BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4960
(341 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|8PCH|A Chain A, Crystal Structure Of Porcine Cathepsin H Determined At 2.1
Angstrom Resolution: Location Of The Mini-Chain
C-Terminal Carboxyl Group Defines Cathepsin H
Aminopeptidase Function
pdb|1NB3|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|A Chain A, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|B Chain B, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|C Chain C, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|D Chain D, Crystal Structure Of Stefin A In Complex With Cathepsin H
Length = 220
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 81/217 (37%), Positives = 126/217 (58%), Gaps = 13/217 (5%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVEC--D 184
P S+DWR+ K ++PV++QG CGSCW F+TT LES VA+ + L++ QLV+C +
Sbjct: 2 PPSMDWRK-KGNFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQN 60
Query: 185 HGNLNCNGGNIDVAFEYVK-QYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTS 243
N C GG AFEY++ G+ + YPY+ +++ C ++ +KA FV+D +
Sbjct: 61 FNNHGCQGGLPSQAFEYIRYNKGIMGEDTYPYKGQDD---HCKFQPDKAIAFVKDVANIT 117
Query: 244 GVDHMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDW---ACN--PHKLDHAVAIVGYGEK 298
D ++++ + ++ + D R+ + +C+ P K++HAV VGYGE+
Sbjct: 118 MNDEEA-MVEAVALYNPVSFAFEVTNDFLMYRKGIYSSTSCHKTPDKVNHAVLAVGYGEE 176
Query: 299 NGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYA 335
NGI WIV+NSWG +GYF IERG N CG+ + A
Sbjct: 177 NGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACA 213
>pdb|3QT4|A Chain A, Structure Of Digestive Procathepsin L 3 Of Tenebrio
Molitor Larval Midgut
Length = 329
Score = 130 bits (328), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 124/220 (56%), Gaps = 15/220 (6%)
Query: 123 KGPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVE 182
K PL S+DWR + V + V+ QG+CGS W+F+TT +E Q+AL + L LS+ L++
Sbjct: 113 KKPLAASVDWRSNAV---SEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLID 169
Query: 183 CD--HGNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTW 240
C +GN C+GG +D AF Y+ YG+ S++ YPY + + C ++ ++ + +
Sbjct: 170 CSSSYGNAGCDGGWMDSAFSYIHDYGIMSESAYPYEAQGDY---CRFDSSQSVTTLSGYY 226
Query: 241 -VTSGVDHMMH--LLQSGPIGVYLNHR-LIESYDGNPIRRNDWACNPHKLDHAVAIVGYG 296
+ SG ++ + + Q+GP+ V ++ ++ Y G D CN L+H V +VGYG
Sbjct: 227 DLPSGDENSLADAVGQAGPVAVAIDATDELQFYSGGLFY--DQTCNQSDLNHGVLVVGYG 284
Query: 297 EKNGILTWIVRNSWGDIGPDHGYF-QIERGANACGIESYA 335
NG WI++NSWG + GY+ Q+ N CGI + A
Sbjct: 285 SDNGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGIATAA 324
>pdb|3QJ3|A Chain A, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
pdb|3QJ3|B Chain B, Structure Of Digestive Procathepsin L2 Proteinase From
Tenebrio Molitor Larval Midgut
Length = 331
Score = 128 bits (321), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 134/270 (49%), Gaps = 26/270 (9%)
Query: 84 SDRSPQEILQRT-GLRLTGKEKERLEADRERVKKFLNERKKGPLPKSLDWRQSKVKVLNP 142
+D +P+E+ T GL + + + R LN + P S DWR + ++P
Sbjct: 75 TDMTPEEMKAYTHGLIMPADLHKNGIPIKTREDLGLNASVR--YPASFDWRDQGM--VSP 130
Query: 143 VESQGRCGSCWAFATTAILESQVALLKKTLY--PLSKSQLVECDHGNLNCNGGNIDVAFE 200
V++QG CGS WAF++T +ESQ+ + Y +S+ QLV+C L C+GG ++ AF
Sbjct: 131 VKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVSEQQLVDCVPNALGCSGGWMNDAFT 190
Query: 201 YVKQYG-LESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGVDHMM---HLLQSGP 256
YV Q G ++S+ YPY + C Y+ + + SG D M + GP
Sbjct: 191 YVAQNGGIDSEGAYPYEMADG---NCHYDPNQVAARLSGYVYLSGPDENMLADMVATKGP 247
Query: 257 IGVYLNHR-LIESYDG----NPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWG 311
+ V + SY G NP C +K HAV IVGYG +NG W+V+NSWG
Sbjct: 248 VAVAFDADDPFGSYSGGVYYNPT------CETNKFTHAVLIVGYGNENGQDYWLVKNSWG 301
Query: 312 DIGPDHGYFQIERGA-NACGIESYAYLASV 340
D GYF+I R A N CGI A + ++
Sbjct: 302 DGWGLDGYFKIARNANNHCGIAGVASVPTL 331
>pdb|2O6X|A Chain A, Crystal Structure Of Procathepsin L1 From Fasciola
Hepatica
Length = 310
Score = 124 bits (312), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 121/224 (54%), Gaps = 18/224 (8%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185
+P +DWR+S + V+ QG CGS WAF+TT +E Q ++T S+ QLV+C
Sbjct: 92 VPDKIDWRESGY--VTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSR 149
Query: 186 --GNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTW-VT 242
GN C GG ++ A++Y+KQ+GLE+++ YPY E +C Y K+ V + V
Sbjct: 150 PWGNNGCGGGLMENAYQYLKQFGLETESSYPYTAVEG---QCRYNKQLGVAKVTGFYTVH 206
Query: 243 SGVDHMMHLL--QSGPIGVYLNHRLIESYDGNPIRRNDW---ACNPHKLDHAVAIVGYGE 297
SG + + L GP V ++ +ES D R + C+P +++HAV VGYG
Sbjct: 207 SGSEVELKNLVGAEGPAAVAVD---VES-DFMMYRSGIYQSQTCSPLRVNHAVLAVGYGT 262
Query: 298 KNGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESYAYLASV 340
+ G WIV+NSWG + GY ++ R N CGI S A L V
Sbjct: 263 QGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLASLPMV 306
>pdb|1M6D|A Chain A, Crystal Structure Of Human Cathepsin F
pdb|1M6D|B Chain B, Crystal Structure Of Human Cathepsin F
Length = 214
Score = 123 bits (308), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/217 (35%), Positives = 118/217 (54%), Gaps = 8/217 (3%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHG 186
P DWR + V+ QG CGSCWAF+ T +E Q L + TL LS+ +L++CD
Sbjct: 2 PPEWDWRSKGA--VTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKM 59
Query: 187 NLNCNGGNIDVAFEYVKQYG-LESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV 245
+ C GG A+ +K G LE++ DY Y+ C + EKAKV++QD+ S
Sbjct: 60 DKACMGGLPSNAYSAIKNLGGLETEDDYSYQGHMQ---SCQFSAEKAKVYIQDSVELSQN 116
Query: 246 DHMMH--LLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILT 303
+ + L + GPI V +N ++ Y R C+P +DHAV +VGYG+++ +
Sbjct: 117 EQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLCSPWLIDHAVLLVGYGQRSDVPF 176
Query: 304 WIVRNSWGDIGPDHGYFQIERGANACGIESYAYLASV 340
W ++NSWG + GY+ + RG+ ACG+ + A A V
Sbjct: 177 WAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVV 213
>pdb|1FH0|A Chain A, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
pdb|1FH0|B Chain B, Crystal Structure Of Human Cathepsin V Complexed With An
Irreversible Vinyl Sulfone Inhibitor
Length = 221
Score = 118 bits (296), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 85/230 (36%), Positives = 115/230 (50%), Gaps = 24/230 (10%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD- 184
LPKS+DWR K + PV++Q +CGSCWAF+ T LE Q+ L LS+ LV+C
Sbjct: 1 LPKSVDWR--KKGYVTPVKNQKQCGSCWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSR 58
Query: 185 -HGNLNCNGGNIDVAFEYVKQY-GLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVT 242
GN CNGG + AF+YVK+ GL+S+ YPY + I C Y E + QDT T
Sbjct: 59 PQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEI---CKYRPENS--VAQDTGFT 113
Query: 243 SGVDH-----MMHLLQSGPIGVYLN--HRLIESYDGNPIRRNDWACNPHKLDHAVAIVGY 295
M + GPI V ++ H + Y D C+ LDH V +VGY
Sbjct: 114 VVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPD--CSSKNLDHGVLVVGY 171
Query: 296 G----EKNGILTWIVRNSWGDIGPDHGYFQIERGANA-CGIESYAYLASV 340
G + W+V+NSWG +GY +I + N CGI + A +V
Sbjct: 172 GFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 221
>pdb|7PCK|A Chain A, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|B Chain B, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|C Chain C, Crystal Structure Of Wild Type Human Procathepsin K
