~G~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l-~d~~~g~~~e~ii~ 173 (997)
T 4a4z_A 103 KETFD------DVNIGLI--TGDVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYV-NDQDRGVVWEEVII 173 (997)
T ss_dssp HTTC--------CCEEEE--CSSCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCC-CTTCTTCCHHHHHH
T ss_pred HHHcC------CCeEEEE--eCCCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccc-cccchHHHHHHHHH
Confidence 88653 2233322 1222223457899999999999885444 4899999999999962 12221112223333
Q ss_pred ccccCceEEEecccc-ChhhHhhhhC-----CCCEEEeCCccccceeee
Q psy496 202 DKRKDLKLILMSATL-NAEKFSQFFG-----GAPILHIPGFTYPVQEYY 244 (319)
Q Consensus 202 ~~~~~~qiv~lSAT~-~~~~l~~~l~-----~~~~i~~~~r~~~v~~~~ 244 (319)
..+++.++|++|||+ |..++++|++ ...++..+.|+.|++.++
T Consensus 174 ~l~~~v~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v 222 (997)
T 4a4z_A 174 MLPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINI 222 (997)
T ss_dssp HSCTTCEEEEEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEE
T ss_pred hcccCCCEEEEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEE
Confidence 456688999999999 9999999995 234677788888887654
No 39
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=99.87 E-value=2.6e-23 Score=195.48 Aligned_cols=238 Identities=15% Similarity=0.111 Sum_probs=125.4
Q ss_pred cccccccchHHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccE
Q psy496 25 QVPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECC 104 (319)
Q Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~ 104 (319)
.+++.+.+...+..+. .+++.|.++++.+..+ ++++++||||||||.++.+|+++.+..... ..+
T Consensus 27 ~l~~~l~~~l~~~g~~---~~~~~Q~~~i~~i~~~----------~~~lv~~~TGsGKT~~~~~~~~~~l~~~~~--~~~ 91 (394)
T 1fuu_A 27 ELDENLLRGVFGYGFE---EPSAIQQRAIMPIIEG----------HDVLAQAQSGTGKTGTFSIAALQRIDTSVK--APQ 91 (394)
T ss_dssp CCCHHHHHHHHHHTCC---SCCHHHHHHHHHHHHT----------CCEEECCCSSHHHHHHHHHHHHHHCCTTCC--SCC
T ss_pred CCCHHHHHHHHHcCCC---CCCHHHHHHHHHHhCC----------CCEEEECCCCChHHHHHHHHHHHHhhccCC--CCC
Confidence 4566666655444332 3568899999998764 458889999999999999999987654332 346
Q ss_pred EEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc----ccCCCCceEEEECchHHHHHHhcCC-CCCCccEEE
Q psy496 105 IMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK----ELPRKRGSILYCTAGILPEVMQSDP-ILSGVSHIV 179 (319)
Q Consensus 105 vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~----~~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vV 179 (319)
+++++|+++|+.|+.+.+.+..... +..++....... .....+++|+|+||+++.+.+.... .+.+++++|
T Consensus 92 ~lil~P~~~L~~q~~~~~~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vI 167 (394)
T 1fuu_A 92 ALMLAPTRELALQIQKVVMALAFHM----DIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFI 167 (394)
T ss_dssp EEEECSSHHHHHHHHHHHHHHTTTS----CCCEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEE
T ss_pred EEEEcCCHHHHHHHHHHHHHHhccC----CeeEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEE
Confidence 7788899999999999888775432 333332211111 0001146799999999999885543 478999999
Q ss_pred EecccccccchhHHHHHHHhhhccccCceEEEeccccCh---hhHhhhhCCCCEEEeCCcccc---ceeeeehhhhhhhh
Q psy496 180 MDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATLNA---EKFSQFFGGAPILHIPGFTYP---VQEYYLEDVLNMTR 253 (319)
Q Consensus 180 iDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~~~---~~l~~~l~~~~~i~~~~r~~~---v~~~~~~~~~~~~~ 253 (319)
+||+|.. ...++.....+.+...++..|++++|||++. +.+..++.+...+........ +...+.... .
T Consensus 168 iDEah~~-~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 242 (394)
T 1fuu_A 168 LDEADEM-LSSGFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKDELTLEGIKQFYVNVE----E 242 (394)
T ss_dssp EETHHHH-HHTTCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEECC---------------------
T ss_pred EEChHHh-hCCCcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEecCccccCCCceEEEEEcC----c
Confidence 9999972 1122222233333345567899999999932 234456654444444332221 112222111 1
Q ss_pred hhHHHHHHHHhhhhhhhccccCCCcEEEeCCccccccc
Q psy496 254 KDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQE 291 (319)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~g~~LVFlp~R~~~v~~ 291 (319)
...+....... +....++++|||++++..+.+.
T Consensus 243 ~~~~~~~l~~~-----~~~~~~~~~lVf~~~~~~~~~l 275 (394)
T 1fuu_A 243 EEYKYECLTDL-----YDSISVTQAVIFCNTRRKVEEL 275 (394)
T ss_dssp --------------------------------------
T ss_pred hhhHHHHHHHH-----HhcCCCCcEEEEECCHHHHHHH
Confidence 11111111111 1112367899999999876443
No 40
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=99.87 E-value=3.4e-22 Score=198.56 Aligned_cols=176 Identities=22% Similarity=0.185 Sum_probs=114.9
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCC--CCccEEEEecccHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNR--GSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~--~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
++|+|.++|+.++. ..+++++++||||||||++|.+|+++.+..... ....++++++||++||.|+++.+
T Consensus 44 ~~~~Q~~~i~~il~--------~~~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~ 115 (579)
T 3sqw_A 44 LTPVQQKTIKPILS--------SEDHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEV 115 (579)
T ss_dssp CCHHHHHHHHHHHC--------SSSEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc--------cCCCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHH
Confidence 57999999998872 245789999999999999999999998876431 22357888889999999999998
Q ss_pred HHHhccccCCCCceEEEEEecccc------cCCCCceEEEECchHHHHHHhcC--CCCCCccEEEEeccccccc--chhH
Q psy496 123 AQERDEQCGRPGSSVGYQIRLEKE------LPRKRGSILYCTAGILPEVMQSD--PILSGVSHIVMDEIHERSM--ISDF 192 (319)
Q Consensus 123 ~~~~~~~~~~~g~~vg~~~~~~~~------~~~~~~~Iiv~Tpg~ll~~l~~~--~~l~~v~~vViDEah~~~~--~~~~ 192 (319)
.+............+......... ....+++|+|+|||+|++++... ..++++++||+||||+..- ....
T Consensus 116 ~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~gf~~~ 195 (579)
T 3sqw_A 116 KKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEIGFRDD 195 (579)
T ss_dssp HHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTSTTTHHH
T ss_pred HHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhcCCCHHH
Confidence 886532110001111111111110 00124679999999999988542 3478899999999997311 1122
Q ss_pred HHHHHHhhhc----cccCceEEEeccccC--hhhHhhhhCCC
Q psy496 193 LLAILKDVTD----KRKDLKLILMSATLN--AEKFSQFFGGA 228 (319)
Q Consensus 193 ~~~~l~~~~~----~~~~~qiv~lSAT~~--~~~l~~~l~~~ 228 (319)
+..++..+.. ..++.|+++||||++ ...+..++...
T Consensus 196 ~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~ 237 (579)
T 3sqw_A 196 LETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNK 237 (579)
T ss_dssp HHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTTTCCS
T ss_pred HHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHHHcCC
Confidence 2222222221 234679999999993 35566555443
No 41
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=99.86 E-value=2.5e-22 Score=184.64 Aligned_cols=210 Identities=16% Similarity=0.085 Sum_probs=132.1
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
+++.|.++++.+.+ +++++++||||||||+++++|+++. ..++++++|+++|+.|+++.+.+
T Consensus 17 l~~~Q~~~i~~i~~----------~~~~lv~~~TGsGKT~~~~~~~~~~--------~~~~liv~P~~~L~~q~~~~~~~ 78 (337)
T 2z0m_A 17 FTEVQSKTIPLMLQ----------GKNVVVRAKTGSGKTAAYAIPILEL--------GMKSLVVTPTRELTRQVASHIRD 78 (337)
T ss_dssp CCHHHHHHHHHHHT----------TCCEEEECCTTSSHHHHHHHHHHHH--------TCCEEEECSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc----------CCCEEEEcCCCCcHHHHHHHHHHhh--------cCCEEEEeCCHHHHHHHHHHHHH
Confidence 56889999998764 3579999999999999999998763 13677888999999999999887
Q ss_pred HhccccCCCCceEEEEEecccc----cCCCCceEEEECchHHHHHHhcCC-CCCCccEEEEecccccccchhHHHHHHHh
Q psy496 125 ERDEQCGRPGSSVGYQIRLEKE----LPRKRGSILYCTAGILPEVMQSDP-ILSGVSHIVMDEIHERSMISDFLLAILKD 199 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~~----~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vViDEah~~~~~~~~~~~~l~~ 199 (319)
..... +..++........ ....+++|+|+||+++.+.+.... .+.+++++|+||+|... ..++.......
T Consensus 79 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~-~~~~~~~~~~~ 153 (337)
T 2z0m_A 79 IGRYM----DTKVAEVYGGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMF-EMGFIDDIKII 153 (337)
T ss_dssp HTTTS----CCCEEEECTTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHH-HTTCHHHHHHH
T ss_pred Hhhhc----CCcEEEEECCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhh-ccccHHHHHHH
Confidence 64322 3333322111100 001246799999999999885543 47899999999999721 11122222222
Q ss_pred hhccccCceEEEeccccCh---hhHhhhhCCCCEEEeCCccccceeeeehhhhhhhhhhHHHHHHHHhhhhhhhccccCC
Q psy496 200 VTDKRKDLKLILMSATLNA---EKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGG 276 (319)
Q Consensus 200 ~~~~~~~~qiv~lSAT~~~---~~l~~~l~~~~~i~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 276 (319)
+...+...+++++|||++. +.+..|+.+...+........++..+.... ...+..+ .. +....++
T Consensus 154 ~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-----~~--~~~~~~~ 221 (337)
T 2z0m_A 154 LAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEACIGLANVEHKFVHVK-----DDWRSKV-----QA--LRENKDK 221 (337)
T ss_dssp HHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECSGGGGGEEEEEEECS-----SSSHHHH-----HH--HHTCCCS
T ss_pred HhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecccccCCceEEEEEeC-----hHHHHHH-----HH--HHhCCCC
Confidence 2334456788999999933 345567765544443333333444333221 1111111 11 1223378
Q ss_pred CcEEEeCCccccc
Q psy496 277 APILHIPGFTYPV 289 (319)
Q Consensus 277 ~~LVFlp~R~~~v 289 (319)
++|||++++..+.
T Consensus 222 ~~lvf~~~~~~~~ 234 (337)
T 2z0m_A 222 GVIVFVRTRNRVA 234 (337)
T ss_dssp SEEEECSCHHHHH
T ss_pred cEEEEEcCHHHHH
Confidence 8999999987653
No 42
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=99.85 E-value=3.3e-22 Score=190.27 Aligned_cols=121 Identities=14% Similarity=-0.008 Sum_probs=87.9
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
+++++|.+++|.+..| ++++++||||||||++++++++..... ..++++++||++|+.|+++++.
T Consensus 21 ~~~~~Q~~~i~~i~~~----------~~~lv~apTGsGKT~~~l~~~~~~~~~-----~~~~lil~Pt~~L~~q~~~~~~ 85 (414)
T 3oiy_A 21 DLTGYQRLWAKRIVQG----------KSFTMVAPTGVGKTTFGMMTALWLARK-----GKKSALVFPTVTLVKQTLERLQ 85 (414)
T ss_dssp CCCHHHHHHHHHHTTT----------CCEECCSCSSSSHHHHHHHHHHHHHTT-----TCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhcC----------CCEEEEeCCCCCHHHHHHHHHHHHhcC-----CCEEEEEECCHHHHHHHHHHHH
Confidence 3568999999988643 568888899999999998888775522 2367777799999999999998
Q ss_pred HHhccccCCCCceEEEEEecccc---------cCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccc
Q psy496 124 QERDEQCGRPGSSVGYQIRLEKE---------LPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHE 185 (319)
Q Consensus 124 ~~~~~~~~~~g~~vg~~~~~~~~---------~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~ 185 (319)
++.. . |..++........ .....++|+|+|||++.+++.. ..+.++++||+||+|.
T Consensus 86 ~~~~--~---~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~-~~~~~~~~iViDEaH~ 150 (414)
T 3oiy_A 86 KLAD--E---KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDA 150 (414)
T ss_dssp HHCC--S---SCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH-HTTCCCSEEEESCHHH
T ss_pred HHcc--C---CceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH-hccccccEEEEeChHh
Confidence 8643 2 4344322211111 0012378999999999888753 4467899999999995
No 43
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.84 E-value=9e-21 Score=183.35 Aligned_cols=137 Identities=21% Similarity=0.200 Sum_probs=97.9
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK 145 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~ 145 (319)
..++++++++||||||||++|++|+++.+...+ .++++++|||+||.|+++++. |..+++......
T Consensus 18 l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~~~----~~~lvl~Ptr~La~Q~~~~l~----------g~~v~~~~~~~~ 83 (459)
T 2z83_A 18 LRKRQMTVLDLHPGSGKTRKILPQIIKDAIQQR----LRTAVLAPTRVVAAEMAEALR----------GLPVRYQTSAVQ 83 (459)
T ss_dssp GSTTCEEEECCCTTSCTTTTHHHHHHHHHHHTT----CCEEEEECSHHHHHHHHHHTT----------TSCEEECC----
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHHHHHHHhCC----CcEEEECchHHHHHHHHHHhc----------CceEeEEecccc
Confidence 445788999999999999999999998876533 467888899999999998775 223333222111
Q ss_pred ccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEeccccC
Q psy496 146 ELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATLN 217 (319)
Q Consensus 146 ~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~~ 217 (319)
........+.++|.+.+.+.+...+.++++++|||||||+++.........+..... .++.|+++||||++
T Consensus 84 ~~~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~-~~~~~~il~SAT~~ 154 (459)
T 2z83_A 84 REHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE-LGEAAAIFMTATPP 154 (459)
T ss_dssp ----CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCT
T ss_pred cCCCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc-cCCccEEEEEcCCC
Confidence 111123457889999999888887889999999999999865444444444444332 35789999999994
No 44
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.83 E-value=2.2e-21 Score=193.48 Aligned_cols=134 Identities=16% Similarity=0.197 Sum_probs=93.7
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecc
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLE 144 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~ 144 (319)
...++++++++||||||||++|++++++. ..++++++|||+||.|+++++.+.++..+ +..+|+
T Consensus 228 ~L~~~~~vlv~ApTGSGKT~a~~l~ll~~--------g~~vLVl~PTReLA~Qia~~l~~~~g~~v---g~~vG~----- 291 (666)
T 3o8b_A 228 VPQSFQVAHLHAPTGSGKSTKVPAAYAAQ--------GYKVLVLNPSVAATLGFGAYMSKAHGIDP---NIRTGV----- 291 (666)
T ss_dssp CCSSCEEEEEECCTTSCTTTHHHHHHHHT--------TCCEEEEESCHHHHHHHHHHHHHHHSCCC---EEECSS-----
T ss_pred HHHcCCeEEEEeCCchhHHHHHHHHHHHC--------CCeEEEEcchHHHHHHHHHHHHHHhCCCe---eEEECc-----
Confidence 34567889999999999999999998762 12677778999999999999988876543 333331
Q ss_pred cccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEeccccC
Q psy496 145 KELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATLN 217 (319)
Q Consensus 145 ~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~~ 217 (319)
.....+.+|+|+|||+|++ .....++++++|||||||+++...+..+..+...........++++|||++
T Consensus 292 -~~~~~~~~IlV~TPGrLl~--~~~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT~~ 361 (666)
T 3o8b_A 292 -RTITTGAPVTYSTYGKFLA--DGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATATPP 361 (666)
T ss_dssp -CEECCCCSEEEEEHHHHHH--TTSCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESSCT
T ss_pred -EeccCCCCEEEECcHHHHh--CCCcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCCCC
Confidence 1123467899999999843 233347889999999999865444333333333332222334778899994
No 45
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.83 E-value=4.6e-21 Score=202.24 Aligned_cols=121 Identities=13% Similarity=-0.019 Sum_probs=88.7
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
+++++|.++||.++. +++++++||||||||++++.+++..+.. ..++++++|||+||.|+++++.
T Consensus 78 ~pt~iQ~~ai~~il~----------g~dvlv~ApTGSGKTl~~l~~il~~~~~-----~~~~Lil~PtreLa~Q~~~~l~ 142 (1104)
T 4ddu_A 78 DLTGYQRLWAKRIVQ----------GKSFTMVAPTGVGKTTFGMMTALWLARK-----GKKSALVFPTVTLVKQTLERLQ 142 (1104)
T ss_dssp CCCHHHHHHHHHHTT----------TCCEEECCSTTCCHHHHHHHHHHHHHTT-----TCCEEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc----------CCCEEEEeCCCCcHHHHHHHHHHHHHhc-----CCeEEEEechHHHHHHHHHHHH
Confidence 467999999999875 3568899999999999888887776522 2367777799999999999998
Q ss_pred HHhccccCCCCceEEEEEecccc---------cCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccc
Q psy496 124 QERDEQCGRPGSSVGYQIRLEKE---------LPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHE 185 (319)
Q Consensus 124 ~~~~~~~~~~g~~vg~~~~~~~~---------~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~ 185 (319)
++. .. +..++........ .....++|+|+|||+|.+++.. ..++++++||+||||.
T Consensus 143 ~l~--~~---~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~-l~~~~l~~lViDEaH~ 207 (1104)
T 4ddu_A 143 KLA--DE---KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK-LSQKRFDFVFVDDVDA 207 (1104)
T ss_dssp TTS--CT---TSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH-HHTSCCSEEEESCHHH
T ss_pred Hhh--CC---CCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh-hcccCcCEEEEeCCCc
Confidence 843 22 4444433222111 0112378999999999888753 3467899999999995
No 46
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.83 E-value=1e-20 Score=188.90 Aligned_cols=149 Identities=19% Similarity=0.165 Sum_probs=105.7
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
..+|+|+.++|.++ ++++++++||||||||++|++|+++.+...+ .++++++|||+||.|+++.+.
T Consensus 171 ~~lpiq~~~i~~l~----------~g~dvlv~a~TGSGKT~~~~lpil~~l~~~~----~~vLvl~PtreLa~Qi~~~l~ 236 (618)
T 2whx_A 171 IGEPDYEVDEDIFR----------KKRLTIMDLHPGAGKTKRILPSIVREALKRR----LRTLILAPTRVVAAEMEEALR 236 (618)
T ss_dssp CCCCCCCCCGGGGS----------TTCEEEECCCTTSSTTTTHHHHHHHHHHHTT----CCEEEEESSHHHHHHHHHHTT
T ss_pred cCCCccccCHHHHh----------cCCeEEEEcCCCCCHHHHHHHHHHHHHHhCC----CeEEEEcChHHHHHHHHHHhc
Confidence 34677777766654 4677888899999999999999998876532 367777799999999997664
Q ss_pred HHhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhcc
Q psy496 124 QERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDK 203 (319)
Q Consensus 124 ~~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~ 203 (319)
+..+++..............+.++|.+.+.+.+...+.++++++|||||||+++...+.....+.... .
T Consensus 237 ----------~~~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l-~ 305 (618)
T 2whx_A 237 ----------GLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRV-E 305 (618)
T ss_dssp ----------TSCEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-H
T ss_pred ----------CCceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHHHHHHHh-c
Confidence 22344333321112223455888999999988877788999999999999986443333333333322 1
Q ss_pred ccCceEEEeccccC
Q psy496 204 RKDLKLILMSATLN 217 (319)
Q Consensus 204 ~~~~qiv~lSAT~~ 217 (319)
.++.|+++||||++
T Consensus 306 ~~~~q~il~SAT~~ 319 (618)
T 2whx_A 306 MGEAAAIFMTATPP 319 (618)
T ss_dssp HTSCEEEEECSSCT
T ss_pred ccCccEEEEECCCc
Confidence 25789999999993
No 47
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=99.82 E-value=3.9e-20 Score=181.53 Aligned_cols=158 Identities=15% Similarity=0.049 Sum_probs=108.0
Q ss_pred cccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHH
Q psy496 43 CCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 43 ~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
.+++++|.++++.++. ++++++++|||||||.+|.+|+++.+.....+...++++++|+++|+.|+.+.+
T Consensus 6 ~~~~~~Q~~~i~~~~~----------~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 75 (556)
T 4a2p_A 6 KKARSYQIELAQPAIN----------GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVF 75 (556)
T ss_dssp --CCHHHHHHHHHHHT----------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc----------CCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3457899999998864 356899999999999999999998876644333457888889999999999999
Q ss_pred HHHhccccCCCCceEEEEEecccccC------CCCceEEEECchHHHHHHhcCC--CCCCccEEEEecccccccchhHHH
Q psy496 123 AQERDEQCGRPGSSVGYQIRLEKELP------RKRGSILYCTAGILPEVMQSDP--ILSGVSHIVMDEIHERSMISDFLL 194 (319)
Q Consensus 123 ~~~~~~~~~~~g~~vg~~~~~~~~~~------~~~~~Iiv~Tpg~ll~~l~~~~--~l~~v~~vViDEah~~~~~~~~~~ 194 (319)
.+.+... +..++... ++.... ..+++|+|+||++|.+++.... .+.++++||+||||...-. ....
T Consensus 76 ~~~~~~~----~~~~~~~~-g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~-~~~~ 149 (556)
T 4a2p_A 76 KHHFERQ----GYSVQGIS-GENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN-HPYN 149 (556)
T ss_dssp HHHHGGG----TCCEEECC-CC-----CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTT-SHHH
T ss_pred HHHhccc----CceEEEEe-CCCCcchhHHHhhCCCCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCc-chHH
Confidence 8876432 22222111 111000 1246799999999999996543 5889999999999974322 1222
Q ss_pred HHHHhhhc-----cccCceEEEecccc
Q psy496 195 AILKDVTD-----KRKDLKLILMSATL 216 (319)
Q Consensus 195 ~~l~~~~~-----~~~~~qiv~lSAT~ 216 (319)
..+..... ..+..++++||||+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~lSAT~ 176 (556)
T 4a2p_A 150 VLMTRYLEQKFNSASQLPQILGLTASV 176 (556)
T ss_dssp HHHHHHHHHHHCC---CCEEEEEESCC
T ss_pred HHHHHHHHhhhcccCCCCeEEEEeCCc
Confidence 22222211 24567999999999
No 48
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=99.81 E-value=3.4e-20 Score=184.39 Aligned_cols=157 Identities=15% Similarity=0.074 Sum_probs=105.2
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
..|.|.++|+.++. ++++++.+|||||||++|.+|++.. ..++++++|+++|+.|..+.+.+
T Consensus 45 ~rp~Q~~~i~~il~----------g~d~lv~~pTGsGKTl~~~lpal~~--------~g~~lVisP~~~L~~q~~~~l~~ 106 (591)
T 2v1x_A 45 FRPLQLETINVTMA----------GKEVFLVMPTGGGKSLCYQLPALCS--------DGFTLVICPLISLMEDQLMVLKQ 106 (591)
T ss_dssp CCTTHHHHHHHHHT----------TCCEEEECCTTSCTTHHHHHHHHTS--------SSEEEEECSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc----------CCCEEEEECCCChHHHHHHHHHHHc--------CCcEEEEeCHHHHHHHHHHHHHh
Confidence 46899999999875 3568889999999999999998752 23788889999999999998877
Q ss_pred HhccccCCCCceEEEEEecccc---------c--CCCCceEEEECchHHH------HHHhcCCCCCCccEEEEecccccc
Q psy496 125 ERDEQCGRPGSSVGYQIRLEKE---------L--PRKRGSILYCTAGILP------EVMQSDPILSGVSHIVMDEIHERS 187 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~~---------~--~~~~~~Iiv~Tpg~ll------~~l~~~~~l~~v~~vViDEah~~~ 187 (319)
. +. .++........ . .....+|+++||++|. +.+.....+.++++|||||||...
T Consensus 107 ~-gi-------~~~~l~~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is 178 (591)
T 2v1x_A 107 L-GI-------SATMLNASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCS 178 (591)
T ss_dssp H-TC-------CEEECCSSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGS
T ss_pred c-CC-------cEEEEeCCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECccccc
Confidence 5 22 22211110000 0 1235789999999774 333332336789999999999732
Q ss_pred c-----chhHHHHHHHhhhccccCceEEEeccccCh---hhHhhhhCCCC
Q psy496 188 M-----ISDFLLAILKDVTDKRKDLKLILMSATLNA---EKFSQFFGGAP 229 (319)
Q Consensus 188 ~-----~~~~~~~~l~~~~~~~~~~qiv~lSAT~~~---~~l~~~l~~~~ 229 (319)
. ..+. ..+..+....++.++++||||++. +++.++++...
T Consensus 179 ~~g~dfr~~~--~~l~~l~~~~~~~~ii~lSAT~~~~v~~~i~~~l~~~~ 226 (591)
T 2v1x_A 179 QWGHDFRPDY--KALGILKRQFPNASLIGLTATATNHVLTDAQKILCIEK 226 (591)
T ss_dssp TTCTTCCGGG--GGGGHHHHHCTTSEEEEEESSCCHHHHHHHHHHTTCCS
T ss_pred ccccccHHHH--HHHHHHHHhCCCCcEEEEecCCCHHHHHHHHHHhCCCC
Confidence 1 1111 111223333457899999999943 46677776443
No 49
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.81 E-value=7.5e-20 Score=175.54 Aligned_cols=135 Identities=16% Similarity=0.173 Sum_probs=94.6
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccccc
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKEL 147 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~ 147 (319)
++++++++||||||||++|++|+++.+...+ .++++++||++||.|+++.+. |..+++........
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~~g----~~~lvl~Pt~~La~Q~~~~~~----------~~~v~~~~~~~~~~ 66 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVKKR----LRTVILAPTRVVASEMYEALR----------GEPIRYMTPAVQSE 66 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHHTT----CCEEEEESSHHHHHHHHHHTT----------TSCEEEC-------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHhCC----CCEEEECcHHHHHHHHHHHhC----------CCeEEEEecCcccc
Confidence 3688999999999999999999997665433 367777799999999987664 22333222211111
Q ss_pred CCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEeccccC
Q psy496 148 PRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATLN 217 (319)
Q Consensus 148 ~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~~ 217 (319)
...+..+.+.|.|.+.+.+.....++++++|||||+|+++...+.....++... .+++.++++||||++
T Consensus 67 ~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~-~~~~~~~l~~SAT~~ 135 (431)
T 2v6i_A 67 RTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRV-SMGDAGAIFMTATPP 135 (431)
T ss_dssp --CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHH-HTTSCEEEEEESSCT
T ss_pred CCCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHh-hCCCCcEEEEeCCCC
Confidence 112345778899999888866777999999999999996554444455555443 235789999999994
No 50
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=99.81 E-value=1.2e-19 Score=177.80 Aligned_cols=159 Identities=16% Similarity=0.062 Sum_probs=111.3
Q ss_pred cccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHH
Q psy496 43 CCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 43 ~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
.+++++|.++++.++. ++++++++|||||||.+|.+|+++.+.....+...++++++|+++|+.|..+.+
T Consensus 3 ~~~~~~Q~~~i~~~~~----------~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~ 72 (555)
T 3tbk_A 3 LKPRNYQLELALPAKK----------GKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVF 72 (555)
T ss_dssp CCCCHHHHHHHHHHHT----------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHhC----------CCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHH
Confidence 4567899999998764 357899999999999999999998887654333457888889999999999999
Q ss_pred HHHhccccCCCCceEEEEEecccccC-----CCCceEEEECchHHHHHHhcCC--CCCCccEEEEecccccccchhHHHH
Q psy496 123 AQERDEQCGRPGSSVGYQIRLEKELP-----RKRGSILYCTAGILPEVMQSDP--ILSGVSHIVMDEIHERSMISDFLLA 195 (319)
Q Consensus 123 ~~~~~~~~~~~g~~vg~~~~~~~~~~-----~~~~~Iiv~Tpg~ll~~l~~~~--~l~~v~~vViDEah~~~~~~~~~~~ 195 (319)
.+.+... +..++.......... ..+.+|+|+||+++.+.+.... .+.++++||+||||...-.. ....
T Consensus 73 ~~~~~~~----~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~-~~~~ 147 (555)
T 3tbk_A 73 SRYFERL----GYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNH-PYNQ 147 (555)
T ss_dssp HHHHHTT----TCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTC-HHHH
T ss_pred HHHhccC----CcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcc-hHHH
Confidence 8876432 333332221111111 0236799999999999996543 58899999999999843221 1222
Q ss_pred HHHhhhc------cccCceEEEecccc
Q psy496 196 ILKDVTD------KRKDLKLILMSATL 216 (319)
Q Consensus 196 ~l~~~~~------~~~~~qiv~lSAT~ 216 (319)
.+..... ..+..+++++|||+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~l~lSAT~ 174 (555)
T 3tbk_A 148 IMFRYLDHKLGESRDPLPQVVGLTASV 174 (555)
T ss_dssp HHHHHHHHHTSSCCSCCCEEEEEESCC
T ss_pred HHHHHHHhhhccccCCCCeEEEEecCc
Confidence 2222211 12567999999999
No 51
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.80 E-value=9.7e-20 Score=183.28 Aligned_cols=155 Identities=17% Similarity=0.141 Sum_probs=104.4
Q ss_pred ccccccc-----cchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHH
Q psy496 44 CIMVTQP-----RRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAI 118 (319)
Q Consensus 44 ~~~~~Q~-----~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~ 118 (319)
.++++|+ .+||.++. ......+++++++||||||||++|++|+++.+...+ .++++++|||+||.|+
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~----~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~~~----~~~lilaPTr~La~Q~ 286 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYN----PEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQKR----LRTAVLAPTRVVAAEM 286 (673)
T ss_dssp EEEEEECC-------CCCCC----GGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHHTT----CCEEEEESSHHHHHHH
T ss_pred ccCceeeccccccchHHHhh----HHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhCC----CcEEEEccHHHHHHHH
Confidence 4678999 89998763 233446789999999999999999999998876533 3677777999999999
Q ss_pred HHHHHHHhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHH
Q psy496 119 AERVAQERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILK 198 (319)
Q Consensus 119 ~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~ 198 (319)
++.+..+ .+++.............-+-+.+.+.+.+.+.....++++++|||||+|+++...+.....+.
T Consensus 287 ~~~l~~~----------~i~~~~~~l~~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~ 356 (673)
T 2wv9_A 287 AEALRGL----------PVRYLTPAVQREHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIA 356 (673)
T ss_dssp HHHTTTS----------CCEECCC---CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHH
T ss_pred HHHHhcC----------CeeeecccccccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCcccCccHHHHHHHHH
Confidence 9877532 122211110101111233556677777777766677999999999999996544444444444
Q ss_pred hhhccccCceEEEeccccC
Q psy496 199 DVTDKRKDLKLILMSATLN 217 (319)
Q Consensus 199 ~~~~~~~~~qiv~lSAT~~ 217 (319)
.... +++.|+++||||++
T Consensus 357 ~~~~-~~~~~vl~~SAT~~ 374 (673)
T 2wv9_A 357 TRVE-AGEAAAIFMTATPP 374 (673)
T ss_dssp HHHH-TTSCEEEEECSSCT
T ss_pred Hhcc-ccCCcEEEEcCCCC
Confidence 4432 24679999999993
No 52
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.80 E-value=5e-19 Score=180.43 Aligned_cols=211 Identities=19% Similarity=0.171 Sum_probs=132.5
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
++++.|.++|+.+..+.. .....+++++||||||||+++++|++..+..+. ++++++||++||.|+++.+.
T Consensus 368 ~lt~~Q~~ai~~I~~~l~----~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~-----qvlvlaPtr~La~Q~~~~l~ 438 (780)
T 1gm5_A 368 KLTNAQKRAHQEIRNDMI----SEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGF-----QTAFMVPTSILAIQHYRRTV 438 (780)
T ss_dssp CCCHHHHHHHHHHHHHHH----SSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTS-----CEEEECSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhhcc----ccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCC-----eEEEEeCcHHHHHHHHHHHH
Confidence 567899999999887532 334468999999999999999999998876533 67777899999999999999
Q ss_pred HHhccccCCCCceEEEEEecccc---------cCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHH
Q psy496 124 QERDEQCGRPGSSVGYQIRLEKE---------LPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLL 194 (319)
Q Consensus 124 ~~~~~~~~~~g~~vg~~~~~~~~---------~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~ 194 (319)
+.+... |..++........ ......+|+|+||+.+.+ ...+.+++++|+||+|+.+...
T Consensus 439 ~~~~~~----gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~----~~~~~~l~lVVIDEaHr~g~~q---- 506 (780)
T 1gm5_A 439 ESFSKF----NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE----DVHFKNLGLVIIDEQHRFGVKQ---- 506 (780)
T ss_dssp HHHTCS----SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH----CCCCSCCCEEEEESCCCC--------
T ss_pred HHhhhc----CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh----hhhccCCceEEecccchhhHHH----
Confidence 887532 3333321111100 011247899999997754 4458899999999999854321
Q ss_pred HHHHhhhccccCceEEEeccccChhhHhh-hhCCCCEEEeCC---ccccceeeeehhhhhhhhhhHHHHHHHHhhhhhhh
Q psy496 195 AILKDVTDKRKDLKLILMSATLNAEKFSQ-FFGGAPILHIPG---FTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEKF 270 (319)
Q Consensus 195 ~~l~~~~~~~~~~qiv~lSAT~~~~~l~~-~l~~~~~i~~~~---r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (319)
...+.....+.++++||||+.++.++. ++++.....++. ...|+...+.... . ... +.....+. +
T Consensus 507 --r~~l~~~~~~~~vL~mSATp~p~tl~~~~~g~~~~s~i~~~p~~r~~i~~~~~~~~----~--~~~-l~~~i~~~--l 575 (780)
T 1gm5_A 507 --REALMNKGKMVDTLVMSATPIPRSMALAFYGDLDVTVIDEMPPGRKEVQTMLVPMD----R--VNE-VYEFVRQE--V 575 (780)
T ss_dssp ---CCCCSSSSCCCEEEEESSCCCHHHHHHHTCCSSCEEECCCCSSCCCCEECCCCSS----T--HHH-HHHHHHHH--T
T ss_pred --HHHHHHhCCCCCEEEEeCCCCHHHHHHHHhCCcceeeeeccCCCCcceEEEEeccc----h--HHH-HHHHHHHH--H
Confidence 122233345679999999996666654 455444333332 2235554443321 1 111 11111111 1
Q ss_pred ccccCCCcEEEeCCcccc
Q psy496 271 SQFFGGAPILHIPGFTYP 288 (319)
Q Consensus 271 ~~~~~g~~LVFlp~R~~~ 288 (319)
..+++++||+|.....
T Consensus 576 --~~g~qvlVf~~~ie~s 591 (780)
T 1gm5_A 576 --MRGGQAFIVYPLIEES 591 (780)
T ss_dssp --TTSCCBCCBCCCC---
T ss_pred --hcCCcEEEEecchhhh
Confidence 1278999999986553
No 53
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.78 E-value=1.1e-18 Score=167.92 Aligned_cols=136 Identities=20% Similarity=0.117 Sum_probs=89.2
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccc
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKE 146 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~ 146 (319)
.++++++++||||||||++|++|+++.+...+ .++++++||++||.|+++.+... .+++.......
T Consensus 6 ~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~~----~~~lil~Ptr~La~Q~~~~l~~~----------~v~~~~~~~~~ 71 (440)
T 1yks_A 6 KKGMTTVLDFHPGAGKTRRFLPQILAECARRR----LRTLVLAPTRVVLSEMKEAFHGL----------DVKFHTQAFSA 71 (440)
T ss_dssp STTCEEEECCCTTSSTTTTHHHHHHHHHHHTT----CCEEEEESSHHHHHHHHHHTTTS----------CEEEESSCCCC
T ss_pred hCCCCEEEEcCCCCCHHHHHHHHHHHHHHhcC----CeEEEEcchHHHHHHHHHHHhcC----------CeEEeccccee
Confidence 46789999999999999999999998776543 36677779999999999877522 23322211000
Q ss_pred cCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEeccccC
Q psy496 147 LPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATLN 217 (319)
Q Consensus 147 ~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~~ 217 (319)
......-+-..+.+.+...+.....+++++++|+||+|+++...+.....+..+.. .++.|+++||||++
T Consensus 72 v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~-~~~~~~l~~SAT~~ 141 (440)
T 1yks_A 72 HGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRAR-ANESATILMTATPP 141 (440)
T ss_dssp CCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHH-TTSCEEEEECSSCT
T ss_pred ccCCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhc-cCCceEEEEeCCCC
Confidence 11011123334445555555556668999999999999853333333344444332 34679999999993
No 54
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=99.78 E-value=1.1e-18 Score=176.49 Aligned_cols=159 Identities=16% Similarity=0.089 Sum_probs=110.7
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
+++.|.++++.++. ++++++++|||||||+++.+|+++.+.....+...++++++||++|+.|..+.+.+
T Consensus 14 lr~~Q~~~i~~~l~----------g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~ 83 (696)
T 2ykg_A 14 PRNYQLELALPAMK----------GKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSK 83 (696)
T ss_dssp CCHHHHHHHHHHHT----------TCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHc----------CCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHH
Confidence 56889999988764 46799999999999999999999887665433335788888999999999998888
Q ss_pred HhccccCCCCceEEEEEecccccC-----CCCceEEEECchHHHHHHhcCC--CCCCccEEEEecccccccchh---HHH
Q psy496 125 ERDEQCGRPGSSVGYQIRLEKELP-----RKRGSILYCTAGILPEVMQSDP--ILSGVSHIVMDEIHERSMISD---FLL 194 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~~~~-----~~~~~Iiv~Tpg~ll~~l~~~~--~l~~v~~vViDEah~~~~~~~---~~~ 194 (319)
.+... +..++.......... ..+.+|+|+|||+|.+.+..+. .+.++++||+||||+..-... ...
T Consensus 84 ~~~~~----~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~ 159 (696)
T 2ykg_A 84 YFERH----GYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159 (696)
T ss_dssp HTTTT----TCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HhccC----CceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHH
Confidence 76432 333432221111100 0246899999999999996553 488999999999998332211 111
Q ss_pred HHHHh-hh-ccccCceEEEeccccC
Q psy496 195 AILKD-VT-DKRKDLKLILMSATLN 217 (319)
Q Consensus 195 ~~l~~-~~-~~~~~~qiv~lSAT~~ 217 (319)
..+.. +. ...+..++++||||+.
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~ 184 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVG 184 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccc
Confidence 11211 11 1235679999999994
No 55
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=99.78 E-value=1.6e-19 Score=177.29 Aligned_cols=207 Identities=16% Similarity=0.103 Sum_probs=124.7
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
..+.|.++|+.+..| +++++.+|||||||++|.+|++.. . ..+++++|+++|+.|..+.+..
