RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy496
(319 letters)
>gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination,
and repair].
Length = 845
Score = 205 bits (524), Expect = 4e-60
Identities = 88/175 (50%), Positives = 119/175 (68%), Gaps = 11/175 (6%)
Query: 78 TGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSV 137
TG GKTTQ+PQF+L++ G I TQPRR++A ++AERVA+E E + G +V
Sbjct: 74 TGSGKTTQLPQFLLEEG----LGIAGKIGCTQPRRLAARSVAERVAEELGE---KLGETV 126
Query: 138 GYQIRLE-KELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAI 196
GY IR E K PR R I T GIL +Q+DP+LSG S +++DE HERS+ +D LL +
Sbjct: 127 GYSIRFESKVSPRTR--IKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGL 184
Query: 197 LKDVTDKRK-DLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLN 250
LKD+ +R+ DLKLI+MSATL+AE+FS +FG AP++ I G TYPV+ YL +
Sbjct: 185 LKDLLARRRDDLKLIIMSATLDAERFSAYFGNAPVIEIEGRTYPVEIRYLPEAEA 239
Score = 53.5 bits (129), Expect = 8e-08
Identities = 18/40 (45%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 19 GCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAL 58
G GKTTQ+PQF+L++ G I TQPRR++A ++
Sbjct: 75 GSGKTTQLPQFLLEEG----LGIAGKIGCTQPRRLAARSV 110
>gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA. This model
represents HrpA, one of two related but uncharacterized
DEAH-box ATP-dependent helicases in many Proteobacteria
and a few high-GC Gram-positive bacteria. HrpA is about
1300 amino acids long, while its paralog HrpB, also
uncharacterized, is about 800 amino acids long. Related
characterized eukarotic proteins are RNA helicases
associated with pre-mRNA processing [Unknown function,
Enzymes of unknown specificity].
Length = 1283
Score = 145 bits (368), Expect = 9e-39
Identities = 72/172 (41%), Positives = 100/172 (58%), Gaps = 8/172 (4%)
Query: 73 IIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGR 132
II TG GKTTQ+P+ L+ RGS I TQPRR++A +A+R+A+E
Sbjct: 86 IIAGETGSGKTTQLPKICLE----LGRGSHGLIGHTQPRRLAARTVAQRIAEELGTP--- 138
Query: 133 PGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDF 192
G VGY++R ++ + T GIL Q D LS I++DE HERS+ DF
Sbjct: 139 LGEKVGYKVRFHDQV-SSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLNIDF 197
Query: 193 LLAILKDVTDKRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYY 244
LL LK + +R DLK+I+ SAT++ E+FS+ F API+ + G TYPV+ Y
Sbjct: 198 LLGYLKQLLPRRPDLKIIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRY 249
Score = 37.8 bits (88), Expect = 0.007
Identities = 18/37 (48%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 19 GCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISA 55
G GKTTQ+P+ L+ RGS I TQPRR++A
Sbjct: 92 GSGKTTQLPKICLE----LGRGSHGLIGHTQPRRLAA 124
>gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB. This model
represents HrpB, one of two related but uncharacterized
DEAH-box ATP-dependent helicases in many Proteobacteria,
but also in a few species of other lineages. The member
from Rhizobium meliloti has been designated HelO. HrpB
is typically about 800 residues in length, while its
paralog HrpA (TIGR01967), also uncharacterized, is about
1300 amino acids long. Related characterized eukarotic
proteins are RNA helicases associated with pre-mRNA
processing [Unknown function, Enzymes of unknown
specificity].
Length = 819
Score = 133 bits (337), Expect = 8e-35
Identities = 65/170 (38%), Positives = 99/170 (58%), Gaps = 12/170 (7%)
Query: 78 TGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSV 137
G GK+T VP +LD + I++ +PRR++A + A+R+A + E G +V
Sbjct: 26 PGAGKSTAVPLALLDAPGIGGK-----IIMLEPRRLAARSAAQRLASQLGEA---VGQTV 77
Query: 138 GYQIRLE-KELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAI 196
GY++R E K R R ++ T GIL ++Q DP L GV ++ DE HERS+ +D LA+
Sbjct: 78 GYRVRGENKVSRRTRLEVV--TEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGLAL 135
Query: 197 LKDVTDK-RKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYYL 245
DV R+DLK++ MSATL+ E+ S AP++ G ++PV+ YL
Sbjct: 136 ALDVQSSLREDLKILAMSATLDGERLSSLLPDAPVVESEGRSFPVEIRYL 185
>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional.