pdb|7PCK|D Chain D, Crystal Structure Of Wild Type Human Procathepsin K
pdb|1BY8|A Chain A, The Crystal Structure Of Human Procathepsin K
Length = 314
Score = 117 bits (292), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 84/257 (32%), Positives = 134/257 (52%), Gaps = 18/257 (7%)
Query: 85 DRSPQEILQR-TGLRLTGKEKERLEADRERVKKFLNERKKGPLPKSLDWRQSKVKVLNPV 143
D + +E++Q+ TGL++ L R ++ E + G P S+D+R K + PV
Sbjct: 65 DMTSEEVVQKMTGLKVP------LSHSRSNDTLYIPEWE-GRAPDSVDYR--KKGYVTPV 115
Query: 144 ESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYV- 202
++QG+CGSCWAF++ LE Q+ L LS LV+C N C GG + AF+YV
Sbjct: 116 KNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQ 175
Query: 203 KQYGLESQADYPYRNK-ENITFRCTYEKEKAKVFVQDTWVTSGVDHMMH--LLQSGPIGV 259
K G++S+ YPY + E+ + T + K + + + + G + + + + GP+ V
Sbjct: 176 KNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYRE---IPEGNEKALKRAVARVGPVSV 232
Query: 260 YLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGY 319
++ L + D +CN L+HAV VGYG + G WI++NSWG+ + GY
Sbjct: 233 AIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGY 292
Query: 320 FQIERGA-NACGIESYA 335
+ R NACGI + A
Sbjct: 293 ILMARNKNNACGIANLA 309
>pdb|2F1G|A Chain A, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2F1G|B Chain B, Cathepsin S In Complex With Non-Covalent
2-(Benzoxazol-2-Ylamino)- Acetamide
pdb|2HH5|B Chain B, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2HH5|A Chain A, Crystal Structure Of Cathepsin S In Complex With A Zinc
Mediated Non-Covalent Arylaminoethyl Amide
pdb|2H7J|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2H7J|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor.
pdb|2HXZ|A Chain A, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|B Chain B, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HXZ|C Chain C, Crystal Structure Of Cathepsin S In Complex With A
Nonpeptidic Inhibitor (hexagonal Spacegroup)
pdb|2HHN|A Chain A, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2HHN|B Chain B, Cathepsin S In Complex With Non Covalent Arylaminoethyl
Amide.
pdb|2OP3|A Chain A, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
pdb|2OP3|B Chain B, The Structure Of Cathepsin S With A Novel 2-
Arylphenoxyacetaldehyde Inhibitor Derived By The
Substrate Activity Screening (Sas) Method
Length = 220
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 115/217 (52%), Gaps = 14/217 (6%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD- 184
LP S+DWR+ + V+ QG CG+CWAF+ LE+Q+ L L LS LV+C
Sbjct: 4 LPDSVDWREKGC--VTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCST 61
Query: 185 --HGNLNCNGGNIDVAFEY-VKQYGLESQADYPYRNKENITFRCTYE-KEKAKVFVQDTW 240
+GN CNGG + AF+Y + G++S A YPY+ + +C Y+ K +A + T
Sbjct: 62 EKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYRAATCSKYTE 118
Query: 241 VTSGVDHMMH--LLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEK 298
+ G + ++ + GP+ V ++ R + + +C ++H V +VGYG+
Sbjct: 119 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT-QNVNHGVLVVGYGDL 177
Query: 299 NGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESY 334
NG W+V+NSWG + GY ++ R N CGI S+
Sbjct: 178 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASF 214
>pdb|3OVX|A Chain A, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
pdb|3OVX|B Chain B, Cathepsin S In Complex With A Covalent Inhibitor With An
Aldehyde Warhead
Length = 218
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 115/217 (52%), Gaps = 14/217 (6%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD- 184
LP S+DWR+ + V+ QG CG+CWAF+ LE+Q+ L L LS LV+C
Sbjct: 2 LPDSVDWREKGC--VTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCST 59
Query: 185 --HGNLNCNGGNIDVAFEY-VKQYGLESQADYPYRNKENITFRCTYE-KEKAKVFVQDTW 240
+GN CNGG + AF+Y + G++S A YPY+ + +C Y+ K +A + T
Sbjct: 60 EKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYRAATCSKYTE 116
Query: 241 VTSGVDHMMH--LLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEK 298
+ G + ++ + GP+ V ++ R + + +C ++H V +VGYG+
Sbjct: 117 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT-QNVNHGVLVVGYGDL 175
Query: 299 NGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESY 334
NG W+V+NSWG + GY ++ R N CGI S+
Sbjct: 176 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASF 212
>pdb|3N3G|A Chain A, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N3G|B Chain B, 4-(3-Trifluoromethylphenyl)-Pyrimidine-2-Carbonitrile As
Cathepsin S Inhibitors: N3, Not N1 Is Critically
Important
pdb|3N4C|A Chain A, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
pdb|3N4C|B Chain B, 6-Phenyl-1h-Imidazo[4,5-C]pyridine-4-Carbonitrile As
Cathepsin S Inhibitors
Length = 217
Score = 116 bits (290), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 115/217 (52%), Gaps = 14/217 (6%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD- 184
LP S+DWR+ + V+ QG CG+CWAF+ LE+Q+ L L LS LV+C
Sbjct: 1 LPDSVDWREKGC--VTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCST 58
Query: 185 --HGNLNCNGGNIDVAFEY-VKQYGLESQADYPYRNKENITFRCTYE-KEKAKVFVQDTW 240
+GN CNGG + AF+Y + G++S A YPY+ + +C Y+ K +A + T
Sbjct: 59 EKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYRAATCSKYTE 115
Query: 241 VTSGVDHMMH--LLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEK 298
+ G + ++ + GP+ V ++ R + + +C ++H V +VGYG+
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT-QNVNHGVLVVGYGDL 174
Query: 299 NGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESY 334
NG W+V+NSWG + GY ++ R N CGI S+
Sbjct: 175 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASF 211
>pdb|1NPZ|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NPZ|B Chain B, Crystal Structures Of Cathepsin S Inhibitor Complexes
pdb|1NQC|A Chain A, Crystal Structures Of Cathepsin S Inhibitor Complexes
Length = 217
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 115/217 (52%), Gaps = 14/217 (6%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD- 184
LP S+DWR+ + V+ QG CG+CWAF+ LE+Q+ L L LS LV+C
Sbjct: 1 LPDSVDWREKGC--VTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVTLSAQNLVDCST 58
Query: 185 --HGNLNCNGGNIDVAFEY-VKQYGLESQADYPYRNKENITFRCTYE-KEKAKVFVQDTW 240
+GN CNGG + AF+Y + G++S A YPY+ + +C Y+ K +A + T
Sbjct: 59 EKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYRAATCSKYTE 115
Query: 241 VTSGVDHMMH--LLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEK 298
+ G + ++ + GP+ V ++ R + + +C ++H V +VGYG+
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT-QNVNHGVLVVGYGDL 174
Query: 299 NGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESY 334
NG W+V+NSWG + GY ++ R N CGI S+
Sbjct: 175 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASF 211
>pdb|2FQ9|A Chain A, Cathepsin S With Nitrile Inhibitor
pdb|2FQ9|B Chain B, Cathepsin S With Nitrile Inhibitor
pdb|2FRA|A Chain A, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRA|B Chain B, Human Cathepsin S With Cra-27934, A Nitrile Inhibitor
pdb|2FRQ|A Chain A, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FRQ|B Chain B, Human Cathepsin S With Inhibitor Cra-26871
pdb|2FT2|A Chain A, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FT2|B Chain B, Human Cathepsin S With Inhibitor Cra-29728