T Consensus 26 ~r~~Q~~~i~~il~g----------~d~lv~apTGsGKTl~~~lp~l~~---~-----g~~lvi~P~~aL~~q~~~~l~~ 87 (523)
T 1oyw_A 26 FRPGQEEIIDTVLSG----------RDCLVVMPTGGGKSLCYQIPALLL---N-----GLTVVVSPLISLMKDQVDQLQA 87 (523)
T ss_dssp CCTTHHHHHHHHHTT----------CCEEEECSCHHHHHHHHHHHHHHS---S-----SEEEEECSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHcC----------CCEEEECCCCcHHHHHHHHHHHHh---C-----CCEEEECChHHHHHHHHHHHHH
Confidence 468899999998754 468889999999999999998743 1 3688888999999999988876
Q ss_pred HhccccCCCCceEEEEEeccc---------ccCCCCceEEEECchHHHHHH-hcCCCCCCccEEEEeccccccc---chh
Q psy496 125 ERDEQCGRPGSSVGYQIRLEK---------ELPRKRGSILYCTAGILPEVM-QSDPILSGVSHIVMDEIHERSM---ISD 191 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~---------~~~~~~~~Iiv~Tpg~ll~~l-~~~~~l~~v~~vViDEah~~~~---~~~ 191 (319)
. |..+........ .......+|+++||+++.... .......++++|||||||...- ...
T Consensus 88 ~--------gi~~~~l~~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr 159 (523)
T 1oyw_A 88 N--------GVAAACLNSTQTREQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFR 159 (523)
T ss_dssp T--------TCCEEEECTTSCHHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCC
T ss_pred c--------CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccH
Confidence 4 222221111100 000124679999999985321 1111236899999999997321 111
Q ss_pred HHHHHHHhhhccccCceEEEeccccCh---hhHhhhhC-CCCEEEeCCccccceeeeehhhhhhhhhhHHHHHHHHhhhh
Q psy496 192 FLLAILKDVTDKRKDLKLILMSATLNA---EKFSQFFG-GAPILHIPGFTYPVQEYYLEDVLNMTRKDLKLILMSATLNA 267 (319)
Q Consensus 192 ~~~~~l~~~~~~~~~~qiv~lSAT~~~---~~l~~~l~-~~~~i~~~~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (319)
.....+..+....++.+++++|||++. +++.++++ ..+.+.+.+...|. ..|.-.. . ...... +...
T Consensus 160 ~~~~~l~~l~~~~~~~~~i~lSAT~~~~~~~~i~~~l~~~~~~~~~~~~~r~~-l~~~v~~--~-~~~~~~-l~~~---- 230 (523)
T 1oyw_A 160 PEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISSFDRPN-IRYMLME--K-FKPLDQ-LMRY---- 230 (523)
T ss_dssp HHHHGGGGHHHHCTTSCEEEEESCCCHHHHHHHHHHHTCCSCEEEECCCCCTT-EEEEEEE--C-SSHHHH-HHHH----
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCCCCHHHHHHHHHHhCCCCCeEEeCCCCCCc-eEEEEEe--C-CCHHHH-HHHH----
Confidence 122233333344457899999999943 46777775 34444444333332 2222111 0 111111 1111
Q ss_pred hhhccccCCCcEEEeCCcccc
Q psy496 268 EKFSQFFGGAPILHIPGFTYP 288 (319)
Q Consensus 268 ~~~~~~~~g~~LVFlp~R~~~ 288 (319)
+....++++|||+++|..+
T Consensus 231 --l~~~~~~~~IVf~~sr~~~ 249 (523)
T 1oyw_A 231 --VQEQRGKSGIIYCNSRAKV 249 (523)
T ss_dssp --HHHTTTCCEEEECSSHHHH
T ss_pred --HHhcCCCcEEEEeCCHHHH
Confidence 1111367899999999765
No 56
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.78 E-value=7.7e-20 Score=157.91 Aligned_cols=157 Identities=18% Similarity=0.071 Sum_probs=98.2
Q ss_pred ccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhC-CCCccEEEEecccHHHHHH-HH
Q psy496 42 ECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARN-RGSECCIMVTQPRRISAIA-IA 119 (319)
Q Consensus 42 ~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~-~~~~~~vl~~~Ptr~la~q-~~ 119 (319)
..++.+.|.++++.+.. ++++++++|||||||.++.+++++.+.... .....++++++|+++|+.| ..
T Consensus 31 ~~~l~~~Q~~~i~~~~~----------~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~ 100 (216)
T 3b6e_A 31 ELQLRPYQMEVAQPALE----------GKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFR 100 (216)
T ss_dssp CCCCCHHHHHHHHHHHT----------TCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHhc----------CCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHH
Confidence 34567889999987764 367999999999999999999987765422 1123467777799999999 55
Q ss_pred HHHHHHhccccCCCCceEEEEEecccccC------CCCceEEEECchHHHHHHhcC-------CCCCCccEEEEeccccc
Q psy496 120 ERVAQERDEQCGRPGSSVGYQIRLEKELP------RKRGSILYCTAGILPEVMQSD-------PILSGVSHIVMDEIHER 186 (319)
Q Consensus 120 ~~~~~~~~~~~~~~g~~vg~~~~~~~~~~------~~~~~Iiv~Tpg~ll~~l~~~-------~~l~~v~~vViDEah~~ 186 (319)
+.+.+.... +..++... .+.... ....+|+|+||+++.+.+... ..+.++++||+||||..
T Consensus 101 ~~~~~~~~~-----~~~v~~~~-g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~ 174 (216)
T 3b6e_A 101 KEFQPFLKK-----WYRVIGLS-GDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHT 174 (216)
T ss_dssp HTHHHHHTT-----TSCEEECC-C---CCCCHHHHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC---
T ss_pred HHHHHHhcc-----CceEEEEe-CCcccchhHHhhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhh
Confidence 656555432 11222110 111000 013679999999999988553 34789999999999973
Q ss_pred ccchhHHHHHHHhhhc--------------cccCceEEEeccc
Q psy496 187 SMISDFLLAILKDVTD--------------KRKDLKLILMSAT 215 (319)
Q Consensus 187 ~~~~~~~~~~l~~~~~--------------~~~~~qiv~lSAT 215 (319)
. ...+....+..+.. ..+..++++||||
T Consensus 175 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 175 N-KEAVYNNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred c-cCCcHHHHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 2 11122222222211 1156799999998
No 57
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.76 E-value=1.6e-18 Score=178.15 Aligned_cols=158 Identities=14% Similarity=0.046 Sum_probs=110.0
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
+++++|.++++.+.. ++++++++|||||||.+|.+|+++.+.....+...++++++|+++|+.|..+.+.
T Consensus 248 ~l~~~Q~~~i~~~l~----------~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~ 317 (797)
T 4a2q_A 248 KARSYQIELAQPAIN----------GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFK 317 (797)
T ss_dssp CCCHHHHHHHHHHHT----------TCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh----------CCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHH
Confidence 356889999888754 3568999999999999999999988876543334578888899999999999998
Q ss_pred HHhccccCCCCceEEEEEeccccc-----CCCCceEEEECchHHHHHHhcCC--CCCCccEEEEecccccccchhHHHHH
Q psy496 124 QERDEQCGRPGSSVGYQIRLEKEL-----PRKRGSILYCTAGILPEVMQSDP--ILSGVSHIVMDEIHERSMISDFLLAI 196 (319)
Q Consensus 124 ~~~~~~~~~~g~~vg~~~~~~~~~-----~~~~~~Iiv~Tpg~ll~~l~~~~--~l~~v~~vViDEah~~~~~~~~~~~~ 196 (319)
+.+... +..++......... ...+++|+|+||++|.+.+.... .+.++++||+||||...... ....+
T Consensus 318 ~~~~~~----~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~-~~~~i 392 (797)
T 4a2q_A 318 HHFERQ----GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH-PYNVL 392 (797)
T ss_dssp HHHGGG----TCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTS-HHHHH
T ss_pred HhcccC----CceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCc-cHHHH
Confidence 876432 22232111111000 01256799999999999996543 47899999999999743222 22333
Q ss_pred HHhhhc-----cccCceEEEecccc
Q psy496 197 LKDVTD-----KRKDLKLILMSATL 216 (319)
Q Consensus 197 l~~~~~-----~~~~~qiv~lSAT~ 216 (319)
+..+.. ..+..++++||||+
T Consensus 393 ~~~~~~~~~~~~~~~~~~l~lSATp 417 (797)
T 4a2q_A 393 MTRYLEQKFNSASQLPQILGLTASV 417 (797)
T ss_dssp HHHHHHHHHTTCCCCCEEEEEESCC
T ss_pred HHHHHHHhhccCCCCCeEEEEcCCc
Confidence 222221 24567999999999
No 58
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.76 E-value=1.1e-17 Score=177.50 Aligned_cols=211 Identities=16% Similarity=0.136 Sum_probs=130.9
Q ss_pred cccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHH
Q psy496 43 CCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 43 ~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
.+.++.|.++|+.+..... .....+++++||||||||++++.+++..+..+ .++++++||++||.|.++.+
T Consensus 602 ~~~t~~Q~~ai~~il~~~~----~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g-----~~vlvlvPt~~La~Q~~~~~ 672 (1151)
T 2eyq_A 602 FETTPDQAQAINAVLSDMC----QPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNH-----KQVAVLVPTTLLAQQHYDNF 672 (1151)
T ss_dssp SCCCHHHHHHHHHHHHHHH----SSSCCEEEEECCCCTTTHHHHHHHHHHHHTTT-----CEEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHh----cCCcCcEEEECCCCCCHHHHHHHHHHHHHHhC-----CeEEEEechHHHHHHHHHHH
Confidence 3457999999998876322 22234899999999999999998887765432 27888889999999999999
Q ss_pred HHHhccccCCCCceEEEEEecccc---------cCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHH
Q psy496 123 AQERDEQCGRPGSSVGYQIRLEKE---------LPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFL 193 (319)
Q Consensus 123 ~~~~~~~~~~~g~~vg~~~~~~~~---------~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~ 193 (319)
.+.+... +..++........ ....+.+|+|+||+.+ .....++++++||+||+|+.+...
T Consensus 673 ~~~~~~~----~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll----~~~~~~~~l~lvIiDEaH~~g~~~--- 741 (1151)
T 2eyq_A 673 RDRFANW----PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLL----QSDVKFKDLGLLIVDEEHRFGVRH--- 741 (1151)
T ss_dssp HHHSTTT----TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHH----HSCCCCSSEEEEEEESGGGSCHHH---
T ss_pred HHHhhcC----CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHH----hCCccccccceEEEechHhcChHH---
Confidence 8876532 3334322211110 0112478999999855 344568899999999999854322
Q ss_pred HHHHHhhhccccCceEEEeccccChhhHhhhhCCCCEEE-eC---CccccceeeeehhhhhhhhhhHHHHHHHHhhhhhh
Q psy496 194 LAILKDVTDKRKDLKLILMSATLNAEKFSQFFGGAPILH-IP---GFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEK 269 (319)
Q Consensus 194 ~~~l~~~~~~~~~~qiv~lSAT~~~~~l~~~l~~~~~i~-~~---~r~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (319)
...++. ..++.++++||||+.++.+...+....-.. +. ....++..++.... .......+ ...
T Consensus 742 ~~~l~~---l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~~r~~i~~~~~~~~----~~~i~~~i----l~~-- 808 (1151)
T 2eyq_A 742 KERIKA---MRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARRLAVKTFVREYD----SMVVREAI----LRE-- 808 (1151)
T ss_dssp HHHHHH---HHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCCBCBCEEEEEEECC----HHHHHHHH----HHH--
T ss_pred HHHHHH---hcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCCCccccEEEEecCC----HHHHHHHH----HHH--
Confidence 222232 334679999999996665555444332222 21 12234444433221 11111111 111
Q ss_pred hccccCCCcEEEeCCcccc
Q psy496 270 FSQFFGGAPILHIPGFTYP 288 (319)
Q Consensus 270 ~~~~~~g~~LVFlp~R~~~ 288 (319)
.. .+++++||++++..+
T Consensus 809 l~--~g~qvlvf~~~v~~~ 825 (1151)
T 2eyq_A 809 IL--RGGQVYYLYNDVENI 825 (1151)
T ss_dssp HT--TTCEEEEECCCSSCH
T ss_pred Hh--cCCeEEEEECCHHHH
Confidence 11 278999999998654
No 59
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.76 E-value=1.2e-19 Score=191.13 Aligned_cols=148 Identities=18% Similarity=0.111 Sum_probs=101.7
Q ss_pred cccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHh
Q psy496 47 VTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQER 126 (319)
Q Consensus 47 ~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~ 126 (319)
++|.++||.++.| ++++++||||||||+ |.+|++..+...+ .++++++|||+||.|+++.+.+..
T Consensus 59 ~iQ~~ai~~il~g----------~dvlv~apTGSGKTl-~~lp~l~~~~~~~----~~~lil~PtreLa~Q~~~~l~~l~ 123 (1054)
T 1gku_B 59 AIQKMWAKRILRK----------ESFAATAPTGVGKTS-FGLAMSLFLALKG----KRCYVIFPTSLLVIQAAETIRKYA 123 (1054)
T ss_dssp HHHHHHHHHHHTT----------CCEECCCCBTSCSHH-HHHHHHHHHHTTS----CCEEEEESCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC----------CCEEEEcCCCCCHHH-HHHHHHHHHhhcC----CeEEEEeccHHHHHHHHHHHHHHH
Confidence 8999999998764 568888889999998 8888887765432 366777799999999999998876
Q ss_pred ccccCCCCc----eEEEEEecccc-------cCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHH
Q psy496 127 DEQCGRPGS----SVGYQIRLEKE-------LPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLA 195 (319)
Q Consensus 127 ~~~~~~~g~----~vg~~~~~~~~-------~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~ 195 (319)
... +. .++........ ....+++|+|+|||+|++++.. ++++++||+||||+..-....+..
T Consensus 124 ~~~----~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~~~IlV~TP~~L~~~l~~---L~~l~~lViDEah~~l~~~~~~~~ 196 (1054)
T 1gku_B 124 EKA----GVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRE---LGHFDFIFVDDVDAILKASKNVDK 196 (1054)
T ss_dssp TTT----CCSGGGSEEECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHHCSTT---SCCCSEEEESCHHHHHTSTHHHHH
T ss_pred hhc----CCCccceEEEEeCCCChhhHHHHHhhccCCCEEEEcHHHHHHHHHH---hccCCEEEEeChhhhhhccccHHH
Confidence 432 22 23211111000 0001278999999999998865 779999999999973222222333
Q ss_pred HHHhhh--------ccccCceEEEecccc
Q psy496 196 ILKDVT--------DKRKDLKLILMSATL 216 (319)
Q Consensus 196 ~l~~~~--------~~~~~~qiv~lSAT~ 216 (319)
.++.+. ..++..|++++|||+
T Consensus 197 i~~~lgf~~~~~~~~~~~~~q~~l~SAT~ 225 (1054)
T 1gku_B 197 LLHLLGFHYDLKTKSWVGEARGCLMVSTA 225 (1054)
T ss_dssp HHHHTTEEEETTTTEEEECCSSEEEECCC
T ss_pred HHHHhCcchhhhhhhcccCCceEEEEecC
Confidence 333331 113467899999999
No 60
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.74 E-value=6.3e-18 Score=152.93 Aligned_cols=147 Identities=12% Similarity=0.005 Sum_probs=99.3
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
++.+.|.++++.+..+ .+.++++|||||||.++..++...+.. + ..++++++|+++|+.|..+++.
T Consensus 113 ~l~~~Q~~ai~~~l~~----------~~~ll~~~tGsGKT~~~~~~~~~~~~~-~---~~~~lil~Pt~~L~~q~~~~l~ 178 (282)
T 1rif_A 113 EPHWYQKDAVFEGLVN----------RRRILNLPTSAGRSLIQALLARYYLEN-Y---EGKILIIVPTTALTTQMADDFV 178 (282)
T ss_dssp CCCHHHHHHHHHHHHH----------SEEEECCCTTSCHHHHHHHHHHHHHHH-C---SSEEEEECSSHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHhc----------CCeEEEcCCCCCcHHHHHHHHHHHHHc-C---CCeEEEEECCHHHHHHHHHHHH
Confidence 4557799998877653 346789999999999998877765543 2 2378888899999999999998
Q ss_pred HHhccccCCCCceEEEEEecccccC---CCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhh
Q psy496 124 QERDEQCGRPGSSVGYQIRLEKELP---RKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDV 200 (319)
Q Consensus 124 ~~~~~~~~~~g~~vg~~~~~~~~~~---~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~ 200 (319)
+..... +..++. +..+.... ..+.+|+|+||+.+.+... ..+.++++||+||||.. ....+. ..+
T Consensus 179 ~~~~~~----~~~~~~-~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~--~~~~~~~~vIiDEaH~~--~~~~~~---~il 246 (282)
T 1rif_A 179 DYRLFS----HAMIKK-IGGGASKDDKYKNDAPVVVGTWQTVVKQPK--EWFSQFGMMMNDECHLA--TGKSIS---SII 246 (282)
T ss_dssp HHTSCC----GGGEEE-CSTTCSSTTCCCTTCSEEEECHHHHTTSCG--GGGGGEEEEEEETGGGC--CHHHHH---HHT
T ss_pred Hhcccc----cceEEE-EeCCCcchhhhccCCcEEEEchHHHHhhHH--HHHhhCCEEEEECCccC--CcccHH---HHH
Confidence 764321 112221 11111111 1457899999998765422 24678999999999983 333222 223
Q ss_pred hccccCceEEEecccc
Q psy496 201 TDKRKDLKLILMSATL 216 (319)
Q Consensus 201 ~~~~~~~qiv~lSAT~ 216 (319)
....+..+++++|||+
T Consensus 247 ~~~~~~~~~l~lSATp 262 (282)
T 1rif_A 247 SGLNNCMFKFGLSGSL 262 (282)
T ss_dssp TTCTTCCEEEEECSSC
T ss_pred HHhhcCCeEEEEeCCC
Confidence 3344577999999999
No 61
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.72 E-value=3.1e-18 Score=163.87 Aligned_cols=159 Identities=16% Similarity=0.102 Sum_probs=108.0
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
+.+.|.++++.+..+ ++++++|||+|||.++..+++..+... ..++++++|+++|+.|..+.+.+
T Consensus 10 l~~~Q~~~i~~~~~~-----------~~ll~~~tG~GKT~~~~~~~~~~~~~~----~~~~liv~P~~~L~~q~~~~~~~ 74 (494)
T 1wp9_A 10 PRIYQEVIYAKCKET-----------NCLIVLPTGLGKTLIAMMIAEYRLTKY----GGKVLMLAPTKPLVLQHAESFRR 74 (494)
T ss_dssp CCHHHHHHHHHGGGS-----------CEEEECCTTSCHHHHHHHHHHHHHHHS----CSCEEEECSSHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhhC-----------CEEEEcCCCCCHHHHHHHHHHHHHhcC----CCeEEEEECCHHHHHHHHHHHHH
Confidence 457788888766542 799999999999999999988876522 24788888999999999999998
Q ss_pred HhccccCCCCceEEEEEecccc----cCCCCceEEEECchHHHHHHhcCC-CCCCccEEEEecccccccchhHHHHHHHh
Q psy496 125 ERDEQCGRPGSSVGYQIRLEKE----LPRKRGSILYCTAGILPEVMQSDP-ILSGVSHIVMDEIHERSMISDFLLAILKD 199 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~~----~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vViDEah~~~~~~~~~~~~l~~ 199 (319)
.++.. +..++........ ....+.+|+|+||+.+.+.+.... .+.++++||+||||...- ........+.
T Consensus 75 ~~~~~----~~~v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~-~~~~~~~~~~ 149 (494)
T 1wp9_A 75 LFNLP----PEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVG-NYAYVFIARE 149 (494)
T ss_dssp HBCSC----GGGEEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCST-TCHHHHHHHH
T ss_pred HhCcc----hhheEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCC-CCcHHHHHHH
Confidence 86531 1122211111000 001245799999999999885443 488999999999997321 1122233344
Q ss_pred hhccccCceEEEecccc--ChhhHhh
Q psy496 200 VTDKRKDLKLILMSATL--NAEKFSQ 223 (319)
Q Consensus 200 ~~~~~~~~qiv~lSAT~--~~~~l~~ 223 (319)
+....+..++++||||+ +.+.+.+
T Consensus 150 ~~~~~~~~~~l~lTaTp~~~~~~~~~ 175 (494)
T 1wp9_A 150 YKRQAKNPLVIGLTASPGSTPEKIME 175 (494)
T ss_dssp HHHHCSSCCEEEEESCSCSSHHHHHH
T ss_pred HHhcCCCCeEEEEecCCCCCcHHHHH
Confidence 43344567899999999 4444444
No 62
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.72 E-value=7.9e-18 Score=175.64 Aligned_cols=159 Identities=14% Similarity=0.040 Sum_probs=108.2
Q ss_pred cccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHH
Q psy496 43 CCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 43 ~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
.++++.|.++++.++. ++++++++|||||||.++.+|+++.+.....+...++++++|+++|+.|..+.+
T Consensus 247 ~~~r~~Q~~ai~~il~----------g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~ 316 (936)
T 4a2w_A 247 KKARSYQIELAQPAIN----------GKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVF 316 (936)
T ss_dssp -CCCHHHHHHHHHHHT----------TCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc----------CCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 3456889999888754 356899999999999999999988765543222457888889999999999999
Q ss_pred HHHhccccCCCCceEEEEEecccccC-----CCCceEEEECchHHHHHHhcCC--CCCCccEEEEecccccccchhHHHH
Q psy496 123 AQERDEQCGRPGSSVGYQIRLEKELP-----RKRGSILYCTAGILPEVMQSDP--ILSGVSHIVMDEIHERSMISDFLLA 195 (319)
Q Consensus 123 ~~~~~~~~~~~g~~vg~~~~~~~~~~-----~~~~~Iiv~Tpg~ll~~l~~~~--~l~~v~~vViDEah~~~~~~~~~~~ 195 (319)
.+.+... +..++.......... ..+.+|+|+||++|.+.+.... .+.++++||+||||...-.. ....
T Consensus 317 ~~~~~~~----~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~-~~~~ 391 (936)
T 4a2w_A 317 KHHFERQ----GYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNH-PYNV 391 (936)
T ss_dssp HHHHHTT----TCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTC-HHHH
T ss_pred HHHhccc----CceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCc-cHHH
Confidence 8876432 222221111110000 1245799999999999996543 47889999999999733221 2233
Q ss_pred HHHhhhc-----cccCceEEEecccc
Q psy496 196 ILKDVTD-----KRKDLKLILMSATL 216 (319)
Q Consensus 196 ~l~~~~~-----~~~~~qiv~lSAT~ 216 (319)
.+..+.. ..+..++++||||+
T Consensus 392 i~~~~~~~~~~~~~~~~~~l~LSATp 417 (936)
T 4a2w_A 392 LMTRYLEQKFNSASQLPQILGLTASV 417 (936)
T ss_dssp HHHHHHHHHHTTCSCCCEEEEEESCC
T ss_pred HHHHHHHHhhccCCCcCeEEEecCCc
Confidence 3322222 24567999999999
No 63
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.70 E-value=3.8e-17 Score=159.45 Aligned_cols=148 Identities=11% Similarity=0.019 Sum_probs=101.4
Q ss_pred cccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHH
Q psy496 43 CCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 43 ~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
.++++.|.++++.+..+ .+++++||||||||+++..++...+.... .++++++|+++|+.|..+++
T Consensus 112 ~~l~~~Q~~ai~~~~~~----------~~~ll~~~tGsGKT~~~~~~~~~~~~~~~----~~vlvl~P~~~L~~Q~~~~~ 177 (510)
T 2oca_A 112 IEPHWYQKDAVFEGLVN----------RRRILNLPTSAGRSLIQALLARYYLENYE----GKILIIVPTTALTTQMADDF 177 (510)
T ss_dssp ECCCHHHHHHHHHHHHH----------SEEEEECCSTTTHHHHHHHHHHHHHHHCS----SEEEEEESSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhc----------CCcEEEeCCCCCHHHHHHHHHHHHHhCCC----CeEEEEECcHHHHHHHHHHH
Confidence 35678999999988764 45899999999999999998887665322 37788889999999999999
Q ss_pred HHHhccccCCCCceEEEEEeccccc---CCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHh
Q psy496 123 AQERDEQCGRPGSSVGYQIRLEKEL---PRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKD 199 (319)
Q Consensus 123 ~~~~~~~~~~~g~~vg~~~~~~~~~---~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~ 199 (319)
.+..... +..++. +..+... .....+|+|+||+.+.+. ....+.++++||+||+|..+ .......
T Consensus 178 ~~~~~~~----~~~v~~-~~~~~~~~~~~~~~~~I~i~T~~~l~~~--~~~~~~~~~liIiDE~H~~~--~~~~~~i--- 245 (510)
T 2oca_A 178 VDYRLFS----HAMIKK-IGGGASKDDKYKNDAPVVVGTWQTVVKQ--PKEWFSQFGMMMNDECHLAT--GKSISSI--- 245 (510)
T ss_dssp HHTTSSC----GGGEEE-CGGGCCTTGGGCTTCSEEEEEHHHHTTS--CGGGGGGEEEEEEETGGGCC--HHHHHHH---
T ss_pred HHhhcCC----ccceEE-EecCCccccccccCCcEEEEeHHHHhhc--hhhhhhcCCEEEEECCcCCC--cccHHHH---
Confidence 7652211 222221 1111111 114578999999976543 12347889999999999833 2222222
Q ss_pred hhccccCceEEEecccc
Q psy496 200 VTDKRKDLKLILMSATL 216 (319)
Q Consensus 200 ~~~~~~~~qiv~lSAT~ 216 (319)
+....+..++++||||+
T Consensus 246 l~~~~~~~~~l~lSATp 262 (510)
T 2oca_A 246 ISGLNNCMFKFGLSGSL 262 (510)
T ss_dssp GGGCTTCCEEEEEESCG
T ss_pred HHhcccCcEEEEEEeCC
Confidence 23344567899999999
No 64
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.70 E-value=2.6e-18 Score=173.77 Aligned_cols=163 Identities=18% Similarity=0.122 Sum_probs=103.6
Q ss_pred cccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCC-CCccEEEEecccHHHHHHH-HH
Q psy496 43 CCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNR-GSECCIMVTQPRRISAIAI-AE 120 (319)
Q Consensus 43 ~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~-~~~~~vl~~~Ptr~la~q~-~~ 120 (319)
.++.+.|.++++.++. +++++|++|||||||+++.+|+++.+..... +...++++++|+++|+.|. .+
T Consensus 6 ~~l~~~Q~~~i~~il~----------g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~ 75 (699)
T 4gl2_A 6 LQLRPYQMEVAQPALE----------GKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRK 75 (699)
T ss_dssp -CCCHHHHHHHHHHHS----------SCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHh----------CCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHH
Confidence 3456889999988765 4679999999999999999999987765421 1113566777999999999 99
Q ss_pred HHHHHhccccCCCCceEEEEEeccc-ccCCCCceEEEECchHHHHHHhcC-------CCCCCccEEEEecccccc---cc
Q psy496 121 RVAQERDEQCGRPGSSVGYQIRLEK-ELPRKRGSILYCTAGILPEVMQSD-------PILSGVSHIVMDEIHERS---MI 189 (319)
Q Consensus 121 ~~~~~~~~~~~~~g~~vg~~~~~~~-~~~~~~~~Iiv~Tpg~ll~~l~~~-------~~l~~v~~vViDEah~~~---~~ 189 (319)
.+.+.+.... ..+...|....... .....+.+|+|+||++|.+.+... ..+.++++|||||||... ..
T Consensus 76 ~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~ 154 (699)
T 4gl2_A 76 EFQPFLKKWY-RVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVY 154 (699)
T ss_dssp THHHHHTTTS-CEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSS
T ss_pred HHHHHcCcCc-eEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchH
Confidence 8988775311 00111121111000 000135689999999999888332 247889999999999621 11
Q ss_pred hhHHHHHHHh-hhccc---------cCceEEEecccc
Q psy496 190 SDFLLAILKD-VTDKR---------KDLKLILMSATL 216 (319)
Q Consensus 190 ~~~~~~~l~~-~~~~~---------~~~qiv~lSAT~ 216 (319)
.......+.. +.... +..++++||||+
T Consensus 155 ~~i~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp 191 (699)
T 4gl2_A 155 NNIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTASP 191 (699)
T ss_dssp CSHHHHHHHHHHHHHHHHC----CCCCCEEEEECSCC
T ss_pred HHHHHHHHHhhhcccccccccccCCCCCEEEEecccc
Confidence 1122111111 11111 567999999999
No 65
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.63 E-value=7.2e-16 Score=153.25 Aligned_cols=163 Identities=18% Similarity=0.054 Sum_probs=85.8
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhC-----CCCccEEEEecccHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARN-----RGSECCIMVTQPRRISAIAI 118 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~-----~~~~~~vl~~~Ptr~la~q~ 118 (319)
.+.+.|.++++.+...-. ..+.++++++|||||||.++... +..+...+ .....++++++|+++|+.|.
T Consensus 178 ~lr~~Q~~ai~~~~~~~~-----~~~~~~ll~~~TGsGKT~~~~~~-~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~ 251 (590)
T 3h1t_A 178 SPRYYQQIAINRAVQSVL-----QGKKRSLITMATGTGKTVVAFQI-SWKLWSARWNRTGDYRKPRILFLADRNVLVDDP 251 (590)
T ss_dssp -CCHHHHHHHHHHHHHHH-----TTCSEEEEEECTTSCHHHHHHHH-HHHHHHTTCCSSCSSSCCCEEEEEC--------
T ss_pred CchHHHHHHHHHHHHHHh-----cCCCceEEEecCCCChHHHHHHH-HHHHHhcccccccccCCCeEEEEeCCHHHHHHH
Confidence 467889999988765221 23366899999999999996554 44444332 01234677777999999999
Q ss_pred H-HHHHHHhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhc-----CCCCCCccEEEEecccccccch-h
Q psy496 119 A-ERVAQERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQS-----DPILSGVSHIVMDEIHERSMIS-D 191 (319)
Q Consensus 119 ~-~~~~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~-----~~~l~~v~~vViDEah~~~~~~-~ 191 (319)
. +.+..+ +..++. +. . .......+|+|+||++|.+.... ......+++||+||||+..... .
T Consensus 252 ~~~~~~~~--------~~~~~~-~~-~-~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~~~~~ 320 (590)
T 3h1t_A 252 KDKTFTPF--------GDARHK-IE-G-GKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSARDNS 320 (590)
T ss_dssp ---CCTTT--------CSSEEE-CC-C---CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC--------
T ss_pred HHHHHHhc--------chhhhh-hh-c-cCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccccchH
Confidence 8 544322 222221 11 1 11224568999999999887532 2235678999999999732110 1
Q ss_pred HHHHHHHhhhccccCceEEEecccc---ChhhHhhhhCC
Q psy496 192 FLLAILKDVTDKRKDLKLILMSATL---NAEKFSQFFGG 227 (319)
Q Consensus 192 ~~~~~l~~~~~~~~~~qiv~lSAT~---~~~~l~~~l~~ 227 (319)
.+..+++. .+..++++||||+ +......+|+.
T Consensus 321 ~~~~il~~----~~~~~~l~lTATP~~~~~~~~~~~f~~ 355 (590)
T 3h1t_A 321 NWREILEY----FEPAFQIGMTATPLREDNRDTYRYFGN 355 (590)
T ss_dssp -CHHHHHH----STTSEEEEEESSCSCTTTHHHHHHSCS
T ss_pred HHHHHHHh----CCcceEEEeccccccccchhHHHHcCC
Confidence 22222222 2346899999998 23456667764
No 66
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.62 E-value=4.8e-17 Score=164.36 Aligned_cols=121 Identities=19% Similarity=0.151 Sum_probs=85.0
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
.++++|..++|++++|+ ++.++ ||||||++|.+|++..... +.+ ++++.|||+||.|.++.+.
T Consensus 83 ~pt~VQ~~~ip~ll~G~--Iaea~----------TGeGKTlaf~LP~~l~aL~---g~~--vlVltptreLA~qd~e~~~ 145 (844)
T 1tf5_A 83 FPFKVQLMGGVALHDGN--IAEMK----------TGEGKTLTSTLPVYLNALT---GKG--VHVVTVNEYLASRDAEQMG 145 (844)
T ss_dssp CCCHHHHHHHHHHHTTS--EEECC----------TTSCHHHHHHHHHHHHHTT---SSC--EEEEESSHHHHHHHHHHHH
T ss_pred CCcHHHHHhhHHHhCCC--EEEcc----------CCcHHHHHHHHHHHHHHHc---CCC--EEEEeCCHHHHHHHHHHHH
Confidence 56799999999998776 55555 9999999999999843332 223 4555599999999998777
Q ss_pred HHhccccCCCCceEEEEEeccc---ccCCCCceEEEECchHH-HHHHhc-------CCCCCCccEEEEecccc
Q psy496 124 QERDEQCGRPGSSVGYQIRLEK---ELPRKRGSILYCTAGIL-PEVMQS-------DPILSGVSHIVMDEIHE 185 (319)
Q Consensus 124 ~~~~~~~~~~g~~vg~~~~~~~---~~~~~~~~Iiv~Tpg~l-l~~l~~-------~~~l~~v~~vViDEah~ 185 (319)
.+.... |..++....+.+ ......++|+|+|||+| ++++.. ...+..+.++|+||||+
T Consensus 146 ~l~~~l----gl~v~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~ 214 (844)
T 1tf5_A 146 KIFEFL----GLTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDS 214 (844)
T ss_dssp HHHHHT----TCCEEECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHH
T ss_pred HHHhhc----CCeEEEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhh
Confidence 764432 445543222111 11112468999999999 555522 23478999999999997
No 67
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.59 E-value=6e-16 Score=149.48 Aligned_cols=136 Identities=16% Similarity=0.081 Sum_probs=92.4
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
++.+.|.++++.+.. ++++++++|||||||.++..++... . .++++++|+++|+.|..+++.
T Consensus 93 ~l~~~Q~~ai~~i~~----------~~~~ll~~~TGsGKT~~~l~~i~~~---~-----~~~Lvl~P~~~L~~Q~~~~~~ 154 (472)
T 2fwr_A 93 SLRDYQEKALERWLV----------DKRGCIVLPTGSGKTHVAMAAINEL---S-----TPTLIVVPTLALAEQWKERLG 154 (472)
T ss_dssp CBCHHHHHHHHHHTT----------TTEEEEECCTTSCHHHHHHHHHHHH---C-----SCEEEEESSHHHHHHHHHHGG
T ss_pred CcCHHHHHHHHHHHh----------cCCEEEEeCCCCCHHHHHHHHHHHc---C-----CCEEEEECCHHHHHHHHHHHH
Confidence 456777777776543 3459999999999999998887653 1 256666799999999999888
Q ss_pred HHhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhcc
Q psy496 124 QERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDK 203 (319)
Q Consensus 124 ~~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~ 203 (319)
+ ++.. .++ ...+.. ....+|+|+||+.+...+..- ..++++||+||+|... .......++ .
T Consensus 155 ~-~~~~------~v~--~~~g~~--~~~~~Ivv~T~~~l~~~~~~~--~~~~~liIvDEaH~~~--~~~~~~~~~----~ 215 (472)
T 2fwr_A 155 I-FGEE------YVG--EFSGRI--KELKPLTVSTYDSAYVNAEKL--GNRFMLLIFDEVHHLP--AESYVQIAQ----M 215 (472)
T ss_dssp G-GCGG------GEE--EBSSSC--BCCCSEEEEEHHHHHHTHHHH--TTTCSEEEEETGGGTT--STTTHHHHH----T
T ss_pred h-CCCc------ceE--EECCCc--CCcCCEEEEEcHHHHHHHHHh--cCCCCEEEEECCcCCC--ChHHHHHHH----h
Confidence 7 4322 033 111111 124679999999998776321 2468999999999732 111222222 2
Q ss_pred ccCceEEEecccc
Q psy496 204 RKDLKLILMSATL 216 (319)
Q Consensus 204 ~~~~qiv~lSAT~ 216 (319)
.+..+++++|||+
T Consensus 216 ~~~~~~l~lSATp 228 (472)
T 2fwr_A 216 SIAPFRLGLTATF 228 (472)
T ss_dssp CCCSEEEEEESCC
T ss_pred cCCCeEEEEecCc
Confidence 2356899999999
No 68
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.59 E-value=1e-16 Score=161.69 Aligned_cols=121 Identities=15% Similarity=0.061 Sum_probs=85.7
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
.++++|..++|++++|+ ++.++ ||||||++|.+|++..... +.++.|++ |||+||.|.++.+.
T Consensus 74 ~p~~VQ~~~i~~ll~G~--Iaem~----------TGsGKTlaf~LP~l~~~l~---g~~vlVlt--PTreLA~Q~~e~~~ 136 (853)
T 2fsf_A 74 RHFDVQLLGGMVLNERC--IAEMR----------TGEGKTLTATLPAYLNALT---GKGVHVVT--VNDYLAQRDAENNR 136 (853)
T ss_dssp CCCHHHHHHHHHHHSSE--EEECC----------TTSCHHHHHHHHHHHHHTT---SSCCEEEE--SSHHHHHHHHHHHH
T ss_pred CCChHHHhhcccccCCe--eeeec----------CCchHHHHHHHHHHHHHHc---CCcEEEEc--CCHHHHHHHHHHHH
Confidence 46799999999998766 55555 9999999999999865432 33455555 99999999998777
Q ss_pred HHhccccCCCCceEEEEEeccc---ccCCCCceEEEECchHH-HHHHhcC-------CCCCCccEEEEecccc
Q psy496 124 QERDEQCGRPGSSVGYQIRLEK---ELPRKRGSILYCTAGIL-PEVMQSD-------PILSGVSHIVMDEIHE 185 (319)
Q Consensus 124 ~~~~~~~~~~g~~vg~~~~~~~---~~~~~~~~Iiv~Tpg~l-l~~l~~~-------~~l~~v~~vViDEah~ 185 (319)
.+.... |..++....+.+ ......++|+|+|||+| +++++.+ ..+++++++|+||||+
T Consensus 137 ~l~~~l----gl~v~~i~GG~~~~~r~~~~~~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~ 205 (853)
T 2fsf_A 137 PLFEFL----GLTVGINLPGMPAPAKREAYAADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDS 205 (853)
T ss_dssp HHHHHT----TCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHH
T ss_pred HHHHhc----CCeEEEEeCCCCHHHHHHhcCCCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHH
Confidence 764432 444442221111 00112468999999999 7777433 3478999999999997
No 69
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.59 E-value=2.6e-16 Score=159.16 Aligned_cols=121 Identities=17% Similarity=0.118 Sum_probs=85.6
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
.++++|..++|++.+|+ ++.++ ||+|||++|.+|++...... .+ ++++.||++||.|.++.+.