Length = 1294
Score = 132 bits (335), Expect = 2e-34
Identities = 72/191 (37%), Positives = 111/191 (58%), Gaps = 11/191 (5%)
Query: 73 IIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGR 132
I+ TG GKTTQ+P+ L+ RG + I TQPRR++A +A R+A+E + +
Sbjct: 93 IVAGETGSGKTTQLPKICLE----LGRGVKGLIGHTQPRRLAARTVANRIAEELETE--- 145
Query: 133 PGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDF 192
G VGY++R ++ + T GIL +Q D +L I++DE HERS+ DF
Sbjct: 146 LGGCVGYKVRFNDQV-SDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLNIDF 204
Query: 193 LLAILKDVTDKRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYY---LEDVL 249
+L LK++ +R DLK+I+ SAT++ E+FS+ F API+ + G TYPV+ Y +E+
Sbjct: 205 ILGYLKELLPRRPDLKVIITSATIDPERFSRHFNNAPIIEVSGRTYPVEVRYRPIVEEAD 264
Query: 250 NMTRKDLKLIL 260
+ R L+ I
Sbjct: 265 DTERDQLQAIF 275
Score = 33.5 bits (77), Expect = 0.16
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Query: 19 GCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISA 55
G GKTTQ+P+ L+ RG + I TQPRR++A
Sbjct: 99 GSGKTTQLPKICLE----LGRGVKGLIGHTQPRRLAA 131
>gnl|CDD|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional.
Length = 812
Score = 115 bits (289), Expect = 2e-28
Identities = 66/174 (37%), Positives = 106/174 (60%), Gaps = 12/174 (6%)
Query: 73 IIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGR 132
++ TG GK+T +P +L + I++ +PRR++A +A+R+A++ E+
Sbjct: 24 LLKAPTGAGKSTWLPLQLLQHGGINGK-----IIMLEPRRLAARNVAQRLAEQLGEK--- 75
Query: 133 PGSSVGYQIRLE-KELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISD 191
PG +VGY++R E K P R ++ T GIL ++Q DP LSGV +++DE HERS+ +D
Sbjct: 76 PGETVGYRMRAESKVGPNTRLEVV--TEGILTRMIQRDPELSGVGLVILDEFHERSLQAD 133
Query: 192 FLLAILKDVTDK-RKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEYY 244
LA+L DV R DLKL++MSATL+ ++ Q AP++ G ++PV+ Y
Sbjct: 134 LALALLLDVQQGLRDDLKLLIMSATLDNDRLQQLLPDAPVIVSEGRSFPVERRY 187
>gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily.
Length = 201
Score = 84.5 bits (209), Expect = 1e-19
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 9/167 (5%)
Query: 78 TGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGS-S 136
TG GKT L+ A RG ++V P R A AE + + +
Sbjct: 33 TGSGKTLAALLPALE---ALKRGKGGRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLY 89
Query: 137 VGYQIR-LEKELPRKRGSILYCTAGILPEVMQSDPI-LSGVSHIVMDEIHERSMISDFLL 194
G R ++L + IL T G L +++++D + LS V +++DE H F
Sbjct: 90 GGDSKREQLRKLESGKTDILVTTPGRLLDLLENDKLSLSNVDLVILDEAHRLL-DGGFGD 148
Query: 195 AILKDVTDKRKDLKLILMSATL--NAEKFSQFFGGAPILHIPGFTYP 239
+ K + K+++L+L+SAT E + F P+ GFT
Sbjct: 149 QLEKLLKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGFTPL 195
>gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily. A diverse family
of proteins involved in ATP-dependent RNA or DNA
unwinding. This domain contains the ATP-binding region.
Length = 144
Score = 80.1 bits (198), Expect = 2e-18
Identities = 38/141 (26%), Positives = 66/141 (46%), Gaps = 7/141 (4%)
Query: 78 TGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSV 137
TG GKT IL+ + G ++V P R A +AER+ + E + G +
Sbjct: 9 TGSGKTLAALLPILELLDSLKGGQ---VLVLAPTRELANQVAERLKELFGEG-IKVGYLI 64
Query: 138 GYQ-IRLEKELPRKRGSILYCTAGILPEVMQSDPI-LSGVSHIVMDEIHERSMISDFLLA 195
G I+ +++L + I+ T G L + ++ + L + +++DE H F L
Sbjct: 65 GGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLL-NQGFGLL 123
Query: 196 ILKDVTDKRKDLKLILMSATL 216
LK + KD +++L+SAT
Sbjct: 124 GLKILLKLPKDRQVLLLSATP 144
Score = 30.8 bits (70), Expect = 0.43
Identities = 11/37 (29%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 19 GCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISA 55
G GKT IL+ + G ++V P R A
Sbjct: 10 GSGKTLAALLPILELLDSLKGGQ---VLVLAPTRELA 43
>gnl|CDD|177443 PHA02653, PHA02653, RNA helicase NPH-II; Provisional.