pdb|2FUD|A Chain A, Human Cathepsin S With Inhibitor Cra-27566
pdb|2FUD|B Chain B, Human Cathepsin S With Inhibitor Cra-27566
pdb|2G7Y|A Chain A, Human Cathepsin S With Inhibitor Cra-16981
pdb|2G7Y|B Chain B, Human Cathepsin S With Inhibitor Cra-16981
Length = 225
Score = 115 bits (289), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 115/217 (52%), Gaps = 14/217 (6%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD- 184
LP S+DWR+ + V+ QG CG+CWAF+ LE+Q+ L L LS LV+C
Sbjct: 2 LPDSVDWREKGC--VTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCST 59
Query: 185 --HGNLNCNGGNIDVAFEY-VKQYGLESQADYPYRNKENITFRCTYE-KEKAKVFVQDTW 240
+GN CNGG + AF+Y + G++S A YPY+ + +C Y+ K +A + T
Sbjct: 60 EKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYRAATCSKYTE 116
Query: 241 VTSGVDHMMH--LLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEK 298
+ G + ++ + GP+ V ++ R + + +C ++H V +VGYG+
Sbjct: 117 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT-QNVNHGVLVVGYGDL 175
Query: 299 NGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESY 334
NG W+V+NSWG + GY ++ R N CGI S+
Sbjct: 176 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASF 212
>pdb|2G6D|A Chain A, Human Cathepsin S Mutant With Vinyl Sulfone Inhibitor Cra-
14009
Length = 217
Score = 115 bits (288), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 115/217 (52%), Gaps = 14/217 (6%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD- 184
LP S+DWR+ + V+ QG CG+CWAF+ LE+Q+ L L LS LV+C
Sbjct: 1 LPDSVDWREKGC--VTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCST 58
Query: 185 --HGNLNCNGGNIDVAFEY-VKQYGLESQADYPYRNKENITFRCTYE-KEKAKVFVQDTW 240
+GN CNGG + AF+Y + G++S A YPY+ + +C Y+ K +A + T
Sbjct: 59 EKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYRAATCRKYTE 115
Query: 241 VTSGVDHMMH--LLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEK 298
+ G + ++ + GP+ V ++ R + + +C ++H V +VGYG+
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT-QNVNHGVLVVGYGDL 174
Query: 299 NGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESY 334
NG W+V+NSWG + GY ++ R N CGI S+
Sbjct: 175 NGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASF 211
>pdb|1MS6|A Chain A, Dipeptide Nitrile Inhibitor Bound To Cathepsin S.
pdb|2R9M|A Chain A, Cathepsin S Complexed With Compound 15
pdb|2R9M|B Chain B, Cathepsin S Complexed With Compound 15
pdb|2R9N|A Chain A, Cathepsin S Complexed With Compound 26
pdb|2R9N|B Chain B, Cathepsin S Complexed With Compound 26
pdb|2R9O|A Chain A, Cathepsin S Complexed With Compound 8
pdb|2R9O|B Chain B, Cathepsin S Complexed With Compound 8
Length = 222
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/217 (33%), Positives = 115/217 (52%), Gaps = 14/217 (6%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD- 184
LP S+DWR+ + V+ QG CG+CWAF+ LE+Q+ L L LS LV+C
Sbjct: 1 LPDSVDWREKGC--VTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCST 58
Query: 185 --HGNLNCNGGNIDVAFEY-VKQYGLESQADYPYRNKENITFRCTYE-KEKAKVFVQDTW 240
+GN CNGG + AF+Y + G++S A YPY+ + +C Y+ K +A + T
Sbjct: 59 EKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYRAATCSKYTE 115
Query: 241 VTSGVDHMMH--LLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEK 298
+ G + ++ + GP+ V ++ R + + +C ++H V +VGYG+
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT-QNVNHGVLVVGYGDL 174
Query: 299 NGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESY 334
NG W+V+NSWG + GY ++ R N CGI S+
Sbjct: 175 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASF 211
>pdb|3H7D|A Chain A, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
pdb|3H7D|E Chain E, The Crystal Structure Of The Cathepsin K Variant M5 In
Compl Chondroitin-4-Sulfate
Length = 215
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 114/214 (53%), Gaps = 10/214 (4%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHG 186
P S+D+R+ + PV++QG+CGSCWAF++ LE Q+ L LS LV+C
Sbjct: 2 PDSVDYREKGY--VTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE 59
Query: 187 NLNCNGGNIDVAFEYV-KQYGLESQADYPYRNK-ENITFRCTYEKEKAKVFVQDTWVTSG 244
N C GG + AF+YV K G++S+ YPY + E+ + T + K + + + + G
Sbjct: 60 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYRE---IPEG 116
Query: 245 VDHMMH--LLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGIL 302
+ + + + GP+ V ++ L + D +CN L+HAV VGYGE G
Sbjct: 117 NEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGESKGNK 176
Query: 303 TWIVRNSWGDIGPDHGYFQIERGA-NACGIESYA 335
WI++NSWG+ GY ++ R NACGI + A
Sbjct: 177 HWIIKNSWGENWGMGGYIKMARNKNNACGIANLA 210
>pdb|2P7U|A Chain A, The Crystal Structure Of Rhodesain, The Major Cysteine
Protease Of T. Brucei Rhodesiense, Bound To Inhibitor
K777
pdb|2P86|A Chain A, The High Resolution Crystal Structure Of Rohedsain, The
Major Cathepsin L Protease From T. Brucei Rhodesiense,
Bound To Inhibitor K11002
Length = 215
Score = 114 bits (286), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 106/209 (50%), Gaps = 13/209 (6%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHG 186
P ++DWR+ + PV+ QG+CGSCWAF+T +E Q + L LS+ LV CD
Sbjct: 2 PAAVDWREKGA--VTPVKDQGQCGSCWAFSTIGNIEGQWQVAGNPLVSLSEQMLVSCDTI 59
Query: 187 NLNCNGGNIDVAFEYVKQY---GLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTS 243
+ C GG +D AF ++ + ++A YPY + +C + + D V
Sbjct: 60 DFGCGGGLMDNAFNWIVNSNGGNVFTEASYPYVSGNGEQPQCQMNGHEIGAAITDH-VDL 118
Query: 244 GVDH---MMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNG 300
D +L ++GP+ + ++ Y+G + +C +LDH V +VGY + +
Sbjct: 119 PQDEDAIAAYLAENGPLAIAVDATSFMDYNGGILT----SCTSEQLDHGVLLVGYNDASN 174
Query: 301 ILTWIVRNSWGDIGPDHGYFQIERGANAC 329
WI++NSW ++ + GY +IE+G N C
Sbjct: 175 PPYWIIKNSWSNMWGEDGYIRIEKGTNQC 203
>pdb|3H6S|A Chain A, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|B Chain B, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|C Chain C, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3H6S|D Chain D, Strucure Of Clitocypin - Cathepsin V Complex
pdb|3KFQ|A Chain A, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|B Chain B, Unreduced Cathepsin V In Complex With Stefin A
Length = 221
Score = 114 bits (285), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 114/230 (49%), Gaps = 24/230 (10%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD- 184
LPKS+DWR K + PV++Q +CGS WAF+ T LE Q+ L LS+ LV+C
Sbjct: 1 LPKSVDWR--KKGYVTPVKNQKQCGSXWAFSATGALEGQMFRKTGKLVSLSEQNLVDCSR 58
Query: 185 -HGNLNCNGGNIDVAFEYVKQY-GLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVT 242
GN CNGG + AF+YVK+ GL+S+ YPY + I C Y E + QDT T
Sbjct: 59 PQGNQGCNGGFMARAFQYVKENGGLDSEESYPYVAVDEI---CKYRPENS--VAQDTGFT 113
Query: 243 SGVDH-----MMHLLQSGPIGVYLN--HRLIESYDGNPIRRNDWACNPHKLDHAVAIVGY 295
M + GPI V ++ H + Y D C+ LDH V +VGY
Sbjct: 114 VVAPGKEKALMKAVATVGPISVAMDAGHSSFQFYKSGIYFEPD--CSSKNLDHGVLVVGY 171
Query: 296 G----EKNGILTWIVRNSWGDIGPDHGYFQIERGANA-CGIESYAYLASV 340
G + W+V+NSWG +GY +I + N CGI + A +V
Sbjct: 172 GFEGANSDNSKYWLVKNSWGPEWGSNGYVKIAKDKNNHCGIATAASYPNV 221
>pdb|2FYE|A Chain A, Mutant Human Cathepsin S With Irreversible Inhibitor Cra-
14013
Length = 217
Score = 114 bits (285), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 14/217 (6%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD- 184
LP S+DWR+ + V+ QG CG+CWAF+ LE+Q+ L L LS LV+C