T Consensus 111 rP~~VQ~~~ip~Ll~G~--Iaem~----------TGeGKTLa~~LP~~l~aL~g---~~--v~VvTpTreLA~Qdae~m~ 173 (922)
T 1nkt_A 111 RPFDVQVMGAAALHLGN--VAEMK----------TGEGKTLTCVLPAYLNALAG---NG--VHIVTVNDYLAKRDSEWMG 173 (922)
T ss_dssp CCCHHHHHHHHHHHTTE--EEECC----------TTSCHHHHTHHHHHHHHTTT---SC--EEEEESSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhHhcCC--EEEec----------CCCccHHHHHHHHHHHHHhC---CC--eEEEeCCHHHHHHHHHHHH
Confidence 56799999999998765 55555 99999999999997443332 23 5555599999999998877
Q ss_pred HHhccccCCCCceEEEEEecccc---cCCCCceEEEECchHH-HHHHhcC-------CCCCCccEEEEecccc
Q psy496 124 QERDEQCGRPGSSVGYQIRLEKE---LPRKRGSILYCTAGIL-PEVMQSD-------PILSGVSHIVMDEIHE 185 (319)
Q Consensus 124 ~~~~~~~~~~g~~vg~~~~~~~~---~~~~~~~Iiv~Tpg~l-l~~l~~~-------~~l~~v~~vViDEah~ 185 (319)
.+.... |..++......+. .....++|+++|||+| ++++..+ ..+.++.++||||||+
T Consensus 174 ~l~~~l----GLsv~~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDs 242 (922)
T 1nkt_A 174 RVHRFL----GLQVGVILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDS 242 (922)
T ss_dssp HHHHHT----TCCEEECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHH
T ss_pred HHHhhc----CCeEEEEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHH
Confidence 764432 5555533221110 0012468999999999 6776332 3478899999999997
No 70
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.58 E-value=1.4e-15 Score=134.43 Aligned_cols=136 Identities=16% Similarity=0.096 Sum_probs=89.9
Q ss_pred ccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
...+.|.++++.+. ++++++++||||+|||.++..++... ..++++++|+++|+.|..+.+.
T Consensus 93 ~l~~~Q~~ai~~~~----------~~~~~ll~~~tG~GKT~~a~~~~~~~--------~~~~liv~P~~~L~~q~~~~~~ 154 (237)
T 2fz4_A 93 SLRDYQEKALERWL----------VDKRGCIVLPTGSGKTHVAMAAINEL--------STPTLIVVPTLALAEQWKERLG 154 (237)
T ss_dssp CCCHHHHHHHHHHT----------TTSEEEEEESSSTTHHHHHHHHHHHS--------CSCEEEEESSHHHHHHHHHHHG
T ss_pred CcCHHHHHHHHHHH----------hCCCEEEEeCCCCCHHHHHHHHHHHc--------CCCEEEEeCCHHHHHHHHHHHH
Confidence 34566777766543 23459999999999999988776542 1256677799999999998887
Q ss_pred HHhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhcc
Q psy496 124 QERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDK 203 (319)
Q Consensus 124 ~~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~ 203 (319)
+ ++.. .++. ...+. ....+|+|+|++.+...... ....+++|||||+|.. .......+++ .
T Consensus 155 ~-~~~~------~v~~-~~g~~---~~~~~i~v~T~~~l~~~~~~--~~~~~~llIiDEaH~l--~~~~~~~i~~----~ 215 (237)
T 2fz4_A 155 I-FGEE------YVGE-FSGRI---KELKPLTVSTYDSAYVNAEK--LGNRFMLLIFDEVHHL--PAESYVQIAQ----M 215 (237)
T ss_dssp G-GCGG------GEEE-ESSSC---BCCCSEEEEEHHHHHHTHHH--HTTTCSEEEEECSSCC--CTTTHHHHHH----T
T ss_pred h-CCCC------eEEE-EeCCC---CCcCCEEEEeHHHHHhhHHH--hcccCCEEEEECCccC--CChHHHHHHH----h
Confidence 7 4322 0331 11111 12467999999998776632 1246899999999973 2222222222 2
Q ss_pred ccCceEEEecccc
Q psy496 204 RKDLKLILMSATL 216 (319)
Q Consensus 204 ~~~~qiv~lSAT~ 216 (319)
.+..++++||||+
T Consensus 216 ~~~~~~l~LSATp 228 (237)
T 2fz4_A 216 SIAPFRLGLTATF 228 (237)
T ss_dssp CCCSEEEEEEESC
T ss_pred ccCCEEEEEecCC
Confidence 2356889999998
No 71
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.51 E-value=5.8e-14 Score=141.11 Aligned_cols=141 Identities=16% Similarity=0.081 Sum_probs=88.7
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK 145 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~ 145 (319)
+-++++++++||||||||+ +++..+...+ ..++++|||+||.|+++++.+. |..++.......
T Consensus 152 ~l~rk~vlv~apTGSGKT~----~al~~l~~~~-----~gl~l~PtR~LA~Qi~~~l~~~--------g~~v~lltG~~~ 214 (677)
T 3rc3_A 152 AMQRKIIFHSGPTNSGKTY----HAIQKYFSAK-----SGVYCGPLKLLAHEIFEKSNAA--------GVPCDLVTGEER 214 (677)
T ss_dssp TSCCEEEEEECCTTSSHHH----HHHHHHHHSS-----SEEEEESSHHHHHHHHHHHHHT--------TCCEEEECSSCE
T ss_pred hcCCCEEEEEcCCCCCHHH----HHHHHHHhcC-----CeEEEeCHHHHHHHHHHHHHhc--------CCcEEEEECCee
Confidence 3467899999999999998 3444444433 2255679999999999998764 333332222211
Q ss_pred ccC---CCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccc-cCceEEEecccc-Chhh
Q psy496 146 ELP---RKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKR-KDLKLILMSATL-NAEK 220 (319)
Q Consensus 146 ~~~---~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~-~~~qiv~lSAT~-~~~~ 220 (319)
... ....+++++|++.+ .....++++||||+|++ ...++...+...+...+ ++.+++++|||. ..+.
T Consensus 215 ~iv~TpGr~~~il~~T~e~~-------~l~~~v~lvVIDEaH~l-~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~~i~~ 286 (677)
T 3rc3_A 215 VTVQPNGKQASHVSCTVEMC-------SVTTPYEVAVIDEIQMI-RDPARGWAWTRALLGLCAEEVHLCGEPAAIDLVME 286 (677)
T ss_dssp ECCSTTCCCCSEEEEEGGGC-------CSSSCEEEEEECSGGGG-GCTTTHHHHHHHHHHCCEEEEEEEECGGGHHHHHH
T ss_pred EEecCCCcccceeEecHhHh-------hhcccCCEEEEecceec-CCccchHHHHHHHHccCccceEEEeccchHHHHHH
Confidence 110 01234666665432 23578899999999985 33344444444444444 678999999998 6666
Q ss_pred HhhhhCCCCEE
Q psy496 221 FSQFFGGAPIL 231 (319)
Q Consensus 221 l~~~l~~~~~i 231 (319)
+..+.+....+
T Consensus 287 l~~~~~~~~~v 297 (677)
T 3rc3_A 287 LMYTTGEEVEV 297 (677)
T ss_dssp HHHHHTCCEEE
T ss_pred HHHhcCCceEE
Confidence 77666544333
No 72
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.43 E-value=1.5e-14 Score=146.10 Aligned_cols=123 Identities=16% Similarity=0.105 Sum_probs=88.2
Q ss_pred ccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHH
Q psy496 42 ECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAER 121 (319)
Q Consensus 42 ~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~ 121 (319)
...++++|..++|++++|+ ++.++ ||||||++|.+|++..... +.++.|++ ||++||.|.++.
T Consensus 77 G~~Pt~VQ~~~ip~LlqG~--Iaeak----------TGeGKTLvf~Lp~~L~aL~---G~qv~VvT--PTreLA~Qdae~ 139 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLHEGK--IAEMK----------TGEGKTLVATLAVALNALT---GKGVHVVT--VNDYLARRDAEW 139 (997)
T ss_dssp CCCCCHHHHHHHHHHHTTS--EEECC----------STHHHHHHHHHHHHHHHTT---CSCCEEEE--SSHHHHHHHHHH
T ss_pred CCCCcHHHHhhcccccCCc--eeecc----------CCCchHHHHHHHHHHHHHh---CCCEEEEe--CCHHHHHHHHHH
Confidence 3466899999999998876 55555 9999999999999644332 22445555 999999999998
Q ss_pred HHHHhccccCCCCceEEEEEecccc---cCCCCceEEEECchHH-HHHHhcC-------CCCC---CccEEEEecccc
Q psy496 122 VAQERDEQCGRPGSSVGYQIRLEKE---LPRKRGSILYCTAGIL-PEVMQSD-------PILS---GVSHIVMDEIHE 185 (319)
Q Consensus 122 ~~~~~~~~~~~~g~~vg~~~~~~~~---~~~~~~~Iiv~Tpg~l-l~~l~~~-------~~l~---~v~~vViDEah~ 185 (319)
+..++... |..++........ .....++|+|+|||++ +++++.+ ..+. ++.++||||+|.
T Consensus 140 m~~l~~~l----GLsv~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDs 213 (997)
T 2ipc_A 140 MGPVYRGL----GLSVGVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDS 213 (997)
T ss_dssp HHHHHHTT----TCCEEECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHH
T ss_pred HHHHHHhc----CCeEEEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHH
Confidence 87775533 5555533221110 0012478999999999 8888443 2477 899999999996
No 73
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.42 E-value=1.4e-13 Score=143.86 Aligned_cols=172 Identities=17% Similarity=0.141 Sum_probs=107.7
Q ss_pred ccccccccchhhHHHHHHhhh----cCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHH
Q psy496 44 CIMVTQPRRISAIALINKCLT----LSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIA 119 (319)
Q Consensus 44 ~~~~~Q~~~ip~~~~~~~~l~----~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~ 119 (319)
.+.+.|..|++.+..+-.-=. -..++++.+++++||||||.++ ++++..+... +...++|+++|+++|+.|+.
T Consensus 271 ~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~--~~~~rvLvlvpr~eL~~Q~~ 347 (1038)
T 2w00_A 271 VMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATEL--DFIDKVFFVVDRKDLDYQTM 347 (1038)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTC--TTCCEEEEEECGGGCCHHHH
T ss_pred cCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhc--CCCceEEEEeCcHHHHHHHH
Confidence 457899999998876321100 0123467999999999999997 6666544321 22247888889999999999
Q ss_pred HHHHHHhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcC---CCCCCccEEEEecccccccchhHHHHH
Q psy496 120 ERVAQERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSD---PILSGVSHIVMDEIHERSMISDFLLAI 196 (319)
Q Consensus 120 ~~~~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~---~~l~~v~~vViDEah~~~~~~~~~~~~ 196 (319)
+.+.......+ .++.... ...........+|+|+||+++.+.+... +.+....+||+||||+ +...+..
T Consensus 348 ~~f~~f~~~~v-~~~~s~~---~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHr-s~~~~~~--- 419 (1038)
T 2w00_A 348 KEYQRFSPDSV-NGSENTA---GLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHR-SQFGEAQ--- 419 (1038)
T ss_dssp HHHHTTSTTCS-SSSCCCH---HHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCT-THHHHHH---
T ss_pred HHHHHhccccc-ccccCHH---HHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccch-hcchHHH---
Confidence 88877543221 0010000 0001111234679999999999887432 2367789999999997 2222222
Q ss_pred HHhhhccccCceEEEecccc-Ch------hhHhhhhCC
Q psy496 197 LKDVTDKRKDLKLILMSATL-NA------EKFSQFFGG 227 (319)
Q Consensus 197 l~~~~~~~~~~qiv~lSAT~-~~------~~l~~~l~~ 227 (319)
+.+....++.++++||||+ .. .....+||+
T Consensus 420 -~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~ 456 (1038)
T 2w00_A 420 -KNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGR 456 (1038)
T ss_dssp -HHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCS
T ss_pred -HHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCC
Confidence 2222333467999999999 32 345667764
No 74
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.24 E-value=1.7e-11 Score=119.10 Aligned_cols=150 Identities=16% Similarity=0.058 Sum_probs=88.8
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
+.|.|.++++.+.... ..+.+.+++.+||+|||.++...+ ..+...+.. .++|+++|+ .|+.|..+.+.+
T Consensus 38 L~~~Q~~~v~~l~~~~------~~~~~~ilad~~GlGKT~~ai~~i-~~~~~~~~~--~~~LIv~P~-~l~~qw~~e~~~ 107 (500)
T 1z63_A 38 LRPYQIKGFSWMRFMN------KLGFGICLADDMGLGKTLQTIAVF-SDAKKENEL--TPSLVICPL-SVLKNWEEELSK 107 (500)
T ss_dssp CCHHHHHHHHHHHHHH------HTTCCEEECCCTTSCHHHHHHHHH-HHHHHTTCC--SSEEEEECS-TTHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHh------hCCCCEEEEeCCCCcHHHHHHHHH-HHHHhcCCC--CCEEEEccH-HHHHHHHHHHHH
Confidence 4578888887654321 235679999999999999875544 444433322 345666695 577888887777
Q ss_pred HhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccc
Q psy496 125 ERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKR 204 (319)
Q Consensus 125 ~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~ 204 (319)
... +..+...............+|+++|++.+.+... ....++++||+||||...-........+. ..
T Consensus 108 ~~~------~~~v~~~~g~~~~~~~~~~~ivi~t~~~l~~~~~--l~~~~~~~vIvDEaH~~kn~~~~~~~~l~---~l- 175 (500)
T 1z63_A 108 FAP------HLRFAVFHEDRSKIKLEDYDIILTTYAVLLRDTR--LKEVEWKYIVIDEAQNIKNPQTKIFKAVK---EL- 175 (500)
T ss_dssp HCT------TSCEEECSSSTTSCCGGGSSEEEEEHHHHTTCHH--HHTCCEEEEEEETGGGGSCTTSHHHHHHH---TS-
T ss_pred HCC------CceEEEEecCchhccccCCcEEEeeHHHHhccch--hcCCCcCEEEEeCccccCCHhHHHHHHHH---hh-
Confidence 642 1122211111111111345799999999876542 11246899999999973211111222222 22
Q ss_pred cCceEEEecccc
Q psy496 205 KDLKLILMSATL 216 (319)
Q Consensus 205 ~~~qiv~lSAT~ 216 (319)
+..+.+++|||+
T Consensus 176 ~~~~~l~LTaTP 187 (500)
T 1z63_A 176 KSKYRIALTGTP 187 (500)
T ss_dssp CEEEEEEECSSC
T ss_pred ccCcEEEEecCC
Confidence 234789999999
No 75
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.14 E-value=4.9e-11 Score=117.60 Aligned_cols=65 Identities=12% Similarity=-0.043 Sum_probs=49.4
Q ss_pred cccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHH
Q psy496 47 VTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQE 125 (319)
Q Consensus 47 ~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~ 125 (319)
|.|.+.+..+.. ....++++++.||||||||.+|++|++. . ..+++++.||++|+.|+.+.+...
T Consensus 6 ~~Q~~~~~~v~~------~l~~~~~~~~~a~TGtGKT~~~l~p~l~---~-----~~~v~i~~pt~~l~~q~~~~~~~l 70 (551)
T 3crv_A 6 DWQEKLKDKVIE------GLRNNFLVALNAPTGSGKTLFSLLVSLE---V-----KPKVLFVVRTHNEFYPIYRDLTKI 70 (551)
T ss_dssp HHHHHHHHHHHH------HHHTTCEEEEECCTTSSHHHHHHHHHHH---H-----CSEEEEEESSGGGHHHHHHHHTTC
T ss_pred HHHHHHHHHHHH------HHHcCCcEEEECCCCccHHHHHHHHHHh---C-----CCeEEEEcCCHHHHHHHHHHHHHH
Confidence 556666554432 1224578999999999999999999987 1 237888889999999998777654
No 76
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.13 E-value=2e-11 Score=127.73 Aligned_cols=160 Identities=10% Similarity=0.078 Sum_probs=92.9
Q ss_pred cccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHH
Q psy496 43 CCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 43 ~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
.++.|.|..++..+.. ..+.+++|+++||+|||.++...+...+.... ..++++++|+ .|+.|..+.+
T Consensus 152 ~~LrpyQ~eav~~~l~--------~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~---~~rvLIVvP~-sLl~Qw~~E~ 219 (968)
T 3dmq_A 152 TSLIPHQLNIAHDVGR--------RHAPRVLLADEVGLGKTIEAGMILHQQLLSGA---AERVLIIVPE-TLQHQWLVEM 219 (968)
T ss_dssp SCCCHHHHHHHHHHHH--------SSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS---CCCEEEECCT-TTHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHH--------hcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC---CCeEEEEeCH-HHHHHHHHHH
Confidence 3445667766654432 22567999999999999998777665543322 2367777799 8889988888
Q ss_pred HHHhccccCCCCceEEEEEecccccCCCCceEEEECchHHHHHHhcC--CCCCCccEEEEecccccccch---hHHHHHH
Q psy496 123 AQERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSD--PILSGVSHIVMDEIHERSMIS---DFLLAIL 197 (319)
Q Consensus 123 ~~~~~~~~~~~g~~vg~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~--~~l~~v~~vViDEah~~~~~~---~~~~~~l 197 (319)
.+.++..+..++..................+|+|+|++.+.+..... ....++++||+||+|...-.. ......+
T Consensus 220 ~~~f~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~~l 299 (968)
T 3dmq_A 220 LRRFNLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQAI 299 (968)
T ss_dssp HHHSCCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHHHH
T ss_pred HHHhCCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHHHH
Confidence 77665332000000000000000112235679999999886532111 113579999999999732111 1112233
Q ss_pred HhhhccccCceEEEecccc
Q psy496 198 KDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 198 ~~~~~~~~~~qiv~lSAT~ 216 (319)
+.+.. ...+++++|||+
T Consensus 300 ~~L~~--~~~~~L~LTATP 316 (968)
T 3dmq_A 300 EQLAE--HVPGVLLLTATP 316 (968)
T ss_dssp HHHHT--TCSSEEESCSSC
T ss_pred HHHhh--cCCcEEEEEcCC
Confidence 33322 233689999998
No 77
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.08 E-value=1.1e-10 Score=114.93 Aligned_cols=66 Identities=11% Similarity=0.028 Sum_probs=50.5
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
+.+.|.+++..+... ..+++++++.||||+|||.+|++|++.. ..+++++.||++|+.|+.+.+..
T Consensus 8 ~r~~Q~~~~~~v~~~------~~~~~~~~~~a~TGtGKT~~~l~~~~~~--------~~~~~~~~~t~~l~~q~~~~~~~ 73 (540)
T 2vl7_A 8 LRQWQAEKLGEAINA------LKHGKTLLLNAKPGLGKTVFVEVLGMQL--------KKKVLIFTRTHSQLDSIYKNAKL 73 (540)
T ss_dssp -CCHHHHHHHHHHHH------HHTTCEEEEECCTTSCHHHHHHHHHHHH--------TCEEEEEESCHHHHHHHHHHHGG
T ss_pred CCHHHHHHHHHHHHH------HHcCCCEEEEcCCCCcHHHHHHHHHHhC--------CCcEEEEcCCHHHHHHHHHHHHh
Confidence 447788877665432 1245789999999999999999998653 23788888999999999987765
No 78
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=98.84 E-value=1.1e-08 Score=105.03 Aligned_cols=136 Identities=18% Similarity=0.060 Sum_probs=79.4
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK 145 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~ 145 (319)
...+.+.+|+.++|+|||.++...+.......... ..+|+++| ..+..|..+.+.+.... ..+........
T Consensus 252 ~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~--~~~LIV~P-~sll~qW~~E~~~~~p~------~~v~~~~g~~~ 322 (800)
T 3mwy_W 252 WSKGDNGILADEMGLGKTVQTVAFISWLIFARRQN--GPHIIVVP-LSTMPAWLDTFEKWAPD------LNCICYMGNQK 322 (800)
T ss_dssp HTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCC--SCEEEECC-TTTHHHHHHHHHHHSTT------CCEEECCCSSH
T ss_pred hhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCC--CCEEEEEC-chHHHHHHHHHHHHCCC------ceEEEEeCCHH
Confidence 34567899999999999988766665444333322 24566669 55667777777766421 11110000000
Q ss_pred -----------------ccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEeccccc-ccchhHHHHHHHhhhccccCc
Q psy496 146 -----------------ELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHER-SMISDFLLAILKDVTDKRKDL 207 (319)
Q Consensus 146 -----------------~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~-~~~~~~~~~~l~~~~~~~~~~ 207 (319)
.....+.+|+++|++.+.+....-. -..+++||+||||.. +... .....+. .. +..
T Consensus 323 ~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~l~-~~~w~~vIvDEaH~lkn~~s-~~~~~l~---~l-~~~ 396 (800)
T 3mwy_W 323 SRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAELG-SIKWQFMAVDEAHRLKNAES-SLYESLN---SF-KVA 396 (800)
T ss_dssp HHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHHHH-TSEEEEEEETTGGGGCCSSS-HHHHHHT---TS-EEE
T ss_pred HHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHHHh-cCCcceeehhhhhhhcCchh-HHHHHHH---Hh-hhc
Confidence 0112346799999999976542111 136889999999972 1222 2222222 22 233
Q ss_pred eEEEecccc
Q psy496 208 KLILMSATL 216 (319)
Q Consensus 208 qiv~lSAT~ 216 (319)
+.+++|||+
T Consensus 397 ~rl~LTgTP 405 (800)
T 3mwy_W 397 NRMLITGTP 405 (800)
T ss_dssp EEEEECSCC
T ss_pred cEEEeeCCc
Confidence 678999998
No 79
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=98.71 E-value=8.9e-08 Score=95.99 Aligned_cols=158 Identities=15% Similarity=0.019 Sum_probs=90.0
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCC--CCccEEEEecccHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNR--GSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~--~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
+.|.|.+++..+.....- ....++...+++.+||+|||.++...+...+..... ....++|+++|+ .+..|..+.+
T Consensus 56 LrpyQ~~gv~~l~~~~~~-~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~E~ 133 (644)
T 1z3i_X 56 LRPHQREGVKFLWDCVTG-RRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYNEV 133 (644)
T ss_dssp CCHHHHHHHHHHHHHHTT-SSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhhhc-ccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHHHH
Confidence 346777777655431100 011456678999999999999887766554332211 112346666697 6777877777
Q ss_pred HHHhccccCCCCceEEEEEecccc--------------cCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccc-
Q psy496 123 AQERDEQCGRPGSSVGYQIRLEKE--------------LPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERS- 187 (319)
Q Consensus 123 ~~~~~~~~~~~g~~vg~~~~~~~~--------------~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~- 187 (319)
.+...... ..+. +..+.. ......+|+|+|++.+...... ..-.++++||+||+|...
T Consensus 134 ~~~~~~~~----~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~~~-l~~~~~~~vI~DEaH~ikn 206 (644)
T 1z3i_X 134 GKWLGGRV----QPVA--IDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHAEV-LHKGKVGLVICDEGHRLKN 206 (644)
T ss_dssp HHHHGGGC----CEEE--ECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHTTT-TTTSCCCEEEETTGGGCCT
T ss_pred HHHcCCCe----eEEE--EeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhHHH-hhcCCccEEEEECceecCC
Confidence 77654321 1111 111100 0012357999999988765421 112468899999999722
Q ss_pred cchhHHHHHHHhhhccccCceEEEecccc
Q psy496 188 MISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
...... ..+..+ . ..+.+++|||+
T Consensus 207 ~~~~~~-~al~~l---~-~~~rl~LTgTP 230 (644)
T 1z3i_X 207 SDNQTY-LALNSM---N-AQRRVLISGTP 230 (644)
T ss_dssp TCHHHH-HHHHHH---C-CSEEEEECSSC
T ss_pred hhhHHH-HHHHhc---c-cCcEEEEecCc
Confidence 222222 222222 2 33779999998
No 80
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.56 E-value=7.2e-08 Score=96.02 Aligned_cols=143 Identities=15% Similarity=0.130 Sum_probs=73.3
Q ss_pred cccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccch--hhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 47 VTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQ--VPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 47 ~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~--~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
+.|+.+++.++ .++.++|+|++|||||+. +.++.+..+.. ....+|+++.||..+|.++.+.+..
T Consensus 152 ~~Q~~Ai~~~l----------~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~---~~~~~vll~APTg~AA~~L~e~~~~ 218 (608)
T 1w36_D 152 NWQKVAAAVAL----------TRRISVISGGPGTGKTTTVAKLLAALIQMAD---GERCRIRLAAPTGKAAARLTESLGK 218 (608)
T ss_dssp CHHHHHHHHHH----------TBSEEEEECCTTSTHHHHHHHHHHHHHHTCS---SCCCCEEEEBSSHHHHHHHHHHHTH
T ss_pred HHHHHHHHHHh----------cCCCEEEEeCCCCCHHHHHHHHHHHHHHhhh---cCCCeEEEEeCChhHHHHHHHHHHH
Confidence 45666655543 357899999999999944 44555443211 1234788888999999998876654
Q ss_pred HhccccCCCCceEE--EEEecccccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhc
Q psy496 125 ERDEQCGRPGSSVG--YQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTD 202 (319)
Q Consensus 125 ~~~~~~~~~g~~vg--~~~~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~ 202 (319)
..... +.... ..+..+..+. -.++-.+|+.. ...........++++||||+++ +....+..+++.
T Consensus 219 ~~~~l----~l~~~~~~~~~~~~~Ti---h~ll~~~~~~~-~~~~~~~~~l~~d~lIIDEAsm--l~~~~~~~Ll~~--- 285 (608)
T 1w36_D 219 ALRQL----PLTDEQKKRIPEDASTL---HRLLGAQPGSQ-RLRHHAGNPLHLDVLVVDEASM--IDLPMMSRLIDA--- 285 (608)
T ss_dssp HHHHS----SCCSCCCCSCSCCCBTT---TSCC------------CTTSCCSCSEEEECSGGG--CBHHHHHHHHHT---
T ss_pred HHhcC----CCCHHHHhccchhhhhh---HhhhccCCCch-HHHhccCCCCCCCEEEEechhh--CCHHHHHHHHHh---
Confidence 32211 10000 0000000000 01222233321 1111111223789999999997 444444444443
Q ss_pred cccCceEEEeccc
Q psy496 203 KRKDLKLILMSAT 215 (319)
Q Consensus 203 ~~~~~qiv~lSAT 215 (319)
.++..|+|++.-.
T Consensus 286 l~~~~~liLvGD~ 298 (608)
T 1w36_D 286 LPDHARVIFLGDR 298 (608)
T ss_dssp CCTTCEEEEEECT
T ss_pred CCCCCEEEEEcch
Confidence 3456788887544
No 81
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=98.20 E-value=6.4e-07 Score=89.48 Aligned_cols=61 Identities=18% Similarity=0.019 Sum_probs=41.8
Q ss_pred EEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEe
Q psy496 73 IIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIR 142 (319)
Q Consensus 73 li~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~ 142 (319)
+.--.||+|||+++.+|++-....+ .++.|+ .|++.||.+-++.+...+... |..+|....
T Consensus 92 iaEM~TGEGKTLva~lp~~lnAL~G---~~vhVv--T~ndyLA~rdae~m~~l~~~L----glsvg~i~~ 152 (822)
T 3jux_A 92 VAEMKTGEGKTLAATMPIYLNALIG---KGVHLV--TVNDYLARRDALWMGPVYLFL----GLRVGVINS 152 (822)
T ss_dssp EEECCTTSCHHHHTHHHHHHHHTTS---SCEEEE--ESSHHHHHHHHHHHHHHHHHT----TCCEEEEET
T ss_pred hhhccCCCCccHHHHHHHHHHHhcC---CceEEE--eccHHHHHhHHHHHHHHHHHh----CCEEEEEcC
Confidence 3444499999999999987433332 234444 599999999988777765433 666665443
No 82
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.14 E-value=1.7e-06 Score=86.20 Aligned_cols=54 Identities=13% Similarity=0.058 Sum_probs=45.9
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQE 125 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~ 125 (319)
+++++++.||||+|||.+|++|++..+...+ .+++++.||++++.|+.+.+...
T Consensus 21 ~~~~~~~~apTGtGKT~a~l~p~l~~~~~~~----~kvli~t~T~~l~~Qi~~el~~l 74 (620)
T 4a15_A 21 KSYGVALESPTGSGKTIMALKSALQYSSERK----LKVLYLVRTNSQEEQVIKELRSL 74 (620)
T ss_dssp HSSEEEEECCTTSCHHHHHHHHHHHHHHHHT----CEEEEEESSHHHHHHHHHHHHHH
T ss_pred cCCCEEEECCCCCCHHHHHHHHHHHhhhhcC----CeEEEECCCHHHHHHHHHHHHHH
Confidence 4678999999999999999999998876533 37888899999999998877664
No 83
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.78 E-value=5.8e-05 Score=74.51 Aligned_cols=60 Identities=15% Similarity=0.077 Sum_probs=40.8
Q ss_pred HHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHH
Q psy496 58 LINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 58 ~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
..+.++..+..++.++|+|++|||||+.... ++..+...+ .+|+++.||..+|..+.+..
T Consensus 193 ~Q~~Av~~~~~~~~~~I~G~pGTGKTt~i~~-l~~~l~~~g----~~Vl~~ApT~~Aa~~L~e~~ 252 (574)
T 3e1s_A 193 EQASVLDQLAGHRLVVLTGGPGTGKSTTTKA-VADLAESLG----LEVGLCAPTGKAARRLGEVT 252 (574)
T ss_dssp HHHHHHHHHTTCSEEEEECCTTSCHHHHHHH-HHHHHHHTT----CCEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCEEEEEcCCCCCHHHHHHH-HHHHHHhcC----CeEEEecCcHHHHHHhHhhh
Confidence 3445555555678999999999999976433 444443332 36778889999887776543
No 84
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.77 E-value=5.1e-05 Score=72.77 Aligned_cols=68 Identities=16% Similarity=0.216 Sum_probs=44.4
Q ss_pred ccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHH
Q psy496 46 MVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERV 122 (319)
Q Consensus 46 ~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~ 122 (319)
++-|++++..+... +.. ...+++|.|+.|||||+.. ..++..+...+. ..|+++.||..+|..+.+++
T Consensus 27 n~~Q~~av~~~~~~---i~~--~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~~---~~il~~a~T~~Aa~~l~~~~ 94 (459)
T 3upu_A 27 TEGQKNAFNIVMKA---IKE--KKHHVTINGPAGTGATTLT-KFIIEALISTGE---TGIILAAPTHAAKKILSKLS 94 (459)
T ss_dssp CHHHHHHHHHHHHH---HHS--SSCEEEEECCTTSCHHHHH-HHHHHHHHHTTC---CCEEEEESSHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH---Hhc--CCCEEEEEeCCCCCHHHHH-HHHHHHHHhcCC---ceEEEecCcHHHHHHHHhhh
Confidence 45677777665432 111 2248999999999999765 344555544432 35777889988887776544
No 85
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.43 E-value=0.00054 Score=59.26 Aligned_cols=112 Identities=17% Similarity=0.136 Sum_probs=59.9
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccccc
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKEL 147 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~ 147 (319)
.+..++++|++|||||++.+..+.+.... + .+++++.|...- + .. . .+ ....| .
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~-g----~kVli~~~~~d~------r-~~--~-~i---~srlG--------~ 64 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYA-D----VKYLVFKPKIDT------R-SI--R-NI---QSRTG--------T 64 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHT-T----CCEEEEEECCCG------G-GC--S-SC---CCCCC--------C
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhc-C----CEEEEEEeccCc------h-HH--H-HH---HHhcC--------C
Confidence 45678899999999999876655544332 2 256776665320 0 00 0 00 11111 0
Q ss_pred CCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEe
Q psy496 148 PRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILM 212 (319)
Q Consensus 148 ~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~l 212 (319)
. ...+-+.+...+.+.+.....-.++++|||||++. +..+ ....++.+... +..+++.
T Consensus 65 ~--~~~~~~~~~~~i~~~i~~~~~~~~~dvViIDEaQ~--l~~~-~ve~l~~L~~~--gi~Vil~ 122 (223)
T 2b8t_A 65 S--LPSVEVESAPEILNYIMSNSFNDETKVIGIDEVQF--FDDR-ICEVANILAEN--GFVVIIS 122 (223)
T ss_dssp S--SCCEEESSTHHHHHHHHSTTSCTTCCEEEECSGGG--SCTH-HHHHHHHHHHT--TCEEEEE
T ss_pred C--ccccccCCHHHHHHHHHHHhhCCCCCEEEEecCcc--CcHH-HHHHHHHHHhC--CCeEEEE
Confidence 0 01133456666777665433334689999999996 3334 23333444332 4455443
No 86
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.21 E-value=0.0024 Score=60.64 Aligned_cols=134 Identities=13% Similarity=0.079 Sum_probs=71.2
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccC
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELP 148 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~ 148 (319)
...++++|++|||||+....... .+.. .+....++..-+.|..+......+....+.. +- .....
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~-~l~~--~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~-------~~---~~~~~-- 161 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAY-FYKK--RGYKVGLVAADVYRPAAYDQLLQLGNQIGVQ-------VY---GEPNN-- 161 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHH-HHHH--TTCCEEEEEECCSCHHHHHHHHHHHHTTTCC-------EE---CCTTC--
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-HHHH--cCCeEEEEecCccchhHHHHHHHHHHhcCCc-------ee---ecccc--
Confidence 46788999999999988755432 2222 2334555555677777666555555543321 10 00000
Q ss_pred CCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccc--cchhHHHHHHHhhhccccCceEEEecccc--ChhhHhhh
Q psy496 149 RKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERS--MISDFLLAILKDVTDKRKDLKLILMSATL--NAEKFSQF 224 (319)
Q Consensus 149 ~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~--~~~~~~~~~l~~~~~~~~~~qiv~lSAT~--~~~~l~~~ 224 (319)
..|..+...........+++++|||++-... ........+........++.-+++++|+. +....++.
T Consensus 162 --------~dp~~i~~~al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~~~a~~ 233 (433)
T 3kl4_A 162 --------QNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAYDLASR 233 (433)
T ss_dssp --------SCHHHHHHHHHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGHHHHHH
T ss_pred --------CCHHHHHHHHHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHHHHHHH
Confidence 0122222221111123578999999998633 33333333333333334565677788887 55455554
Q ss_pred h
Q psy496 225 F 225 (319)
Q Consensus 225 l 225 (319)
|
T Consensus 234 f 234 (433)
T 3kl4_A 234 F 234 (433)
T ss_dssp H
T ss_pred H
Confidence 4
No 87
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.01 E-value=0.0017 Score=54.17 Aligned_cols=38 Identities=21% Similarity=0.225 Sum_probs=25.8
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEeccc
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPR 111 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Pt 111 (319)
+...+++||.|||||+.....+.+... .+ .+++++.|.
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~~~-~g----~~v~~~~~~ 40 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIYKL-GK----KKVAVFKPK 40 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH-TT----CEEEEEEEC
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHH-CC----CeEEEEeec
Confidence 456889999999999987655443322 22 256676676
No 88
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.96 E-value=0.0027 Score=53.45 Aligned_cols=39 Identities=18% Similarity=0.088 Sum_probs=27.1
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEeccc
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPR 111 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Pt 111 (319)
.++..+++||.|||||++.+-.+.+.. ..+ .+++++.|.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~-~~g----~kV~v~k~~ 45 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAK-IAK----QKIQVFKPE 45 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH-HTT----CCEEEEEEC
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHH-HCC----CEEEEEEec
Confidence 356788899999999988766554433 222 267776676
No 89
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.95 E-value=0.00044 Score=69.14 Aligned_cols=51 Identities=29% Similarity=0.359 Sum_probs=40.0
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHH
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQE 125 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~ 125 (319)
...+|.||+|||||....-.+.+.+.. + .+||+++||..++.++.+++...
T Consensus 206 ~~~lI~GPPGTGKT~ti~~~I~~l~~~-~----~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 206 ELAIIHGPPGTGKTTTVVEIILQAVKQ-G----LKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHT-T----CCEEEEESSHHHHHHHHHHHHHT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhC-C----CeEEEEcCchHHHHHHHHHHHhc
Confidence 468999999999998876655554432 2 37899999999999999888653
No 90
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.82 E-value=0.0057 Score=55.63 Aligned_cols=127 Identities=13% Similarity=0.048 Sum_probs=63.1
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCC---CccEEEEecccH-HHHHHHHHHHHHHhccccCCCCceEEEEE
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRG---SECCIMVTQPRR-ISAIAIAERVAQERDEQCGRPGSSVGYQI 141 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~---~~~~vl~~~Ptr-~la~q~~~~~~~~~~~~~~~~g~~vg~~~ 141 (319)
...+.+++|+||+|+|||+..-. +++.+...... +...++.+.-.. .-..+++..+...+. |....
T Consensus 42 ~~~~~~lli~GpPGTGKT~~v~~-v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~------g~~~~--- 111 (318)
T 3te6_A 42 SSQNKLFYITNADDSTKFQLVND-VMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAIS------KENLC--- 111 (318)
T ss_dssp TTCCCEEEEECCCSHHHHHHHHH-HHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHS------CCC-----
T ss_pred CCCCCeEEEECCCCCCHHHHHHH-HHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhc------CCCCC---
Confidence 34567899999999999977644 45555432211 123455543111 011122222222221 21100
Q ss_pred ecccccCCCCceEEEECchHHHHHHhcCC-CCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 142 RLEKELPRKRGSILYCTAGILPEVMQSDP-ILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 142 ~~~~~~~~~~~~Iiv~Tpg~ll~~l~~~~-~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
. .. +-..|.+.+.... .-...-++++||+|... ..+++...++.........-+|+.++|+
T Consensus 112 ------~-~~------~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-~q~~L~~l~~~~~~~~s~~~vI~i~n~~ 173 (318)
T 3te6_A 112 ------G-DI------SLEALNFYITNVPKAKKRKTLILIQNPENLL-SEKILQYFEKWISSKNSKLSIICVGGHN 173 (318)
T ss_dssp ------C-CC------CHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-CTHHHHHHHHHHHCSSCCEEEEEECCSS
T ss_pred ------c-hH------HHHHHHHHHHHhhhccCCceEEEEecHHHhh-cchHHHHHHhcccccCCcEEEEEEecCc
Confidence 0 00 1122333332211 12345689999999854 5566666665433333345677889998
No 91
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.80 E-value=0.0018 Score=61.49 Aligned_cols=99 Identities=14% Similarity=0.114 Sum_probs=56.5
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEeccc
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEK 145 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~ 145 (319)
.......+|.|+.|||||+.+.-.+ ... .++++.||++++..+.+++.+. |.
T Consensus 158 ~~~~~v~~I~G~aGsGKTt~I~~~~-----~~~-----~~lVlTpT~~aa~~l~~kl~~~--------~~---------- 209 (446)
T 3vkw_A 158 VSSAKVVLVDGVPGCGKTKEILSRV-----NFE-----EDLILVPGRQAAEMIRRRANAS--------GI---------- 209 (446)
T ss_dssp CCCSEEEEEEECTTSCHHHHHHHHC-----CTT-----TCEEEESCHHHHHHHHHHHTTT--------SC----------
T ss_pred cccccEEEEEcCCCCCHHHHHHHHh-----ccC-----CeEEEeCCHHHHHHHHHHhhhc--------Cc----------
Confidence 3455678899999999998753321 111 3455569999998887766331 10
Q ss_pred ccCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHH
Q psy496 146 ELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILK 198 (319)
Q Consensus 146 ~~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~ 198 (319)
.. ..+.-+.|-+.++-.-.. ......+++||||+-+ +..+.+...+.
