RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy496
(319 letters)
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 86.1 bits (212), Expect = 2e-21
Identities = 18/144 (12%), Positives = 40/144 (27%), Gaps = 19/144 (13%)
Query: 72 SIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCG 131
+ ++ TG GK+T+VP ++V P + + +++
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQG--------YKVLVLNPSVAATLGFGAYMSKAHGVDPN 62
Query: 132 RPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISD 191
+ + + I+ DE H S
Sbjct: 63 IR-----------TGVRTITTGSPITYSTYGKFLADGGCSGGAYDIIICDECHSTDATSI 111
Query: 192 FLLAILKDVTDKRKDLKLILMSAT 215
+ + D + ++L +AT
Sbjct: 112 LGIGTVLDQAETAGARLVVLATAT 135
Score = 32.5 bits (73), Expect = 0.027
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 8/37 (21%)
Query: 19 GCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISA 55
G GK+T+VP ++V P +
Sbjct: 18 GSGKSTKVPAAYAAQ--------GYKVLVLNPSVAAT 46
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 79.6 bits (195), Expect = 1e-17
Identities = 30/161 (18%), Positives = 52/161 (32%), Gaps = 15/161 (9%)
Query: 73 IIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGR 132
I+ G GKT + I+ + I R ++ P R+ A + E +
Sbjct: 13 IMDLHPGAGKTKRYLPAIVREAIKRGLR----TLILAPTRVVAAEMEEALR--------- 59
Query: 133 PGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDF 192
G + YQ + R + + S + + I+MDE H S
Sbjct: 60 -GLPIRYQTPAIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIA 118
Query: 193 LLAILKDVTDKRKDLKLILMSATLNAEKFSQFFGGAPILHI 233
+ + + I M+AT + API+
Sbjct: 119 ARGYISTRVE-MGEAAGIFMTATPPGSRDPFPQSNAPIMDE 158
Score = 39.1 bits (90), Expect = 4e-04
Identities = 14/82 (17%), Positives = 26/82 (31%), Gaps = 7/82 (8%)
Query: 19 GCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTST 78
G GKT + I+ + I R ++ P R+ A + + L PI + +
Sbjct: 19 GAGKTKRYLPAIVREAIKRGLR----TLILAPTRVVAAE-MEEALRGLPIRYQTPAIRAE 73
Query: 79 GCGKTTQV--PQFILDDEIARN 98
G+ +
Sbjct: 74 HTGREIVDLMCHATFTMRLLSP 95
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 51.6 bits (122), Expect = 8e-09
Identities = 24/143 (16%), Positives = 39/143 (27%), Gaps = 15/143 (10%)
Query: 73 IIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGR 132
++ G GKT + IL + R + + ++ G
Sbjct: 11 VLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLS-----------EMKEAFHGL 59
Query: 133 PGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDF 192
V + + R I L M + I+MDE H S
Sbjct: 60 D---VKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIA 116
Query: 193 LLAILKDVTDKRKDLKLILMSAT 215
+ + ILM+AT
Sbjct: 117 ARGWAAHR-ARANESATILMTAT 138
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 40.0 bits (93), Expect = 2e-04
Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 7/87 (8%)
Query: 134 GSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPI-LSGVSHIVMDEIHERSMISDF 192
G ++ QI+ K +I+ T G + + + + L V + ++DE + F
Sbjct: 109 GKAIYPQIKA-----LKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEAD-EMLNMGF 162
Query: 193 LLAILKDVTDKRKDLKLILMSATLNAE 219
+ + K + KD +++L SAT+ E
Sbjct: 163 IKDVEKILNACNKDKRILLFSATMPRE 189
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 35.3 bits (80), Expect = 0.004
Identities = 31/166 (18%), Positives = 61/166 (36%), Gaps = 18/166 (10%)
Query: 73 IIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGR 132
++ T GKT ++ R + P R A E +
Sbjct: 44 LLAMPTAAGKTLLAEMAMV-----REAIKGGKSLYVVPLRALAGEKYESFKKWEKIGLRI 98
Query: 133 PGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPI-LSGVSHIVMDEIHE-----R 186
S+ Y+ R E I+ T+ ++++ + VS +V+DEIH R