Sbjct: 1 LPDSVDWREKGC--VTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCST 58
Query: 185 --HGNLNCNGGNIDVAFEY-VKQYGLESQADYPYRNKENITFRCTYEKE-KAKVFVQDTW 240
+GN CNGG + AF+Y + G++S A YPY+ + +C Y+ +A + T
Sbjct: 59 KKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSAYRAATCRKYTE 115
Query: 241 VTSGVDHMMH--LLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEK 298
+ G + ++ + GP+ V ++ R + + +C ++H V +VGYG+
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT-QNVNHGVLVVGYGDL 174
Query: 299 NGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESY 334
NG W+V+NSWG + GY ++ R N CGI S+
Sbjct: 175 NGKEYWLVKNSWGHNFGEKGYIRMARNKGNHCGIASF 211
>pdb|1U9V|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abe854
pdb|1U9W|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abi491
pdb|1U9X|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor Nvp-Abj688
pdb|2R6N|A Chain A, Crystal Structure Of A Pyrrolopyrimidine Inhibitor In
Complex With Human Cathepsin K
Length = 217
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 75/217 (34%), Positives = 115/217 (52%), Gaps = 10/217 (4%)
Query: 124 GPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVEC 183
G P S+D+R K + PV++QG+CGSCWAF++ LE Q+ L LS LV+C
Sbjct: 1 GRAPDSVDYR--KKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDC 58
Query: 184 DHGNLNCNGGNIDVAFEYV-KQYGLESQADYPYRNK-ENITFRCTYEKEKAKVFVQDTWV 241
N C GG + AF+YV K G++S+ YPY + E+ + T + K + + + +
Sbjct: 59 VSENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYRE---I 115
Query: 242 TSGVDHMMH--LLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKN 299
G + + + + GP+ V ++ L + D +CN L+HAV VGYG +
Sbjct: 116 PEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQK 175
Query: 300 GILTWIVRNSWGDIGPDHGYFQIERGA-NACGIESYA 335
G WI++NSWG+ + GY + R NACGI + A
Sbjct: 176 GNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLA 212
>pdb|3HWN|A Chain A, Cathepsin L With Az13010160
pdb|3HWN|B Chain B, Cathepsin L With Az13010160
pdb|3HWN|C Chain C, Cathepsin L With Az13010160
pdb|3HWN|D Chain D, Cathepsin L With Az13010160
Length = 258
Score = 113 bits (283), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 113/225 (50%), Gaps = 17/225 (7%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD-- 184
P+S+DWR+ + PV++QG+CGSCWAF+ T LE Q+ L LS+ LV+C
Sbjct: 40 PRSVDWREKGY--VTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 97
Query: 185 HGNLNCNGGNIDVAFEYVK-QYGLESQADYPYR-NKENITFRCTYEKEKAKVFVQDTWVT 242
GN CNGG +D AF+YV+ GL+S+ YPY +E+ + Y FV
Sbjct: 98 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPKQE 157
Query: 243 SGVDHMMHLLQSGPIGVYLN--HRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYG---- 296
+ M + GPI V ++ H Y D C+ +DH V +VGYG
Sbjct: 158 KAL--MKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFEST 213
Query: 297 EKNGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESYAYLASV 340
E + W+V+NSWG+ GY ++ + N CGI S A +V
Sbjct: 214 ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 258
>pdb|1CJL|A Chain A, Crystal Structure Of A Cysteine Protease Proform
Length = 312
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 83/245 (33%), Positives = 119/245 (48%), Gaps = 17/245 (6%)
Query: 107 LEADRERVKKFLNERKKGPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVA 166
L+ + R K E P+S+DWR+ + PV++QG+CGS WAF+ T LE Q+
Sbjct: 74 LQNRKPRKGKVFQEPLFYEAPRSVDWREKGY--VTPVKNQGQCGSSWAFSATGALEGQMF 131
Query: 167 LLKKTLYPLSKSQLVECD--HGNLNCNGGNIDVAFEYVK-QYGLESQADYPYR-NKENIT 222
L LS+ LV+C GN CNGG +D AF+YV+ GL+S+ YPY +E+
Sbjct: 132 RKTGRLISLSEQNLVDCSGPEGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCK 191
Query: 223 FRCTYEKEKAKVFVQDTWVTSGVDHMMHLLQSGPIGVYLN--HRLIESYDGNPIRRNDWA 280
+ Y FV + M + GPI V ++ H Y D
Sbjct: 192 YNPKYSVANDAGFVDIPKQEKAL--MKAVATVGPISVAIDAGHESFLFYKEGIYFEPD-- 247
Query: 281 CNPHKLDHAVAIVGYG----EKNGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESYA 335
C+ +DH V +VGYG E +G W+V+NSWG+ GY ++ + N CGI S A
Sbjct: 248 CSSEDMDHGVLVVGYGFESTESDGNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAA 307
Query: 336 YLASV 340
+V
Sbjct: 308 SYPTV 312
>pdb|1SNK|A Chain A, Cathepsin K Complexed With Carbamate Derivatized
Norleucine Aldehyde
Length = 214
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 114/214 (53%), Gaps = 10/214 (4%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHG 186
P S+D+R K + PV++QG+CGSCWAF++ LE Q+ L LS LV+C
Sbjct: 1 PDSVDYR--KKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE 58
Query: 187 NLNCNGGNIDVAFEYV-KQYGLESQADYPYRNK-ENITFRCTYEKEKAKVFVQDTWVTSG 244
N C GG + AF+YV K G++S+ YPY + E+ + T + K + + + + G
Sbjct: 59 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYRE---IPEG 115
Query: 245 VDHMMH--LLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGIL 302
+ + + + GP+ V ++ L + D +CN L+HAV VGYG + G
Sbjct: 116 NEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNK 175
Query: 303 TWIVRNSWGDIGPDHGYFQIERGA-NACGIESYA 335
WI++NSWG+ + GY + R NACGI + A
Sbjct: 176 HWIIKNSWGENWGNKGYILMARNKNNACGIANLA 209
>pdb|1MEM|A Chain A, Crystal Structure Of Cathepsin K Complexed With A Potent
Vinyl Sulfone Inhibitor
pdb|1NL6|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NL6|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1NLJ|B Chain B, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Azepanone Inhibitor
pdb|1Q6K|A Chain A, Cathepsin K Complexed With T-butyl(1s)-1-cyclohexyl-2-
Oxoethylcarbamate
pdb|1TU6|A Chain A, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1TU6|B Chain B, Cathepsin K Complexed With A Ketoamide Inhibitor
pdb|1YK7|A Chain A, Cathepsin K Complexed With A Cyanopyrrolidine Inhibitor
pdb|1YK8|A Chain A, Cathepsin K Complexed With A Cyanamide-Based Inhibitor
pdb|1YT7|A Chain A, Cathepsin K Complexed With A Constrained Ketoamide
Inhibitor
pdb|2BDL|A Chain A, Cathepsin K Complexed With A Pyrrolidine Ketoamide-Based
Inhibitor
pdb|2ATO|A Chain A, Crystal Structure Of Human Cathepsin K In Complex With
Myocrisin
pdb|2AUX|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2AUZ|A Chain A, Cathepsin K Complexed With A Semicarbazone Inhibitor
pdb|2FTD|A Chain A, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|2FTD|B Chain B, Crystal Structure Of Cathepsin K Complexed With 7-Methyl-
Substituted Azepan-3-One Compound
pdb|1ATK|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With The Covalent Inhibitor E-64
pdb|1AU0|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Symmetric Diacylaminomethyl
Ketone Inhibitor
pdb|1AU2|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Propanone Inhibitor
pdb|1AU3|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AU4|A Chain A, Crystal Structure Of The Cysteine Protease Human Cathepsin
K In Complex With A Covalent Pyrrolidinone Inhibitor
pdb|1AYU|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Symmetric Biscarbohydrazide
Inhibitor
pdb|1AYV|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Thiazolhydrazide Inhibitor
pdb|1AYW|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent
Benzyloxybenzoylcarbohydrazide Inhibitor
pdb|1BGO|A Chain A, Crystal Structure Of Cysteine Protease Human Cathepsin K
In Complex With A Covalent Peptidomimetic Inhibitor
pdb|3C9E|A Chain A, Crystal Structure Of The Cathepsin K : Chondroitin Sulfate
Complex.