T Consensus 210 -~~--~~~~~V~T~dsfL~~~~~-~~~~~~d~liiDE~sm--~~~~~l~~l~~ 256 (446)
T 3vkw_A 210 -IV--ATKDNVRTVDSFLMNYGK-GARCQFKRLFIDEGLM--LHTGCVNFLVE 256 (446)
T ss_dssp -CC--CCTTTEEEHHHHHHTTTS-SCCCCCSEEEEETGGG--SCHHHHHHHHH
T ss_pred -cc--cccceEEEeHHhhcCCCC-CCCCcCCEEEEeCccc--CCHHHHHHHHH
Confidence 00 011224555543321111 1123589999999986 55554444443
No 92
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.78 E-value=0.0058 Score=55.01 Aligned_cols=130 Identities=15% Similarity=0.190 Sum_probs=64.5
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccc
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKE 146 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~ 146 (319)
..++.+++.|++|+|||+....... ......+....++-.-+.|..+.+..+.+.+..+. .+-
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~--~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl-------~~~-------- 165 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAA--ISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQA-------PLE-------- 165 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHH--HHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTC-------CCC--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH--HHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCC-------CeE--------
Confidence 3567899999999999987654332 22222232344444456565554444434332221 110
Q ss_pred cCCCCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEeccccChhhHhhh
Q psy496 147 LPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATLNAEKFSQF 224 (319)
Q Consensus 147 ~~~~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~~~~~l~~~ 224 (319)
.. ..|+.+...+.. +.+++++|+|.+-........+..+.+.+....++..+++++||.+...+.++
T Consensus 166 ~~--------~~~~~l~~al~~---~~~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~ 232 (296)
T 2px0_A 166 VC--------YTKEEFQQAKEL---FSEYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHI 232 (296)
T ss_dssp BC--------SSHHHHHHHHHH---GGGSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHH
T ss_pred ec--------CCHHHHHHHHHH---hcCCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHH
Confidence 00 123334333321 36789999997754222222233333333222234457777777654444443
No 93
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.76 E-value=0.0061 Score=50.07 Aligned_cols=21 Identities=24% Similarity=0.080 Sum_probs=17.5
Q ss_pred CCCcEEEecCCCCCccchhhH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l 88 (319)
.++.+++.||+|||||+.+-.
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~ 57 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVA 57 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 467899999999999976543
No 94
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.70 E-value=0.014 Score=49.23 Aligned_cols=41 Identities=20% Similarity=0.358 Sum_probs=24.5
Q ss_pred CCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecc
Q psy496 172 LSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSA 214 (319)
Q Consensus 172 l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSA 214 (319)
...-.+|||||+|. +..+....+++.+...+.+..+|+.+.
T Consensus 124 ~~~~~vlviDe~~~--l~~~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 124 RGRFKVYLIDEVHM--LSRHSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SSSSEEEEEETGGG--SCHHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred cCCceEEEEECccc--ccHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 34567999999998 444444445555544444555555543
No 95
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.57 E-value=0.025 Score=47.05 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=15.5
Q ss_pred CCcEEEecCCCCCccchhh
Q psy496 69 LSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~ 87 (319)
..+++|+||+|+|||+..-
T Consensus 38 ~~~~ll~G~~G~GKT~l~~ 56 (226)
T 2chg_A 38 IPHLLFSGPPGTGKTATAI 56 (226)
T ss_dssp CCCEEEECSTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3459999999999997653
No 96
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.56 E-value=0.0074 Score=57.34 Aligned_cols=55 Identities=18% Similarity=0.178 Sum_probs=36.2
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHh
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQER 126 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~ 126 (319)
...++++|++|+|||+....... .+.. .+....++..-|.|..|....+.+....
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~-~l~~--~G~kVllv~~D~~R~aa~eqL~~~~~~~ 154 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLAR-YFQK--RGYKVGVVCSDTWRPGAYHQLRQLLDRY 154 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHH-HHHT--TTCCEEEEECCCSSTHHHHHHHHHHGGG
T ss_pred CeEEEEECcCCCCHHHHHHHHHH-HHHH--CCCeEEEEeCCCcchhHHHHHHHHHHhc
Confidence 45788999999999988755432 2222 2334555555688887776666666544
No 97
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.48 E-value=0.014 Score=52.70 Aligned_cols=51 Identities=18% Similarity=0.040 Sum_probs=29.9
Q ss_pred HHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhh
Q psy496 34 EIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 34 ~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~ 87 (319)
|.+..+.....-..-|...+..+ .+.+........+++.||+|+|||+..-
T Consensus 16 ~~~k~rP~~~~~ivg~~~~~~~l---~~~l~~~~~~~~~L~~G~~G~GKT~la~ 66 (324)
T 3u61_B 16 LEQKYRPSTIDECILPAFDKETF---KSITSKGKIPHIILHSPSPGTGKTTVAK 66 (324)
T ss_dssp HHHHSCCCSTTTSCCCHHHHHHH---HHHHHTTCCCSEEEECSSTTSSHHHHHH
T ss_pred HHHhhCCCCHHHHhCcHHHHHHH---HHHHHcCCCCeEEEeeCcCCCCHHHHHH
Confidence 55555544444445555554433 3444444444567888889999997653
No 98
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.44 E-value=0.0065 Score=51.97 Aligned_cols=41 Identities=17% Similarity=0.120 Sum_probs=28.4
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRR 112 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr 112 (319)
..+...+++|+-|||||++.+--+.+...... +++++.|..
T Consensus 26 ~~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~-----kVli~k~~~ 66 (214)
T 2j9r_A 26 QNGWIEVICGSMFSGKSEELIRRVRRTQFAKQ-----HAIVFKPCI 66 (214)
T ss_dssp CSCEEEEEECSTTSCHHHHHHHHHHHHHHTTC-----CEEEEECC-
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCC-----EEEEEEecc
Confidence 34556778999999999988776655543332 677777864
No 99
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.44 E-value=0.0093 Score=54.60 Aligned_cols=50 Identities=22% Similarity=0.364 Sum_probs=29.7
Q ss_pred HHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEec
Q psy496 162 LPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMS 213 (319)
Q Consensus 162 ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lS 213 (319)
+.+.+...+......++||||+|. +..+....+++.+...+++..+|+.+
T Consensus 107 l~~~~~~~~~~~~~~vliiDe~~~--l~~~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 107 LLDNVQYAPARGRFKVYLIDEVHM--LSRHSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp HHHHTTSCCSSSSSEEEEEECGGG--SCHHHHHHHHHHHHSCCSSEEEEEEE
T ss_pred HHHHHhhccccCCeEEEEEECcch--hcHHHHHHHHHHHhcCCCceEEEEEe
Confidence 444444444566788999999998 44444445555554444454455443
No 100
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=96.42 E-value=0.031 Score=50.88 Aligned_cols=51 Identities=14% Similarity=0.206 Sum_probs=31.9
Q ss_pred HHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecc
Q psy496 162 LPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSA 214 (319)
Q Consensus 162 ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSA 214 (319)
+.+.+...+.....+++||||+|. +..+..-.+++.+...+++..+|+.+.
T Consensus 96 l~~~~~~~~~~~~~kvviIdead~--l~~~a~naLLk~lEep~~~~~~Il~t~ 146 (334)
T 1a5t_A 96 VTEKLNEHARLGGAKVVWVTDAAL--LTDAAANALLKTLEEPPAETWFFLATR 146 (334)
T ss_dssp HHHHTTSCCTTSSCEEEEESCGGG--BCHHHHHHHHHHHTSCCTTEEEEEEES
T ss_pred HHHHHhhccccCCcEEEEECchhh--cCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 334444445567799999999998 455555556666655444555555543
No 101
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.22 E-value=0.02 Score=52.61 Aligned_cols=18 Identities=22% Similarity=0.409 Sum_probs=15.6
Q ss_pred cEEEecCCCCCccchhhH
Q psy496 71 PSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l 88 (319)
+++|+||+|+|||+..-.
T Consensus 46 ~~li~G~~G~GKTtl~~~ 63 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRK 63 (389)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 799999999999977643
No 102
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.20 E-value=0.0063 Score=51.79 Aligned_cols=21 Identities=10% Similarity=0.188 Sum_probs=17.6
Q ss_pred CCCCcEEEecCCCCCccchhh
Q psy496 67 PILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~ 87 (319)
..+.+++|+||+|+|||+..-
T Consensus 50 ~~~~~~ll~G~~G~GKT~la~ 70 (242)
T 3bos_A 50 DGVQAIYLWGPVKSGRTHLIH 70 (242)
T ss_dssp CSCSEEEEECSTTSSHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHH
Confidence 356889999999999997653
No 103
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.15 E-value=0.0028 Score=50.98 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=17.1
Q ss_pred CCCcEEEecCCCCCccchhh
Q psy496 68 ILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~ 87 (319)
.++.++|.||+|||||+..-
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~ 54 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQ 54 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57889999999999997653
No 104
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.14 E-value=0.016 Score=51.73 Aligned_cols=21 Identities=24% Similarity=0.098 Sum_probs=17.0
Q ss_pred CCCCcEEEecCCCCCccchhh
Q psy496 67 PILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~ 87 (319)
....+++++||+|+|||+.+-
T Consensus 65 ~~~~~vll~G~~GtGKT~la~ 85 (309)
T 3syl_A 65 TPTLHMSFTGNPGTGKTTVAL 85 (309)
T ss_dssp CCCCEEEEEECTTSSHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 345679999999999997653
No 105
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.14 E-value=0.037 Score=50.54 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=18.1
Q ss_pred CCCCcEEEecCCCCCccchhhH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l 88 (319)
....+++|+||+|+|||+..-.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~ 63 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARL 63 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHH
Confidence 4567899999999999977643
No 106
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.07 E-value=0.024 Score=51.36 Aligned_cols=50 Identities=20% Similarity=0.300 Sum_probs=27.9
Q ss_pred HHHhccCCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhh
Q psy496 34 EIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 34 ~~~~~~~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~ 87 (319)
|.+..+........-|...+..+. ..+... ...++++.||+|+|||+.+-
T Consensus 27 ~~~k~~p~~~~~i~g~~~~~~~l~---~~l~~~-~~~~~ll~G~~G~GKT~la~ 76 (353)
T 1sxj_D 27 WVEKYRPKNLDEVTAQDHAVTVLK---KTLKSA-NLPHMLFYGPPGTGKTSTIL 76 (353)
T ss_dssp HHHHTCCSSTTTCCSCCTTHHHHH---HHTTCT-TCCCEEEECSTTSSHHHHHH
T ss_pred HHHhcCCCCHHHhhCCHHHHHHHH---HHHhcC-CCCEEEEECCCCCCHHHHHH
Confidence 445544433333344555554432 222222 12459999999999997653
No 107
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=96.06 E-value=0.0098 Score=58.95 Aligned_cols=59 Identities=22% Similarity=0.156 Sum_probs=44.7
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhcc
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDE 128 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~ 128 (319)
++.++|.|+.|||||.....-+...+...+ ....+|+++.+|+.+|.++.+++.+..+.
T Consensus 22 ~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~-~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLVHRIAWLMSVEN-CSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHHHHHTSC-CCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHhCC-CChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 567999999999999887665554443322 23447888889999999999999887653
No 108
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.03 E-value=0.0083 Score=54.22 Aligned_cols=20 Identities=40% Similarity=0.692 Sum_probs=16.7
Q ss_pred CCCcEEEecCCCCCccchhh
Q psy496 68 ILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~ 87 (319)
....++|+||+|+|||+..-
T Consensus 36 ~~~~lll~G~~GtGKT~la~ 55 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQ 55 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHH
Confidence 35689999999999997653
No 109
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.99 E-value=0.046 Score=48.77 Aligned_cols=39 Identities=18% Similarity=0.276 Sum_probs=23.5
Q ss_pred CCccEEEEecccccccchhHHHHHHHhhhccccCceEEEec
Q psy496 173 SGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMS 213 (319)
Q Consensus 173 ~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lS 213 (319)
.+..++||||+|. +..+....+++.+...+++.++|+.+
T Consensus 109 ~~~~vliiDe~~~--l~~~~~~~L~~~le~~~~~~~~i~~~ 147 (327)
T 1iqp_A 109 ASFKIIFLDEADA--LTQDAQQALRRTMEMFSSNVRFILSC 147 (327)
T ss_dssp CSCEEEEEETGGG--SCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCCeEEEEeCCCc--CCHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 4578999999998 44444444444444444455666543
No 110
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=95.95 E-value=0.11 Score=48.41 Aligned_cols=55 Identities=16% Similarity=0.145 Sum_probs=41.0
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhc
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERD 127 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~ 127 (319)
+.+++..+-+.|||.+....++..+... +...|+++.|++.-|..+.+.+.....
T Consensus 179 R~~vi~~sRq~GKT~l~a~~~l~~a~~~---~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 179 RMTVCNLSRQLGKTTVVAIFLAHFVCFN---KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp SEEEEEECSSSCHHHHHHHHHHHHHHSS---SSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred cEEEEEEcCcCChhHHHHHHHHHHHHhC---CCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 5588999999999988766665433332 245788999999999888877766543
No 111
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.90 E-value=0.025 Score=51.47 Aligned_cols=43 Identities=14% Similarity=0.351 Sum_probs=27.3
Q ss_pred CCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 172 LSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 172 l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
..+.+++|+||+|. +..+....+++.+...+++..+|+.|-..
T Consensus 132 ~~~~~vlilDE~~~--L~~~~~~~L~~~le~~~~~~~~Il~t~~~ 174 (354)
T 1sxj_E 132 AHRYKCVIINEANS--LTKDAQAALRRTMEKYSKNIRLIMVCDSM 174 (354)
T ss_dssp --CCEEEEEECTTS--SCHHHHHHHHHHHHHSTTTEEEEEEESCS
T ss_pred CCCCeEEEEeCccc--cCHHHHHHHHHHHHhhcCCCEEEEEeCCH
Confidence 34678999999998 55555555555555544555666665544
No 112
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=95.88 E-value=0.13 Score=50.54 Aligned_cols=57 Identities=16% Similarity=0.112 Sum_probs=42.8
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhcc
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDE 128 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~ 128 (319)
.+.+++.++-|+|||.+....++..+... +...++++.|++..|..+...+...+..
T Consensus 178 ~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~---~~~~i~~va~t~~qA~~~~~~i~~~i~~ 234 (592)
T 3cpe_A 178 KRMTVCNLSRQLGKTTVVAIFLAHFVCFN---KDKAVGILAHKGSMSAEVLDRTKQAIEL 234 (592)
T ss_dssp CSEEEEEECSSSCHHHHHHHHHHHHHHTS---SSCEEEEEESSHHHHHHHHHHHHHHHTT
T ss_pred ccEEEEEEcCccChHHHHHHHHHHHHHhC---CCCeEEEEECCHHHHHHHHHHHHHHHHh
Confidence 35689999999999988766555444332 2458899999999999988877766543
No 113
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=95.87 E-value=0.0062 Score=60.54 Aligned_cols=52 Identities=21% Similarity=0.307 Sum_probs=38.8
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
+...+|.||+|||||......+ ..+.... ..+|+++.||..++.++.+++.+
T Consensus 195 ~~~~li~GppGTGKT~~~~~~i-~~l~~~~---~~~ilv~a~tn~A~~~l~~~l~~ 246 (624)
T 2gk6_A 195 RPLSLIQGPPGTGKTVTSATIV-YHLARQG---NGPVLVCAPSNIAVDQLTEKIHQ 246 (624)
T ss_dssp CSEEEEECCTTSCHHHHHHHHH-HHHHTSS---SCCEEEEESSHHHHHHHHHHHHT
T ss_pred CCCeEEECCCCCCHHHHHHHHH-HHHHHcC---CCeEEEEeCcHHHHHHHHHHHHh
Confidence 4678999999999998765433 3333211 34788888999999999988765
No 114
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.01 Score=60.66 Aligned_cols=62 Identities=16% Similarity=0.200 Sum_probs=42.9
Q ss_pred HHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHH
Q psy496 60 NKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQE 125 (319)
Q Consensus 60 ~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~ 125 (319)
.+++..+..+...+|.||+|||||......+. .+.... ..+|+++.||..++.++.+++.+.
T Consensus 366 ~~Av~~~l~~~~~lI~GppGTGKT~~i~~~i~-~l~~~~---~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 366 SNAVSHVLQRPLSLIQGPPGTGKTVTSATIVY-HLSKIH---KDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp HHHHHHHTTCSEEEEECSTTSSHHHHHHHHHH-HHHHHH---CCCEEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCEEEECCCCCCHHHHHHHHHH-HHHhCC---CCeEEEEcCcHHHHHHHHHHHHhh
Confidence 33343333456789999999999987654443 333211 237888889999999999988763
No 115
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.81 E-value=0.046 Score=50.09 Aligned_cols=27 Identities=22% Similarity=0.269 Sum_probs=19.5
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l 94 (319)
.....++|+||+|+|||+..-. +.+.+
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~-l~~~~ 69 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKY-IFNEI 69 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHH-HHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHH-HHHHH
Confidence 3456899999999999977633 34443
No 116
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.77 E-value=0.019 Score=49.11 Aligned_cols=49 Identities=14% Similarity=-0.026 Sum_probs=27.0
Q ss_pred HHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccH
Q psy496 59 INKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRR 112 (319)
Q Consensus 59 ~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr 112 (319)
|.........+...+++|+-|||||+..+.-+.+. ...+ .+++++.|..
T Consensus 18 ~~~m~~~~~~G~I~vitG~M~sGKTT~Llr~~~r~-~~~g----~kvli~kp~~ 66 (219)
T 3e2i_A 18 GSHMYETYHSGWIECITGSMFSGKSEELIRRLRRG-IYAK----QKVVVFKPAI 66 (219)
T ss_dssp ---------CCEEEEEEECTTSCHHHHHHHHHHHH-HHTT----CCEEEEEEC-
T ss_pred CceEeeccCCceEEEEECCCCCCHHHHHHHHHHHH-HHcC----CceEEEEecc
Confidence 33333334566788999999999998776555433 3222 2567766763
No 117
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.75 E-value=0.011 Score=49.77 Aligned_cols=39 Identities=18% Similarity=0.084 Sum_probs=28.0
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEeccc
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPR 111 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Pt 111 (319)
.++-.+++||.|||||+-.+..+-+....+ .+++++.|.
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~-----~kvl~~kp~ 57 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIAQ-----YKCLVIKYA 57 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTT-----CCEEEEEET
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHcC-----CeEEEEccc
Confidence 356789999999999988777666554443 267776665
No 118
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=95.64 E-value=0.052 Score=48.92 Aligned_cols=50 Identities=14% Similarity=0.240 Sum_probs=32.9
Q ss_pred HHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEec
Q psy496 162 LPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMS 213 (319)
Q Consensus 162 ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lS 213 (319)
+.+.....+...+.+++||||+|. +..+..-.+++.+...+++..+|+.+
T Consensus 70 li~~~~~~p~~~~~kvviIdead~--lt~~a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 70 IKDFLNYSPELYTRKYVIVHDCER--MTQQAANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp HHHHHTSCCSSSSSEEEEETTGGG--BCHHHHHHTHHHHHSCCTTEEEEEEE
T ss_pred HHHHHhhccccCCceEEEeccHHH--hCHHHHHHHHHHHhCCCCCeEEEEEE
Confidence 444445555567899999999998 55555556666665555555555553
No 119
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=95.49 E-value=0.017 Score=57.71 Aligned_cols=69 Identities=19% Similarity=0.112 Sum_probs=40.0
Q ss_pred cccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 45 IMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 45 ~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
++..|..+|..+..+- . ......++.|-||||||..+...+ ... + ..+|++.|+..+|.|++..+..
T Consensus 13 p~~~Q~~~i~~l~~~~---~--~~~~~~~l~g~~gs~k~~~~a~~~-~~~---~----~~~lvv~~~~~~A~~l~~el~~ 79 (661)
T 2d7d_A 13 PQGDQPKAIEKLVKGI---Q--EGKKHQTLLGATGTGKTFTVSNLI-KEV---N----KPTLVIAHNKTLAGQLYSEFKE 79 (661)
T ss_dssp CCTTHHHHHHHHHHHH---H--TTCSEEEEEECTTSCHHHHHHHHH-HHH---C----CCEEEECSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH---h--cCCCcEEEECcCCcHHHHHHHHHH-HHh---C----CCEEEEECCHHHHHHHHHHHHH
Confidence 4455666665443321 1 111235677889999986553322 221 1 1366666888888888887777
Q ss_pred Hh
Q psy496 125 ER 126 (319)
Q Consensus 125 ~~ 126 (319)
++
T Consensus 80 ~~ 81 (661)
T 2d7d_A 80 FF 81 (661)
T ss_dssp HC
T ss_pred Hc
Confidence 64
No 120
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.45 E-value=0.048 Score=47.10 Aligned_cols=40 Identities=18% Similarity=0.105 Sum_probs=28.1
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRR 112 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr 112 (319)
.++..+++|+-|||||++.+--+.+....+ .+++++.|..
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g-----~kvli~kp~~ 57 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQ-----YKCLVIKYAK 57 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTT-----CCEEEEEETT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCC-----CeEEEEeecC
Confidence 356688899999999998877665554332 2677766753
No 121
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=95.28 E-value=0.019 Score=61.51 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=45.1
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhC-CCCccEEEEecccHHHHHHHHHHHHHHhc
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARN-RGSECCIMVTQPRRISAIAIAERVAQERD 127 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~-~~~~~~vl~~~Ptr~la~q~~~~~~~~~~ 127 (319)
+++++|.|+.|||||.+...=++..+.... .-..-+|+++.+|+.+|..+.+++...++
T Consensus 23 ~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~l~ 82 (1232)
T 3u4q_A 23 GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEALE 82 (1232)
T ss_dssp SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHHHH
Confidence 689999999999999987665655554321 11334799999999999999998887654
No 122
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=95.26 E-value=0.014 Score=59.75 Aligned_cols=53 Identities=21% Similarity=0.281 Sum_probs=39.0
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
.+...+|.||+|||||+..... +..+.... ..+|+++.||..++.++.+++..
T Consensus 370 ~~~~~lI~GppGTGKT~ti~~~-i~~l~~~~---~~~ilv~a~tn~A~~~l~~~l~~ 422 (800)
T 2wjy_A 370 QRPLSLIQGPPGTGKTVTSATI-VYHLARQG---NGPVLVCAPSNIAVDQLTEKIHQ 422 (800)
T ss_dssp TSSEEEEECCTTSCHHHHHHHH-HHHHHTTC---SSCEEEEESSHHHHHHHHHHHHT
T ss_pred cCCeEEEEcCCCCCHHHHHHHH-HHHHHHcC---CCcEEEEcCcHHHHHHHHHHHHH
Confidence 3467899999999999876443 33343311 24788888999999999888765
No 123
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.13 E-value=0.077 Score=47.49 Aligned_cols=46 Identities=20% Similarity=0.193 Sum_probs=26.7
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAI 116 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~ 116 (319)
.++.+.++|++|+|||+....... ..... +....++-.-+.+..+.
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~--~~~~~-~~~v~l~~~d~~~~~~~ 142 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLAL--YYKGK-GRRPLLVAADTQRPAAR 142 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHH--HHHHT-TCCEEEEECCSSCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHHc-CCeEEEecCCcccHhHH
Confidence 456788899999999977644332 22222 22334444445665544
No 124
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.12 E-value=0.11 Score=46.05 Aligned_cols=38 Identities=11% Similarity=0.156 Sum_probs=22.5
Q ss_pred CccEEEEecccccccchhHHHHHHHhhhccccCceEEEec
Q psy496 174 GVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMS 213 (319)
Q Consensus 174 ~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lS 213 (319)
...++||||+|. +..+....+++.+...+++..+|+.+
T Consensus 107 ~~~viiiDe~~~--l~~~~~~~L~~~le~~~~~~~~il~~ 144 (323)
T 1sxj_B 107 KHKIVILDEADS--MTAGAQQALRRTMELYSNSTRFAFAC 144 (323)
T ss_dssp CCEEEEEESGGG--SCHHHHHTTHHHHHHTTTTEEEEEEE
T ss_pred CceEEEEECccc--CCHHHHHHHHHHHhccCCCceEEEEe
Confidence 378999999997 33333333444443344455666654
No 125
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.10 E-value=0.024 Score=56.66 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=44.1
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhc
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERD 127 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~ 127 (319)
+++++|.|+.|||||.....-+...+...+. ....|+++..|+.+|.++.+++...++
T Consensus 15 ~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~-~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 15 TGPCLVLAGAGSGKTRVITNKIAHLIRGCGY-QARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp SSEEEECCCTTSCHHHHHHHHHHHHHHHHCC-CGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred CCCEEEEeCCCCChHHHHHHHHHHHHHhcCC-CHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 5789999999999998876555554443221 234788888999999999999987754
No 126
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=95.05 E-value=0.02 Score=57.38 Aligned_cols=75 Identities=19% Similarity=0.149 Sum_probs=50.6
Q ss_pred CCccccccccccchhhHHHHHHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHH
Q psy496 40 GSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIA 119 (319)
Q Consensus 40 ~~~~~~~~~Q~~~ip~~~~~~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~ 119 (319)
.++.+++..|..+|..+..+-+ ......++.|.||||||..+...+ ... +. .+|++.|+..+|.|++
T Consensus 4 ~~~~~~~~~q~~ai~~l~~~~~-----~~~~~~~l~g~tgs~kt~~~a~~~-~~~--~~-----~~lvv~~~~~~A~ql~ 70 (664)
T 1c4o_A 4 YRGPSPKGDQPKAIAGLVEALR-----DGERFVTLLGATGTGKTVTMAKVI-EAL--GR-----PALVLAPNKILAAQLA 70 (664)
T ss_dssp CCSCCCCTTHHHHHHHHHHHHH-----TTCSEEEEEECTTSCHHHHHHHHH-HHH--TC-----CEEEEESSHHHHHHHH
T ss_pred CCCCCCCCCChHHHHHHHHHHh-----cCCCcEEEEcCCCcHHHHHHHHHH-HHh--CC-----CEEEEecCHHHHHHHH
Confidence 4455677889999877654321 112346788999999997664332 221 11 3666669999999999
Q ss_pred HHHHHHhc
Q psy496 120 ERVAQERD 127 (319)
Q Consensus 120 ~~~~~~~~ 127 (319)
..+..++.
T Consensus 71 ~el~~~~~ 78 (664)
T 1c4o_A 71 AEFRELFP 78 (664)
T ss_dssp HHHHHHCT
T ss_pred HHHHHHCC
Confidence 99888753
No 127
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=94.95 E-value=0.2 Score=47.35 Aligned_cols=26 Identities=31% Similarity=0.424 Sum_probs=19.1
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEI 95 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~ 95 (319)
...++|+||+|+|||+.+- .+.+.+.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~-aia~~l~ 155 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ-SIGNYVV 155 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH-HHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 5689999999999997653 3344443
No 128
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=94.92 E-value=0.082 Score=47.44 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=17.5
Q ss_pred CCCCCcEEEecCCCCCccchh
Q psy496 66 SPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~ 86 (319)
+..+.+++|+||+|+|||..+
T Consensus 22 a~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 22 APSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp CSTTSCEEEESCTTSCHHHHH
T ss_pred hCCCCcEEEECCCCchHHHHH
Confidence 455678999999999999664
No 129
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.81 E-value=0.13 Score=46.40 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=30.2
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
.++.++++|++|||||+....... ..... +....++-.-+.|..+.+..+.+.+
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~--~l~~~-g~kV~lv~~D~~r~~a~eqL~~~~~ 156 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAK--MFVDE-GKSVVLAAADTFRAAAIEQLKIWGE 156 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHH--HHHHT-TCCEEEEEECTTCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHH--HHHhc-CCEEEEEccccccHHHHHHHHHHHH
Confidence 356788999999999987654332 22222 2233444444566555443333443
No 130
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.80 E-value=0.034 Score=56.22 Aligned_cols=58 Identities=21% Similarity=0.177 Sum_probs=43.6
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhc
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERD 127 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~ 127 (319)
+++++|.|+.|||||.+...-+...+...+ -....|+++..|+.+|.++.+++...++
T Consensus 24 ~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~-~~p~~IL~vTFTnkAA~Em~~Rl~~~l~ 81 (724)
T 1pjr_A 24 EGPLLIMAGAGSGKTRVLTHRIAYLMAEKH-VAPWNILAITFTNKAAREMRERVQSLLG 81 (724)
T ss_dssp SSCEEEEECTTSCHHHHHHHHHHHHHHTTC-CCGGGEEEEESSHHHHHHHHHHHHHHHG
T ss_pred CCCEEEEEcCCCCHHHHHHHHHHHHHHhcC-CCHHHeEEEeccHHHHHHHHHHHHHHhc
Confidence 467999999999999887655554443222 2234788888999999999998887654
No 131
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.78 E-value=0.14 Score=48.40 Aligned_cols=21 Identities=24% Similarity=0.374 Sum_probs=17.2
Q ss_pred CcEEEecCCCCCccchhhHHH
Q psy496 70 SPSIIYTSTGCGKTTQVPQFI 90 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~i 90 (319)
.+++++|++|+|||+......
T Consensus 100 ~vI~ivG~~GvGKTTla~~La 120 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLA 120 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 579999999999998775543
No 132
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.76 E-value=0.11 Score=47.05 Aligned_cols=39 Identities=18% Similarity=0.316 Sum_probs=23.8
Q ss_pred CCccEEEEecccccccchhHHHHHHHhhhccccCceEEEec
Q psy496 173 SGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMS 213 (319)
Q Consensus 173 ~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lS 213 (319)
.+.+++|+||+|. +..+....+++.+...+...++++.+
T Consensus 109 ~~~~viiiDe~~~--l~~~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADA--MTNAAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGG--SCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCC--CCHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 4689999999997 44444444444444444455555543
No 133
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=94.75 E-value=0.065 Score=47.58 Aligned_cols=17 Identities=24% Similarity=0.288 Sum_probs=14.6
Q ss_pred cEEEecCCCCCccchhh
Q psy496 71 PSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~ 87 (319)
+++++||+|+|||+..-
T Consensus 40 ~~ll~G~~G~GKt~la~ 56 (319)
T 2chq_A 40 HLLFSGPPGTGKTATAI 56 (319)
T ss_dssp CEEEESSSSSSHHHHHH
T ss_pred eEEEECcCCcCHHHHHH
Confidence 59999999999997653
No 134
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=94.67 E-value=0.05 Score=54.40 Aligned_cols=15 Identities=7% Similarity=0.166 Sum_probs=12.4
Q ss_pred CCCcEEEeCCccccc
Q psy496 275 GGAPILHIPGFTYPV 289 (319)
Q Consensus 275 ~g~~LVFlp~R~~~v 289 (319)
++++|||++|+..+-
T Consensus 439 ~~~vlVf~~t~~~ae 453 (664)
T 1c4o_A 439 GERTLVTVLTVRMAE 453 (664)
T ss_dssp TCEEEEECSSHHHHH
T ss_pred CCEEEEEECCHHHHH
Confidence 678999999987663
No 135
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.38 E-value=0.19 Score=50.82 Aligned_cols=16 Identities=38% Similarity=0.453 Sum_probs=14.3
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
+++++||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999765
No 136
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=93.95 E-value=0.15 Score=46.40 Aligned_cols=57 Identities=21% Similarity=0.214 Sum_probs=32.2
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHh
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQER 126 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~ 126 (319)
+.+..+.+.||+|||||+..-... .+.... +....+.-....|..+.+..+.++...
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~La--g~l~~~-~g~V~l~g~D~~r~~a~eql~~~~~~~ 183 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLA--NWLKNH-GFSVVIAASDTFRAGAIEQLEEHAKRI 183 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHH--HHHHHT-TCCEEEEEECCSSTTHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHH--HHHHhc-CCEEEEEeecccccchHHHHHHHHHHc
Confidence 457789999999999998764332 233322 223333333344544554444455443
No 137
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.47 E-value=0.15 Score=52.39 Aligned_cols=17 Identities=29% Similarity=0.411 Sum_probs=14.9
Q ss_pred CcEEEecCCCCCccchh
Q psy496 70 SPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~ 86 (319)
.+++++||||+|||+.+
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 47999999999999765
No 138
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=93.35 E-value=0.065 Score=53.38 Aligned_cols=96 Identities=18% Similarity=0.246 Sum_probs=58.6
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHHhccccCCCCceEEEEEecccccCC
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGYQIRLEKELPR 149 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~~~~~~~~~g~~vg~~~~~~~~~~~ 149 (319)
...+|+|+-|.|||++.-+.+-.. . . .++++.|+.+.+..+.+...+ .
T Consensus 193 ~~~vlta~RGRGKSa~lG~~~a~~-~--~-----~~~vtAP~~~a~~~l~~~~~~----~-------------------- 240 (671)
T 2zpa_A 193 GVAAVTAARGRGKSALAGQLISRI-A--G-----RAIVTAPAKASTDVLAQFAGE----K-------------------- 240 (671)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHS-S--S-----CEEEECSSCCSCHHHHHHHGG----G--------------------
T ss_pred CeEEEecCCCCCHHHHHHHHHHHH-H--h-----CcEEECCCHHHHHHHHHHhhC----C--------------------
Confidence 568999999999997776655332 1 1 358888998877655442211 0
Q ss_pred CCceEEEECchHHHHHHhcCCCCCCccEEEEecccccccchhHHHHHHHhhhccccCceEEEecccc
Q psy496 150 KRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL 216 (319)
Q Consensus 150 ~~~~Iiv~Tpg~ll~~l~~~~~l~~v~~vViDEah~~~~~~~~~~~~l~~~~~~~~~~qiv~lSAT~ 216 (319)
|-+..|+-++. .+.+.+++|||||=. +....+..++. ....++||.|+
T Consensus 241 ----i~~~~Pd~~~~------~~~~~dlliVDEAAa--Ip~pll~~ll~-------~~~~v~~~tTv 288 (671)
T 2zpa_A 241 ----FRFIAPDALLA------SDEQADWLVVDEAAA--IPAPLLHQLVS-------RFPRTLLTTTV 288 (671)
T ss_dssp ----CCBCCHHHHHH------SCCCCSEEEEETGGG--SCHHHHHHHHT-------TSSEEEEEEEB
T ss_pred ----eEEeCchhhhh------CcccCCEEEEEchhc--CCHHHHHHHHh-------hCCeEEEEecC
Confidence 22335554332 124689999999986 44444433333 11246777777
No 139
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=93.33 E-value=0.037 Score=43.74 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=17.8
Q ss_pred CCCCCcEEEecCCCCCccchh
Q psy496 66 SPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~ 86 (319)
+..+.+++|.||+|||||..+
T Consensus 21 a~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 21 SETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TTCCSCEEEESSTTSSHHHHH
T ss_pred hCCCCCEEEECCCCCCHHHHH
Confidence 456688999999999999665
No 140
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.15 E-value=0.35 Score=45.58 Aligned_cols=54 Identities=17% Similarity=0.171 Sum_probs=32.2
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
.++.++++|++|||||+....... .... .+....++-.-+.+..+....+.+..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~--~l~~-~g~~Vllvd~D~~r~aa~~qL~~~~~ 150 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL--YYKG-KGRRPLLVAADTQRPAAREQLRLLGE 150 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH--HHHT-TTCCEEEEECCSSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH--HHHH-cCCeEEEeeccccCchhHHHHHHhcc
Confidence 356788899999999987654332 2222 23344555555777766544444443
No 141
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=92.68 E-value=0.45 Score=42.49 Aligned_cols=53 Identities=17% Similarity=0.159 Sum_probs=30.8
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQ 124 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~ 124 (319)
+..++++|++|+|||+........ +.. .+....++-.-+.|..+....+.+..
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~-~~~--~g~~v~l~~~D~~r~~a~~ql~~~~~ 150 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYF-YKK--KGFKVGLVGADVYRPAALEQLQQLGQ 150 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHH-HHH--TTCCEEEEECCCSSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHH--CCCeEEEEecCCCCHHHHHHHHHHhc
Confidence 557888999999999876543322 222 22344444445666655544444443
No 142
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=92.57 E-value=0.076 Score=49.95 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=26.1
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRIS 114 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~l 114 (319)
.+.+++|.|+||||||..+ ..++..+...+ ..++++-|..++
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~g----~~viv~Dpkge~ 93 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLRG----DRMVIVDPNGDM 93 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHTT----CEEEEEEETTHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHCC----CcEEEEeCCCch
Confidence 4578999999999999975 33444433322 144444454444
No 143
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=92.47 E-value=0.37 Score=45.49 Aligned_cols=55 Identities=20% Similarity=0.170 Sum_probs=33.2
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHHHH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQE 125 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~~~ 125 (319)
..+++++|++|+|||+........ +... .+.+..++-.-|.|..+....+.+...
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~-l~~~-~G~kVllvd~D~~r~~a~~ql~~~~~~ 154 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKF-LREK-HKKKVLVVSADVYRPAAIKQLETLAEQ 154 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH-HHHT-SCCCEEEEECCCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH-HHHh-cCCeEEEEecCCCCccHHHHHHhhccc
Confidence 357888999999999887554432 2222 133455555567776665544444443
No 144
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=92.33 E-value=0.068 Score=46.98 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=19.6
Q ss_pred CCCCCcEEEecCCCCCccchhhH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l 88 (319)
.+.++.++|+||||||||+.+-.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~ 44 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIAS 44 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHH
Confidence 56788999999999999987643
No 145
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=92.20 E-value=0.047 Score=43.07 Aligned_cols=20 Identities=20% Similarity=0.150 Sum_probs=16.6
Q ss_pred CCCCcEEEecCCCCCccchh
Q psy496 67 PILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~ 86 (319)
..+.+++++||+|+|||..+
T Consensus 25 ~~~~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVA 44 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHH
T ss_pred CCCCcEEEECCCCccHHHHH
Confidence 45678999999999999654
No 146
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=91.80 E-value=0.053 Score=44.47 Aligned_cols=21 Identities=10% Similarity=0.238 Sum_probs=17.1
Q ss_pred CCCcEEEecCCCCCccchhhH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l 88 (319)
.++.++|+||+|||||+..-.
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~ 24 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNT 24 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 356789999999999986643
No 147
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=91.07 E-value=0.13 Score=42.71 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=18.1
Q ss_pred CcEEEecCCCCCccchhhHHHHHHH
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l 94 (319)
.+++|+||+|+|||+.+- .+...+
T Consensus 55 ~~~~l~G~~GtGKT~la~-~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLA-AIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHH-HHHHHH
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHH
Confidence 789999999999997653 333433
No 148
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=91.07 E-value=0.18 Score=42.95 Aligned_cols=31 Identities=32% Similarity=0.368 Sum_probs=24.0
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIA 96 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~ 96 (319)
.+.++.++|+|++|+|||+.....+.+....