Sbjct: 99 GISTGDYESRDE---HLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKR 155
Query: 187 SMISDFLLAILKDVTDKRKDLKLILMSATL-NAEKFSQFFGGAPIL 231
+ L+ ++ + K L++I +SAT N + +++ +
Sbjct: 156 GATLEILVTKMRRM---NKALRVIGLSATAPNVTEIAEWLDADYYV 198
Score = 30.3 bits (67), Expect = 0.21
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 241 QEYYLEDVLNMTRKDLKLILMSATL-NAEKFSQFFGGAPIL 280
L + K L++I +SAT N + +++ +
Sbjct: 158 TLEILVTKMRRMNKALRVIGLSATAPNVTEIAEWLDADYYV 198
>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 264
Score = 33.2 bits (75), Expect = 0.032
Identities = 25/196 (12%), Positives = 62/196 (31%), Gaps = 12/196 (6%)
Query: 20 CGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSIIYTSTG 79
+ ++ ++A +T ++ + + N ++ P+ ++ G
Sbjct: 57 EREKHGGIPKKIEGKLAEEFIKSLPFKLTNAQKRAHQEIRNDMISEKPM--NRLLQGDVG 114
Query: 80 CGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGRPGSSVGY 139
GKT + + ++ T I + + +
Sbjct: 115 SGKTVVA--QLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTP 172
Query: 140 QIRLEKELPRKRGSILYCTAGILPEVMQSDPILSGVSHIVMDEIHERSMISDFLLAILKD 199
+ + + + G I G ++Q D + +++DE H + L
Sbjct: 173 SEKEKIKSGLRNGQIDVVI-GTHA-LIQEDVHFKNLGLVIIDEQHRFGVKQREAL----- 225
Query: 200 VTDKRKDLKLILMSAT 215
+K K + ++MSAT
Sbjct: 226 -MNKGKMVDTLVMSAT 240
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 32.9 bits (74), Expect = 0.035
Identities = 21/148 (14%), Positives = 48/148 (32%), Gaps = 2/148 (1%)
Query: 73 IIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGR 132
I +G GKT IL + ++ ++ I +
Sbjct: 53 IAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGASCH 112
Query: 133 PGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPI-LSGVSHIVMDEIHERSMISD 191
++L + I+ T G + +++ + + V+DE +
Sbjct: 113 ACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD-EMLSRG 171
Query: 192 FLLAILKDVTDKRKDLKLILMSATLNAE 219
F I + +++L+SAT+ ++
Sbjct: 172 FKDQIYDIFQKLNSNTQVVLLSATMPSD 199
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 32.2 bits (72), Expect = 0.063
Identities = 23/156 (14%), Positives = 43/156 (27%), Gaps = 13/156 (8%)
Query: 73 IIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVAQERDEQCGR 132
TG GKT+ L +A I T I A + A++
Sbjct: 62 AATAPTGVGKTSFGLAMSLF--LALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTEN 119
Query: 133 PGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSD-PILSGVSHIVMDEIHE------ 185
+I ++ + + + + L I +D++
Sbjct: 120 LIGYYHGRIPKREKENFMQNLRNFKIVITTTQFLSKHYRELGHFDFIFVDDVDAILKASK 179
Query: 186 RSMISDFLLAILKDVTDKRKDLK----LILMSATLN 217
LL D+ K + L++ +AT
Sbjct: 180 NVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK 215
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 29.5 bits (65), Expect = 0.43
Identities = 15/79 (18%), Positives = 36/79 (45%), Gaps = 1/79 (1%)
Query: 142 RLEKELPRKRGSILYCTAGILPEVMQSDPI-LSGVSHIVMDEIHERSMISDFLLAILKDV 200
+ E+ L + I+ T G + + ++ + L + H ++DE + D + +
Sbjct: 112 KDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 171
Query: 201 TDKRKDLKLILMSATLNAE 219
+ ++++ SATL+ E
Sbjct: 172 RMTPHEKQVMMFSATLSKE 190
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 29.4 bits (65), Expect = 0.49
Identities = 25/157 (15%), Positives = 53/157 (33%), Gaps = 2/157 (1%)
Query: 64 TLSPILSPSIIYTSTGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123
+ PI+ + G I + ++ P R A+ I + V
Sbjct: 40 AIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVM 99
Query: 124 QERDEQCGRPGSSVGYQIRLEKELPRKRGSILYCTAGILPEVMQSDPI-LSGVSHIVMDE 182
+ + +G +E + I+ T G + + +Q + ++DE
Sbjct: 100 ALAFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 159
Query: 183 IHERSMISDFLLAILKDVTDKRKDLKLILMSATLNAE 219