pdb|3KW9|A Chain A, X-Ray Structure Of Cathepsin K Covalently Bound To A
Triazine Ligand
pdb|3KWZ|A Chain A, Cathepsin K In Complex With A Non-Selective 2-Cyano-
Pyrimidine Inhibitor
pdb|3KX1|A Chain A, Cathepsin K In Complex With A Selective 2-Cyano-Pyrimidine
Inhibitor
pdb|3KWB|X Chain X, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3KWB|Y Chain Y, Structure Of Catk Covalently Bound To A Dioxo-Triazine
Inhibitor
pdb|3O1G|A Chain A, Cathepsin K Covalently Bound To A 2-Cyano Pyrimidine
Inhibitor With A Benzyl P3 Group.
pdb|3O0U|A Chain A, Cathepsin K Covalently Bound To A Cyano-Pyrimidine
Inhibitor With Improved Selectivity Over Herg
pdb|4DMX|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|A Chain A, Cathepsin K Inhibitor
pdb|4DMY|B Chain B, Cathepsin K Inhibitor
Length = 215
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/214 (34%), Positives = 114/214 (53%), Gaps = 10/214 (4%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHG 186
P S+D+R K + PV++QG+CGSCWAF++ LE Q+ L LS LV+C
Sbjct: 2 PDSVDYR--KKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE 59
Query: 187 NLNCNGGNIDVAFEYV-KQYGLESQADYPYRNK-ENITFRCTYEKEKAKVFVQDTWVTSG 244
N C GG + AF+YV K G++S+ YPY + E+ + T + K + + + + G
Sbjct: 60 NDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYRE---IPEG 116
Query: 245 VDHMMH--LLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGIL 302
+ + + + GP+ V ++ L + D +CN L+HAV VGYG + G
Sbjct: 117 NEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNK 176
Query: 303 TWIVRNSWGDIGPDHGYFQIERGA-NACGIESYA 335
WI++NSWG+ + GY + R NACGI + A
Sbjct: 177 HWIIKNSWGENWGNKGYILMARNKNNACGIANLA 210
>pdb|3OF8|A Chain A, Structural Basis For Reversible And Irreversible
Inhibition Of Human Cathepsin L By Their Respective
Dipeptidyl Glyoxal And Diazomethylketone Inhibitors
pdb|3OF9|A Chain A, Structural Basis For Irreversible Inhibition Of Human
Cathepsin L By A Diazomethylketone Inhibitor
Length = 221
Score = 113 bits (282), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 113/225 (50%), Gaps = 17/225 (7%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD-- 184
P+S+DWR+ + PV++QG+CGSCWAF+ T LE Q+ L LS+ LV+C
Sbjct: 3 PRSVDWREKGY--VTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 185 HGNLNCNGGNIDVAFEYVK-QYGLESQADYPYR-NKENITFRCTYEKEKAKVFVQDTWVT 242
GN CNGG +D AF+YV+ GL+S+ YPY +E+ + Y FV
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQE 120
Query: 243 SGVDHMMHLLQSGPIGVYLN--HRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYG---- 296
+ M + GPI V ++ H Y D C+ +DH V +VGYG
Sbjct: 121 KAL--MKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFEST 176
Query: 297 EKNGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESYAYLASV 340
E + W+V+NSWG+ GY ++ + N CGI S A +V
Sbjct: 177 ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 221
>pdb|3HHA|A Chain A, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|B Chain B, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|C Chain C, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|3HHA|D Chain D, Crystal Structure Of Cathepsin L In Complex With
Az12878478
pdb|2XU1|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|B Chain B, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|C Chain C, Cathepsin L With A Nitrile Inhibitor
pdb|2XU1|D Chain D, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 113/225 (50%), Gaps = 17/225 (7%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD-- 184
P+S+DWR+ + PV++QG+CGSCWAF+ T LE Q+ L LS+ LV+C
Sbjct: 2 PRSVDWREKGY--VTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 59
Query: 185 HGNLNCNGGNIDVAFEYVK-QYGLESQADYPYR-NKENITFRCTYEKEKAKVFVQDTWVT 242
GN CNGG +D AF+YV+ GL+S+ YPY +E+ + Y FV
Sbjct: 60 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPKQE 119
Query: 243 SGVDHMMHLLQSGPIGVYLN--HRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYG---- 296
+ M + GPI V ++ H Y D C+ +DH V +VGYG
Sbjct: 120 KAL--MKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFEST 175
Query: 297 EKNGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESYAYLASV 340
E + W+V+NSWG+ GY ++ + N CGI S A +V
Sbjct: 176 ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
>pdb|3H89|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H89|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 4)
pdb|3H8B|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|C Chain C, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|D Chain D, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|E Chain E, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|3H8B|F Chain F, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors(Compound 9)
pdb|2XU3|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU4|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2XU5|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ2|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ8|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJ9|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJB|A Chain A, Cathepsin L With A Nitrile Inhibitor
pdb|2YJC|A Chain A, Cathepsin L With A Nitrile Inhibitor
Length = 220
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 79/225 (35%), Positives = 113/225 (50%), Gaps = 17/225 (7%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD-- 184
P+S+DWR+ + PV++QG+CGSCWAF+ T LE Q+ L LS+ LV+C
Sbjct: 2 PRSVDWREKGY--VTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 59
Query: 185 HGNLNCNGGNIDVAFEYVK-QYGLESQADYPYR-NKENITFRCTYEKEKAKVFVQDTWVT 242
GN CNGG +D AF+YV+ GL+S+ YPY +E+ + Y FV
Sbjct: 60 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQE 119
Query: 243 SGVDHMMHLLQSGPIGVYLN--HRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYG---- 296
+ M + GPI V ++ H Y D C+ +DH V +VGYG
Sbjct: 120 KAL--MKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFEST 175
Query: 297 EKNGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESYAYLASV 340
E + W+V+NSWG+ GY ++ + N CGI S A +V
Sbjct: 176 ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
>pdb|1GLO|A Chain A, Crystal Structure Of Cys25ser Mutant Of Human Cathepsin S
Length = 217
Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 14/217 (6%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD- 184
LP S+DWR+ + V+ QG CG+ WAF+ LE+Q+ L L LS LV+C
Sbjct: 1 LPDSVDWREKGC--VTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCST 58
Query: 185 --HGNLNCNGGNIDVAFEYV-KQYGLESQADYPYRNKENITFRCTYE-KEKAKVFVQDTW 240
+GN CNGG + AF+Y+ G++S A YPY+ + +C Y+ K +A + T
Sbjct: 59 EKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKA---MDLKCQYDSKYRAATCSKYTE 115
Query: 241 VTSGVDHMMH--LLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEK 298
+ G + ++ + GP+ V ++ R + + +C ++H V +VGYG+
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT-QNVNHGVLVVGYGDL 174
Query: 299 NGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESY 334
NG W+V+NSWG + GY ++ R N CGI S+
Sbjct: 175 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASF 211