T Consensus 27 l~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~ 57 (251)
T 2zts_A 27 FPEGTTVLLTGGTGTGKTTFAAQFIYKGAEE 57 (251)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 4567889999999999998877666654444
No 149
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=90.97 E-value=0.73 Score=44.23 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=18.2
Q ss_pred CCCCcEEEecCCCCCccchhhH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l 88 (319)
..++.+.|.|++|||||+.+-.
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~ 312 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGK 312 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHH
T ss_pred cCCeEEEEECCCcccHHHHHHH
Confidence 4567899999999999987644
No 150
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=90.88 E-value=0.06 Score=52.13 Aligned_cols=23 Identities=26% Similarity=0.211 Sum_probs=18.8
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
.....+++++|+||||||||+..
T Consensus 255 ~~v~~g~~i~I~GptGSGKTTlL 277 (511)
T 2oap_1 255 LAIEHKFSAIVVGETASGKTTTL 277 (511)
T ss_dssp HHHHTTCCEEEEESTTSSHHHHH
T ss_pred HHHhCCCEEEEECCCCCCHHHHH
Confidence 34456788999999999999765
No 151
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=90.82 E-value=0.14 Score=43.47 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=21.9
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDD 93 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~ 93 (319)
.+.++.++|.||+|||||+.....+...
T Consensus 20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 20 IPERNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp EETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567889999999999998865554443
No 152
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=90.56 E-value=0.19 Score=42.14 Aligned_cols=30 Identities=27% Similarity=0.164 Sum_probs=22.8
Q ss_pred Hhhh-cCCCCCcEEEecCCCCCccchhhHHH
Q psy496 61 KCLT-LSPILSPSIIYTSTGCGKTTQVPQFI 90 (319)
Q Consensus 61 ~~l~-~~~~~~~vli~apTGSGKT~~~~l~i 90 (319)
+++. -.+.++.++|.||+|||||+.....+
T Consensus 14 ~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~ 44 (235)
T 2w0m_A 14 KLIQGGIPQGFFIALTGEPGTGKTIFSLHFI 44 (235)
T ss_dssp GGGTTSEETTCEEEEECSTTSSHHHHHHHHH
T ss_pred HHhcCCCcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 4443 46678899999999999998765544
No 153
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=90.51 E-value=0.18 Score=45.35 Aligned_cols=20 Identities=30% Similarity=0.338 Sum_probs=16.6
Q ss_pred CCCCcEEEecCCCCCccchh
Q psy496 67 PILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~ 86 (319)
....+++|+||+|+|||+.+
T Consensus 53 ~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHH
Confidence 44568999999999999765
No 154
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=90.43 E-value=0.086 Score=42.53 Aligned_cols=21 Identities=24% Similarity=0.346 Sum_probs=17.1
Q ss_pred CCCCcEEEecCCCCCccchhh
Q psy496 67 PILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~ 87 (319)
....+++|+||+|+|||+.+-
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~ 61 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVE 61 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHH
Confidence 345779999999999997653
No 155
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.40 E-value=0.087 Score=43.67 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=17.8
Q ss_pred CCCCcEEEecCCCCCccchhhH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l 88 (319)
..++.+.|.||+|||||+..-.
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~ 26 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRA 26 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHH
Confidence 3567899999999999987643
No 156
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=90.26 E-value=0.11 Score=43.62 Aligned_cols=22 Identities=18% Similarity=0.077 Sum_probs=18.0
Q ss_pred CCCCcEEEecCCCCCccchhhH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l 88 (319)
+.+..++|+||+|||||+..-.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~ 27 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREA 27 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHH
T ss_pred CCCcEEEEECcCCCCHHHHHHH
Confidence 4567899999999999987543
No 157
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=90.23 E-value=0.082 Score=43.00 Aligned_cols=22 Identities=36% Similarity=0.523 Sum_probs=18.3
Q ss_pred CCCCcEEEecCCCCCccchhhH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l 88 (319)
+.++.+.+.||+|||||+.+-.
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 4567899999999999987653
No 158
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=90.19 E-value=0.087 Score=43.17 Aligned_cols=22 Identities=18% Similarity=0.096 Sum_probs=18.0
Q ss_pred CCCCCcEEEecCCCCCccchhh
Q psy496 66 SPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~ 87 (319)
...++.++|.||+|||||+..-
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~ 27 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAE 27 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHH
Confidence 4457789999999999998653
No 159
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=90.12 E-value=0.095 Score=43.60 Aligned_cols=24 Identities=25% Similarity=0.176 Sum_probs=17.9
Q ss_pred cCCCCCcEEEecCCCCCccchhhH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l 88 (319)
....+..++|.|++|||||+..-.
T Consensus 21 ~~~~~~~i~l~G~~GsGKsTl~~~ 44 (199)
T 3vaa_A 21 QSNAMVRIFLTGYMGAGKTTLGKA 44 (199)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHH
T ss_pred ecCCCCEEEEEcCCCCCHHHHHHH
Confidence 345567899999999999987643
No 160
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=90.07 E-value=0.094 Score=43.79 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=16.4
Q ss_pred CCCcEEEecCCCCCccchhhH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l 88 (319)
.++.+.|.||+|||||+..-+
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~ 23 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKK 23 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 356799999999999987644
No 161
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=90.02 E-value=0.094 Score=48.33 Aligned_cols=27 Identities=22% Similarity=0.164 Sum_probs=21.2
Q ss_pred HhhhcCCCCCcEEEecCCCCCccchhh
Q psy496 61 KCLTLSPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 61 ~~l~~~~~~~~vli~apTGSGKT~~~~ 87 (319)
++-...+.++.++|+||||||||+.+-
T Consensus 167 ~l~~~i~~G~~i~ivG~sGsGKSTll~ 193 (361)
T 2gza_A 167 FLRRAVQLERVIVVAGETGSGKTTLMK 193 (361)
T ss_dssp HHHHHHHTTCCEEEEESSSSCHHHHHH
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHH
Confidence 344455678999999999999998653
No 162
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.94 E-value=1.1 Score=43.24 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=30.0
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHHHHHH
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~~~~~ 123 (319)
.+++++|++|+|||+.+...... +... +....++-.-|.|..+....+.+.
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~-l~~~--G~kVllVd~D~~r~aa~~qL~~~~ 152 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYY-YQRK--GWKTCLICADTFRAGAFDQLKQNA 152 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH-HHHT--TCCEEEEEECCSSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH-HHhC--CCeEEEEeccccchhHHHHHHHHh
Confidence 46888999999999887554432 2222 233445554456666544433333
No 163
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=89.83 E-value=0.1 Score=42.88 Aligned_cols=20 Identities=30% Similarity=0.509 Sum_probs=16.1
Q ss_pred CCcEEEecCCCCCccchhhH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l 88 (319)
++.+.|.||+|||||+..-.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~ 20 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKK 20 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35688999999999987543
No 164
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=89.49 E-value=0.12 Score=43.80 Aligned_cols=28 Identities=21% Similarity=0.224 Sum_probs=18.2
Q ss_pred HhhhcCCCCCcEEEecCCCCCccchhhH
Q psy496 61 KCLTLSPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 61 ~~l~~~~~~~~vli~apTGSGKT~~~~l 88 (319)
++=...+.++.+.|.||+|||||+.+-+
T Consensus 15 ~isl~i~~G~~~~lvGpsGsGKSTLl~~ 42 (218)
T 1z6g_A 15 VPRGSMNNIYPLVICGPSGVGKGTLIKK 42 (218)
T ss_dssp -------CCCCEEEECSTTSSHHHHHHH
T ss_pred CCceecCCCCEEEEECCCCCCHHHHHHH
Confidence 3334456788999999999999987643
No 165
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=89.36 E-value=0.11 Score=41.94 Aligned_cols=18 Identities=22% Similarity=0.252 Sum_probs=15.3
Q ss_pred CcEEEecCCCCCccchhh
Q psy496 70 SPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~ 87 (319)
..++|+|++|||||+..-
T Consensus 4 ~~i~l~G~~GsGKST~a~ 21 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVR 21 (178)
T ss_dssp CEEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 568999999999998763
No 166
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=89.36 E-value=0.1 Score=41.59 Aligned_cols=18 Identities=22% Similarity=0.226 Sum_probs=15.0
Q ss_pred cEEEecCCCCCccchhhH
Q psy496 71 PSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l 88 (319)
.++|+|++|||||+..-.
T Consensus 3 ~I~l~G~~GsGKsT~a~~ 20 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKL 20 (179)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987643
No 167
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=89.27 E-value=0.12 Score=42.77 Aligned_cols=22 Identities=18% Similarity=0.105 Sum_probs=17.7
Q ss_pred CCCCcEEEecCCCCCccchhhH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l 88 (319)
..+..+.|.||+|||||+..-.
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~ 25 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKR 25 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHH
Confidence 3567899999999999987643
No 168
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=89.25 E-value=0.086 Score=42.49 Aligned_cols=21 Identities=29% Similarity=0.376 Sum_probs=17.3
Q ss_pred CCCCcEEEecCCCCCccchhh
Q psy496 67 PILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~ 87 (319)
....+++|+||+|+|||+..-
T Consensus 41 ~~~~~vll~G~~G~GKT~la~ 61 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVE 61 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHH
Confidence 446789999999999997654
No 169
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.21 E-value=0.13 Score=47.36 Aligned_cols=21 Identities=24% Similarity=0.302 Sum_probs=17.4
Q ss_pred CCCCcEEEecCCCCCccchhh
Q psy496 67 PILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~ 87 (319)
..++.++|+||||||||+..-
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~ 141 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLA 141 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHH
Confidence 445689999999999997753
No 170
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=89.14 E-value=0.13 Score=47.60 Aligned_cols=23 Identities=22% Similarity=0.375 Sum_probs=19.2
Q ss_pred CCCCCcEEEecCCCCCccchhhH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l 88 (319)
...++.++|+||||||||+..-.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~ 155 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIAS 155 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHH
Confidence 45678999999999999987644
No 171
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=89.12 E-value=0.15 Score=43.43 Aligned_cols=23 Identities=26% Similarity=0.479 Sum_probs=14.8
Q ss_pred CCCCCcEEEecCCCCCccchhhH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l 88 (319)
.+.++.+.|.||+|||||+..-.
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~ 46 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANK 46 (231)
T ss_dssp EECCCEEEEECSCC----CHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHH
Confidence 44677899999999999988643
No 172
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.05 E-value=0.13 Score=41.34 Aligned_cols=19 Identities=21% Similarity=0.198 Sum_probs=15.9
Q ss_pred CCcEEEecCCCCCccchhh
Q psy496 69 LSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~ 87 (319)
+..+.|.|+.|||||+..-
T Consensus 4 ~~~i~l~G~~GsGKSTl~~ 22 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGR 22 (173)
T ss_dssp CCCEEEECCTTSCHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 4579999999999998653
No 173
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=88.89 E-value=0.18 Score=43.81 Aligned_cols=21 Identities=29% Similarity=0.507 Sum_probs=17.1
Q ss_pred CCCCCcEEEecCCCCCccchh
Q psy496 66 SPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~ 86 (319)
+..+.+++|+||+|+|||..+
T Consensus 26 ~~~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 26 APLDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp TTSCSCEEEECCTTSCHHHHH
T ss_pred hCCCCCEEEECCCCCcHHHHH
Confidence 345578999999999999654
No 174
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.89 E-value=0.18 Score=46.71 Aligned_cols=24 Identities=25% Similarity=0.308 Sum_probs=19.3
Q ss_pred CCCcEEEecCCCCCccchhhHHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFIL 91 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il 91 (319)
.+.+++|.|+||||||+..-..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~ 57 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLL 57 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHH
T ss_pred ccCceEEEcCCCCCHHHHHHHHHH
Confidence 567899999999999987655443
No 175
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=88.85 E-value=0.13 Score=41.90 Aligned_cols=20 Identities=30% Similarity=0.328 Sum_probs=16.5
Q ss_pred CCcEEEecCCCCCccchhhH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l 88 (319)
..+++++|++|||||+..-.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~ 24 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQ 24 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 35789999999999987644
No 176
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=88.78 E-value=0.16 Score=42.62 Aligned_cols=21 Identities=24% Similarity=0.257 Sum_probs=17.8
Q ss_pred CCCCCcEEEecCCCCCccchh
Q psy496 66 SPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~ 86 (319)
...++.+.|.||+|||||+.+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLS 39 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHH
Confidence 456778999999999999865
No 177
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=88.74 E-value=0.15 Score=42.58 Aligned_cols=22 Identities=23% Similarity=0.505 Sum_probs=17.8
Q ss_pred CCCCcEEEecCCCCCccchhhH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l 88 (319)
..+..++|+||+|||||+..-.
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~ 31 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKK 31 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHH
Confidence 4567899999999999986543
No 178
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=88.67 E-value=1.2 Score=40.05 Aligned_cols=23 Identities=26% Similarity=0.365 Sum_probs=17.8
Q ss_pred CCCCcEEEecCCCCCccchhhHH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQF 89 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~ 89 (319)
..++.++++|++|+|||+.....
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~L 125 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKM 125 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 34567889999999999876443
No 179
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=88.52 E-value=0.14 Score=46.62 Aligned_cols=22 Identities=36% Similarity=0.353 Sum_probs=18.2
Q ss_pred cCCCCCcEEEecCCCCCccchh
Q psy496 65 LSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~ 86 (319)
..+.+++++|+||||||||+.+
T Consensus 167 ~i~~g~~v~i~G~~GsGKTTll 188 (330)
T 2pt7_A 167 GIAIGKNVIVCGGTGSGKTTYI 188 (330)
T ss_dssp HHHHTCCEEEEESTTSCHHHHH
T ss_pred hccCCCEEEEECCCCCCHHHHH
Confidence 3456789999999999999854
No 180
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.41 E-value=0.16 Score=46.32 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=15.8
Q ss_pred CCcEEEecCCCCCccchhh
Q psy496 69 LSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~ 87 (319)
+..++|+||||||||+...
T Consensus 40 ~~lIvI~GPTgsGKTtLa~ 58 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSI 58 (339)
T ss_dssp CEEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 4578999999999997653
No 181
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=88.41 E-value=0.15 Score=42.35 Aligned_cols=17 Identities=35% Similarity=0.622 Sum_probs=14.5
Q ss_pred CcEEEecCCCCCccchh
Q psy496 70 SPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~ 86 (319)
+.++|+||+|+|||+..
T Consensus 2 RpIVi~GPSG~GK~Tl~ 18 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 45899999999999764
No 182
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=88.32 E-value=0.24 Score=44.53 Aligned_cols=29 Identities=14% Similarity=0.024 Sum_probs=23.7
Q ss_pred HHhhhcCCCCCcEEEecCCCCCccchhhH
Q psy496 60 NKCLTLSPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 60 ~~~l~~~~~~~~vli~apTGSGKT~~~~l 88 (319)
+++-...+.++.+.|.||+|||||+.+-+
T Consensus 117 ~~vsl~i~~Ge~vaIvGpsGsGKSTLl~l 145 (305)
T 2v9p_A 117 KLWLKGIPKKNCLAFIGPPNTGKSMLCNS 145 (305)
T ss_dssp HHHHHTCTTCSEEEEECSSSSSHHHHHHH
T ss_pred ccceEEecCCCEEEEECCCCCcHHHHHHH
Confidence 35556788899999999999999977644
No 183
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=88.32 E-value=0.16 Score=47.81 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=18.2
Q ss_pred CCCCCcEEEecCCCCCccchhh
Q psy496 66 SPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~ 87 (319)
...++.++|+||||||||+..-
T Consensus 164 ~~~ggii~I~GpnGSGKTTlL~ 185 (418)
T 1p9r_A 164 KRPHGIILVTGPTGSGKSTTLY 185 (418)
T ss_dssp TSSSEEEEEECSTTSCHHHHHH
T ss_pred HhcCCeEEEECCCCCCHHHHHH
Confidence 3567789999999999998753
No 184
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=88.30 E-value=0.2 Score=42.27 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=15.7
Q ss_pred CCCcEEEecCCCCCccchh
Q psy496 68 ILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~ 86 (319)
.+..++|.||||||||+..
T Consensus 33 ~g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TTEEEEEECCCTTTTHHHH
T ss_pred CCEEEEEECCCCCCHHHHH
Confidence 4566899999999999665
No 185
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=88.29 E-value=0.38 Score=43.20 Aligned_cols=34 Identities=12% Similarity=-0.063 Sum_probs=26.3
Q ss_pred HHhhhcCCCCCcEEEecCCCCCccchhhHHHHHH
Q psy496 60 NKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDD 93 (319)
Q Consensus 60 ~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~ 93 (319)
++++.-.+.++.++|+|++|+|||+.....+.+.
T Consensus 59 D~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 59 DRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp HHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4555567788999999999999998766655544
No 186
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=88.26 E-value=0.19 Score=42.22 Aligned_cols=21 Identities=10% Similarity=0.169 Sum_probs=17.2
Q ss_pred CCCcEEEecCCCCCccchhhH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l 88 (319)
.++.++|+||+|+|||+..-.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~ 38 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNA 38 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHH
T ss_pred CCCEEEEECcCCCCHHHHHHH
Confidence 467799999999999986543
No 187
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=88.21 E-value=0.23 Score=45.14 Aligned_cols=39 Identities=18% Similarity=0.113 Sum_probs=24.2
Q ss_pred cccchhhHHHHHHhhhcCC-CCCcEEEecCCCCCccchhh
Q psy496 49 QPRRISAIALINKCLTLSP-ILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 49 Q~~~ip~~~~~~~~l~~~~-~~~~vli~apTGSGKT~~~~ 87 (319)
|......+..-.+.+.... .+..++++||+|+|||+.+-
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~ 88 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAM 88 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHH
Confidence 4444444333334443333 34689999999999997653
No 188
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=88.14 E-value=0.18 Score=41.01 Aligned_cols=21 Identities=29% Similarity=0.419 Sum_probs=17.1
Q ss_pred CCCcEEEecCCCCCccchhhH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l 88 (319)
...+++++|++|||||+..-.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~ 30 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKE 30 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHH
Confidence 346799999999999987643
No 189
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=88.07 E-value=0.16 Score=42.17 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=17.6
Q ss_pred CCCCcEEEecCCCCCccchhhH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l 88 (319)
..+..++|.|+.|||||+..-.
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~ 48 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHG 48 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 3567899999999999987643
No 190
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=88.06 E-value=0.14 Score=46.26 Aligned_cols=18 Identities=28% Similarity=0.202 Sum_probs=14.8
Q ss_pred CcEEEecCCCCCccchhh
Q psy496 70 SPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~ 87 (319)
..++|+||||||||+...
T Consensus 4 ~~i~i~GptgsGKt~la~ 21 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSV 21 (322)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCcCCHHHHHH
Confidence 457889999999997653
No 191
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=88.02 E-value=0.17 Score=42.39 Aligned_cols=23 Identities=17% Similarity=0.218 Sum_probs=17.7
Q ss_pred cCCCCCcEEEecCCCCCccchhh
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~ 87 (319)
....++.+.|.||+|||||+.+-
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~ 38 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVR 38 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHH
Confidence 45678899999999999998763
No 192
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=87.97 E-value=0.17 Score=43.22 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=18.0
Q ss_pred CCCCCcEEEecCCCCCccchhhH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l 88 (319)
.+.++.++|.||+|||||+.+-.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~ 35 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQA 35 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHH
Confidence 46778899999999999987543
No 193
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=87.93 E-value=0.16 Score=40.83 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=16.5
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
|+++|.|+.|||||++.-.
T Consensus 8 ~~i~l~G~~GsGKSTva~~ 26 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQE 26 (168)
T ss_dssp CEEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 6899999999999987643
No 194
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=87.93 E-value=0.38 Score=40.88 Aligned_cols=27 Identities=37% Similarity=0.394 Sum_probs=21.9
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFIL 91 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il 91 (319)
-.+.++.+.|.||+|||||+.+-..+.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 456788999999999999987765543
No 195
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=87.87 E-value=0.15 Score=44.34 Aligned_cols=18 Identities=39% Similarity=0.436 Sum_probs=14.9
Q ss_pred cEEEecCCCCCccchhhH
Q psy496 71 PSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l 88 (319)
.++|+||+|||||+..-.
T Consensus 3 li~I~G~~GSGKSTla~~ 20 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQ 20 (253)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHH
Confidence 478999999999987643
No 196
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=87.85 E-value=0.27 Score=40.94 Aligned_cols=31 Identities=26% Similarity=0.043 Sum_probs=23.9
Q ss_pred Hhhh-cCCCCCcEEEecCCCCCccchhhHHHH
Q psy496 61 KCLT-LSPILSPSIIYTSTGCGKTTQVPQFIL 91 (319)
Q Consensus 61 ~~l~-~~~~~~~vli~apTGSGKT~~~~l~il 91 (319)
+++. -.+.++.++|.||+|||||+.....+.
T Consensus 11 ~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 11 SLLGGGFAPGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp HHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred HhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4443 567788999999999999987765544
No 197
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=87.79 E-value=0.16 Score=41.02 Aligned_cols=21 Identities=14% Similarity=0.224 Sum_probs=17.0
Q ss_pred CCCcEEEecCCCCCccchhhH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l 88 (319)
.+..++|.|+.|||||+..-.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~ 27 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASE 27 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 356789999999999987643
No 198
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=87.77 E-value=0.15 Score=42.59 Aligned_cols=26 Identities=23% Similarity=-0.003 Sum_probs=19.8
Q ss_pred hhhcCCCCCcEEEecCCCCCccchhh
Q psy496 62 CLTLSPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 62 ~l~~~~~~~~vli~apTGSGKT~~~~ 87 (319)
++.....+..+.|+|++|||||+..-
T Consensus 14 ~~~~~~~~~~i~i~G~~GsGKSTl~~ 39 (207)
T 2qt1_A 14 LVPRGSKTFIIGISGVTNSGKTTLAK 39 (207)
T ss_dssp CCCCSCCCEEEEEEESTTSSHHHHHH
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHH
Confidence 34445566788999999999997653
No 199
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=87.73 E-value=0.32 Score=43.61 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=19.0
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEI 95 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~ 95 (319)
+.+++++||+|+|||..... +...+.
T Consensus 152 ~~~lll~G~~GtGKT~La~a-ia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAA-MAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred CceEEEECCCCCCHHHHHHH-HHHHHH
Confidence 57899999999999976543 334433
No 200
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=87.57 E-value=0.17 Score=40.81 Aligned_cols=17 Identities=24% Similarity=0.261 Sum_probs=14.6
Q ss_pred cEEEecCCCCCccchhh
Q psy496 71 PSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~ 87 (319)
.++++|++|||||+..-
T Consensus 4 ~I~i~G~~GsGKST~a~ 20 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAR 20 (181)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEecCCCCCHHHHHH
Confidence 57899999999998763
No 201
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=87.53 E-value=0.16 Score=40.57 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=15.1
Q ss_pred cEEEecCCCCCccchhhH
Q psy496 71 PSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l 88 (319)
.++|.|+.|||||+..-.
T Consensus 3 ~i~l~G~~GsGKsT~~~~ 20 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAK 20 (173)
T ss_dssp EEEEECSSSSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987643
No 202
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=87.38 E-value=0.18 Score=41.03 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=16.3
Q ss_pred CCcEEEecCCCCCccchhhH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l 88 (319)
+..++|+|++|||||+..-.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~ 22 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQL 22 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35689999999999987643
No 203
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=87.35 E-value=0.98 Score=44.97 Aligned_cols=14 Identities=0% Similarity=-0.128 Sum_probs=11.9
Q ss_pred CCCcEEEeCCcccc
Q psy496 275 GGAPILHIPGFTYP 288 (319)
Q Consensus 275 ~g~~LVFlp~R~~~ 288 (319)
++++|||++|+..+
T Consensus 445 ~~~vlVf~~t~~~a 458 (661)
T 2d7d_A 445 NERVLVTTLTKKMS 458 (661)
T ss_dssp TCEEEEECSSHHHH
T ss_pred CCeEEEEECCHHHH
Confidence 67899999998765
No 204
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=87.31 E-value=0.19 Score=41.12 Aligned_cols=20 Identities=25% Similarity=0.217 Sum_probs=16.7
Q ss_pred CCCcEEEecCCCCCccchhh
Q psy496 68 ILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~ 87 (319)
.+.+++|+|++|||||++.-
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~ 28 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAE 28 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 45679999999999998763
No 205
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=87.13 E-value=0.19 Score=43.29 Aligned_cols=20 Identities=25% Similarity=0.541 Sum_probs=16.3
Q ss_pred CCCcEEEecCCCCCccchhh
Q psy496 68 ILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~ 87 (319)
....++++||+|+|||+.+-
T Consensus 38 ~~~~vll~G~~GtGKT~la~ 57 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAK 57 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 34679999999999997653
No 206
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=87.05 E-value=0.2 Score=44.24 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.3
Q ss_pred CCCcEEEecCCCCCccchh
Q psy496 68 ILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~ 86 (319)
....+++.||+|+|||+.+
T Consensus 53 ~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCSEEEEESSSSSCHHHHH
T ss_pred CCCeEEEECcCCCCHHHHH
Confidence 4578999999999999765
No 207
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=86.88 E-value=0.21 Score=43.77 Aligned_cols=20 Identities=25% Similarity=0.330 Sum_probs=16.7
Q ss_pred CCCCcEEEecCCCCCccchh
Q psy496 67 PILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~ 86 (319)
.....++|+||+|+|||+.+
T Consensus 49 ~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHH
Confidence 45577999999999999665
No 208
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=86.88 E-value=0.19 Score=41.71 Aligned_cols=23 Identities=17% Similarity=0.056 Sum_probs=18.8
Q ss_pred CCCCCcEEEecCCCCCccchhhH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l 88 (319)
...+..+.|.||+|||||+..-.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~ 44 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACA 44 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHH
Confidence 45678899999999999987643
No 209
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=86.87 E-value=0.19 Score=45.43 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=15.0
Q ss_pred CcEEEecCCCCCccchhh
Q psy496 70 SPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~ 87 (319)
..++|+||||||||+...
T Consensus 11 ~~i~i~GptgsGKt~la~ 28 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAI 28 (316)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCccCHHHHHH
Confidence 458899999999997653
No 210
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=86.75 E-value=0.34 Score=42.77 Aligned_cols=31 Identities=23% Similarity=0.090 Sum_probs=24.6
Q ss_pred HHhhhcCCCCCcEEEecCCCCCccchhhHHH
Q psy496 60 NKCLTLSPILSPSIIYTSTGCGKTTQVPQFI 90 (319)
Q Consensus 60 ~~~l~~~~~~~~vli~apTGSGKT~~~~l~i 90 (319)
+++....+.++.++|.||+|||||+.....+
T Consensus 26 d~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia 56 (296)
T 1cr0_A 26 NDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (296)
T ss_dssp HHHHCSBCTTCEEEEEESTTSSHHHHHHHHH
T ss_pred HHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 3555667889999999999999998765543
No 211
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=86.61 E-value=0.37 Score=40.82 Aligned_cols=28 Identities=14% Similarity=0.122 Sum_probs=21.0
Q ss_pred HHHhhhcCCCCCcEEEecCCCCCccchh
Q psy496 59 INKCLTLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 59 ~~~~l~~~~~~~~vli~apTGSGKT~~~ 86 (319)
-+..+...++...+++.||+|+|||+.+
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 3445555666566999999999999765
No 212
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=86.59 E-value=0.17 Score=41.48 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=15.6
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
+.++|.||+|||||+..-.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~ 21 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKR 21 (189)
T ss_dssp EEEEEECSTTSSHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHH
Confidence 4578999999999987644
No 213
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=86.52 E-value=0.2 Score=41.82 Aligned_cols=20 Identities=30% Similarity=0.036 Sum_probs=16.5
Q ss_pred CCCcEEEecCCCCCccchhh
Q psy496 68 ILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~ 87 (319)
.+..+.|.||+|||||+..-
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~ 24 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQ 24 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHH
Confidence 45678899999999998763
No 214
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=86.47 E-value=0.24 Score=43.68 Aligned_cols=20 Identities=25% Similarity=0.285 Sum_probs=16.6
Q ss_pred CCCcEEEecCCCCCccchhh
Q psy496 68 ILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~ 87 (319)
...+++++||+|+|||+.+-
T Consensus 49 ~~~~vll~G~~GtGKT~la~ 68 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIAR 68 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 35689999999999997653
No 215
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=86.44 E-value=0.18 Score=42.71 Aligned_cols=23 Identities=17% Similarity=0.020 Sum_probs=19.2
Q ss_pred CCCCCcEEEecCCCCCccchhhH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l 88 (319)
...++.+.|.||+|||||+.+-+
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~ 41 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMA 41 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHH
Confidence 46788899999999999987644
No 216
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=86.42 E-value=0.22 Score=44.32 Aligned_cols=20 Identities=30% Similarity=0.526 Sum_probs=17.0
Q ss_pred CCCCcEEEecCCCCCccchh
Q psy496 67 PILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~ 86 (319)
..+..++++||+|||||+.+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHH
T ss_pred CCCceEEEECCCCcCHHHHH
Confidence 45678999999999999765
No 217
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=86.40 E-value=0.46 Score=42.97 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=16.0
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
+.+++.||+|+|||+.+-.
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ 70 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHI 70 (334)
T ss_dssp CCEEEESSTTSSHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHH
Confidence 6799999999999977533
No 218
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=86.39 E-value=0.2 Score=43.69 Aligned_cols=21 Identities=19% Similarity=0.202 Sum_probs=17.1
Q ss_pred CCCCcEEEecCCCCCccchhh
Q psy496 67 PILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~ 87 (319)
....+++++||+|+|||+.+-
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~ 82 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAA 82 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCcHHHHHH
Confidence 345689999999999997653
No 219
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=86.27 E-value=0.19 Score=40.93 Aligned_cols=20 Identities=30% Similarity=0.376 Sum_probs=16.4
Q ss_pred CCcEEEecCCCCCccchhhH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l 88 (319)
+..+++.|+.|||||+..-.
T Consensus 4 g~~I~l~G~~GsGKST~~~~ 23 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASR 23 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45689999999999987644
No 220
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=86.08 E-value=0.24 Score=41.59 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=21.0
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFI 90 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~i 90 (319)
-.+.++.+.|.||+|||||+.+...+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~ 46 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLA 46 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHH
Confidence 45678899999999999998765443
No 221
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=86.03 E-value=0.23 Score=42.86 Aligned_cols=19 Identities=21% Similarity=0.244 Sum_probs=15.6
Q ss_pred CCcEEEecCCCCCccchhh
Q psy496 69 LSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~ 87 (319)
...+++.||+|||||+.+-
T Consensus 45 ~~~vll~G~~GtGKT~la~ 63 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAK 63 (257)
T ss_dssp CCEEEEECCTTSCHHHHHH
T ss_pred CCeEEEECcCCCCHHHHHH
Confidence 3469999999999997653
No 222
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=85.99 E-value=1.2 Score=47.56 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=45.4
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHHhC-------CCCccEEEEecccHHHHHHHHHHHHHHhc
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIARN-------RGSECCIMVTQPRRISAIAIAERVAQERD 127 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~-------~~~~~~vl~~~Ptr~la~q~~~~~~~~~~ 127 (319)
.+-+...+|.|+-|||||.+...-++..+...+ .-..-.||++.=|+.+|..+..|+.+.+.
T Consensus 13 ~pl~g~~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~L~ 81 (1180)
T 1w36_B 13 LPLQGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSNIH 81 (1180)
T ss_dssp CCCSSCEEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHHHH
Confidence 344456699999999999887777777665321 11234788888999999999888877654
No 223
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=85.90 E-value=0.26 Score=45.04 Aligned_cols=19 Identities=32% Similarity=0.279 Sum_probs=16.3
Q ss_pred CCCcEEEecCCCCCccchh
Q psy496 68 ILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~ 86 (319)
...++++.||+|||||+.+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999765
No 224
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=85.82 E-value=0.24 Score=41.04 Aligned_cols=19 Identities=16% Similarity=0.324 Sum_probs=16.0
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
..++|+|+.|||||+..-.
T Consensus 19 ~~I~l~G~~GsGKSTla~~ 37 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEA 37 (202)
T ss_dssp SCEEEECSTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4699999999999987643
No 225
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=85.47 E-value=0.24 Score=40.41 Aligned_cols=20 Identities=25% Similarity=0.177 Sum_probs=16.3
Q ss_pred CCcEEEecCCCCCccchhhH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l 88 (319)
+..++++|+.|||||+..-.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~ 24 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQA 24 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45689999999999987643
No 226
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=85.46 E-value=0.27 Score=42.28 Aligned_cols=23 Identities=22% Similarity=0.085 Sum_probs=19.2
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
.....++.+.|.||+|||||+.+
T Consensus 26 l~i~~Ge~~~iiG~nGsGKSTLl 48 (235)
T 3tif_A 26 LNIKEGEFVSIMGPSGSGKSTML 48 (235)
T ss_dssp EEECTTCEEEEECSTTSSHHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHHH
Confidence 34567889999999999999764
No 227
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=85.44 E-value=0.41 Score=45.37 Aligned_cols=18 Identities=33% Similarity=0.519 Sum_probs=15.5
Q ss_pred CcEEEecCCCCCccchhh
Q psy496 70 SPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~ 87 (319)
.+++++||+|+|||+.+-
T Consensus 51 ~~vLL~GppGtGKTtlAr 68 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAE 68 (447)
T ss_dssp CEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCcHHHHHH
Confidence 579999999999997653
No 228
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=85.14 E-value=0.25 Score=44.85 Aligned_cols=18 Identities=22% Similarity=0.255 Sum_probs=15.2
Q ss_pred CcEEEecCCCCCccchhh
Q psy496 70 SPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~ 87 (319)
..++|+||||||||+...
T Consensus 6 ~~i~i~GptGsGKTtla~ 23 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAM 23 (323)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 468999999999997653
No 229
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=85.07 E-value=0.29 Score=43.42 Aligned_cols=20 Identities=20% Similarity=0.245 Sum_probs=16.3
Q ss_pred CCcEEEecCCCCCccchhhH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l 88 (319)
+..++|+||+|||||+..-.
T Consensus 33 ~~livl~G~sGsGKSTla~~ 52 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLRSA 52 (287)
T ss_dssp CEEEEEECCTTSCTHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 45688999999999987643
No 230
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=85.03 E-value=0.28 Score=41.23 Aligned_cols=19 Identities=26% Similarity=0.249 Sum_probs=15.9
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
..+.|.||+|||||+..-+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~ 24 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKA 24 (227)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999987643
No 231
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=85.02 E-value=0.26 Score=44.98 Aligned_cols=18 Identities=28% Similarity=0.159 Sum_probs=15.1
Q ss_pred CcEEEecCCCCCccchhh
Q psy496 70 SPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~ 87 (319)
..++|+||||||||+...
T Consensus 8 ~lI~I~GptgSGKTtla~ 25 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSI 25 (340)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred ceEEEECCCcCcHHHHHH
Confidence 368899999999997663
No 232
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=84.95 E-value=0.29 Score=40.02 Aligned_cols=21 Identities=24% Similarity=0.273 Sum_probs=17.0
Q ss_pred CCCcEEEecCCCCCccchhhH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l 88 (319)
++..++|.|++|||||+..-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEK 28 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHH
Confidence 345789999999999987643
No 233
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=84.92 E-value=0.44 Score=45.92 Aligned_cols=19 Identities=32% Similarity=0.611 Sum_probs=16.1
Q ss_pred CCcEEEecCCCCCccchhh
Q psy496 69 LSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~ 87 (319)
...++++||+|+|||+.+-
T Consensus 77 ~~~lLL~GppGtGKTtla~ 95 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAH 95 (516)
T ss_dssp CSEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3689999999999997654
No 234
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=84.88 E-value=0.27 Score=41.13 Aligned_cols=18 Identities=33% Similarity=0.431 Sum_probs=15.0
Q ss_pred cEEEecCCCCCccchhhH
Q psy496 71 PSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l 88 (319)
.++|+|++|||||+..-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQ 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999987644
No 235
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=84.85 E-value=0.3 Score=43.49 Aligned_cols=19 Identities=32% Similarity=0.473 Sum_probs=16.2
Q ss_pred CCCcEEEecCCCCCccchh
Q psy496 68 ILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~ 86 (319)
...+++|+||+|+|||+.+
T Consensus 37 ~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCCEEECCTTCCCHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 4468999999999999665
No 236
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=84.81 E-value=0.36 Score=40.88 Aligned_cols=31 Identities=19% Similarity=0.073 Sum_probs=23.5
Q ss_pred Hhh-hcCCCCCcEEEecCCCCCccchhhHHHH
Q psy496 61 KCL-TLSPILSPSIIYTSTGCGKTTQVPQFIL 91 (319)
Q Consensus 61 ~~l-~~~~~~~~vli~apTGSGKT~~~~l~il 91 (319)
+++ .-.+.++.++|.||+|||||+.....+.
T Consensus 15 ~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~ 46 (243)
T 1n0w_A 15 KLLQGGIETGSITEMFGEFRTGKTQICHTLAV 46 (243)
T ss_dssp HHTTTSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred HhhcCCCcCCeEEEEECCCCCcHHHHHHHHHH
Confidence 344 3456788999999999999987765544
No 237
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=84.54 E-value=0.85 Score=43.13 Aligned_cols=36 Identities=11% Similarity=-0.093 Sum_probs=27.3
Q ss_pred HHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHHH
Q psy496 60 NKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDEI 95 (319)
Q Consensus 60 ~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~ 95 (319)
++++.-.+.++.++|+|++|+|||+.....+.+...
T Consensus 188 D~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 188 DRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp HHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred HhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHH
Confidence 345555677889999999999999887766655443
No 238
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=84.49 E-value=0.28 Score=39.94 Aligned_cols=19 Identities=26% Similarity=0.377 Sum_probs=15.7
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
..++|.|++|||||+..-.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~ 22 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCAR 22 (196)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4588999999999987643
No 239
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=84.46 E-value=0.29 Score=41.41 Aligned_cols=19 Identities=32% Similarity=0.438 Sum_probs=16.0
Q ss_pred CCcEEEecCCCCCccchhh
Q psy496 69 LSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~ 87 (319)
...++|.|++|||||+..-
T Consensus 7 ~~~I~l~G~~GsGKsT~a~ 25 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSS 25 (227)
T ss_dssp CCEEEEEECTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 4568999999999998763
No 240
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=84.43 E-value=0.3 Score=39.60 Aligned_cols=20 Identities=25% Similarity=0.115 Sum_probs=16.6
Q ss_pred CCCcEEEecCCCCCccchhh
Q psy496 68 ILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~ 87 (319)
.+..+++.|+.|||||+..-
T Consensus 4 ~g~~i~l~G~~GsGKST~~~ 23 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSM 23 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 45678999999999998763
No 241
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=84.41 E-value=0.29 Score=40.97 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.0
Q ss_pred cEEEecCCCCCccchhhH
Q psy496 71 PSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l 88 (319)
+++|+|++|||||+..-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGER 19 (216)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999987644
No 242
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=84.40 E-value=0.3 Score=43.92 Aligned_cols=18 Identities=28% Similarity=0.451 Sum_probs=15.6
Q ss_pred CCcEEEecCCCCCccchh
Q psy496 69 LSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~ 86 (319)
...++++||+|+|||+.+
T Consensus 51 ~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCEEEEECSSSSCHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 467999999999999765
No 243
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=84.12 E-value=1.2 Score=39.86 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=18.1
Q ss_pred CCCCcEEEecCCCCCccchhhH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l 88 (319)
..++.+.+.||+|||||+..-.