Length = 675
Score = 51.5 bits (124), Expect = 3e-07
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 5/70 (7%)
Query: 178 IVMDEIHERSMISDFLLAILKDVTDKRKDLKLILMSATL--NAEKFSQFFGGAPILHIPG 235
+++DE+HE I D ++A+ + DK + L LM+ATL + ++ +FF +HIPG
Sbjct: 295 VIIDEVHEHDQIGDIIIAVARKHIDKIRS--LFLMTATLEDDRDRIKEFFPNPAFVHIPG 352
Query: 236 FT-YPVQEYY 244
T +P+ E Y
Sbjct: 353 GTLFPISEVY 362
Score = 35.7 bits (83), Expect = 0.027
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Query: 258 LILMSATL--NAEKFSQFFGGAPILHIPGFT-YPVQEYY 293
L LM+ATL + ++ +FF +HIPG T +P+ E Y
Sbjct: 324 LFLMTATLEDDRDRIKEFFPNPAFVHIPGGTLFPISEVY 362
Score = 29.6 bits (67), Expect = 2.6
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 71 PSIIYTSTGCGKTTQVPQFIL 91
P ++ TG GKT+QVP+ +L
Sbjct: 181 PVVLTGGTGVGKTSQVPKLLL 201
>gnl|CDD|215832 pfam00270, DEAD, DEAD/DEAH box helicase. Members of this family
include the DEAD and DEAH box helicases. Helicases are
involved in unwinding nucleic acids. The DEAD box
helicases are involved in various aspects of RNA
metabolism, including nuclear transcription, pre mRNA
splicing, ribosome biogenesis, nucleocytoplasmic
transport, translation, RNA decay and organellar gene
expression.
Length = 169
Score = 43.8 bits (104), Expect = 2e-05
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 21/168 (12%)
Query: 64 TLSPILSPS--IIYTSTGCGKTT--QVPQFILDDEIARNRGSECCIMVTQPRRISAIAIA 119
+ ILS ++ TG GKT +P IL + + G + ++ P R A I
Sbjct: 7 AIPAILSGKDVLVQAPTGSGKTLAFLLP--ILQALLPKKGGPQALVLA--PTRELAEQIY 62
Query: 120 ERVAQERDEQCGRP-----GSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPI--L 172
E + + R G+S+ Q R K + + IL T G L ++++ + L
Sbjct: 63 EELKKLFKILGLRVALLTGGTSLKEQARKLK---KGKADILVGTPGRLLDLLRRGKLKLL 119
Query: 173 SGVSHIVMDEIHERSMIS-DFLLAILKDVTDKRKDLKLILMSATLNAE 219
+ +V+DE H ++ F + + ++ D +++L+SATL
Sbjct: 120 KNLKLLVLDEAHR--LLDMGFGDDLEEILSRLPPDRQILLLSATLPRN 165
>gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function
prediction only].
Length = 766
Score = 37.4 bits (87), Expect = 0.009
Identities = 21/95 (22%), Positives = 39/95 (41%), Gaps = 15/95 (15%)
Query: 175 VSHIVMDEIHERSMISD-----FLLAILKDVTDKRKDLKLILMSATL-NAEKFSQFFGGA 228
V +V+DEIH ++ D L +I+ + + ++++ +SATL NAE+ + +
Sbjct: 147 VDLVVIDEIH---LLGDRTRGPVLESIVARMRRLNELIRIVGLSATLPNAEEVADWLNAK 203
Query: 229 PILHI----PGFT--YPVQEYYLEDVLNMTRKDLK 257
+ P V + D T L
Sbjct: 204 LVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLI 238
>gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication,
recombination, and repair].