>pdb|3KWN|A Chain A, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3KWN|B Chain B, Cathepsin S In Complex With Thioether Acetamide P3
Inhibitor
pdb|3MPF|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPF|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 219
Score = 112 bits (280), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 14/217 (6%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD- 184
LP S+DWR+ + V+ QG CG+ WAF+ LE+Q+ L L LS LV+C
Sbjct: 1 LPDSVDWREKGC--VTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCST 58
Query: 185 --HGNLNCNGGNIDVAFEYV-KQYGLESQADYPYRNKENITFRCTYE-KEKAKVFVQDTW 240
+GN CNGG + AF+Y+ G++S A YPY+ + +C Y+ K +A + T
Sbjct: 59 EKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYRAATCSKYTE 115
Query: 241 VTSGVDHMMH--LLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEK 298
+ G + ++ + GP+ V ++ R + + +C ++H V +VGYG+
Sbjct: 116 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT-QNVNHGVLVVGYGDL 174
Query: 299 NGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESY 334
NG W+V+NSWG + GY ++ R N CGI S+
Sbjct: 175 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASF 211
>pdb|2C0Y|A Chain A, The Crystal Structure Of A Cys25ala Mutant Of Human
Procathepsin S
Length = 315
Score = 112 bits (279), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 14/217 (6%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD- 184
LP S+DWR+ + V+ QG CG+ WAF+ LE+Q+ L L LS LV+C
Sbjct: 99 LPDSVDWREKGC--VTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCST 156
Query: 185 --HGNLNCNGGNIDVAFEYV-KQYGLESQADYPYRNKENITFRCTYE-KEKAKVFVQDTW 240
+GN CNGG + AF+Y+ G++S A YPY+ + +C Y+ K +A + T
Sbjct: 157 EKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYRAATCSKYTE 213
Query: 241 VTSGVDHMMH--LLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEK 298
+ G + ++ + GP+ V ++ R + + +C ++H V +VGYG+
Sbjct: 214 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT-QNVNHGVLVVGYGDL 272
Query: 299 NGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESY 334
NG W+V+NSWG + GY ++ R N CGI S+
Sbjct: 273 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASF 309
>pdb|3IEJ|A Chain A, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
pdb|3IEJ|B Chain B, Pyrazole-Based Cathepsin S Inhibitors With Arylalkynes As
P1 Binding Elements
Length = 222
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 14/217 (6%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD- 184
LP S+DWR+ + V+ QG CG+ WAF+ LE+Q+ L L LS LV+C
Sbjct: 3 LPDSVDWREKGC--VTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCST 60
Query: 185 --HGNLNCNGGNIDVAFEYV-KQYGLESQADYPYRNKENITFRCTYE-KEKAKVFVQDTW 240
+GN CNGG + AF+Y+ G++S A YPY+ + +C Y+ K +A + T
Sbjct: 61 EKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYRAATCSKYTE 117
Query: 241 VTSGVDHMMH--LLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEK 298
+ G + ++ + GP+ V ++ R + + +C ++H V +VGYG+
Sbjct: 118 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT-QNVNHGVLVVGYGDL 176
Query: 299 NGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESY 334
NG W+V+NSWG + GY ++ R N CGI S+
Sbjct: 177 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASF 213
>pdb|3MPE|A Chain A, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
pdb|3MPE|B Chain B, Crystal Structure Of Human Cathepsin-S C25s Mutant With
Bound Drug
Length = 220
Score = 112 bits (279), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 72/217 (33%), Positives = 114/217 (52%), Gaps = 14/217 (6%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD- 184
LP S+DWR+ + V+ QG CG+ WAF+ LE+Q+ L L LS LV+C
Sbjct: 2 LPDSVDWREKGC--VTEVKYQGSCGASWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCST 59
Query: 185 --HGNLNCNGGNIDVAFEYV-KQYGLESQADYPYRNKENITFRCTYE-KEKAKVFVQDTW 240
+GN CNGG + AF+Y+ G++S A YPY+ + +C Y+ K +A + T
Sbjct: 60 EKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYRAATCSKYTE 116
Query: 241 VTSGVDHMMH--LLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEK 298
+ G + ++ + GP+ V ++ R + + +C ++H V +VGYG+
Sbjct: 117 LPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYYEPSCT-QNVNHGVLVVGYGDL 175
Query: 299 NGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESY 334
NG W+V+NSWG + GY ++ R N CGI S+
Sbjct: 176 NGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASF 212
>pdb|3OVZ|A Chain A, Cathepsin K In Complex With A Covalent Inhibitor With A
Ketoamide Warhead
Length = 213
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 73/212 (34%), Positives = 113/212 (53%), Gaps = 10/212 (4%)
Query: 129 SLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNL 188
S+D+R K + PV++QG+CGSCWAF++ LE Q+ L LS LV+C N
Sbjct: 2 SVDYR--KKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSEND 59
Query: 189 NCNGGNIDVAFEYV-KQYGLESQADYPYRNK-ENITFRCTYEKEKAKVFVQDTWVTSGVD 246
C GG + AF+YV K G++S+ YPY + E+ + T + K + + + + G +
Sbjct: 60 GCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEESCMYNPTGKAAKCRGYRE---IPEGNE 116
Query: 247 HMMH--LLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTW 304
+ + + GP+ V ++ L + D +CN L+HAV VGYG + G W
Sbjct: 117 KALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDESCNSDNLNHAVLAVGYGIQKGNKHW 176
Query: 305 IVRNSWGDIGPDHGYFQIERGA-NACGIESYA 335
I++NSWG+ + GY + R NACGI + A
Sbjct: 177 IIKNSWGENWGNKGYILMARNKNNACGIANLA 208
>pdb|1CS8|A Chain A, Crystal Structure Of Procathepsin L
Length = 316
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 112/225 (49%), Gaps = 17/225 (7%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD-- 184
P+S+DWR+ + PV++QG+CGS WAF+ T LE Q+ L LS+ LV+C
Sbjct: 98 PRSVDWREKGY--VTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 155
Query: 185 HGNLNCNGGNIDVAFEYVKQY-GLESQADYPYR-NKENITFRCTYEKEKAKVFVQDTWVT 242
GN CNGG +D AF+YV+ GL+S+ YPY +E+ + Y FV
Sbjct: 156 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPKQE 215
Query: 243 SGVDHMMHLLQSGPIGVYLN--HRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYG---- 296
+ M + GPI V ++ H Y D C+ +DH V +VGYG
Sbjct: 216 KAL--MKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFEST 271
Query: 297 EKNGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESYAYLASV 340
E + W+V+NSWG+ GY ++ + N CGI S A +V
Sbjct: 272 ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 316
>pdb|2F7D|A Chain A, A Mutant Rabbit Cathepsin K With A Nitrile Inhibitor
Length = 215
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 113/214 (52%), Gaps = 10/214 (4%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHG 186
P S+D+R K + PV++QG+CGSCWAF++ LE Q+ L LS LV+C
Sbjct: 2 PDSIDYR--KKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSE 59
Query: 187 NLNCNGGNIDVAFEYV-KQYGLESQADYPYRNK-ENITFRCTYEKEKAKVFVQDTWVTSG 244
N C GG + AF+YV + G++S+ YPY + E+ + T + K + + + + G
Sbjct: 60 NDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYRE---IPEG 116
Query: 245 VDHMMH--LLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGIL 302
+ + + + GP+ V ++ L + D C+ L+HAV VGYG + G