+ S F I + T +++L+SAT+ +
Sbjct: 160 AD-EMLSSGFKEQIYQIFTLLPPTTQVVLLSATMPND 195
>g1o7d.3 c.6.2.1 (A:51-342,B:347-384) Lysosomal alpha-mannosidase
{Cow (Bos taurus) [TaxId: 9913]}
Length = 330
Score = 27.3 bits (60), Expect = 2.4
Identities = 11/76 (14%), Positives = 22/76 (28%), Gaps = 11/76 (14%)
Query: 232 HI-PGFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAEKFSQFFGGAPILHIPGFTYPVQ 290
H G+ V +Y+ N+ ++ IL S + F Y
Sbjct: 22 HDDVGWLKTVDQYFYGIYNNIQPAGVQYILDSVISSLLANPTRR----------FIYVEI 71
Query: 291 EYYLEDVLNMTRTLKR 306
++ T ++
Sbjct: 72 AFFSRWWRQQTNATQK 87
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 26.8 bits (58), Expect = 2.9
Identities = 18/137 (13%), Positives = 36/137 (26%), Gaps = 20/137 (14%)
Query: 73 IIYTSTGCGKTT---------QVPQFILDDEIARNRGSECCIMVTQPRRISAIAIAERVA 123
+++ G GKTT V + G I+ + I E
Sbjct: 39 LLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHR 98
Query: 124 QERDEQCGRPGSSVGYQI-----------RLEKELPRKRGSILYCTAGILPEVMQSDPIL 172
R + + + + + ELPR G++ + S +
Sbjct: 99 LSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLSRFGI 158
Query: 173 SGVSHIVMDEIHERSMI 189
E + ++
Sbjct: 159 VEHLEYYTPEELAQGVM 175
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 26.5 bits (57), Expect = 3.5
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 233 IPGFTYPVQEYYLEDVLNMTRKDLKLILMSATLNAE 268
+ED++ K+ +++L SAT
Sbjct: 155 ADKLLSQDFVQIMEDIILTLPKNRQILLYSATFPLS 190
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 26.2 bits (56), Expect = 5.2
Identities = 6/33 (18%), Positives = 15/33 (45%)
Query: 236 FTYPVQEYYLEDVLNMTRKDLKLILMSATLNAE 268
++ + KDL++++ SAT+ +
Sbjct: 159 MLDMGFITDVDQIAARMPKDLQMLVFSATIPEK 191
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 25.9 bits (56), Expect = 7.3
Identities = 7/54 (12%), Positives = 14/54 (25%)
Query: 17 LAGCGKTTQVPQFILDDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILS 70
AG GK+ Q + + + + + L + S
Sbjct: 52 RAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFTDILLMLKS 105
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 25.5 bits (56), Expect = 7.8
Identities = 33/197 (16%), Positives = 61/197 (30%), Gaps = 36/197 (18%)
Query: 18 AGCGKTTQVPQFIL----DDEIARNRGSECCIMVTQPRRISAIALINKCLTLSPILSPSI 73
GKT+ I+ ++ + CI V ++ S +A + K LT + + +I
Sbjct: 77 RQTGKTSIAIDTIINQKRFNDGTDEKKKLYCIYVAIGQKRSTVAQLVKRLTDADAMKYTI 136
Query: 74 IYTSTGC---GKTTQVPQFILDDEIA---RNRGSECCIMVTQPRRISAIAIAERVAQERD 127
+ ++T P + R+ G I+ +S A+A R +
Sbjct: 137 VVSATASDAAPLQYLAPYSGC--SMGEYFRDNGKHALIIYDD---LSKQAVAYR---QMS 188
Query: 128 EQCGRPGSSVGYQIRLEKELPR------------KRGSILYCTAGILPEVMQSDPILSGV 175
RP Y + R GS+ S I + V
Sbjct: 189 LLLRRPPGREAYPGDVFYLHSRLLERAAKMNDAFGGGSLTALPVIETQAGDVSAYIPTNV 248
Query: 176 -----SHIVMD-EIHER 186
I ++ E+ +
Sbjct: 249 ISITDGQIFLETELFYK 265
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 25.6 bits (55), Expect = 8.7
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 245 LEDVLNMTRKDLKLILMSATLNAE--KFSQFFGGAPI 279
+ DV +++L+SATL E + + F PI
Sbjct: 180 IYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPI 216
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.137 0.401
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,160,437
Number of extensions: 53584
Number of successful extensions: 264
Number of sequences better than 10.0: 1
Number of HSP's gapped: 256
Number of HSP's successfully gapped: 31
Length of query: 319
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 234
Effective length of database: 1,240,546
Effective search space: 290287764
Effective search space used: 290287764
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.6 bits)