Length = 1041
Score = 33.9 bits (78), Expect = 0.11
Identities = 16/77 (20%), Positives = 35/77 (45%), Gaps = 16/77 (20%)
Query: 153 SILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKDVTDKR--KDLKLI 210
++LY + L ++ +V DE+H I D ++ + ++ +
Sbjct: 218 NMLYRGSESLRDI----------EWVVFDEVH---YIGDRERGVVWEEVIILLPDHVRFV 264
Query: 211 LMSATL-NAEKFSQFFG 226
+SAT+ NAE+F+++
Sbjct: 265 FLSATVPNAEEFAEWIQ 281
>gnl|CDD|224124 COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense
mechanisms].
Length = 733
Score = 33.6 bits (77), Expect = 0.14
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 176 SHIVMDEIH--ERSMISDFLLAILKDVTDKRKDLKLILMSATL 216
S +++DE+H + LLA+L+ + + ++LMSATL
Sbjct: 340 SLVILDEVHLYADETMLAALLALLEAL--AEAGVPVLLMSATL 380
>gnl|CDD|187770 cd09639, Cas3_I, CRISPR/Cas system-associated protein Cas3. CRISPR
(Clustered Regularly Interspaced Short Palindromic
Repeats) and associated Cas proteins comprise a system
for heritable host defense by prokaryotic cells against
phage and other foreign DNA; DEAD/DEAH box helicase DNA
helicase cas3'; Often but not always is fused to HD
nuclease domain; signature gene for Type I.
Length = 353
Score = 33.2 bits (76), Expect = 0.17
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 5/43 (11%)
Query: 176 SHIVMDEIH--ERSMISDFLLAILKDVTDKRKDLKLILMSATL 216
S ++ DE+H + ++ +LA+L+ + K D+ ++LMSATL
Sbjct: 125 SLLIFDEVHFYDEYTLA-LILAVLEVL--KDNDVPILLMSATL 164
>gnl|CDD|233483 TIGR01587, cas3_core, CRISPR-associated helicase Cas3. This model
represents the highly conserved core region of an
alignment of Cas3, a protein found in association with
CRISPR repeat elements in a broad range of bacteria and
archaea. Cas3 appears to be a helicase, with regions
found by pfam00270 (DEAD/DEAH box helicase) and
pfam00271 (Helicase conserved C-terminal domain). Some
but not all members have an N-terminal HD domain region
(pfam01966) that is not included within this model
[Mobile and extrachromosomal element functions, Other].
Length = 358
Score = 33.2 bits (76), Expect = 0.18
Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 5/43 (11%)
Query: 176 SHIVMDEIH--ERSMISDFLLAILKDVTDKRKDLKLILMSATL 216
S ++ DE+H + ++ +LA+L+ + K D+ ++LMSATL
Sbjct: 126 SLLIFDEVHFYDEYTLA-LILAVLEVL--KDNDVPILLMSATL 165
>gnl|CDD|223587 COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA
replication, recombination, and repair / Transcription /
Translation, ribosomal structure and biogenesis].
Length = 513
Score = 31.7 bits (72), Expect = 0.55
Identities = 26/88 (29%), Positives = 42/88 (47%), Gaps = 12/88 (13%)
Query: 134 GSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPI-LSGVSHIVMDE---IHERSMI 189
G S+ QI K I+ T G L ++++ + LSGV +V+DE + + I
Sbjct: 137 GVSIRKQIEALKRGVD----IVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMGFI 192
Query: 190 SDFLLAILKDVTDKRKDLKLILMSATLN 217
D + ILK + D + +L SAT+
Sbjct: 193 DD-IEKILKAL---PPDRQTLLFSATMP 216
>gnl|CDD|131775 TIGR02728, spore_gerQ, spore coat protein GerQ. Members of this
protein family are the spore coat protein GerQ of
endospore-forming Firmicutes (low GC Gram-positive
bacteria). This protein is cross-linked by a spore
coat-associated transglutaminase [Cellular processes,
Sporulation and germination].
Length = 82
Score = 29.1 bits (65), Expect = 0.67
Identities = 11/38 (28%), Positives = 21/38 (55%)
Query: 239 PVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGG 276
PV++ Y+E++L M R + M+ + E ++ F G
Sbjct: 2 PVEQSYIENILRMNRGKTATVYMTFENSPEWAARVFRG 39
>gnl|CDD|224122 COG1201, Lhr, Lhr-like helicases [General function prediction
only].