Sbjct: 117 NEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYDENCSSDNLNHAVLAVGYGIQKGNK 176
Query: 303 TWIVRNSWGDIGPDHGYFQIERGA-NACGIESYA 335
WI++NSWG+ + GY + R NACGI + A
Sbjct: 177 HWIIKNSWGESWGNKGYILMARNKNNACGIANLA 210
>pdb|2NQD|B Chain B, Crystal Structure Of Cysteine Protease Inhibitor,
Chagasin, In Complex With Human Cathepsin L
Length = 221
Score = 109 bits (273), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 112/225 (49%), Gaps = 17/225 (7%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD-- 184
P+S+DWR+ + PV++QG+CGS WAF+ T LE Q+ L LS+ LV+C
Sbjct: 3 PRSVDWREKGY--VTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 60
Query: 185 HGNLNCNGGNIDVAFEYVK-QYGLESQADYPYR-NKENITFRCTYEKEKAKVFVQDTWVT 242
GN CNGG +D AF+YV+ GL+S+ YPY +E+ + Y FV
Sbjct: 61 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQE 120
Query: 243 SGVDHMMHLLQSGPIGVYLN--HRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYG---- 296
+ M + GPI V ++ H Y D C+ +DH V +VGYG
Sbjct: 121 KAL--MKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFEST 176
Query: 297 EKNGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESYAYLASV 340
E + W+V+NSWG+ GY ++ + N CGI S A +V
Sbjct: 177 ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 221
>pdb|3IV2|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3IV2|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant
pdb|3K24|A Chain A, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
pdb|3K24|B Chain B, Crystal Structure Of Mature Apo-Cathepsin L C25a Mutant In
Complex With Gln-Leu-Ala Peptide
Length = 220
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 112/225 (49%), Gaps = 17/225 (7%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD-- 184
P+S+DWR+ + PV++QG+CGS WAF+ T LE Q+ L LS+ LV+C
Sbjct: 2 PRSVDWREKGY--VTPVKNQGQCGSAWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 59
Query: 185 HGNLNCNGGNIDVAFEYVK-QYGLESQADYPYR-NKENITFRCTYEKEKAKVFVQDTWVT 242
GN CNGG +D AF+YV+ GL+S+ YPY +E+ + Y FV
Sbjct: 60 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQE 119
Query: 243 SGVDHMMHLLQSGPIGVYLN--HRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYG---- 296
+ M + GPI V ++ H Y D C+ +DH V +VGYG
Sbjct: 120 KAL--MKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFEST 175
Query: 297 EKNGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESYAYLASV 340
E + W+V+NSWG+ GY ++ + N CGI S A +V
Sbjct: 176 ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
>pdb|3TNX|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3TNX|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 2.6 Angstroem Resolution
pdb|3USV|A Chain A, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
pdb|3USV|C Chain C, Structure Of The Precursor Of A Thermostable Variant Of
Papain At 3.8 A Resolution From A Crystal Soaked At Ph 4
Length = 363
Score = 108 bits (271), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 93/321 (28%), Positives = 153/321 (47%), Gaps = 45/321 (14%)
Query: 38 KQVDAFKTYIVKWNRTYTDDNEIKTRFEYFKQDGKETDE--------YYGTSGSSDRSPQ 89
+ + F+++++K N+ Y + +E RFE FK + K DE + G + +D S
Sbjct: 61 RLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSND 120
Query: 90 EILQRTGLRLTGKEKERLEADRERVKKFLNERKKGPLPKSLDWRQSKVKVLNPVESQGRC 149
E ++ TG ++ LN+ +P+ +DWRQ + PV++QG C
Sbjct: 121 EFKEK----YTGSIAGNYTTTELSYEEVLNDGDVN-IPEYVDWRQKGA--VTPVKNQGSC 173
Query: 150 GSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVKQYGLES 209
GS WAF+ + +ES + + L S+ +L++CD + CNGG A + V QYG+
Sbjct: 174 GSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHY 233
Query: 210 QADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGVDH--------MMHLLQSGPIGVYL 261
+ YPY E + C +EK + T GV +++ + + P+ V L
Sbjct: 234 RNTYPY---EGVQRYCR-SREKGPYAAK----TDGVRQVQPYNEGALLYSIANQPVSVVL 285
Query: 262 NH--RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGY 319
+ + Y G C +K+DHAVA VGYG N IL +RNSWG ++GY
Sbjct: 286 EAAGKDFQLYRGGIFVG---PCG-NKVDHAVAAVGYG-PNYIL---IRNSWGTGWGENGY 337
Query: 320 FQIERGA----NACGIESYAY 336
+I+RG CG+ + ++
Sbjct: 338 IRIKRGTGNSYGVCGLYTSSF 358
>pdb|1EWP|A Chain A, Cruzain Bound To Mor-Leu-Hpq
pdb|1F29|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|B Chain B, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F29|C Chain C, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (I)
pdb|1F2A|A Chain A, Crystal Structure Analysis Of Cruzain Bound To A Vinyl
Sulfone Derived Inhibitor (Ii)
pdb|1F2B|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Iii)
pdb|1F2C|A Chain A, Crystal Structure Analysis Of Cryzain Bound To Vinyl
Sulfone Derived Inhibitor (Iv)
pdb|1ME3|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain Non-
Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(Ii)
pdb|1ME4|A Chain A, High Resolution Crystal Structure Analysis Of Cruzain
Non-Covalently Bound To A Hydroxymethyl Ketone Inhibitor
(I)
pdb|1EWL|A Chain A, Crystal Structure Of Cruzain Bound To Wrr-99
pdb|1EWM|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-112
pdb|1EWO|A Chain A, The Cysteine Protease Cruzain Bound To Wrr-204
pdb|1U9Q|X Chain X, Crystal Structure Of Cruzain Bound To An Alpha-Ketoester
pdb|2AIM|A Chain A, Cruzain Inhibited With
Benzoyl-Arginine-Alanine-Fluoromethylketone
pdb|2OZ2|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|2OZ2|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (K11777)
pdb|3I06|A Chain A, Crystal Structure Of Cruzain Covalently Bound To A Purine
Nitrile
pdb|3KKU|A Chain A, Cruzain In Complex With A Non-Covalent Ligand
pdb|3LXS|A Chain A, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
pdb|3LXS|C Chain C, Crystal Structure Analysis Of Cruzain Bound To Vinyl
Sulfone Derived Inhibitor (Wrr483)
Length = 215
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 21/224 (9%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHG 186
P ++DWR + V+ QG+CGSCWAF+ +E Q L L LS+ LV CD
Sbjct: 2 PAAVDWRARGA--VTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT 59
Query: 187 NLNCNGGNIDVAFEYVKQY---GLESQADYPYRNKENITFRCTYEKEKAKVFV------- 236
+ C+GG ++ AFE++ Q + ++ YPY + E I+ CT +
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELP 119
Query: 237 QDTWVTSGVDHMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYG 296
QD L +GP+ V ++ +Y G + +C +LDH V +VGY
Sbjct: 120 QDE-----AQIAAWLAVNGPVAVAVDASSWMTYTGGVMT----SCVSEQLDHGVLLVGYN 170
Query: 297 EKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLASV 340
+ + WI++NSW + GY +I +G+N C ++ A A V
Sbjct: 171 DSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
>pdb|3BC3|A Chain A, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3BC3|B Chain B, Exploring Inhibitor Binding At The S Subsites Of Cathepsin
L
pdb|3H8C|A Chain A, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
pdb|3H8C|B Chain B, A Combined Crystallographic And Molecular Dynamics Study
Of Cathepsin-L Retro-Binding Inhibitors (Compound 14)
Length = 220
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 112/225 (49%), Gaps = 17/225 (7%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD-- 184