T Consensus 98 ~~g~vi~lvG~nGsGKTTll~~ 119 (302)
T 3b9q_A 98 RKPAVIMIVGVNGGGKTTSLGK 119 (302)
T ss_dssp SSCEEEEEECCTTSCHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHH
Confidence 3567899999999999987644
No 244
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=84.01 E-value=0.31 Score=40.02 Aligned_cols=17 Identities=47% Similarity=0.501 Sum_probs=14.3
Q ss_pred cEEEecCCCCCccchhh
Q psy496 71 PSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~ 87 (319)
.+.|.||+|||||+.+-
T Consensus 2 ~i~l~G~nGsGKTTLl~ 18 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVK 18 (178)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999998753
No 245
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=83.98 E-value=0.37 Score=38.95 Aligned_cols=19 Identities=26% Similarity=0.204 Sum_probs=11.8
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
..++|.|+.|||||+..-.
T Consensus 6 ~~I~l~G~~GsGKST~a~~ 24 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHT 24 (183)
T ss_dssp CEEEEECCC----CHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999987643
No 246
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=83.91 E-value=0.4 Score=43.99 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=16.6
Q ss_pred CCCCcEEEecCCCCCccchh
Q psy496 67 PILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~ 86 (319)
....+++++||+|+|||+.+
T Consensus 70 ~~~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHH
T ss_pred cCCCCEEEECCCCCCHHHHH
Confidence 34568999999999999765
No 247
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=83.90 E-value=0.35 Score=41.62 Aligned_cols=23 Identities=22% Similarity=0.343 Sum_probs=19.3
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
...+.++.+.|.||+|||||+.+
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl 48 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLL 48 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHH
Confidence 34567889999999999999765
No 248
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=83.89 E-value=0.35 Score=38.67 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=15.6
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
..++|+|+.|||||+..-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRE 21 (173)
T ss_dssp CCEEEESCTTSSHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 3589999999999987643
No 249
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=83.83 E-value=0.75 Score=44.38 Aligned_cols=37 Identities=24% Similarity=0.312 Sum_probs=29.1
Q ss_pred HHhhh-cCCCCCcEEEecCCCCCccchhhHHHHHHHHH
Q psy496 60 NKCLT-LSPILSPSIIYTSTGCGKTTQVPQFILDDEIA 96 (319)
Q Consensus 60 ~~~l~-~~~~~~~vli~apTGSGKT~~~~l~il~~l~~ 96 (319)
+++.. ..+.++.++|.||+|||||+.....++..+..
T Consensus 29 d~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 29 DDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp HHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 35555 67889999999999999999887765565554
No 250
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=83.83 E-value=0.33 Score=43.79 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=15.9
Q ss_pred CCCcEEEecCCCCCccchh
Q psy496 68 ILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~ 86 (319)
....++++||+|+|||+.+
T Consensus 44 ~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCSEEEEESSSSSCHHHHH
T ss_pred CCceEEEECCCCccHHHHH
Confidence 3467999999999999665
No 251
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=83.74 E-value=0.3 Score=43.91 Aligned_cols=19 Identities=26% Similarity=0.517 Sum_probs=15.9
Q ss_pred CCCcEEEecCCCCCccchh
Q psy496 68 ILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~ 86 (319)
...+++++||+|+|||..+
T Consensus 44 ~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 44 GIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GGCCEEEECCGGGCTTHHH
T ss_pred CCceEEEECCCCccHHHHH
Confidence 3456999999999999765
No 252
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=83.73 E-value=0.36 Score=38.96 Aligned_cols=18 Identities=22% Similarity=0.263 Sum_probs=15.2
Q ss_pred cEEEecCCCCCccchhhH
Q psy496 71 PSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l 88 (319)
+++|.|+.|||||+..-.
T Consensus 6 ~i~i~G~~GsGKsTla~~ 23 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARA 23 (175)
T ss_dssp CEEEECCTTSCHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 589999999999987643
No 253
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=83.57 E-value=0.33 Score=41.74 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=14.1
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.++|.||+|||||+.+
T Consensus 51 g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLA 66 (254)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4999999999999765
No 254
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=83.54 E-value=0.31 Score=43.25 Aligned_cols=18 Identities=28% Similarity=0.185 Sum_probs=15.0
Q ss_pred CCcEEEecCCCCCccchh
Q psy496 69 LSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~ 86 (319)
...++++||+|+|||..+
T Consensus 36 p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CSEEEEEECTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356899999999999654
No 255
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=83.52 E-value=0.38 Score=39.62 Aligned_cols=20 Identities=25% Similarity=0.096 Sum_probs=16.6
Q ss_pred CCcEEEecCCCCCccchhhH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l 88 (319)
+..++|.|+.|||||+..-.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~ 23 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMN 23 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHH
Confidence 45689999999999988643
No 256
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=83.51 E-value=0.44 Score=40.54 Aligned_cols=23 Identities=22% Similarity=0.241 Sum_probs=18.2
Q ss_pred CCCCCcEEEecCCCCCccchhhH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l 88 (319)
..+.+.++|.||+||||++....
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~ 48 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEK 48 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHH
Confidence 34556788899999999988754
No 257
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=83.49 E-value=0.39 Score=38.96 Aligned_cols=19 Identities=21% Similarity=0.326 Sum_probs=15.6
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
..++|+|++|||||+..-.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~ 21 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRR 21 (184)
T ss_dssp CSEEEECSTTSSHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHH
Confidence 3589999999999987643
No 258
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=83.38 E-value=0.73 Score=42.11 Aligned_cols=34 Identities=24% Similarity=0.169 Sum_probs=25.3
Q ss_pred HHhhh--cCCCCCcEEEecCCCCCccchhhHHHHHH
Q psy496 60 NKCLT--LSPILSPSIIYTSTGCGKTTQVPQFILDD 93 (319)
Q Consensus 60 ~~~l~--~~~~~~~vli~apTGSGKT~~~~l~il~~ 93 (319)
+.++. -.+.++.++|.||+|||||+.....+...
T Consensus 50 D~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 50 DVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp HHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34454 45678899999999999998876655443
No 259
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=83.37 E-value=0.33 Score=39.41 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=15.1
Q ss_pred cEEEecCCCCCccchhhH
Q psy496 71 PSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l 88 (319)
.++|.|+.|||||+..-.
T Consensus 3 ~I~i~G~~GsGKsT~~~~ 20 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAK 20 (194)
T ss_dssp EEEEEECTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987644
No 260
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=83.35 E-value=1 Score=41.07 Aligned_cols=35 Identities=20% Similarity=0.090 Sum_probs=26.1
Q ss_pred HHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHH
Q psy496 60 NKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 60 ~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l 94 (319)
++++.-...++.++|.|++|+|||+.....+.+..
T Consensus 37 D~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 37 DNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp HHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred HHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34455567788999999999999987766555443
No 261
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=83.34 E-value=0.32 Score=42.96 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.4
Q ss_pred CcEEEecCCCCCccchhh
Q psy496 70 SPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~ 87 (319)
.++++.||+|+|||+.+-
T Consensus 48 ~~~ll~G~~GtGKt~la~ 65 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAK 65 (311)
T ss_dssp EEEEEESCSSSSHHHHHH
T ss_pred eEEEEECCCCcCHHHHHH
Confidence 479999999999997653
No 262
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=83.25 E-value=0.42 Score=40.58 Aligned_cols=22 Identities=23% Similarity=0.067 Sum_probs=18.7
Q ss_pred cCCCCCcEEEecCCCCCccchh
Q psy496 65 LSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~ 86 (319)
..+.++.+.|.||.|||||+.+
T Consensus 31 ~i~~Ge~~~iiG~NGsGKSTLl 52 (214)
T 1sgw_A 31 TIEKGNVVNFHGPNGIGKTTLL 52 (214)
T ss_dssp EEETTCCEEEECCTTSSHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 4567889999999999999765
No 263
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=83.25 E-value=0.57 Score=43.21 Aligned_cols=18 Identities=22% Similarity=0.372 Sum_probs=15.8
Q ss_pred CCcEEEecCCCCCccchh
Q psy496 69 LSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~ 86 (319)
..+++|+||+|+|||+.+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999765
No 264
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=83.20 E-value=0.39 Score=41.20 Aligned_cols=20 Identities=30% Similarity=0.439 Sum_probs=16.5
Q ss_pred CCcEEEecCCCCCccchhhH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l 88 (319)
...+.|.||+|||||+..-.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~ 46 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQR 46 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 46799999999999987643
No 265
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=83.15 E-value=1 Score=42.57 Aligned_cols=35 Identities=11% Similarity=0.014 Sum_probs=26.7
Q ss_pred HHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHH
Q psy496 60 NKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 60 ~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l 94 (319)
++++.-.+.++.++|.|++|+|||+.....+.+..
T Consensus 194 D~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 194 DRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp HHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred HhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45555677889999999999999987766555443
No 266
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=83.12 E-value=0.22 Score=43.25 Aligned_cols=19 Identities=21% Similarity=0.249 Sum_probs=15.6
Q ss_pred CCcEEEecCCCCCccchhh
Q psy496 69 LSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~ 87 (319)
...++++||+|+|||+.+-
T Consensus 44 ~~~vll~G~~GtGKT~la~ 62 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAK 62 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHH
T ss_pred CceEEEECCCCCcHHHHHH
Confidence 4569999999999997653
No 267
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=83.05 E-value=0.4 Score=42.39 Aligned_cols=23 Identities=22% Similarity=0.133 Sum_probs=19.3
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
...+.++.+.|.||+|||||+.+
T Consensus 29 l~i~~Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 29 MNIKRGEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp EEEETTSEEEEECCTTSSHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34567889999999999999765
No 268
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=83.04 E-value=0.86 Score=43.93 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=20.9
Q ss_pred CCCCcEEEecCCCCCccchhhHHHHHHH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l~il~~l 94 (319)
.+..+++|.|+||||||++.-..+...+
T Consensus 165 ~~~pHlLIaG~TGSGKSt~L~~li~sLl 192 (512)
T 2ius_A 165 AKMPHLLVAGTTGSGASVGVNAMILSML 192 (512)
T ss_dssp GGSCSEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3457899999999999987655444433
No 269
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=83.02 E-value=0.44 Score=40.07 Aligned_cols=20 Identities=25% Similarity=0.187 Sum_probs=16.6
Q ss_pred CCcEEEecCCCCCccchhhH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l 88 (319)
...++|.|+.|||||+..-.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~ 24 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCEL 24 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35689999999999987644
No 270
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=83.01 E-value=0.37 Score=39.44 Aligned_cols=18 Identities=33% Similarity=0.362 Sum_probs=15.4
Q ss_pred CcEEEecCCCCCccchhh
Q psy496 70 SPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~ 87 (319)
..++|+|++|||||+..-
T Consensus 13 ~~I~l~G~~GsGKsT~a~ 30 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCE 30 (199)
T ss_dssp CEEEEEECTTSSHHHHHH
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 468999999999998763
No 271
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=82.91 E-value=0.39 Score=41.22 Aligned_cols=24 Identities=21% Similarity=-0.011 Sum_probs=18.3
Q ss_pred cCCCCCcEEEecCCCCCccchhhH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l 88 (319)
..+.+..+-|.||.|||||+..-.
T Consensus 21 ~i~~g~iigI~G~~GsGKSTl~k~ 44 (245)
T 2jeo_A 21 QSMRPFLIGVSGGTASGKSTVCEK 44 (245)
T ss_dssp --CCSEEEEEECSTTSSHHHHHHH
T ss_pred cCCCCEEEEEECCCCCCHHHHHHH
Confidence 455667889999999999987643
No 272
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=82.89 E-value=0.41 Score=40.20 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=16.4
Q ss_pred CCcEEEecCCCCCccchhhH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l 88 (319)
+..+++.|+.|||||+..-.
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~ 23 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPN 23 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHH
Confidence 45689999999999987644
No 273
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=82.88 E-value=0.51 Score=43.33 Aligned_cols=32 Identities=22% Similarity=0.080 Sum_probs=23.4
Q ss_pred HHhhh--cCCCCCcEEEecCCCCCccchhhHHHH
Q psy496 60 NKCLT--LSPILSPSIIYTSTGCGKTTQVPQFIL 91 (319)
Q Consensus 60 ~~~l~--~~~~~~~vli~apTGSGKT~~~~l~il 91 (319)
+.++. -.+.+..++|.||+|||||+.....+.
T Consensus 50 D~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~ 83 (356)
T 3hr8_A 50 DIATGVGGYPRGRIVEIFGQESSGKTTLALHAIA 83 (356)
T ss_dssp HHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhccCCccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 34444 455678999999999999987655443
No 274
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=82.86 E-value=0.51 Score=37.95 Aligned_cols=22 Identities=23% Similarity=0.149 Sum_probs=18.6
Q ss_pred cCCCCCcEEEecCCCCCccchh
Q psy496 65 LSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~ 86 (319)
..+.++.+.|.||.|||||+.+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLT 50 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHH
Confidence 3477889999999999999765
No 275
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=82.61 E-value=0.39 Score=39.14 Aligned_cols=21 Identities=24% Similarity=0.101 Sum_probs=17.3
Q ss_pred CCCcEEEecCCCCCccchhhH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l 88 (319)
.+..+++.|+.|||||+..-.
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~ 32 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATR 32 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHH
Confidence 456789999999999987644
No 276
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=82.60 E-value=0.88 Score=37.67 Aligned_cols=47 Identities=13% Similarity=0.107 Sum_probs=32.8
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecccHHHHHHHH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIA 119 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Ptr~la~q~~ 119 (319)
.+..+|.|+-||+|+.....-++......++ .|.++.|+...+..+.
T Consensus 51 ~~~~iv~g~ggs~~~~~~~a~L~~~a~~~Gr----~V~vLAp~~~s~~~l~ 97 (189)
T 2l8b_A 51 PSLAIVSGQGGAAGQRERVAELVMMAREQGR----EVQIIAADRRSQMNMK 97 (189)
T ss_dssp CCEECCBCSSCSHHHHHHHHHHHHHHHHTTC----CEEEECSTTHHHHHHS
T ss_pred CceEEEecccchHHHHHHHHHHHHHHHhcCe----EEEEEcCchHHHHHHH
Confidence 3778889999999998865555544444332 6777779977665554
No 277
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=82.58 E-value=0.42 Score=43.69 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=16.3
Q ss_pred CCCcEEEecCCCCCccchhh
Q psy496 68 ILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~ 87 (319)
....++++||+|+|||+.+-
T Consensus 83 ~~~~iLL~GppGtGKT~la~ 102 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAK 102 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHH
T ss_pred CCceEEEECCCCCcHHHHHH
Confidence 34679999999999997653
No 278
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=82.54 E-value=0.38 Score=39.04 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=15.6
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
..++|+|++|||||+..-.
T Consensus 7 ~~I~l~G~~GsGKsT~~~~ 25 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCAN 25 (194)
T ss_dssp EEEEEEESTTSSHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHH
Confidence 3588999999999987643
No 279
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=82.49 E-value=0.54 Score=38.96 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=16.5
Q ss_pred CCcEEEecCCCCCccchhhH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l 88 (319)
++.+.|.||+|||||+.+-.
T Consensus 1 G~~i~i~G~nG~GKTTll~~ 20 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHK 20 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHH
T ss_pred CCEEEEECCCCChHHHHHHH
Confidence 35688999999999987644
No 280
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=82.45 E-value=0.4 Score=39.62 Aligned_cols=19 Identities=21% Similarity=0.183 Sum_probs=15.9
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
..++|.|+.|||||+..-.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~ 23 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATL 23 (213)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHH
Confidence 4688999999999987644
No 281
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=82.43 E-value=0.43 Score=42.78 Aligned_cols=21 Identities=24% Similarity=0.319 Sum_probs=17.5
Q ss_pred CCCcEEEecCCCCCccchhhH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l 88 (319)
.++.+.+.||+|||||+..-.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~ 121 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAK 121 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHH
Confidence 467899999999999987644
No 282
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=82.42 E-value=0.43 Score=43.60 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=17.1
Q ss_pred CCCCcEEEecCCCCCccchhh
Q psy496 67 PILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~ 87 (319)
.....++|+||+|+|||+.+-
T Consensus 115 ~~~~~vLl~GppGtGKT~la~ 135 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGK 135 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHH
Confidence 345789999999999997653
No 283
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=82.42 E-value=0.41 Score=38.01 Aligned_cols=17 Identities=24% Similarity=0.473 Sum_probs=14.6
Q ss_pred CcEEEecCCCCCccchh
Q psy496 70 SPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~ 86 (319)
...+|.||+|||||+.+
T Consensus 24 g~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 46789999999999774
No 284
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=82.33 E-value=0.44 Score=41.29 Aligned_cols=23 Identities=22% Similarity=0.031 Sum_probs=19.2
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
...+.++.+.|.||+|||||+.+
T Consensus 30 l~i~~Ge~~~i~G~nGsGKSTLl 52 (247)
T 2ff7_A 30 LSIKQGEVIGIVGRSGSGKSTLT 52 (247)
T ss_dssp EEEETTCEEEEECSTTSSHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34567889999999999999765
No 285
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=82.30 E-value=0.39 Score=44.17 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=15.3
Q ss_pred cEEEecCCCCCccchhhH
Q psy496 71 PSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l 88 (319)
..+|+||||||||+.+-.
T Consensus 25 ~~~i~G~NGaGKTTll~a 42 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLFEA 42 (365)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 678999999999988743
No 286
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=82.27 E-value=0.58 Score=37.81 Aligned_cols=18 Identities=22% Similarity=0.248 Sum_probs=15.1
Q ss_pred CcEEEecCCCCCccchhh
Q psy496 70 SPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~ 87 (319)
...+|.||+|||||+.+-
T Consensus 27 g~~~i~G~NGsGKStll~ 44 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGD 44 (182)
T ss_dssp SEEEEEECTTSSHHHHHH
T ss_pred CcEEEECCCCCCHHHHHH
Confidence 378899999999997753
No 287
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=82.24 E-value=0.45 Score=40.71 Aligned_cols=22 Identities=27% Similarity=0.144 Sum_probs=18.7
Q ss_pred cCCCCCcEEEecCCCCCccchh
Q psy496 65 LSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~ 86 (319)
..+.++.+.|.||+|||||+.+
T Consensus 30 ~i~~Ge~~~i~G~nGsGKSTLl 51 (229)
T 2pze_A 30 KIERGQLLAVAGSTGAGKTSLL 51 (229)
T ss_dssp EEETTCEEEEECCTTSSHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 4567889999999999999765
No 288
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=82.20 E-value=0.42 Score=40.70 Aligned_cols=22 Identities=23% Similarity=0.137 Sum_probs=18.5
Q ss_pred cCCCCCcEEEecCCCCCccchh
Q psy496 65 LSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~ 86 (319)
..+.++.+.|.||.|||||+.+
T Consensus 26 ~i~~Ge~~~iiG~nGsGKSTLl 47 (224)
T 2pcj_A 26 SVKKGEFVSIIGASGSGKSTLL 47 (224)
T ss_dssp EEETTCEEEEEECTTSCHHHHH
T ss_pred EEcCCCEEEEECCCCCCHHHHH
Confidence 4557788999999999999764
No 289
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=82.19 E-value=0.4 Score=38.16 Aligned_cols=18 Identities=17% Similarity=0.004 Sum_probs=14.9
Q ss_pred cEEEecCCCCCccchhhH
Q psy496 71 PSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l 88 (319)
.++|.|+.|||||+..-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSL 19 (168)
T ss_dssp EEEEESCTTSCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 478999999999987643
No 290
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=82.16 E-value=0.38 Score=45.02 Aligned_cols=18 Identities=33% Similarity=0.364 Sum_probs=14.7
Q ss_pred cEEEecCCCCCccchhhH
Q psy496 71 PSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l 88 (319)
.++|+||||||||+....
T Consensus 4 ~i~i~GptgsGKttla~~ 21 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQ 21 (409)
T ss_dssp EEEEEECSSSSHHHHHHH
T ss_pred EEEEECcchhhHHHHHHH
Confidence 578999999999976533
No 291
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=82.10 E-value=0.68 Score=43.78 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=16.5
Q ss_pred CCCcEEEecCCCCCccchhh
Q psy496 68 ILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~ 87 (319)
.+.++++.||+|+|||+.+-
T Consensus 62 ~~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEECCCcCCHHHHHH
Confidence 34679999999999997663
No 292
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=82.04 E-value=0.45 Score=39.40 Aligned_cols=21 Identities=19% Similarity=-0.020 Sum_probs=17.2
Q ss_pred CCCcEEEecCCCCCccchhhH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l 88 (319)
.+..++|+|+.|||||+..-.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~ 29 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKL 29 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHH
Confidence 356789999999999987644
No 293
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=82.03 E-value=0.93 Score=41.58 Aligned_cols=28 Identities=32% Similarity=0.293 Sum_probs=22.6
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDD 93 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~ 93 (319)
.+.+..++|.|++|||||+.....+.+.
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 5677899999999999998876655543
No 294
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=81.97 E-value=0.42 Score=41.27 Aligned_cols=23 Identities=22% Similarity=0.053 Sum_probs=19.4
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
...+.++.+.|.||+|||||+.+
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl 45 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIF 45 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34567889999999999999765
No 295
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=81.96 E-value=0.46 Score=41.49 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=19.6
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
...+.++.+.|.||+|||||+.+
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl 63 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIA 63 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHH
Confidence 44667889999999999999765
No 296
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=81.94 E-value=0.46 Score=41.09 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=17.9
Q ss_pred CCCCcEEEecCCCCCccchhhH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l 88 (319)
..+..+.|.||+|||||+..-+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~ 46 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKA 46 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHH
Confidence 4567899999999999987633
No 297
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=81.91 E-value=0.41 Score=39.65 Aligned_cols=17 Identities=29% Similarity=0.204 Sum_probs=14.4
Q ss_pred cEEEecCCCCCccchhh
Q psy496 71 PSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~ 87 (319)
.+.|.|+.|||||+..-
T Consensus 4 ~i~l~G~~GsGKST~~~ 20 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIAN 20 (206)
T ss_dssp EEEEECSTTSCHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47889999999998763
No 298
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=81.86 E-value=0.65 Score=41.75 Aligned_cols=22 Identities=23% Similarity=0.184 Sum_probs=18.7
Q ss_pred CCCCCcEEEecCCCCCccchhh
Q psy496 66 SPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~ 87 (319)
...+..+.|.||+|||||+.+-
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~ 108 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTAR 108 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHH
Confidence 5667889999999999998763
No 299
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=81.82 E-value=0.47 Score=40.85 Aligned_cols=23 Identities=26% Similarity=0.273 Sum_probs=19.1
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
...+.++.+.|.||+|||||+.+
T Consensus 27 l~i~~Ge~~~l~G~nGsGKSTLl 49 (240)
T 1ji0_A 27 LKVPRGQIVTLIGANGAGKTTTL 49 (240)
T ss_dssp EEEETTCEEEEECSTTSSHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34567888999999999999765
No 300
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=81.73 E-value=0.56 Score=41.07 Aligned_cols=26 Identities=15% Similarity=0.132 Sum_probs=21.3
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFIL 91 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il 91 (319)
.+.++.++|.||+|||||+.....+.
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~ 52 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAA 52 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 45778899999999999987765544
No 301
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=81.70 E-value=0.48 Score=41.27 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=19.1
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
...+.++.+.|.||+|||||+.+
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 28 ISVNKGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp CEEETTCEEEEECSTTSSHHHHH
T ss_pred EEEeCCCEEEEECCCCCCHHHHH
Confidence 34567889999999999999765
No 302
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=81.68 E-value=0.41 Score=39.58 Aligned_cols=17 Identities=29% Similarity=0.456 Sum_probs=14.4
Q ss_pred cEEEecCCCCCccchhh
Q psy496 71 PSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~ 87 (319)
.+.|+|+.|||||+..-
T Consensus 3 ~i~i~G~~GsGKSTl~~ 19 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQ 19 (204)
T ss_dssp EEEEEECTTSSHHHHHH
T ss_pred EEEEECCCCcCHHHHHH
Confidence 47899999999998653
No 303
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.56 E-value=0.43 Score=45.05 Aligned_cols=19 Identities=26% Similarity=0.433 Sum_probs=15.8
Q ss_pred CCCcEEEecCCCCCccchh
Q psy496 68 ILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~ 86 (319)
....+|+.||+|||||..+
T Consensus 214 ~prGvLLyGPPGTGKTllA 232 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLA 232 (434)
T ss_dssp CCCEEEEESCTTSSHHHHH
T ss_pred CCCeeEEECcCCCCHHHHH
Confidence 3567999999999999654
No 304
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=81.50 E-value=0.43 Score=39.11 Aligned_cols=18 Identities=28% Similarity=0.488 Sum_probs=15.0
Q ss_pred cEEEecCCCCCccchhhH
Q psy496 71 PSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l 88 (319)
.++|.|+.|||||+..-.
T Consensus 2 ~I~i~G~~GsGKsT~~~~ 19 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAE 19 (205)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCccCHHHHHHH
Confidence 478999999999987643
No 305
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=81.48 E-value=0.49 Score=39.04 Aligned_cols=19 Identities=26% Similarity=0.396 Sum_probs=15.8
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
..++|.|++|||||+..-.
T Consensus 21 ~~I~l~G~~GsGKST~a~~ 39 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVK 39 (201)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4689999999999987643
No 306
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=81.47 E-value=0.49 Score=41.55 Aligned_cols=23 Identities=22% Similarity=0.137 Sum_probs=19.2
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
.....++.+.|.||+|||||+.+
T Consensus 32 l~i~~Ge~~~liG~nGsGKSTLl 54 (266)
T 4g1u_C 32 LHIASGEMVAIIGPNGAGKSTLL 54 (266)
T ss_dssp EEEETTCEEEEECCTTSCHHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHHH
Confidence 34567889999999999999765
No 307
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=81.43 E-value=0.46 Score=39.21 Aligned_cols=18 Identities=33% Similarity=0.420 Sum_probs=15.1
Q ss_pred CcEEEecCCCCCccchhh
Q psy496 70 SPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~ 87 (319)
..++|+|+.|||||+..-
T Consensus 16 ~~I~l~G~~GsGKsT~~~ 33 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCE 33 (203)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 458899999999998763
No 308
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=81.41 E-value=0.49 Score=39.24 Aligned_cols=21 Identities=19% Similarity=0.112 Sum_probs=17.2
Q ss_pred CCCcEEEecCCCCCccchhhH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l 88 (319)
.+..++|+|+.|||||+..-.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~ 28 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRK 28 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 345789999999999988754
No 309
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=81.36 E-value=1.7 Score=39.89 Aligned_cols=22 Identities=27% Similarity=0.264 Sum_probs=18.1
Q ss_pred CCCCcEEEecCCCCCccchhhH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l 88 (319)
..++.+.+.||+|||||+..-.
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~ 176 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGK 176 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHH
Confidence 3567899999999999987644
No 310
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=81.19 E-value=0.51 Score=40.90 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=19.6
Q ss_pred hcCCCCCcEEEecCCCCCccchhh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~~ 87 (319)
.....++.+.|.||+|||||+.+-
T Consensus 24 l~i~~Ge~~~l~G~nGsGKSTLlk 47 (250)
T 2d2e_A 24 LVVPKGEVHALMGPNGAGKSTLGK 47 (250)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHH
Confidence 345678899999999999998753
No 311
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=81.19 E-value=0.49 Score=41.61 Aligned_cols=25 Identities=16% Similarity=0.017 Sum_probs=20.4
Q ss_pred hhhcCCCCCcEEEecCCCCCccchh
Q psy496 62 CLTLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 62 ~l~~~~~~~~vli~apTGSGKT~~~ 86 (319)
+-...+.++.+.|.||+|||||+.+
T Consensus 38 vsl~i~~Ge~~~i~G~nGsGKSTLl 62 (271)
T 2ixe_A 38 LTFTLYPGKVTALVGPNGSGKSTVA 62 (271)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHH
T ss_pred eEEEECCCCEEEEECCCCCCHHHHH
Confidence 3345678899999999999999765
No 312
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=81.17 E-value=0.46 Score=41.78 Aligned_cols=16 Identities=31% Similarity=0.580 Sum_probs=14.0
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.+++.||+|||||+.+
T Consensus 46 GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLA 61 (274)
T ss_dssp EEEEESSTTSCHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 3999999999999765
No 313
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=81.17 E-value=0.44 Score=39.89 Aligned_cols=18 Identities=28% Similarity=0.235 Sum_probs=15.0
Q ss_pred cEEEecCCCCCccchhhH
Q psy496 71 PSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l 88 (319)
+++|.|++|||||+..-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQF 19 (214)
T ss_dssp EEEEEESTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 378999999999987644
No 314
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=81.14 E-value=0.55 Score=40.85 Aligned_cols=20 Identities=25% Similarity=0.111 Sum_probs=17.5
Q ss_pred CCcEEEecCCCCCccchhhH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l 88 (319)
+++++|.|+.|||||+..-.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~ 67 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKI 67 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHH
Confidence 78999999999999987643
No 315
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=81.08 E-value=0.52 Score=41.24 Aligned_cols=23 Identities=26% Similarity=0.187 Sum_probs=19.4
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
.....++.+.|.||+|||||+.+
T Consensus 27 l~i~~Ge~~~liG~nGsGKSTLl 49 (262)
T 1b0u_A 27 LQARAGDVISIIGSSGSGKSTFL 49 (262)
T ss_dssp EEECTTCEEEEECCTTSSHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 34567889999999999999765
No 316
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=81.06 E-value=0.47 Score=41.51 Aligned_cols=16 Identities=25% Similarity=0.385 Sum_probs=14.1
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.++|.||+|||||+.+
T Consensus 75 gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLA 90 (278)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCcChHHHHH
Confidence 3999999999999765
No 317
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.04 E-value=0.49 Score=44.24 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=16.2
Q ss_pred CCCCcEEEecCCCCCccchh
Q psy496 67 PILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~ 86 (319)
+....+|+.||+|||||..+
T Consensus 180 ~~prGvLL~GPPGTGKTllA 199 (405)
T 4b4t_J 180 AQPKGVILYGPPGTGKTLLA 199 (405)
T ss_dssp CCCCCEEEESCSSSSHHHHH
T ss_pred CCCCceEEeCCCCCCHHHHH
Confidence 34567999999999999654
No 318
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=81.00 E-value=0.48 Score=38.47 Aligned_cols=18 Identities=33% Similarity=0.292 Sum_probs=14.9
Q ss_pred cEEEecCCCCCccchhhH
Q psy496 71 PSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l 88 (319)
.++|+|+.|||||+..-.
T Consensus 2 ~I~l~G~~GsGKsT~~~~ 19 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKK 19 (195)
T ss_dssp EEEEECSTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987643
No 319
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=80.98 E-value=0.49 Score=38.63 Aligned_cols=17 Identities=29% Similarity=0.345 Sum_probs=14.7
Q ss_pred EEEecCCCCCccchhhH
Q psy496 72 SIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 72 vli~apTGSGKT~~~~l 88 (319)
+++.|+.|||||+..-.
T Consensus 3 I~l~G~~GsGKsT~~~~ 19 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQL 19 (197)
T ss_dssp EEEECSTTSSHHHHHHH
T ss_pred EEEECCCCCCHHHHHHH
Confidence 68899999999988754
No 320
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=80.90 E-value=0.46 Score=39.45 Aligned_cols=21 Identities=24% Similarity=-0.091 Sum_probs=17.1
Q ss_pred CCCCcEEEecCCCCCccchhh
Q psy496 67 PILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~ 87 (319)
..+..+.|.|++|||||+..-
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~ 40 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLAN 40 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 345678899999999998764
No 321
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=80.84 E-value=0.59 Score=39.34 Aligned_cols=19 Identities=26% Similarity=0.401 Sum_probs=15.4
Q ss_pred cEEEecCCCCCccchhhHH
Q psy496 71 PSIIYTSTGCGKTTQVPQF 89 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l~ 89 (319)
++++.||+||||++.....
T Consensus 2 ~Iil~GpPGsGKgTqa~~L 20 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRL 20 (206)
T ss_dssp EEEEECSTTSSHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 3678999999999887553
No 322
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=80.79 E-value=0.68 Score=41.68 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=22.3
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILD 92 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~ 92 (319)
-.+.++.++|.||+|||||+.....+.+
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 4566789999999999999877665544
No 323
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=80.76 E-value=0.54 Score=41.25 Aligned_cols=24 Identities=21% Similarity=0.069 Sum_probs=20.0
Q ss_pred hcCCCCCcEEEecCCCCCccchhh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~~ 87 (319)
...+.++.+.|.||+|||||+.+-
T Consensus 41 l~i~~Ge~~~l~G~NGsGKSTLlk 64 (267)
T 2zu0_C 41 LDVHPGEVHAIMGPNGSGKSTLSA 64 (267)
T ss_dssp EEECTTCEEEEECCTTSSHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHH
Confidence 446778899999999999998753
No 324
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=80.73 E-value=1.3 Score=41.78 Aligned_cols=35 Identities=17% Similarity=0.071 Sum_probs=26.2
Q ss_pred HHhhhcCCCCCcEEEecCCCCCccchhhHHHHHHH
Q psy496 60 NKCLTLSPILSPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 60 ~~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~l 94 (319)
++++.-.+.++.++|+|++|+|||+.....+.+..
T Consensus 191 D~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 191 DQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp HHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred hhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 44555567788999999999999987766555443
No 325
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=80.60 E-value=0.88 Score=43.59 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=17.2
Q ss_pred CCCCCcEEEecCCCCCccchh
Q psy496 66 SPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~ 86 (319)
+.....++|+||+|+|||+.+
T Consensus 235 ~~~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHH
T ss_pred CCCCCcEEEECcCCCCHHHHH
Confidence 345577999999999999765
No 326
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=80.59 E-value=0.5 Score=39.47 Aligned_cols=23 Identities=13% Similarity=0.007 Sum_probs=18.6
Q ss_pred CCCCCcEEEecCCCCCccchhhH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l 88 (319)
...+..+++.|+.|||||+..-.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~ 44 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVE 44 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHH
Confidence 45567899999999999987643
No 327
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=80.53 E-value=0.55 Score=40.95 Aligned_cols=23 Identities=22% Similarity=0.024 Sum_probs=19.4
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
...+.++.+.|.||+|||||+.+
T Consensus 36 l~i~~Gei~~l~G~NGsGKSTLl 58 (256)
T 1vpl_A 36 FEIEEGEIFGLIGPNGAGKTTTL 58 (256)
T ss_dssp EEECTTCEEEEECCTTSSHHHHH
T ss_pred EEEcCCcEEEEECCCCCCHHHHH
Confidence 34567889999999999999765
No 328
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=80.48 E-value=0.56 Score=42.42 Aligned_cols=23 Identities=35% Similarity=0.339 Sum_probs=18.6
Q ss_pred CCCCCcEEEecCCCCCccchhhH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l 88 (319)
...+..++|+||+|+|||+..-.
T Consensus 42 ~~~~~~vli~G~~G~GKTtl~~~ 64 (386)
T 2qby_A 42 EEKPNNIFIYGLTGTGKTAVVKF 64 (386)
T ss_dssp TCCCCCEEEEECTTSSHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHH
Confidence 34567899999999999977643
No 329
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=80.44 E-value=0.49 Score=38.83 Aligned_cols=19 Identities=26% Similarity=0.149 Sum_probs=15.6
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
..+.|+|++|||||+..-.
T Consensus 9 ~~I~i~G~~GsGKST~~~~ 27 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAAL 27 (203)
T ss_dssp EEEEEEECTTSCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999987633
No 330
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=80.41 E-value=0.56 Score=41.06 Aligned_cols=23 Identities=22% Similarity=0.182 Sum_probs=19.4
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
.....++.+.|.||+|||||+.+
T Consensus 28 l~i~~Ge~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 28 LVINEGECLLVAGNTGSGKSTLL 50 (266)
T ss_dssp EEECTTCEEEEECSTTSSHHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHHH
Confidence 44667889999999999999765
No 331
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.36 E-value=0.5 Score=44.66 Aligned_cols=20 Identities=25% Similarity=0.341 Sum_probs=16.2
Q ss_pred CCCCcEEEecCCCCCccchh
Q psy496 67 PILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~ 86 (319)
+...-+|+.||+|||||+.+
T Consensus 213 ~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHH
Confidence 34467999999999999654
No 332
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=80.34 E-value=0.37 Score=43.22 Aligned_cols=18 Identities=22% Similarity=0.143 Sum_probs=15.7
Q ss_pred CCcEEEecCCCCCccchh
Q psy496 69 LSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~ 86 (319)
+.++++.||+|+|||...
T Consensus 46 ~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 46 GGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp TCCEEEESCCCHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999655
No 333
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=80.22 E-value=0.36 Score=46.50 Aligned_cols=19 Identities=11% Similarity=0.076 Sum_probs=16.0
Q ss_pred CCCcEEEecCCCCCccchh
Q psy496 68 ILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~ 86 (319)
.+.++++.||+|+|||..+
T Consensus 40 ~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 40 SGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HTCEEEEECCSSSSHHHHH
T ss_pred cCCeeEeecCchHHHHHHH
Confidence 4578999999999999654
No 334
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=80.22 E-value=0.56 Score=40.78 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=18.6
Q ss_pred cCCCCCcEEEecCCCCCccchh
Q psy496 65 LSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~ 86 (319)
..+.++.+.|.||+|||||+.+
T Consensus 27 ~i~~Ge~~~l~G~nGsGKSTLl 48 (253)
T 2nq2_C 27 DLNKGDILAVLGQNGCGKSTLL 48 (253)
T ss_dssp EEETTCEEEEECCSSSSHHHHH
T ss_pred EECCCCEEEEECCCCCCHHHHH
Confidence 4567888999999999999765
No 335
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=80.21 E-value=1 Score=42.77 Aligned_cols=22 Identities=18% Similarity=0.265 Sum_probs=17.6
Q ss_pred CCCCcEEEecCCCCCccchhhH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l 88 (319)
....++++.||+|+|||+.+-.
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~ 220 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEG 220 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHH
Confidence 4456899999999999976643
No 336
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.20 E-value=0.51 Score=44.47 Aligned_cols=19 Identities=32% Similarity=0.434 Sum_probs=15.7
Q ss_pred CCCcEEEecCCCCCccchh
Q psy496 68 ILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~ 86 (319)
...-+++.||+|||||..+
T Consensus 205 ~prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCCEEEEESCTTTTHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3466999999999999654
No 337
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=80.04 E-value=0.43 Score=41.27 Aligned_cols=21 Identities=24% Similarity=0.159 Sum_probs=16.7
Q ss_pred CCCcEEEecCCCCCccchhhH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l 88 (319)
.+..++++|++|||||+..-.