Length = 814
Score = 29.9 bits (68), Expect = 1.8
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 13/66 (19%)
Query: 170 PILSGVSHIVMDEIHERSMISD-------FLLAILKDVTDKRKDLKLILMSATL-NAEKF 221
+L V ++++DEIH + L L+++ D + I +SAT+ E+
Sbjct: 145 ELLRDVRYVIVDEIHA--LAESKRGVQLALSLERLRELA---GDFQRIGLSATVGPPEEV 199
Query: 222 SQFFGG 227
++F G
Sbjct: 200 AKFLVG 205
>gnl|CDD|173701 cd05610, STKc_MASTL, Catalytic domain of the Protein
Serine/Threonine Kinase, Microtubule-associated
serine/threonine-like kinase. Serine/Threonine Kinases
(STKs), Microtubule-associated serine/threonine (MAST)
kinase subfamily, MAST-like (MASTL) kinases, catalytic
(c) domain. STKs catalyze the transfer of the
gamma-phosphoryl group from ATP to serine/threonine
residues on protein substrates. The MAST kinase
subfamily is part of a larger superfamily that includes
the catalytic domains of other protein STKs, protein
tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. MAST kinases contain an N-terminal domain of
unknown function, a central catalytic domain, and a
C-terminal PDZ domain that mediates protein-protein
interactions. The MASTL kinases in this group carry only
a catalytic domain, which contains a long insertion
relative to MAST kinases. The human MASTL gene has also
been labelled FLJ14813. A missense mutation in FLJ14813
is associated with autosomal dominant thrombocytopenia.
To date, the function of MASTL is unknown.
Length = 669
Score = 29.5 bits (66), Expect = 2.9
Identities = 11/60 (18%), Positives = 23/60 (38%)
Query: 75 YTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPG 134
+ G T ++ L +R + T P++ S +A+ + E D+ + G
Sbjct: 364 NGNQSTGLTMEIQSLNLSKHKSRPKFLAGNEKRTGPKKKSNPVVAKNLMCELDDDGEKDG 423
>gnl|CDD|223733 COG0661, AarF, Predicted unusual protein kinase [General function
prediction only].
Length = 517
Score = 29.2 bits (66), Expect = 3.3
Identities = 25/99 (25%), Positives = 37/99 (37%), Gaps = 21/99 (21%)
Query: 206 DLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQEY--YLEDVLNMTRKDLKLILMSA 263
DLKL+ A L + G L + V E+ L + L+ R+
Sbjct: 168 DLKLLRRLARL----IKRLPPGGRRLDLVEV---VDEFEKRLREELDYRRE--------- 211
Query: 264 TLNAEKFSQFFGGAPILHIPGFTYPVQEYYLEDVLNMTR 302
NAE+F + F P +++P EY VL M
Sbjct: 212 AANAERFRENFKDDPDVYVP---KVYWEYTTRRVLTMEW 247
>gnl|CDD|221955 pfam13173, AAA_14, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily.
Length = 127
Score = 27.5 bits (62), Expect = 4.6
Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 9/77 (11%)
Query: 171 ILSGVSHIVMDEIHERSMISDFLLAILKDVTDKRKDLKLILM--SATLNAEKFSQFFGG- 227
+L G ++ +DEI + + D+ A+ K + D ++L++IL S+ L +++ + G
Sbjct: 57 LLPGKKYLFLDEIQK---VPDWEDAL-KRLYDDGRNLRIILTGSSSLLLSKEIATSLAGR 112
Query: 228 APILHIPGFTYPVQEYY 244
A L + ++ +E+
Sbjct: 113 AEELELYPLSF--EEFL 127
>gnl|CDD|225960 COG3426, COG3426, Butyrate kinase [Energy production and
conversion].
Length = 358
Score = 28.5 bits (64), Expect = 5.1
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 247 DVLNMTRKDLKLILMSATLNAEKFSQFFGGAPILH-IPGFTYPVQEYYLEDVLN 299
D + + + N KF G +L IPG TY V E L+D+ N
Sbjct: 46 DQFEFRKDAILEFIDEQGYNISKFDAVVGRGGLLRPIPGGTYVVNEKMLKDLKN 99
Score = 27.8 bits (62), Expect = 8.8
Identities = 15/49 (30%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 203 KRKDLKLILMSATLNAEKFSQFFGGAPILH-IPGFTYPVQEYYLEDVLN 250
++ + + N KF G +L IPG TY V E L+D+ N
Sbjct: 51 RKDAILEFIDEQGYNISKFDAVVGRGGLLRPIPGGTYVVNEKMLKDLKN 99
>gnl|CDD|222253 pfam13597, NRDD, Anaerobic ribonucleoside-triphosphate reductase.