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~ 51 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRI 51 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345789999999999987533
No 338
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=80.01 E-value=0.59 Score=40.96 Aligned_cols=23 Identities=17% Similarity=0.172 Sum_probs=19.5
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
...+.++.+.|.||.|||||+.+
T Consensus 45 l~i~~Gei~~liG~NGsGKSTLl 67 (263)
T 2olj_A 45 VHIREGEVVVVIGPSGSGKSTFL 67 (263)
T ss_dssp EEECTTCEEEEECCTTSSHHHHH
T ss_pred EEEcCCCEEEEEcCCCCcHHHHH
Confidence 44567889999999999999765
No 339
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=79.98 E-value=0.59 Score=40.57 Aligned_cols=22 Identities=18% Similarity=0.093 Sum_probs=18.6
Q ss_pred cCCCCCcEEEecCCCCCccchh
Q psy496 65 LSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~ 86 (319)
....++.+.|.||.|||||+.+
T Consensus 22 ~i~~Ge~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 22 EVRAGEILHLVGPNGAGKSTLL 43 (249)
T ss_dssp EEETTCEEEEECCTTSSHHHHH
T ss_pred EEcCCCEEEEECCCCCcHHHHH
Confidence 4567888999999999999765
No 340
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=79.92 E-value=0.53 Score=40.50 Aligned_cols=21 Identities=29% Similarity=0.226 Sum_probs=17.3
Q ss_pred CCCcEEEecCCCCCccchhhH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l 88 (319)
..-.++|.|+.|||||+..-.
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~ 48 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLN 48 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHH
Confidence 445799999999999987644
No 341
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=79.89 E-value=0.54 Score=40.83 Aligned_cols=19 Identities=26% Similarity=0.233 Sum_probs=15.7
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
..++++|++|||||+..-.
T Consensus 5 ~lIvl~G~pGSGKSTla~~ 23 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKN 23 (260)
T ss_dssp EEEEEECCTTSSHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHH
Confidence 4588999999999987644
No 342
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=79.83 E-value=0.6 Score=41.28 Aligned_cols=23 Identities=30% Similarity=0.255 Sum_probs=19.3
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
...+.++.+.|.||+|||||+.+
T Consensus 42 l~i~~Ge~~~liG~NGsGKSTLl 64 (279)
T 2ihy_A 42 WQIAKGDKWILYGLNGAGKTTLL 64 (279)
T ss_dssp EEEETTCEEEEECCTTSSHHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHHH
Confidence 34567889999999999999765
No 343
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=79.70 E-value=0.85 Score=41.32 Aligned_cols=42 Identities=5% Similarity=-0.128 Sum_probs=28.4
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEeccc
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPR 111 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Pt 111 (319)
.+.+ .++|.||+|||||+..+..+.+.... . ...+++++..-
T Consensus 26 l~~G-iteI~G~pGsGKTtL~Lq~~~~~~~~-g--~g~~vlyId~E 67 (333)
T 3io5_A 26 MQSG-LLILAGPSKSFKSNFGLTMVSSYMRQ-Y--PDAVCLFYDSE 67 (333)
T ss_dssp BCSE-EEEEEESSSSSHHHHHHHHHHHHHHH-C--TTCEEEEEESS
T ss_pred CcCC-eEEEECCCCCCHHHHHHHHHHHHHhc-C--CCceEEEEecc
Confidence 4556 78999999999998877766554432 1 12367776543
No 344
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=79.67 E-value=0.53 Score=43.28 Aligned_cols=19 Identities=21% Similarity=0.247 Sum_probs=15.8
Q ss_pred CCcEEEecCCCCCccchhh
Q psy496 69 LSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~ 87 (319)
....+|+|+||+|||..+.
T Consensus 25 ~gl~vi~G~NGaGKT~ile 43 (371)
T 3auy_A 25 KGIVAIIGENGSGKSSIFE 43 (371)
T ss_dssp SEEEEEEECTTSSHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH
Confidence 3568999999999997754
No 345
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=79.39 E-value=0.34 Score=39.60 Aligned_cols=19 Identities=26% Similarity=0.253 Sum_probs=15.4
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
+.+.|+|++|||||+..-+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~ 21 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITR 21 (171)
T ss_dssp CEEEEEESCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3578899999999987644
No 346
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=79.33 E-value=0.83 Score=42.27 Aligned_cols=27 Identities=19% Similarity=0.064 Sum_probs=21.2
Q ss_pred hhhcCCCCCcEEEecCCCCCccchhhH
Q psy496 62 CLTLSPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 62 ~l~~~~~~~~vli~apTGSGKT~~~~l 88 (319)
+-...+.++.++|.||+|||||+..-.
T Consensus 162 ~~~~i~~~~~i~l~G~~GsGKSTl~~~ 188 (377)
T 1svm_A 162 MVYNIPKKRYWLFKGPIDSGKTTLAAA 188 (377)
T ss_dssp HHHCCTTCCEEEEECSTTSSHHHHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHHHHH
Confidence 334567788999999999999976543
No 347
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=79.32 E-value=0.83 Score=38.23 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=15.5
Q ss_pred cEEEecCCCCCccchhhHHH
Q psy496 71 PSIIYTSTGCGKTTQVPQFI 90 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l~i 90 (319)
..+++|+.|||||+.....+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~ 26 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMM 26 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 36899999999998764433
No 348
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=79.07 E-value=1.3 Score=40.82 Aligned_cols=34 Identities=24% Similarity=0.177 Sum_probs=24.4
Q ss_pred HHhhh--cCCCCCcEEEecCCCCCccchhhHHHHHH
Q psy496 60 NKCLT--LSPILSPSIIYTSTGCGKTTQVPQFILDD 93 (319)
Q Consensus 60 ~~~l~--~~~~~~~vli~apTGSGKT~~~~l~il~~ 93 (319)
+.++. -.+.+..++|.|++|||||+.....+.+.
T Consensus 63 D~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 63 DLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp HHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 34443 35577889999999999998766555443
No 349
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=78.98 E-value=0.42 Score=42.93 Aligned_cols=25 Identities=16% Similarity=0.065 Sum_probs=20.5
Q ss_pred hhhcCCCCCcEEEecCCCCCccchh
Q psy496 62 CLTLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 62 ~l~~~~~~~~vli~apTGSGKT~~~ 86 (319)
+-...+.++.+.|.||+|||||+.+
T Consensus 73 isl~i~~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 73 VSFTVMPGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp EEEEECTTCEEEEESSSCHHHHHHH
T ss_pred eeEEEcCCCEEEEECCCCchHHHHH
Confidence 3345678899999999999999875
No 350
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=78.91 E-value=0.61 Score=39.01 Aligned_cols=18 Identities=22% Similarity=0.215 Sum_probs=15.1
Q ss_pred CcEEEecCCCCCccchhh
Q psy496 70 SPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~ 87 (319)
..+.|.|+.|||||++.-
T Consensus 5 ~~I~i~G~~GSGKST~~~ 22 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVAN 22 (218)
T ss_dssp EEEEEECCTTSCHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999998653
No 351
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=78.91 E-value=0.59 Score=39.51 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=15.0
Q ss_pred cEEEecCCCCCccchhhH
Q psy496 71 PSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l 88 (319)
.+++.|+.|||||+..-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~ 19 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNL 19 (223)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 478999999999987644
No 352
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=78.59 E-value=0.65 Score=43.84 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=16.0
Q ss_pred CCCcEEEecCCCCCccchh
Q psy496 68 ILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~ 86 (319)
....++++||+|+|||+.+
T Consensus 166 ~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCSEEEEECSTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3467999999999999665
No 353
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=78.53 E-value=0.62 Score=41.43 Aligned_cols=21 Identities=14% Similarity=0.001 Sum_probs=16.8
Q ss_pred CCCCcEEEecCCCCCccchhh
Q psy496 67 PILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~ 87 (319)
..+..+.|+|++|||||+..-
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~ 49 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSI 49 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHH
Confidence 345678899999999998763
No 354
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=78.37 E-value=0.61 Score=38.76 Aligned_cols=20 Identities=20% Similarity=0.072 Sum_probs=16.1
Q ss_pred CCcEEEecCCCCCccchhhH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l 88 (319)
+..+.|+|+.|||||++.-.
T Consensus 12 ~~iIgltG~~GSGKSTva~~ 31 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEI 31 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 45688999999999987643
No 355
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=78.30 E-value=0.73 Score=39.14 Aligned_cols=20 Identities=30% Similarity=0.506 Sum_probs=16.4
Q ss_pred CCcEEEecCCCCCccchhhH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l 88 (319)
..++++.|++|||||+..-.
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~ 35 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPK 35 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHH
Confidence 35689999999999987644
No 356
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=78.26 E-value=1.4 Score=44.52 Aligned_cols=21 Identities=19% Similarity=0.294 Sum_probs=17.3
Q ss_pred CCCCcEEEecCCCCCccchhh
Q psy496 67 PILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~ 87 (319)
....++++.||+|+|||+.+-
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~ 219 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAE 219 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHH
Confidence 445679999999999997664
No 357
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=77.97 E-value=1.6 Score=42.65 Aligned_cols=42 Identities=21% Similarity=0.385 Sum_probs=27.2
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEeccc
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPR 111 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~Pt 111 (319)
..+++|.|.||||||.+.-..+++.+... .....+++++-|.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~-sP~ev~lilIDpK 255 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKS-TPSEARLIMIDPK 255 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTC-CTTTEEEEEECSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhC-CCcceEEEEeCCC
Confidence 46899999999999988765555443322 1223456665554
No 358
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=77.85 E-value=1 Score=42.02 Aligned_cols=29 Identities=10% Similarity=-0.007 Sum_probs=22.3
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDD 93 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~ 93 (319)
-.+.++.+.|.||+|||||+.....++..
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHh
Confidence 34567899999999999998876544443
No 359
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=77.75 E-value=0.79 Score=38.90 Aligned_cols=21 Identities=29% Similarity=0.279 Sum_probs=17.5
Q ss_pred CCCCCcEEEecCCCCCccchh
Q psy496 66 SPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~ 86 (319)
...+..+.|.|+.|||||+..
T Consensus 17 ~~~g~~i~i~G~~GsGKSTl~ 37 (230)
T 2vp4_A 17 GTQPFTVLIEGNIGSGKTTYL 37 (230)
T ss_dssp TCCCEEEEEECSTTSCHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHH
Confidence 356678999999999999864
No 360
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=77.45 E-value=1.6 Score=45.73 Aligned_cols=32 Identities=19% Similarity=0.259 Sum_probs=24.1
Q ss_pred hhcCCCCCcEEEecCCCCCccchhhHHHHHHHH
Q psy496 63 LTLSPILSPSIIYTSTGCGKTTQVPQFILDDEI 95 (319)
Q Consensus 63 l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~ 95 (319)
+.....+|.++|+|++|||||++.-+ +++.+.
T Consensus 138 M~~~~~nQsIiiSGESGAGKTestK~-im~yLa 169 (1052)
T 4anj_A 138 MKVLKLSQSIIVSGESGAGKTENTKF-VLRYLT 169 (1052)
T ss_dssp HHHHTCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred HHHhCCCceEEEecCCCCCHHHHHHH-HHHHHH
Confidence 34456789999999999999988754 444443
No 361
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=77.16 E-value=0.77 Score=40.83 Aligned_cols=22 Identities=27% Similarity=0.144 Sum_probs=18.8
Q ss_pred cCCCCCcEEEecCCCCCccchh
Q psy496 65 LSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~ 86 (319)
..+.++.+.|.||.|||||+.+
T Consensus 60 ~i~~Ge~~~i~G~NGsGKSTLl 81 (290)
T 2bbs_A 60 KIERGQLLAVAGSTGAGKTSLL 81 (290)
T ss_dssp EECTTCEEEEEESTTSSHHHHH
T ss_pred EEcCCCEEEEECCCCCcHHHHH
Confidence 4567889999999999999765
No 362
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=77.12 E-value=1 Score=39.89 Aligned_cols=20 Identities=20% Similarity=0.162 Sum_probs=13.0
Q ss_pred CCcEEEecCCCCCccchhhH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l 88 (319)
...+.|+||.|||||+..-.
T Consensus 5 ~~iIgItG~sGSGKSTva~~ 24 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHT 24 (290)
T ss_dssp SCEEEEESCC---CCTHHHH
T ss_pred ceEEEEECCCCCCHHHHHHH
Confidence 34578999999999987643
No 363
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.05 E-value=0.67 Score=44.07 Aligned_cols=20 Identities=25% Similarity=0.313 Sum_probs=16.4
Q ss_pred CCCCcEEEecCCCCCccchh
Q psy496 67 PILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~ 86 (319)
.....+|+.||+|||||+.+
T Consensus 241 ~pprGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHH
T ss_pred CCCCceEeeCCCCCcHHHHH
Confidence 34577999999999999554
No 364
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=77.03 E-value=1.8 Score=36.21 Aligned_cols=37 Identities=24% Similarity=0.111 Sum_probs=27.2
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEec
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQ 109 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~ 109 (319)
...++++.+++|.|||++++-..+..+-... +|++++
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~G~-----rV~~vQ 63 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGHGK-----NVGVVQ 63 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHTTC-----CEEEEE
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHCCC-----eEEEEE
Confidence 4568999999999999998777666653322 666663
No 365
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=76.98 E-value=0.8 Score=40.10 Aligned_cols=23 Identities=30% Similarity=0.245 Sum_probs=18.9
Q ss_pred hcCCCCCcEEEecCCCCCccchhh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~~ 87 (319)
...+ ++.+.|.||+|||||+.+-
T Consensus 26 l~i~-Ge~~~i~G~NGsGKSTLlk 48 (263)
T 2pjz_A 26 LEVN-GEKVIILGPNGSGKTTLLR 48 (263)
T ss_dssp EEEC-SSEEEEECCTTSSHHHHHH
T ss_pred EEEC-CEEEEEECCCCCCHHHHHH
Confidence 3456 8889999999999998753
No 366
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=76.62 E-value=0.73 Score=41.15 Aligned_cols=21 Identities=29% Similarity=0.147 Sum_probs=17.6
Q ss_pred CCCCcEEEecCCCCCccchhh
Q psy496 67 PILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~ 87 (319)
..+..+.|.||+|||||+..-
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~ 98 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTAR 98 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHH
Confidence 556788999999999998763
No 367
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=76.57 E-value=1 Score=36.75 Aligned_cols=25 Identities=16% Similarity=0.135 Sum_probs=17.4
Q ss_pred CcEEEecCCCCCccchhhHHHHHHHH
Q psy496 70 SPSIIYTSTGCGKTTQVPQFILDDEI 95 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~il~~l~ 95 (319)
..+.++|++|||||+.... ++..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~-L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEK-WVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHH-HHHHHH
T ss_pred EEEEEECCCCCCHHHHHHH-HHHhhH
Confidence 3578899999999986543 334433
No 368
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=76.50 E-value=0.73 Score=38.65 Aligned_cols=19 Identities=32% Similarity=0.361 Sum_probs=15.6
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
..+++.|++|||||+..-.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~ 24 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEF 24 (217)
T ss_dssp CEEEEEECTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3588999999999987643
No 369
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=76.48 E-value=0.83 Score=44.35 Aligned_cols=20 Identities=20% Similarity=0.109 Sum_probs=17.1
Q ss_pred CCCcEEEecCCCCCccchhh
Q psy496 68 ILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~ 87 (319)
.+..+++.||+|+|||+.+-
T Consensus 107 ~g~~vll~Gp~GtGKTtlar 126 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAK 126 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 57789999999999997653
No 370
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=76.47 E-value=0.8 Score=38.24 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=15.2
Q ss_pred CcEEEecCCCCCccchhh
Q psy496 70 SPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~ 87 (319)
...+|.||+|||||+.+-
T Consensus 24 ~~~~I~G~NgsGKStil~ 41 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLD 41 (203)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHH
Confidence 567899999999998754
No 371
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.42 E-value=0.78 Score=43.20 Aligned_cols=19 Identities=32% Similarity=0.403 Sum_probs=15.7
Q ss_pred CCCcEEEecCCCCCccchh
Q psy496 68 ILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~ 86 (319)
....+|+.||+|||||..+
T Consensus 215 ~prGvLLyGPPGTGKTlLA 233 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLA 233 (437)
T ss_dssp CCSEEEEESSTTTTHHHHH
T ss_pred CCCCCceECCCCchHHHHH
Confidence 3467999999999999654
No 372
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=76.14 E-value=0.81 Score=40.30 Aligned_cols=18 Identities=22% Similarity=0.278 Sum_probs=15.1
Q ss_pred cEEEecCCCCCccchhhH
Q psy496 71 PSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l 88 (319)
.++++|++|||||+..-.
T Consensus 4 ~I~l~G~~GsGKST~a~~ 21 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWARE 21 (301)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999987643
No 373
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=76.13 E-value=0.86 Score=39.27 Aligned_cols=22 Identities=18% Similarity=0.215 Sum_probs=17.7
Q ss_pred cCCCCCcEEEecCCCCCccchhh
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~ 87 (319)
..+. +.+.|.||+|||||+.+-
T Consensus 21 ~i~~-e~~~liG~nGsGKSTLl~ 42 (240)
T 2onk_A 21 EMGR-DYCVLLGPTGAGKSVFLE 42 (240)
T ss_dssp EECS-SEEEEECCTTSSHHHHHH
T ss_pred EECC-EEEEEECCCCCCHHHHHH
Confidence 3456 788999999999997653
No 374
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=75.71 E-value=0.88 Score=41.80 Aligned_cols=23 Identities=30% Similarity=0.309 Sum_probs=19.1
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
...+.++.+.|.||+|||||+..
T Consensus 25 l~i~~Ge~~~llGpsGsGKSTLL 47 (359)
T 3fvq_A 25 LSLDPGEILFIIGASGCGKTTLL 47 (359)
T ss_dssp EEECTTCEEEEEESTTSSHHHHH
T ss_pred EEEcCCCEEEEECCCCchHHHHH
Confidence 34567889999999999999764
No 375
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=75.55 E-value=1.4 Score=39.93 Aligned_cols=33 Identities=15% Similarity=0.097 Sum_probs=24.3
Q ss_pred HHhh-hcCCCCCcEEEecCCCCCccchhhHHHHH
Q psy496 60 NKCL-TLSPILSPSIIYTSTGCGKTTQVPQFILD 92 (319)
Q Consensus 60 ~~~l-~~~~~~~~vli~apTGSGKT~~~~l~il~ 92 (319)
+.++ +-.+.++.++|.||+|||||+.....+.+
T Consensus 112 D~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 112 DKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp HHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred HHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3444 24567888999999999999877655544
No 376
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=75.35 E-value=0.87 Score=37.42 Aligned_cols=18 Identities=17% Similarity=0.195 Sum_probs=15.1
Q ss_pred cEEEecCCCCCccchhhH
Q psy496 71 PSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l 88 (319)
.+.|+|+.|||||+..-.
T Consensus 4 ~i~i~G~~GsGKst~~~~ 21 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARR 21 (208)
T ss_dssp EEEEECSTTSSHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 578999999999987643
No 377
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=75.26 E-value=0.87 Score=39.19 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=15.1
Q ss_pred CcEEEecCCCCCccchhh
Q psy496 70 SPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~ 87 (319)
..+.|+|+.|||||+..-
T Consensus 23 ~iI~I~G~~GSGKST~a~ 40 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCA 40 (252)
T ss_dssp EEEEEECSTTSSHHHHHH
T ss_pred EEEEEECCCCCCHHHHHH
Confidence 358899999999998764
No 378
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=75.12 E-value=0.83 Score=44.90 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=18.5
Q ss_pred cCCCCCcEEEecCCCCCccchhh
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~ 87 (319)
....++.+++.||+|||||+.+-
T Consensus 56 ~i~~g~~vll~Gp~GtGKTtlar 78 (604)
T 3k1j_A 56 AANQKRHVLLIGEPGTGKSMLGQ 78 (604)
T ss_dssp HHHTTCCEEEECCTTSSHHHHHH
T ss_pred cccCCCEEEEEeCCCCCHHHHHH
Confidence 34456799999999999997653
No 379
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=75.11 E-value=1 Score=42.59 Aligned_cols=18 Identities=28% Similarity=0.344 Sum_probs=15.7
Q ss_pred CCcEEEecCCCCCccchh
Q psy496 69 LSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~ 86 (319)
..++++.||+|+|||+.+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 467999999999999765
No 380
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=75.02 E-value=1.3 Score=43.55 Aligned_cols=25 Identities=28% Similarity=0.114 Sum_probs=20.6
Q ss_pred hhhcCCCCCcEEEecCCCCCccchh
Q psy496 62 CLTLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 62 ~l~~~~~~~~vli~apTGSGKT~~~ 86 (319)
+-...+.++.+.|.||+|||||+..
T Consensus 374 isl~i~~G~~~~ivG~sGsGKSTll 398 (598)
T 3qf4_B 374 ITFHIKPGQKVALVGPTGSGKTTIV 398 (598)
T ss_dssp EEEECCTTCEEEEECCTTSSTTHHH
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHH
Confidence 3345678899999999999999765
No 381
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=74.92 E-value=4.8 Score=37.46 Aligned_cols=28 Identities=14% Similarity=0.063 Sum_probs=23.5
Q ss_pred HhhhcCCCCCcEEEecCCCCCccchhhH
Q psy496 61 KCLTLSPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 61 ~~l~~~~~~~~vli~apTGSGKT~~~~l 88 (319)
|++.....+|.+.|.||+|+|||+....
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~ 193 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQN 193 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHH
Confidence 5566677899999999999999987654
No 382
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=74.91 E-value=0.91 Score=41.10 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=15.4
Q ss_pred CcEEEecCCCCCccchhh
Q psy496 70 SPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~ 87 (319)
...+|.||+|||||+.+-
T Consensus 24 ~~~~i~G~NGsGKS~lle 41 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLD 41 (339)
T ss_dssp EEEEEECCTTSSHHHHHH
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 567899999999998764
No 383
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=74.91 E-value=1.2 Score=36.47 Aligned_cols=19 Identities=26% Similarity=0.261 Sum_probs=15.2
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
..++++|++|||||+....
T Consensus 7 ~~i~i~G~sGsGKTTl~~~ 25 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKK 25 (174)
T ss_dssp CEEEEECCTTSCHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHH
Confidence 4578999999999976543
No 384
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=74.77 E-value=0.85 Score=40.04 Aligned_cols=16 Identities=31% Similarity=0.482 Sum_probs=14.0
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
++.|.||+|||||+.+
T Consensus 4 ~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEESSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999765
No 385
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=74.62 E-value=0.41 Score=39.76 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=14.9
Q ss_pred cEEEecCCCCCccchhhH
Q psy496 71 PSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l 88 (319)
.++|.|+.|||||+..-.
T Consensus 2 ~I~i~G~~GsGKsTl~~~ 19 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEK 19 (214)
T ss_dssp EEEEEEEEEEEHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHH
Confidence 378899999999987644
No 386
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=74.48 E-value=1 Score=41.26 Aligned_cols=22 Identities=23% Similarity=0.092 Sum_probs=18.7
Q ss_pred cCCCCCcEEEecCCCCCccchh
Q psy496 65 LSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~ 86 (319)
..+.++.+.|.||+|||||+..
T Consensus 37 ~i~~Ge~~~llGpnGsGKSTLL 58 (355)
T 1z47_A 37 QIREGEMVGLLGPSGSGKTTIL 58 (355)
T ss_dssp EEETTCEEEEECSTTSSHHHHH
T ss_pred EECCCCEEEEECCCCCcHHHHH
Confidence 4567888999999999999765
No 387
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=74.14 E-value=1.1 Score=41.62 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=19.2
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
...+.++.+.|.||+|||||+..
T Consensus 24 l~i~~Ge~~~llGpsGsGKSTLL 46 (381)
T 3rlf_A 24 LDIHEGEFVVFVGPSGCGKSTLL 46 (381)
T ss_dssp EEECTTCEEEEECCTTSSHHHHH
T ss_pred EEECCCCEEEEEcCCCchHHHHH
Confidence 34567889999999999999764
No 388
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=73.98 E-value=1.4 Score=39.51 Aligned_cols=19 Identities=21% Similarity=0.356 Sum_probs=15.6
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
...+|.||+|||||+.+-.
T Consensus 25 g~~~i~G~NGsGKS~ll~a 43 (322)
T 1e69_A 25 RVTAIVGPNGSGKSNIIDA 43 (322)
T ss_dssp SEEEEECCTTTCSTHHHHH
T ss_pred CcEEEECCCCCcHHHHHHH
Confidence 3789999999999976543
No 389
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=73.94 E-value=1.1 Score=41.18 Aligned_cols=22 Identities=27% Similarity=0.309 Sum_probs=18.7
Q ss_pred cCCCCCcEEEecCCCCCccchh
Q psy496 65 LSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~ 86 (319)
..+.++.+.|.||+|||||+..
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLL 46 (359)
T 2yyz_A 25 EVKDGEFVALLGPSGCGKTTTL 46 (359)
T ss_dssp EECTTCEEEEECSTTSSHHHHH
T ss_pred EEcCCCEEEEEcCCCchHHHHH
Confidence 4567888999999999999765
No 390
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=73.68 E-value=1.1 Score=42.93 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=14.8
Q ss_pred CcEEEecCCCCCccchh
Q psy496 70 SPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~ 86 (319)
..++|.||+|+|||+.+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999765
No 391
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=73.63 E-value=1.1 Score=41.17 Aligned_cols=23 Identities=17% Similarity=0.068 Sum_probs=19.1
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
...+.++.+.|.||+|||||+..
T Consensus 24 l~i~~Ge~~~llGpnGsGKSTLL 46 (362)
T 2it1_A 24 LKIKDGEFMALLGPSGSGKSTLL 46 (362)
T ss_dssp EEECTTCEEEEECCTTSSHHHHH
T ss_pred EEECCCCEEEEECCCCchHHHHH
Confidence 34567888999999999999765
No 392
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=73.61 E-value=0.94 Score=39.88 Aligned_cols=20 Identities=15% Similarity=0.179 Sum_probs=16.2
Q ss_pred CcEEEecCCCCCccchhhHH
Q psy496 70 SPSIIYTSTGCGKTTQVPQF 89 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l~ 89 (319)
..+.|+|+.|||||++.-..
T Consensus 76 ~iI~I~G~~GSGKSTva~~L 95 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRL 95 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 45889999999999876443
No 393
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=73.52 E-value=1.3 Score=39.48 Aligned_cols=28 Identities=21% Similarity=0.046 Sum_probs=22.3
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILD 92 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~ 92 (319)
-.+.++.++|.|++|||||+.....+.+
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456788999999999999877665554
No 394
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=73.41 E-value=1.1 Score=41.67 Aligned_cols=25 Identities=20% Similarity=0.037 Sum_probs=20.6
Q ss_pred hhhcCCCCCcEEEecCCCCCccchh
Q psy496 62 CLTLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 62 ~l~~~~~~~~vli~apTGSGKT~~~ 86 (319)
+-...+.++.+.|.||+|||||+.+
T Consensus 40 vsl~i~~Ge~~~llGpsGsGKSTLL 64 (390)
T 3gd7_A 40 ISFSISPGQRVGLLGRTGSGKSTLL 64 (390)
T ss_dssp EEEEECTTCEEEEEESTTSSHHHHH
T ss_pred eeEEEcCCCEEEEECCCCChHHHHH
Confidence 3345678899999999999999865
No 395
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=73.39 E-value=1 Score=40.41 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=15.4
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
..++|+|+.|||||+..-.
T Consensus 5 ~v~~i~G~~GaGKTTll~~ 23 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRH 23 (318)
T ss_dssp EEEEEEESSSSSCHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHH
Confidence 3588999999999987533
No 396
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=73.34 E-value=1 Score=36.97 Aligned_cols=21 Identities=14% Similarity=0.109 Sum_probs=17.1
Q ss_pred CCCCCcEEEecCCCCCccchh
Q psy496 66 SPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~ 86 (319)
...+..+.|.|++|+|||+.+
T Consensus 23 ~~~~~~v~lvG~~g~GKSTLl 43 (210)
T 1pui_A 23 SDTGIEVAFAGRSNAGKSSAL 43 (210)
T ss_dssp CSCSEEEEEEECTTSSHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHH
Confidence 445677999999999999654
No 397
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=73.29 E-value=1.3 Score=42.44 Aligned_cols=33 Identities=15% Similarity=-0.102 Sum_probs=25.1
Q ss_pred HhhhcCCCCCcEEEecCCCCCccchhhHHHHHH
Q psy496 61 KCLTLSPILSPSIIYTSTGCGKTTQVPQFILDD 93 (319)
Q Consensus 61 ~~l~~~~~~~~vli~apTGSGKT~~~~l~il~~ 93 (319)
+++.-.+.++.++|.|++|+|||+.....+.+.
T Consensus 234 ~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~ 266 (503)
T 1q57_A 234 DKTLGARGGEVIMVTSGSGMVMSTFVRQQALQW 266 (503)
T ss_dssp HHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHH
T ss_pred HhhcccCCCeEEEEeecCCCCchHHHHHHHHHH
Confidence 444446678899999999999998776655543
No 398
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=73.14 E-value=1.2 Score=44.46 Aligned_cols=32 Identities=25% Similarity=0.199 Sum_probs=23.8
Q ss_pred hhcCCCCCcEEEecCCCCCccchhhHHHHHHHH
Q psy496 63 LTLSPILSPSIIYTSTGCGKTTQVPQFILDDEI 95 (319)
Q Consensus 63 l~~~~~~~~vli~apTGSGKT~~~~l~il~~l~ 95 (319)
+.....+|.++|+|++|||||++.-+ +++.+.
T Consensus 88 m~~~~~nQsIiisGESGAGKTe~tK~-i~~yla 119 (697)
T 1lkx_A 88 MRQSQENQCVIISGESGAGKTEASKK-IMQFLT 119 (697)
T ss_dssp HHHHCCCEEEEEECSTTSSHHHHHHH-HHHHHH
T ss_pred HHhcCCCcEEEecCCCCCCchhhHHH-HHHHHH
Confidence 33456789999999999999988654 344443
No 399
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=72.91 E-value=1.2 Score=43.47 Aligned_cols=23 Identities=17% Similarity=0.076 Sum_probs=19.7
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
...+.++.+.|.||+|||||+..
T Consensus 362 l~i~~G~~~~ivG~sGsGKSTll 384 (578)
T 4a82_A 362 LSIEKGETVAFVGMSGGGKSTLI 384 (578)
T ss_dssp EEECTTCEEEEECSTTSSHHHHH
T ss_pred EEECCCCEEEEECCCCChHHHHH
Confidence 44677899999999999999765
No 400
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=72.91 E-value=1.3 Score=37.59 Aligned_cols=23 Identities=17% Similarity=0.020 Sum_probs=17.7
Q ss_pred CCCCCcEEEecCCCCCccchhhH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l 88 (319)
...+..+.|.|+.|||||+..-.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~ 35 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKI 35 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHH
Confidence 34556789999999999987643
No 401
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=72.84 E-value=1.4 Score=40.12 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=23.6
Q ss_pred Hhh-hcCCCCCcEEEecCCCCCccchhhHHHH
Q psy496 61 KCL-TLSPILSPSIIYTSTGCGKTTQVPQFIL 91 (319)
Q Consensus 61 ~~l-~~~~~~~~vli~apTGSGKT~~~~l~il 91 (319)
+++ .-.+.++.+.|.||+|||||+.....+.
T Consensus 122 ~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~ 153 (349)
T 1pzn_A 122 KLLGGGIETQAITEVFGEFGSGKTQLAHTLAV 153 (349)
T ss_dssp HHHTSSEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred HHhcCCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444 3456788999999999999988765543
No 402
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=72.83 E-value=2.8 Score=35.89 Aligned_cols=37 Identities=19% Similarity=0.226 Sum_probs=23.7
Q ss_pred cEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEecc
Q psy496 71 PSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQP 110 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~P 110 (319)
++++.++.|+|||+........ +... +....++.+-|
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~-l~~~--G~~V~v~d~D~ 44 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHA-QLRQ--GVRVMAGVVET 44 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH-HHHT--TCCEEEEECCC
T ss_pred EEEEECCCCCcHHHHHHHHHHH-HHHC--CCCEEEEEeCC
Confidence 5889999999999886544333 2222 33455666555
No 403
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=72.73 E-value=1.5 Score=39.77 Aligned_cols=25 Identities=20% Similarity=0.066 Sum_probs=19.1
Q ss_pred CCCCCcEEEecCCCCCccchhhHHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFI 90 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~i 90 (319)
.+.+..++|.||+|+|||+......
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA 144 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALG 144 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHH
Confidence 4455678999999999997765543
No 404
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=72.69 E-value=1.2 Score=41.06 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=18.6
Q ss_pred cCCCCCcEEEecCCCCCccchh
Q psy496 65 LSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~ 86 (319)
..+.++.+.|.||+|||||+..
T Consensus 25 ~i~~Ge~~~llGpnGsGKSTLL 46 (372)
T 1g29_1 25 EVKDGEFMILLGPSGCGKTTTL 46 (372)
T ss_dssp EEETTCEEEEECSTTSSHHHHH
T ss_pred EEcCCCEEEEECCCCcHHHHHH
Confidence 3557788999999999999765
No 405
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=72.66 E-value=1.5 Score=42.92 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=20.8
Q ss_pred hhhcCCCCCcEEEecCCCCCccchhh
Q psy496 62 CLTLSPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 62 ~l~~~~~~~~vli~apTGSGKT~~~~ 87 (319)
+-...+.++.+.|.||+|||||+..-
T Consensus 363 isl~i~~G~~~~ivG~sGsGKSTLl~ 388 (595)
T 2yl4_A 363 FSLSIPSGSVTALVGPSGSGKSTVLS 388 (595)
T ss_dssp EEEEECTTCEEEEECCTTSSSTHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 33446788999999999999997653
No 406
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=72.60 E-value=1.1 Score=38.10 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=17.8
Q ss_pred CCCCcEEEecCCCCCccchhhH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l 88 (319)
..+..+++.|+.|||||+..-.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~ 45 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINE 45 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHH
Confidence 3566789999999999987644
No 407
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=72.52 E-value=1.6 Score=39.51 Aligned_cols=27 Identities=22% Similarity=0.166 Sum_probs=21.0
Q ss_pred hhhcCCCCCcEEEecCCCCCccchhhH
Q psy496 62 CLTLSPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 62 ~l~~~~~~~~vli~apTGSGKT~~~~l 88 (319)
+-.....+..+.|.|++|||||+.+-.
T Consensus 48 i~~~~~~g~~v~i~G~~GaGKSTLl~~ 74 (337)
T 2qm8_A 48 VLPQTGRAIRVGITGVPGVGKSTTIDA 74 (337)
T ss_dssp HGGGCCCSEEEEEECCTTSCHHHHHHH
T ss_pred CCcccCCCeEEEEECCCCCCHHHHHHH
Confidence 334456788999999999999986643
No 408
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=72.46 E-value=1.1 Score=38.48 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=15.7
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
-.+.|.||+|||||+..-.
T Consensus 10 ~~i~i~G~~GsGKsTla~~ 28 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRG 28 (233)
T ss_dssp CEEEEECCTTSSHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 4688999999999987643
No 409
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=72.28 E-value=1.2 Score=45.44 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=17.5
Q ss_pred CCCCCcEEEecCCCCCccchh
Q psy496 66 SPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~ 86 (319)
...+..++|+||+|||||+.+
T Consensus 235 i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 235 VKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCCeEEEECcCCCCHHHHH
Confidence 355678999999999999765
No 410
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=72.22 E-value=1.2 Score=40.34 Aligned_cols=17 Identities=29% Similarity=0.128 Sum_probs=14.6
Q ss_pred cEEEecCCCCCccchhh
Q psy496 71 PSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~ 87 (319)
.+-|.||+|||||+..-
T Consensus 94 iigI~GpsGSGKSTl~~ 110 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSR 110 (321)
T ss_dssp EEEEECCTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 57889999999998763
No 411
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=72.07 E-value=1.3 Score=40.94 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=19.2
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
...+.++.+.|.||+|||||+..
T Consensus 32 l~i~~Ge~~~llGpnGsGKSTLL 54 (372)
T 1v43_A 32 LTIKDGEFLVLLGPSGCGKTTTL 54 (372)
T ss_dssp EEECTTCEEEEECCTTSSHHHHH
T ss_pred EEECCCCEEEEECCCCChHHHHH
Confidence 34567889999999999999764
No 412
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=72.06 E-value=2.7 Score=42.67 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=20.8
Q ss_pred cCCCCCcEEEecCCCCCccchhhHH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQF 89 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~ 89 (319)
....+|.++|+|++|||||++.-+.
T Consensus 136 ~~~~nQsIiiSGESGAGKTe~tK~i 160 (784)
T 2v26_A 136 VLKLSQSIIVSGESGAGKTENTKFV 160 (784)
T ss_dssp HHTCCEEEEEECSTTSSHHHHHHHH
T ss_pred hcCCCcEEEEcCCCCCCceehHHHH
Confidence 3567899999999999999886543
No 413
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=71.45 E-value=1.1 Score=43.76 Aligned_cols=28 Identities=18% Similarity=0.124 Sum_probs=21.9
Q ss_pred HhhhcCCCCCcEEEecCCCCCccchhhH
Q psy496 61 KCLTLSPILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 61 ~~l~~~~~~~~vli~apTGSGKT~~~~l 88 (319)
++=...+.++.+.|.||+|||||+..-+
T Consensus 361 ~i~l~i~~G~~~~ivG~sGsGKSTll~~ 388 (582)
T 3b5x_A 361 HVSFSIPQGKTVALVGRSGSGKSTIANL 388 (582)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHH
Confidence 3434567889999999999999987533
No 414
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=71.19 E-value=1.8 Score=42.51 Aligned_cols=16 Identities=19% Similarity=0.310 Sum_probs=14.2
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
++++.||+|+|||..+
T Consensus 329 ~vLL~GppGtGKT~LA 344 (595)
T 3f9v_A 329 HILIIGDPGTAKSQML 344 (595)
T ss_dssp CEEEEESSCCTHHHHH
T ss_pred ceEEECCCchHHHHHH
Confidence 8999999999999543
No 415
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=71.17 E-value=1.5 Score=44.41 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=21.5
Q ss_pred hcCCCCCcEEEecCCCCCccchhhHH
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQVPQF 89 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~~l~ 89 (319)
.....+|.++|+|++|||||++.-+.
T Consensus 167 ~~~~~nQsIiisGESGAGKTe~tK~i 192 (770)
T 1w9i_A 167 LDDRQNQSLLITGESGAGKTENTKKV 192 (770)
T ss_dssp HHHCCCEEEEEECSTTSSHHHHHHHH
T ss_pred HhhcCCcEEEEecCCCCcchHHHHHH
Confidence 34567899999999999999987554
No 416
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=70.58 E-value=1.4 Score=43.04 Aligned_cols=24 Identities=21% Similarity=0.232 Sum_probs=20.0
Q ss_pred hcCCCCCcEEEecCCCCCccchhh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~~ 87 (319)
...+.++.+.|.||+|||||+..-
T Consensus 364 ~~i~~G~~~~ivG~sGsGKSTLl~ 387 (582)
T 3b60_A 364 LKIPAGKTVALVGRSGSGKSTIAS 387 (582)
T ss_dssp EEECTTCEEEEEECTTSSHHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHH
Confidence 446778999999999999997653
No 417
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=70.32 E-value=2 Score=46.35 Aligned_cols=27 Identities=22% Similarity=0.206 Sum_probs=21.6
Q ss_pred HhhhcCCCCCcEEEecCCCCCccchhh
Q psy496 61 KCLTLSPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 61 ~~l~~~~~~~~vli~apTGSGKT~~~~ 87 (319)
++-...+.++.+-|+|+||||||+...