Length = 542
Score = 28.3 bits (64), Expect = 5.8
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 236 FTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFF 274
FT+P+ Y + + D L M+A A+ FF
Sbjct: 203 FTFPIPTYNITTDFWESPNDEDLFEMTAKYGAKYGQNFF 241
>gnl|CDD|239307 cd03009, TryX_like_TryX_NRX, Tryparedoxin (TryX)-like family, TryX
and nucleoredoxin (NRX) subfamily; TryX and NRX are
thioredoxin (TRX)-like protein disulfide oxidoreductases
that alter the redox state of target proteins via the
reversible oxidation of an active center CXXC motif.
TryX is involved in the regulation of oxidative stress
in parasitic trypanosomatids by reducing TryX
peroxidase, which in turn catalyzes the reduction of
hydrogen peroxide and organic hydroperoxides. TryX
derives reducing equivalents from reduced trypanothione,
a polyamine peptide conjugate unique to trypanosomatids,
which is regenerated by the NADPH-dependent flavoprotein
trypanothione reductase. Vertebrate NRX is a 400-amino
acid nuclear protein with one redox active TRX domain
containing a CPPC active site motif followed by one
redox inactive TRX-like domain. Mouse NRX transcripts
are expressed in all adult tissues but is restricted to
the nervous system and limb buds in embryos. Plant NRX,
longer than the vertebrate NRX by about 100-200 amino
acids, is a nuclear protein containing a redox inactive
TRX-like domain between two redox active TRX domains.
Both vertebrate and plant NRXs show thiol oxidoreductase
activity in vitro. Their localization in the nucleus
suggests a role in the redox regulation of nuclear
proteins such as transcription factors.
Length = 131
Score = 27.2 bits (61), Expect = 6.8
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 235 GFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGGAPILHIP 283
FT + E+Y + L + K+ +++ +S + E F+ +F P L +P
Sbjct: 35 AFTPKLVEFYEK--LKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVP 81
Score = 26.9 bits (60), Expect = 8.5
Identities = 9/42 (21%), Positives = 22/42 (52%)
Query: 193 LLAILKDVTDKRKDLKLILMSATLNAEKFSQFFGGAPILHIP 234
L+ + + + K+ +++ +S + E F+ +F P L +P
Sbjct: 40 LVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVP 81
>gnl|CDD|131740 TIGR02693, arsenite_ox_L, arsenite oxidase, large subunit. This
model represents the large subunit of an arsenite
oxidase complex. The small subunit is a Rieske protein.
Homologs to both large and small subunits that score in
the gray zone between the set trusted and noise bit
score cutoffs for the respective models are found in
Aeropyrum pernix K1 and in Sulfolobus tokodaii str. 7.
This enzyme acts in energy metabolim by arsenite
oxidation, rather than detoxification by reduction of
arsenate to arsenite prior to export [Energy metabolism,
Electron transport].
Length = 806
Score = 28.0 bits (62), Expect = 7.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 105 IMVTQPRRISAIAIAERVAQER 126
++V PRR S+ +AE+ A +R
Sbjct: 269 LIVVDPRRTSSYTVAEQTAPDR 290
>gnl|CDD|234063 TIGR02928, TIGR02928, orc1/cdc6 family replication initiation
protein. Members of this protein family are found
exclusively in the archaea. This set of DNA binding
proteins shows homology to the origin recognition
complex subunit 1/cell division control protein 6 family
in eukaryotes. Several members may be found in genome
and interact with each other [DNA metabolism, DNA
replication, recombination, and repair].
Length = 365
Score = 27.6 bits (62), Expect = 9.9
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 8/46 (17%)
Query: 65 LSPILS---PS--IIYTSTGCGKTTQVPQFILD--DEIARNRGSEC 103
L PIL PS IY TG GKT V ++++ +E A +R
Sbjct: 31 LRPILRGSRPSNVFIYGKTGTGKTA-VTKYVMKELEEAAEDRDVRV 75
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.137 0.401
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,343,108
Number of extensions: 1583704
Number of successful extensions: 1464
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1431
Number of HSP's successfully gapped: 51
Length of query: 319
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 222
Effective length of database: 6,635,264
Effective search space: 1473028608
Effective search space used: 1473028608
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.7 bits)