T Consensus 1097 ~isl~I~~Ge~vaIVG~SGsGKSTL~~ 1123 (1321)
T 4f4c_A 1097 GLSFSVEPGQTLALVGPSGCGKSTVVA 1123 (1321)
T ss_dssp EEEEEECTTCEEEEECSTTSSTTSHHH
T ss_pred ceeEEECCCCEEEEECCCCChHHHHHH
Confidence 333456788999999999999998764
No 418
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=70.12 E-value=1.5 Score=40.37 Aligned_cols=26 Identities=19% Similarity=0.186 Sum_probs=20.9
Q ss_pred HhhhcCCCCCcEEEecCCCCCccchh
Q psy496 61 KCLTLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 61 ~~l~~~~~~~~vli~apTGSGKT~~~ 86 (319)
++-...+.++.+.|.||+|||||+.+
T Consensus 46 ~vsl~i~~Gei~~IiGpnGaGKSTLl 71 (366)
T 3tui_C 46 NVSLHVPAGQIYGVIGASGAGKSTLI 71 (366)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHH
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHH
Confidence 33345678899999999999999764
No 419
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=70.03 E-value=1.5 Score=42.91 Aligned_cols=23 Identities=26% Similarity=0.153 Sum_probs=19.6
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
...+.++.+.|.||+|||||+..
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll 386 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLM 386 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHH
Confidence 44677899999999999999765
No 420
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=70.01 E-value=1.8 Score=41.07 Aligned_cols=26 Identities=15% Similarity=-0.022 Sum_probs=21.1
Q ss_pred hhhcCCCCCcEEEecCCCCCccchhh
Q psy496 62 CLTLSPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 62 ~l~~~~~~~~vli~apTGSGKT~~~~ 87 (319)
+=.....++.+.|.||+|||||+..-
T Consensus 131 vsl~i~~Ge~v~IvGpnGsGKSTLlr 156 (460)
T 2npi_A 131 IRMSNFEGPRVVIVGGSQTGKTSLSR 156 (460)
T ss_dssp HHHHSSSCCCEEEEESTTSSHHHHHH
T ss_pred CceEeCCCCEEEEECCCCCCHHHHHH
Confidence 33456788999999999999998753
No 421
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=69.66 E-value=1 Score=41.21 Aligned_cols=22 Identities=27% Similarity=0.164 Sum_probs=18.7
Q ss_pred cCCCCCcEEEecCCCCCccchh
Q psy496 65 LSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~ 86 (319)
..+.++.+.|.||+|||||+..
T Consensus 22 ~i~~Ge~~~llGpnGsGKSTLL 43 (348)
T 3d31_A 22 KVESGEYFVILGPTGAGKTLFL 43 (348)
T ss_dssp EECTTCEEEEECCCTHHHHHHH
T ss_pred EEcCCCEEEEECCCCccHHHHH
Confidence 4567888999999999999765
No 422
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=69.54 E-value=2.3 Score=40.01 Aligned_cols=27 Identities=19% Similarity=-0.013 Sum_probs=20.2
Q ss_pred HhhhcCCCCCc--EEEecCCCCCccchhh
Q psy496 61 KCLTLSPILSP--SIIYTSTGCGKTTQVP 87 (319)
Q Consensus 61 ~~l~~~~~~~~--vli~apTGSGKT~~~~ 87 (319)
++-.....+.. +.|.||+|||||+.+-
T Consensus 32 ~vsl~i~~Gei~~vaLvG~nGaGKSTLln 60 (427)
T 2qag_B 32 LVNKSVSQGFCFNILCVGETGLGKSTLMD 60 (427)
T ss_dssp HHHHSCC-CCEEEEEEECSTTSSSHHHHH
T ss_pred CCceEecCCCeeEEEEECCCCCCHHHHHH
Confidence 34345677787 9999999999998653
No 423
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=69.53 E-value=1.7 Score=44.11 Aligned_cols=30 Identities=17% Similarity=0.154 Sum_probs=23.1
Q ss_pred hcCCCCCcEEEecCCCCCccchhhHHHHHHH
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~~l~il~~l 94 (319)
.....+|.++|+|++|||||++.-+. ++.+
T Consensus 166 ~~~~~nQsIiiSGESGAGKTe~tK~i-m~yl 195 (783)
T 4db1_A 166 LTDRENQSILITGESGAGKTVNTKRV-IQYF 195 (783)
T ss_dssp HHHTCCEEEEEECSTTSSHHHHHHHH-HHHH
T ss_pred HhhCCCceEEEeCCCCCCCchHHHHH-HHhh
Confidence 34567899999999999999987554 3444
No 424
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=69.50 E-value=1.7 Score=44.22 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=23.0
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHHH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDEI 95 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l~ 95 (319)
....+|.++|+|++|||||++.-+. ++.+.
T Consensus 152 ~~~~nQsIiisGESGAGKTe~tK~i-~~yla 181 (795)
T 1w7j_A 152 RDERNQSIIVSGESGAGKTVSAKYA-MRYFA 181 (795)
T ss_dssp HHTCCEEEEEECSTTSSHHHHHHHH-HHHHH
T ss_pred hcCCCeEEEEeCCCCCCcchHHHHH-HHHHH
Confidence 3467899999999999999886553 44443
No 425
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=69.48 E-value=1.5 Score=44.16 Aligned_cols=21 Identities=19% Similarity=0.276 Sum_probs=17.4
Q ss_pred CCCCcEEEecCCCCCccchhh
Q psy496 67 PILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~ 87 (319)
....+++++||+|+|||+.+-
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~ 225 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAE 225 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHH
T ss_pred cCCCCeEEEcCCCCCHHHHHH
Confidence 356789999999999997754
No 426
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=69.42 E-value=1.7 Score=36.18 Aligned_cols=18 Identities=17% Similarity=0.132 Sum_probs=15.2
Q ss_pred CcEEEecCCCCCccchhh
Q psy496 70 SPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~ 87 (319)
..+.|+|++|||||+..-
T Consensus 4 ~~i~i~G~~gsGkst~~~ 21 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAK 21 (219)
T ss_dssp CCEEEECCTTSSHHHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 468899999999998753
No 427
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=69.39 E-value=2.7 Score=36.87 Aligned_cols=19 Identities=16% Similarity=0.211 Sum_probs=15.5
Q ss_pred CCcEEEecCCCCCccchhh
Q psy496 69 LSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~ 87 (319)
...+++.||+|+|||..+.
T Consensus 104 ~n~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAE 122 (267)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3459999999999996653
No 428
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=69.32 E-value=1.6 Score=40.84 Aligned_cols=19 Identities=21% Similarity=0.242 Sum_probs=15.7
Q ss_pred CCcEEEecCCCCCccchhh
Q psy496 69 LSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~ 87 (319)
...++++|++|||||+..-
T Consensus 258 ~~lIil~G~pGSGKSTla~ 276 (416)
T 3zvl_A 258 PEVVVAVGFPGAGKSTFIQ 276 (416)
T ss_dssp CCEEEEESCTTSSHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHH
Confidence 4568889999999998753
No 429
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=69.12 E-value=1.8 Score=35.59 Aligned_cols=22 Identities=14% Similarity=0.034 Sum_probs=17.5
Q ss_pred CCCcEEEecCCCCCccchhhHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQF 89 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~ 89 (319)
.+.-++++|+.|+|||+.....
T Consensus 15 ~G~gvli~G~SGaGKStlal~L 36 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLAL 36 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHH
Confidence 4566999999999999776443
No 430
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=68.54 E-value=2.9 Score=46.81 Aligned_cols=29 Identities=31% Similarity=0.303 Sum_probs=23.3
Q ss_pred CCCCCcEEEecCCCCCccchhhHHHHHHH
Q psy496 66 SPILSPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 66 ~~~~~~vli~apTGSGKT~~~~l~il~~l 94 (319)
.+.+.+++++||+|+|||......+.+..
T Consensus 1424 i~~g~~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A 1424 LPMGRIVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 55788999999999999988766655543
No 431
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=68.38 E-value=1.6 Score=33.78 Aligned_cols=16 Identities=19% Similarity=0.312 Sum_probs=13.5
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.+++.|++|+|||+..
T Consensus 3 ki~v~G~~~~GKSsli 18 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLF 18 (161)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5789999999999653
No 432
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=68.31 E-value=1.5 Score=42.06 Aligned_cols=17 Identities=24% Similarity=0.364 Sum_probs=14.6
Q ss_pred CcEEEecCCCCCccchh
Q psy496 70 SPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~ 86 (319)
..++|.||+|||||+.+
T Consensus 65 ~GvLL~GppGtGKTtLa 81 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLA 81 (499)
T ss_dssp SEEEEECSSSSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 44999999999999665
No 433
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=67.68 E-value=1.7 Score=44.47 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=22.5
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l 94 (319)
....+|.++|+|++|||||++.-+. ++.+
T Consensus 165 ~~~~nQsIiiSGESGAGKTe~tK~i-~~yl 193 (837)
T 1kk8_A 165 TDRENQSCLITGESGAGKTENTKKV-IMYL 193 (837)
T ss_dssp HHTSEEEEEEECSTTSSHHHHHHHH-HHHH
T ss_pred hcCCCcEEEEeCCCCCCchhhHHHH-HHHH
Confidence 3467899999999999999886553 3444
No 434
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=67.40 E-value=1.6 Score=33.64 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=13.7
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.+++.|++|+|||+.+
T Consensus 5 ~i~v~G~~~~GKssl~ 20 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT 20 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999664
No 435
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=67.08 E-value=1.8 Score=33.72 Aligned_cols=16 Identities=13% Similarity=0.360 Sum_probs=13.7
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.+++.|++|+|||+.+
T Consensus 7 ~i~v~G~~~~GKssl~ 22 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMI 22 (168)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 5889999999999754
No 436
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=66.96 E-value=2.1 Score=35.18 Aligned_cols=17 Identities=12% Similarity=0.255 Sum_probs=14.3
Q ss_pred EEEecCCCCCccchhhH
Q psy496 72 SIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 72 vli~apTGSGKT~~~~l 88 (319)
++|.|++|||||+....
T Consensus 2 ilV~Gg~~SGKS~~A~~ 18 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEA 18 (180)
T ss_dssp EEEEECTTSSHHHHHHH
T ss_pred EEEECCCCCcHHHHHHH
Confidence 68999999999976654
No 437
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=66.73 E-value=1 Score=41.31 Aligned_cols=23 Identities=26% Similarity=0.069 Sum_probs=19.2
Q ss_pred hcCCCCCcEEEecCCCCCccchh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~ 86 (319)
...+.++.+.|.||+|||||+..
T Consensus 26 l~i~~Ge~~~llGpnGsGKSTLL 48 (353)
T 1oxx_K 26 INIENGERFGILGPSGAGKTTFM 48 (353)
T ss_dssp EEECTTCEEEEECSCHHHHHHHH
T ss_pred EEECCCCEEEEECCCCCcHHHHH
Confidence 34567889999999999999765
No 438
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=66.72 E-value=1.8 Score=34.89 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=14.4
Q ss_pred CcEEEecCCCCCccchh
Q psy496 70 SPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~ 86 (319)
-.+++.|++|+|||+.+
T Consensus 49 ~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999654
No 439
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=66.13 E-value=2 Score=44.82 Aligned_cols=26 Identities=19% Similarity=0.187 Sum_probs=21.3
Q ss_pred hcCCCCCcEEEecCCCCCccchhhHH
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQVPQF 89 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~~l~ 89 (319)
.....+|.++|+|++|||||++.-+.
T Consensus 167 ~~~~~~QsIiisGESGAGKTe~~K~i 192 (1010)
T 1g8x_A 167 LDDRQNQSLLITGESGAGKTENTKKV 192 (1010)
T ss_dssp HHHTCCEEEEEEESTTSSHHHHHHHH
T ss_pred HhcCCCeEEEEeCCCCCCcchHHHHH
Confidence 33567899999999999999886553
No 440
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=65.77 E-value=2.1 Score=44.66 Aligned_cols=30 Identities=13% Similarity=0.095 Sum_probs=22.9
Q ss_pred hcCCCCCcEEEecCCCCCccchhhHHHHHHH
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~~l~il~~l 94 (319)
.....+|.+||+|++|||||++.-+. ++.+
T Consensus 141 ~~~~~~QsIiisGESGAGKTe~~K~i-~~yl 170 (995)
T 2ycu_A 141 LQDREDQSILCTGESGAGKTENTKKV-IQYL 170 (995)
T ss_dssp HHHCCCEEEEEECBTTSSHHHHHHHH-HHHH
T ss_pred HhcCCCcEEEecCCCCCCchhhHHHH-HHHH
Confidence 34567899999999999999886553 3444
No 441
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=65.69 E-value=1.8 Score=43.58 Aligned_cols=17 Identities=29% Similarity=0.325 Sum_probs=14.9
Q ss_pred cEEEecCCCCCccchhh
Q psy496 71 PSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 71 ~vli~apTGSGKT~~~~ 87 (319)
+++++||||+|||..+-
T Consensus 490 ~~ll~G~~GtGKT~la~ 506 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTV 506 (758)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 69999999999997653
No 442
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=65.67 E-value=1.9 Score=33.47 Aligned_cols=16 Identities=19% Similarity=0.370 Sum_probs=13.7
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
++++.|++|+|||+.+
T Consensus 5 ~i~v~G~~~~GKssli 20 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIV 20 (170)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999654
No 443
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=65.67 E-value=1.9 Score=33.56 Aligned_cols=16 Identities=25% Similarity=0.441 Sum_probs=13.7
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
++++.|++|+|||+.+
T Consensus 8 ~i~v~G~~~~GKSsli 23 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIM 23 (170)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 5899999999999654
No 444
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=65.67 E-value=2 Score=35.04 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=13.6
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.+++.|++|+|||+.+
T Consensus 7 kv~lvG~~g~GKSTLl 22 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLL 22 (199)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4789999999999654
No 445
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=65.62 E-value=1.9 Score=34.00 Aligned_cols=17 Identities=35% Similarity=0.503 Sum_probs=14.2
Q ss_pred CcEEEecCCCCCccchh
Q psy496 70 SPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~ 86 (319)
-.+++.|++|+|||+.+
T Consensus 9 ~~i~v~G~~~~GKSsli 25 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLM 25 (182)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35899999999999654
No 446
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=65.46 E-value=3.4 Score=46.28 Aligned_cols=37 Identities=27% Similarity=0.208 Sum_probs=29.1
Q ss_pred HHhh--hcCCCCCcEEEecCCCCCccchhhHHHHHHHHH
Q psy496 60 NKCL--TLSPILSPSIIYTSTGCGKTTQVPQFILDDEIA 96 (319)
Q Consensus 60 ~~~l--~~~~~~~~vli~apTGSGKT~~~~l~il~~l~~ 96 (319)
++++ .-.+.+++++++||+|||||+.....+.+.+..
T Consensus 1070 d~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ea~k~ 1108 (2050)
T 3cmu_A 1070 DIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE 1108 (2050)
T ss_dssp HHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred HHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4555 357789999999999999998887777666543
No 447
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=65.28 E-value=2 Score=35.49 Aligned_cols=17 Identities=29% Similarity=0.366 Sum_probs=14.5
Q ss_pred CcEEEecCCCCCccchh
Q psy496 70 SPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~ 86 (319)
-.+++.|++|+|||+.+
T Consensus 13 ~~i~~~G~~g~GKTsl~ 29 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLL 29 (218)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46899999999999654
No 448
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=65.14 E-value=3.7 Score=45.17 Aligned_cols=40 Identities=23% Similarity=0.146 Sum_probs=29.5
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHHHHhCCCCccEEEEec
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQ 109 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l~~~~~~~~~~vl~~~ 109 (319)
-.+.+++++|+||+|||||......+.+.+.... .++|+.
T Consensus 30 Gi~~G~i~lI~G~pGsGKT~LAlqla~~~~~~G~-----~vlYI~ 69 (1706)
T 3cmw_A 30 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK-----TCAFID 69 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC-----CEEEEC
T ss_pred CcCCCeEEEEECCCCCCHHHHHHHHHHHHhhCCC-----ceEEEE
Confidence 4667889999999999999887777666554322 466653
No 449
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=64.97 E-value=2.2 Score=39.85 Aligned_cols=20 Identities=20% Similarity=0.227 Sum_probs=16.6
Q ss_pred CCCcEEEecCCCCCccchhh
Q psy496 68 ILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~ 87 (319)
.++.++|.||+|||||+.+-
T Consensus 25 ~~~~~~i~G~nG~GKstll~ 44 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMD 44 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHH
Confidence 35778999999999997654
No 450
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=64.96 E-value=2.3 Score=44.78 Aligned_cols=30 Identities=17% Similarity=0.081 Sum_probs=23.0
Q ss_pred cCCCCCcEEEecCCCCCccchhhHHHHHHHH
Q psy496 65 LSPILSPSIIYTSTGCGKTTQVPQFILDDEI 95 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~~l~il~~l~ 95 (319)
....||.++|+|++|||||++.-+. ++.+.
T Consensus 152 ~~~~~QsIiisGESGAGKTe~~K~i-~~yla 181 (1080)
T 2dfs_A 152 RDERNQSIIVSGESGAGKTVSAKYA-MRYFA 181 (1080)
T ss_dssp HHTCCEEEEEECSTTSSHHHHHHHH-HHHHH
T ss_pred hcCCCcEEEEcCCCCCCccchHHHH-HHHHH
Confidence 3457899999999999999886553 44443
No 451
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=64.85 E-value=1.6 Score=39.90 Aligned_cols=19 Identities=21% Similarity=0.232 Sum_probs=16.5
Q ss_pred CCcEEEecCCCCCccchhh
Q psy496 69 LSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~ 87 (319)
++.+.|.||+|||||+.+-
T Consensus 170 g~k~~IvG~nGsGKSTLlk 188 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVN 188 (365)
T ss_dssp CEEEEEECCTTSHHHHHHH
T ss_pred hCeEEEECCCCCCHHHHHH
Confidence 6789999999999998653
No 452
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=64.81 E-value=2.1 Score=33.17 Aligned_cols=17 Identities=29% Similarity=0.403 Sum_probs=14.2
Q ss_pred CcEEEecCCCCCccchh
Q psy496 70 SPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~ 86 (319)
-++++.|++|+|||+.+
T Consensus 5 ~~i~v~G~~~~GKssl~ 21 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALT 21 (168)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 35899999999999653
No 453
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=64.55 E-value=2 Score=34.86 Aligned_cols=16 Identities=19% Similarity=0.482 Sum_probs=13.8
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.++|.|+.|+|||+.+
T Consensus 31 kv~lvG~~g~GKSTLl 46 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLL 46 (191)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4789999999999764
No 454
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=64.26 E-value=2.2 Score=36.85 Aligned_cols=19 Identities=26% Similarity=0.246 Sum_probs=15.8
Q ss_pred CCcEEEecCCCCCccchhh
Q psy496 69 LSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~ 87 (319)
...+++.|+.|||||+..-
T Consensus 24 ~~~I~ieG~~GsGKST~~~ 42 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVN 42 (263)
T ss_dssp CEEEEEECSTTSSHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHH
Confidence 4568899999999998763
No 455
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=64.26 E-value=2.1 Score=49.30 Aligned_cols=19 Identities=26% Similarity=0.288 Sum_probs=16.5
Q ss_pred CCCcEEEecCCCCCccchh
Q psy496 68 ILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~ 86 (319)
.++.++++||||||||..+
T Consensus 1266 ~~~~vLL~GPpGtGKT~la 1284 (2695)
T 4akg_A 1266 SKRGIILCGPPGSGKTMIM 1284 (2695)
T ss_dssp HTCEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999765
No 456
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=64.25 E-value=2.1 Score=33.05 Aligned_cols=16 Identities=25% Similarity=0.449 Sum_probs=13.8
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.+++.|++|+|||+.+
T Consensus 5 ~i~v~G~~~~GKSsli 20 (167)
T 1kao_A 5 KVVVLGSGGVGKSALT 20 (167)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999653
No 457
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=64.23 E-value=2 Score=33.40 Aligned_cols=16 Identities=19% Similarity=0.439 Sum_probs=13.6
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.+++.|++|+|||+.+
T Consensus 5 ~i~v~G~~~~GKssli 20 (170)
T 1g16_A 5 KILLIGDSGVGKSCLL 20 (170)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 4889999999999653
No 458
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=64.18 E-value=1.8 Score=39.63 Aligned_cols=21 Identities=29% Similarity=0.126 Sum_probs=17.1
Q ss_pred CCCcEEE--ecCCCCCccchhhH
Q psy496 68 ILSPSII--YTSTGCGKTTQVPQ 88 (319)
Q Consensus 68 ~~~~vli--~apTGSGKT~~~~l 88 (319)
....++| +||+|+|||+..-.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~ 71 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKF 71 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHH
Confidence 4567999 99999999987644
No 459
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=64.02 E-value=2 Score=34.60 Aligned_cols=17 Identities=12% Similarity=0.233 Sum_probs=14.5
Q ss_pred CcEEEecCCCCCccchh
Q psy496 70 SPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~ 86 (319)
-.+++.|++|+|||+.+
T Consensus 24 ~~i~v~G~~~~GKSsli 40 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFI 40 (195)
T ss_dssp CEEEEEEBTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 46999999999999654
No 460
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=63.96 E-value=2.5 Score=36.07 Aligned_cols=26 Identities=27% Similarity=0.151 Sum_probs=16.7
Q ss_pred CCCcEEEecCCCCCccchhhHHHHHHH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l~il~~l 94 (319)
.+..+++.|+.|||||+..-.. .+.+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l-~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWF-CDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHH-HHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHH-HHHH
Confidence 4667899999999999887553 3444
No 461
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=63.70 E-value=4.8 Score=46.42 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=17.9
Q ss_pred CCCCcEEEecCCCCCccchhhH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l 88 (319)
..+..++|.||||||||+++-.
T Consensus 921 ~~r~gvmlvGptgsGKTt~~~~ 942 (2695)
T 4akg_A 921 KTQQALILVGKAGCGKTATWKT 942 (2695)
T ss_dssp HHCSEEEEECSTTSSHHHHHHH
T ss_pred HhcceEEEECCCCCCHHHHHHH
Confidence 3456799999999999988743
No 462
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=63.69 E-value=2.6 Score=39.72 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=21.9
Q ss_pred HHhhhcCCCCCcEEEecCCCCCccchh
Q psy496 60 NKCLTLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 60 ~~~l~~~~~~~~vli~apTGSGKT~~~ 86 (319)
+++ .....++.+.|.||.|||||+..
T Consensus 149 d~v-l~i~~Gq~~~IvG~sGsGKSTLl 174 (438)
T 2dpy_A 149 NAL-LTVGRGQRMGLFAGSGVGKSVLL 174 (438)
T ss_dssp HHH-SCCBTTCEEEEEECTTSSHHHHH
T ss_pred eee-EEecCCCEEEEECCCCCCHHHHH
Confidence 345 66778999999999999999873
No 463
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=63.53 E-value=2.3 Score=35.81 Aligned_cols=20 Identities=20% Similarity=0.079 Sum_probs=16.7
Q ss_pred CCcEEEecCCCCCccchhhH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l 88 (319)
+..+++.|+.|||||+..-.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~ 25 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDY 25 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHH
Confidence 45688899999999988754
No 464
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=63.31 E-value=2.3 Score=33.14 Aligned_cols=16 Identities=25% Similarity=0.534 Sum_probs=13.7
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.+++.|++|+|||+.+
T Consensus 5 ~i~v~G~~~~GKssli 20 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLV 20 (172)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999653
No 465
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=63.22 E-value=2.3 Score=32.97 Aligned_cols=16 Identities=25% Similarity=0.426 Sum_probs=13.6
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.+++.|++|+|||+.+
T Consensus 5 ki~v~G~~~~GKssli 20 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALT 20 (167)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999653
No 466
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=63.20 E-value=2.2 Score=36.21 Aligned_cols=18 Identities=28% Similarity=0.187 Sum_probs=15.0
Q ss_pred CcEEEecCCCCCccchhh
Q psy496 70 SPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~ 87 (319)
..+++.|+.|||||+..-
T Consensus 3 ~~i~~~G~~g~GKtt~~~ 20 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVK 20 (241)
T ss_dssp EEEEEEECTTSSHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHH
Confidence 457899999999998753
No 467
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=63.03 E-value=2.3 Score=33.46 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=13.7
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.+++.|++|+|||+.+
T Consensus 9 ~i~v~G~~~~GKSsli 24 (177)
T 1wms_A 9 KVILLGDGGVGKSSLM 24 (177)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999653
No 468
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=62.66 E-value=2.8 Score=40.61 Aligned_cols=22 Identities=27% Similarity=0.157 Sum_probs=19.0
Q ss_pred cCCCCCcEEEecCCCCCccchh
Q psy496 65 LSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~ 86 (319)
....++.+.|.||+|||||+.+
T Consensus 43 ~i~~Ge~~~LvG~NGaGKSTLl 64 (538)
T 1yqt_A 43 VVKEGMVVGIVGPNGTGKSTAV 64 (538)
T ss_dssp CCCTTSEEEEECCTTSSHHHHH
T ss_pred cCCCCCEEEEECCCCCCHHHHH
Confidence 3568889999999999999765
No 469
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=62.34 E-value=2.3 Score=37.70 Aligned_cols=19 Identities=11% Similarity=0.209 Sum_probs=16.1
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
..++|+||.|+|||+..-.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~ 49 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKI 49 (357)
T ss_dssp SEEEEEESTTSSHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHH
Confidence 5899999999999976543
No 470
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=62.33 E-value=2.2 Score=34.11 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=14.2
Q ss_pred CcEEEecCCCCCccchh
Q psy496 70 SPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~ 86 (319)
-.+++.|++|+|||+.+
T Consensus 24 ~~i~v~G~~~~GKSsli 40 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLL 40 (195)
T ss_dssp CEEEEEEBTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35899999999999654
No 471
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=62.06 E-value=2.6 Score=33.16 Aligned_cols=16 Identities=19% Similarity=0.237 Sum_probs=13.7
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.+++.|++|+|||+.+
T Consensus 5 ~v~lvG~~gvGKStL~ 20 (165)
T 2wji_A 5 EIALIGNPNVGKSTIF 20 (165)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999654
No 472
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=61.85 E-value=2.6 Score=41.81 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=19.9
Q ss_pred hcCCCCCcEEEecCCCCCccchhh
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~~ 87 (319)
...+.++.+.|.||+|||||+.+-
T Consensus 343 l~I~~Ge~vaIiGpnGsGKSTLl~ 366 (670)
T 3ux8_A 343 VKIPLGTFVAVTGVSGSGKSTLVN 366 (670)
T ss_dssp EEEETTSEEEEECSTTSSHHHHHT
T ss_pred eEecCCCEEEEEeeCCCCHHHHHH
Confidence 345678899999999999998863
No 473
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=61.73 E-value=2.5 Score=32.76 Aligned_cols=16 Identities=19% Similarity=0.395 Sum_probs=13.7
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.+++.|++|+|||+.+
T Consensus 8 ~i~v~G~~~~GKssli 23 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLV 23 (170)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999654
No 474
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=61.62 E-value=2.3 Score=43.57 Aligned_cols=22 Identities=23% Similarity=0.315 Sum_probs=17.3
Q ss_pred CCCCcEEEecCCCCCccchhhH
Q psy496 67 PILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 67 ~~~~~vli~apTGSGKT~~~~l 88 (319)
....+++++||+|+|||+.+-.
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~ 210 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEG 210 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHH
T ss_pred CCCCceEEEcCCCCCHHHHHHH
Confidence 3456799999999999976543
No 475
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=61.60 E-value=2.5 Score=33.26 Aligned_cols=16 Identities=25% Similarity=0.499 Sum_probs=13.7
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.+++.|++|+|||+.+
T Consensus 11 ~i~v~G~~~~GKssl~ 26 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLL 26 (181)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999653
No 476
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=61.50 E-value=2.5 Score=32.90 Aligned_cols=16 Identities=25% Similarity=0.333 Sum_probs=13.8
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.+++.|++|+|||+.+
T Consensus 8 ~i~v~G~~~~GKssli 23 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLV 23 (170)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 5889999999999654
No 477
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=61.46 E-value=2.5 Score=35.71 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=14.4
Q ss_pred CcEEEecCCCCCccchh
Q psy496 70 SPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~ 86 (319)
-.++|.|++|+|||+.+
T Consensus 30 ~~i~lvG~~g~GKStli 46 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATG 46 (239)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36899999999999654
No 478
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=61.29 E-value=3 Score=34.50 Aligned_cols=19 Identities=26% Similarity=0.333 Sum_probs=15.6
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
..+++.|++|+|||+.+-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~ 49 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIER 49 (221)
T ss_dssp EEEEEEECTTSCHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHH
Confidence 4688999999999976543
No 479
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=61.17 E-value=2.6 Score=32.81 Aligned_cols=16 Identities=25% Similarity=0.461 Sum_probs=13.5
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.+++.|++|+|||+.+
T Consensus 4 ki~ivG~~~~GKSsli 19 (169)
T 3q85_A 4 KVMLVGESGVGKSTLA 19 (169)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999654
No 480
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=60.91 E-value=3.5 Score=37.72 Aligned_cols=27 Identities=26% Similarity=0.220 Sum_probs=18.3
Q ss_pred HHhhhcCCCCCc--EEEecCCCCCccchh
Q psy496 60 NKCLTLSPILSP--SIIYTSTGCGKTTQV 86 (319)
Q Consensus 60 ~~~l~~~~~~~~--vli~apTGSGKT~~~ 86 (319)
..++..+-++.| ++..|.||||||...
T Consensus 95 ~plv~~~l~G~n~tifAYGqTGSGKTyTm 123 (355)
T 3lre_A 95 KPILRSFLNGYNCTVLAYGATGAGKTHTM 123 (355)
T ss_dssp HHHHHHHTTTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHHHHhCCCceEEEEeCCCCCCceeee
Confidence 345544444444 666999999999664
No 481
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=60.90 E-value=2.6 Score=38.43 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=21.6
Q ss_pred HHhhhcCCCCCcEEEecCCCCCccchh
Q psy496 60 NKCLTLSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 60 ~~~l~~~~~~~~vli~apTGSGKT~~~ 86 (319)
+++ .....++.+.|.||.|+|||+..
T Consensus 63 d~l-l~i~~Gq~~gIiG~nGaGKTTLl 88 (347)
T 2obl_A 63 DGL-LTCGIGQRIGIFAGSGVGKSTLL 88 (347)
T ss_dssp HHH-SCEETTCEEEEEECTTSSHHHHH
T ss_pred Eee-eeecCCCEEEEECCCCCCHHHHH
Confidence 344 66678999999999999999873
No 482
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=60.80 E-value=2.9 Score=35.90 Aligned_cols=21 Identities=24% Similarity=0.219 Sum_probs=17.0
Q ss_pred CCCcEEEecCCCCCccchhhH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l 88 (319)
.+..+++.|+.|||||+..-.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~ 46 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQV 46 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 345688999999999987654
No 483
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=60.80 E-value=2.7 Score=33.55 Aligned_cols=17 Identities=18% Similarity=0.186 Sum_probs=14.3
Q ss_pred CcEEEecCCCCCccchh
Q psy496 70 SPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~ 86 (319)
-.+++.|++|+|||+.+
T Consensus 8 ~~i~lvG~~gvGKStL~ 24 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIF 24 (188)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 35889999999999654
No 484
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=60.79 E-value=2.7 Score=37.22 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=16.1
Q ss_pred CcEEEecCCCCCccchhhH
Q psy496 70 SPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~~l 88 (319)
+.++|+||.|+|||+..-.
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~ 50 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRA 50 (350)
T ss_dssp SEEEEECCTTSSHHHHHHH
T ss_pred CeEEEECCCcCCHHHHHHH
Confidence 6899999999999976543
No 485
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=60.55 E-value=2.6 Score=32.73 Aligned_cols=16 Identities=19% Similarity=0.441 Sum_probs=13.6
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.+++.|++|+|||+.+
T Consensus 4 ki~~vG~~~~GKSsli 19 (166)
T 3q72_A 4 KVLLLGAPGVGKSALA 19 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999654
No 486
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=60.44 E-value=2.9 Score=35.35 Aligned_cols=21 Identities=29% Similarity=0.055 Sum_probs=17.4
Q ss_pred CCCcEEEecCCCCCccchhhH
Q psy496 68 ILSPSIIYTSTGCGKTTQVPQ 88 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~~l 88 (319)
.+..+++.|+.|||||+..-.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~ 24 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNI 24 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHH
Confidence 456788999999999988754
No 487
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=60.44 E-value=2.9 Score=44.53 Aligned_cols=30 Identities=13% Similarity=0.095 Sum_probs=22.8
Q ss_pred hcCCCCCcEEEecCCCCCccchhhHHHHHHH
Q psy496 64 TLSPILSPSIIYTSTGCGKTTQVPQFILDDE 94 (319)
Q Consensus 64 ~~~~~~~~vli~apTGSGKT~~~~l~il~~l 94 (319)
.....+|.+||+|++|||||...-+. ++.+
T Consensus 164 ~~~~~~Q~i~isGeSGaGKTe~~k~~-~~yl 193 (1184)
T 1i84_S 164 LQDREDQSILCTGESGAGKTENTKKV-IQYL 193 (1184)
T ss_dssp HHHTCCEEEECCCSTTSSTTHHHHHH-HHHH
T ss_pred HhcCCCcEEEEecCCCCCccHHHHHH-HHHH
Confidence 33567899999999999999886553 3444
No 488
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=60.34 E-value=2.9 Score=35.16 Aligned_cols=27 Identities=22% Similarity=0.131 Sum_probs=19.3
Q ss_pred CCcEEEecCCCCCccchhhHHHHHHHHH
Q psy496 69 LSPSIIYTSTGCGKTTQVPQFILDDEIA 96 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~~l~il~~l~~ 96 (319)
+..+++.|+.|||||+..-.. .+.+..
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l-~~~l~~ 29 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVV-VETLEQ 29 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHH-HHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHH-HHHHHH
Confidence 456888999999999887543 344433
No 489
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=60.27 E-value=3.2 Score=32.64 Aligned_cols=19 Identities=26% Similarity=0.153 Sum_probs=15.4
Q ss_pred CCCcEEEecCCCCCccchh
Q psy496 68 ILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 68 ~~~~vli~apTGSGKT~~~ 86 (319)
+.-.+++.|++|+|||+.+
T Consensus 7 ~~~~i~v~G~~~~GKssl~ 25 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLL 25 (178)
T ss_dssp CCCEEEEESCTTTTHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3456899999999999654
No 490
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=60.26 E-value=2.8 Score=33.58 Aligned_cols=16 Identities=44% Similarity=0.557 Sum_probs=13.7
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.++|.|++|+|||+.+
T Consensus 4 kv~ivG~~gvGKStLl 19 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLL 19 (184)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4889999999999654
No 491
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=60.07 E-value=2.7 Score=33.10 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=14.2
Q ss_pred CcEEEecCCCCCccchh
Q psy496 70 SPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~ 86 (319)
-.+++.|++|+|||+.+
T Consensus 10 ~~i~v~G~~~~GKssli 26 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALT 26 (181)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35899999999999654
No 492
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=60.06 E-value=2.8 Score=32.81 Aligned_cols=16 Identities=25% Similarity=0.468 Sum_probs=13.8
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.+++.|++|+|||+.+
T Consensus 6 ki~i~G~~~vGKSsl~ 21 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLA 21 (175)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCccHHHHH
Confidence 5899999999999654
No 493
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=59.86 E-value=2.7 Score=33.48 Aligned_cols=18 Identities=17% Similarity=0.191 Sum_probs=14.8
Q ss_pred CCcEEEecCCCCCccchh
Q psy496 69 LSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 69 ~~~vli~apTGSGKT~~~ 86 (319)
+..+++.|++|+|||+.+
T Consensus 4 ~~ki~ivG~~g~GKStLl 21 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLL 21 (172)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346899999999999654
No 494
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=59.83 E-value=2.9 Score=32.60 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=14.3
Q ss_pred CcEEEecCCCCCccchh
Q psy496 70 SPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 70 ~~vli~apTGSGKT~~~ 86 (319)
-.+++.|++|+|||+.+
T Consensus 8 ~~i~v~G~~~~GKssl~ 24 (171)
T 1upt_A 8 MRILILGLDGAGKTTIL 24 (171)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46899999999999653
No 495
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=59.83 E-value=2.7 Score=32.97 Aligned_cols=16 Identities=19% Similarity=0.339 Sum_probs=13.8
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.+++.|++|+|||+.+
T Consensus 16 ~i~v~G~~~~GKssli 31 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLI 31 (179)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5889999999999654
No 496
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=59.81 E-value=3 Score=44.88 Aligned_cols=27 Identities=22% Similarity=0.257 Sum_probs=21.5
Q ss_pred HhhhcCCCCCcEEEecCCCCCccchhh
Q psy496 61 KCLTLSPILSPSIIYTSTGCGKTTQVP 87 (319)
Q Consensus 61 ~~l~~~~~~~~vli~apTGSGKT~~~~ 87 (319)
++=...+.++.+.|+||+|||||+..-
T Consensus 436 ~isl~i~~G~~vaivG~sGsGKSTll~ 462 (1321)
T 4f4c_A 436 GMNLRVNAGQTVALVGSSGCGKSTIIS 462 (1321)
T ss_dssp EEEEEECTTCEEEEEECSSSCHHHHHH
T ss_pred ceEEeecCCcEEEEEecCCCcHHHHHH
Confidence 333456788999999999999998763
No 497
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=59.81 E-value=2.9 Score=32.83 Aligned_cols=16 Identities=31% Similarity=0.443 Sum_probs=13.9
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.+++.|++|+|||+.+
T Consensus 17 ~i~v~G~~~~GKSsli 32 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLL 32 (179)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999654
No 498
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=59.77 E-value=2.9 Score=33.50 Aligned_cols=16 Identities=19% Similarity=0.380 Sum_probs=13.8
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.+++.|++|+|||+.+
T Consensus 23 ki~vvG~~~~GKSsli 38 (190)
T 3con_A 23 KLVVVGAGGVGKSALT 38 (190)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 5899999999999654
No 499
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=59.77 E-value=3 Score=41.01 Aligned_cols=22 Identities=18% Similarity=0.101 Sum_probs=18.8
Q ss_pred cCCCCCcEEEecCCCCCccchh
Q psy496 65 LSPILSPSIIYTSTGCGKTTQV 86 (319)
Q Consensus 65 ~~~~~~~vli~apTGSGKT~~~ 86 (319)
....++.+.|.||.|||||+.+
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLL 120 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTAL 120 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCChHHHHH
Confidence 3457889999999999999875
No 500
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=59.65 E-value=2.9 Score=33.29 Aligned_cols=16 Identities=25% Similarity=0.422 Sum_probs=13.9
Q ss_pred cEEEecCCCCCccchh
Q psy496 71 PSIIYTSTGCGKTTQV 86 (319)
Q Consensus 71 ~vli~apTGSGKT~~~ 86 (319)
.+++.|++|+|||+.+
T Consensus 13 ki~v~G~~~~GKSsli 28 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVL 28 (195)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5899999999999654
Done!