P+S+DWR+ + PV++QG+CGS WAF+ T LE Q+ L LS+ LV+C
Sbjct: 2 PRSVDWREKGY--VTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 59
Query: 185 HGNLNCNGGNIDVAFEYVK-QYGLESQADYPYR-NKENITFRCTYEKEKAKVFVQDTWVT 242
GN CNGG +D AF+YV+ GL+S+ YPY +E+ + Y FV
Sbjct: 60 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQE 119
Query: 243 SGVDHMMHLLQSGPIGVYLN--HRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYG---- 296
+ M + GPI V ++ H Y D C+ +DH V +VGYG
Sbjct: 120 KAL--MKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFEST 175
Query: 297 EKNGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESYAYLASV 340
E + W+V+NSWG+ GY ++ + N CGI S A +V
Sbjct: 176 ESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
>pdb|1CQD|A Chain A, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|B Chain B, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|C Chain C, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
pdb|1CQD|D Chain D, The 2.1 Angstrom Structure Of A Cysteine Protease With
Proline Specificity From Ginger Rhizome, Zingiber
Officinale
Length = 221
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 109/217 (50%), Gaps = 14/217 (6%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185
LP S+DWR++ V PV++QG CGSCWAF+T A +E ++ L LS+ QLV+C
Sbjct: 3 LPDSIDWRENGAVV--PVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTT 60
Query: 186 GNLNCNGGNIDVAFEY-VKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSG 244
N C GG ++ AF++ V G+ S+ YPYR ++ I T + + +
Sbjct: 61 ANHGCRGGWMNPAFQFIVNNGGINSEETYPYRGQDGIC-NSTVNAPVVSIDSYENVPSHN 119
Query: 245 VDHMMHLLQSGPIGVYLNH--RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGIL 302
+ + + P+ V ++ R + Y +CN +HA+ +VGYG +N
Sbjct: 120 EQSLQKAVANQPVSVTMDAAGRDFQLYRSGIFTG---SCN-ISANHALTVVGYGTENDKD 175
Query: 303 TWIVRNSWGDIGPDHGYFQIERGA----NACGIESYA 335
WIV+NSWG + GY + ER CGI +A
Sbjct: 176 FWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFA 212
>pdb|3KSE|A Chain A, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|B Chain B, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|C Chain C, Unreduced Cathepsin L In Complex With Stefin A
Length = 220
Score = 108 bits (270), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 78/225 (34%), Positives = 112/225 (49%), Gaps = 17/225 (7%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD-- 184
P+S+DWR+ + PV++QG+CGS WAF+ T LE Q+ L LS+ LV+C
Sbjct: 2 PRSVDWREKGY--VTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 59
Query: 185 HGNLNCNGGNIDVAFEYVK-QYGLESQADYPYR-NKENITFRCTYEKEKAKVFVQDTWVT 242
GN CNGG +D AF+YV+ GL+S+ YPY +E+ + Y FV
Sbjct: 60 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDAGFVDIPKQE 119
Query: 243 SGVDHMMHLLQSGPIGVYLN--HRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYG---- 296
+ M + GPI V ++ H Y D C+ +DH V +VGYG
Sbjct: 120 KAL--MKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYGFEST 175
Query: 297 EKNGILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESYAYLASV 340
E + W+V+NSWG+ GY ++ + N CGI S A +V
Sbjct: 176 ESDDNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220
>pdb|1AIM|A Chain A, Cruzain Inhibited By
Benzoyl-Tyrosine-Alanine-Fluoromethylketone
Length = 215
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 68/224 (30%), Positives = 106/224 (47%), Gaps = 21/224 (9%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHG 186
P ++DWR + V+ QG+CGSCWAF+ +E Q L L LS+ LV CD
Sbjct: 2 PAAVDWRARGA--VTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKT 59
Query: 187 NLNCNGGNIDVAFEYVKQY---GLESQADYPYRNKENITFRCTYEKEKAKVFV------- 236
+ C+GG ++ AFE++ Q + ++ YPY + E I+ CT +
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELP 119
Query: 237 QDTWVTSGVDHMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYG 296
QD L +GP+ V ++ +Y G + +C LDH V +VGY
Sbjct: 120 QDE-----AQIAAWLAVNGPVAVAVDASSWMTYTGGVMT----SCVSEALDHGVLLVGYN 170
Query: 297 EKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLASV 340
+ + WI++NSW + GY +I +G+N C ++ A A V
Sbjct: 171 DSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
>pdb|1VSN|A Chain A, Crystal Structure Of A Potent Small Molecule Inhibitor
Bound To Cathepsin K
Length = 215
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/214 (33%), Positives = 112/214 (52%), Gaps = 10/214 (4%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHG 186
P S+D+R K + PV++QG+CGSCWAF++ LE Q+ L L+ LV+C
Sbjct: 2 PDSIDYR--KKGYVTPVKNQGQCGSCWAFSSVGALEGQLKKATGALLNLAPQNLVDCVSE 59
Query: 187 NLNCNGGNIDVAFEYV-KQYGLESQADYPYRNK-ENITFRCTYEKEKAKVFVQDTWVTSG 244
N C GG + AF+YV + G++S+ YPY + E+ + T + K + + + + G
Sbjct: 60 NDGCGGGYMTNAFQYVQRNRGIDSEDAYPYVGQDESCMYNPTGKAAKCRGYRE---IPEG 116
Query: 245 VDHMMH--LLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGIL 302
+ + + GP+ V ++ L + D C+ L+HAV VGYG + G
Sbjct: 117 NEAALKRAVAAVGPVSVAIDASLTSFQFYSAGVYYDENCSSDALNHAVLAVGYGIQAGNK 176
Query: 303 TWIVRNSWGDIGPDHGYFQIERGA-NACGIESYA 335
WI++NSWG+ + GY + R NACGI + A
Sbjct: 177 HWIIKNSWGESWGNAGYILMARNKNNACGIANLA 210
>pdb|1S4V|A Chain A, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
pdb|1S4V|B Chain B, The 2.0 A Crystal Structure Of The Kdel-Tailed Cysteine
Endopeptidase Functioning In Programmed Cell Death Of
Ricinus Communis Endosperm
Length = 229
Score = 107 bits (268), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 76/218 (34%), Positives = 112/218 (51%), Gaps = 21/218 (9%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185
+P S+DWR K + V+ QG+CGSCWAF+T +E + L LS+ +LV+CD
Sbjct: 2 VPASVDWR--KKGAVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDT 59
Query: 186 G-NLNCNGGNIDVAFEYVKQY-GLESQADYPYRNKENITFRCTYEKEKAKVFVQD---TW 240
N CNGG +D AFE++KQ G+ ++A+YPY E C KE A D
Sbjct: 60 DQNQGCNGGLMDYAFEFIKQRGGITTEANYPY---EAYDGTCDVSKENAPAVSIDGHENV 116
Query: 241 VTSGVDHMMHLLQSGPIGVYLNH--RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEK 298
+ + ++ + + P+ V ++ + Y +C +LDH VAIVGYG
Sbjct: 117 PENDENALLKAVANQPVSVAIDAGGSDFQFYSEGVFTG---SCG-TELDHGVAIVGYGTT 172
Query: 299 -NGILTWIVRNSWGDIGPDHGYFQIERGAN----ACGI 331
+G W V+NSWG + GY ++ERG + CGI
Sbjct: 173 IDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGI 210
>pdb|2FO5|A Chain A, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|B Chain B, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|C Chain C, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
pdb|2FO5|D Chain D, Crystal Structure Of Recombinant Barley Cysteine
Endoprotease B Isoform 2 (Ep-B2) In Complex With
Leupeptin
Length = 262
Score = 107 bits (267), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 112/220 (50%), Gaps = 22/220 (10%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185
LP S+DWRQ + V+ QG+CGSCWAF+T +E A+ +L LS+ +L++CD
Sbjct: 4 LPPSVDWRQKGA--VTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDT 61
Query: 186 G-NLNCNGGNIDVAFEYVKQY-GLESQADYPYRNKENITFRCTYEKEKAKVFV-----QD 238
N C GG +D AFEY+K GL ++A YPYR T + + V V QD
Sbjct: 62 ADNDGCQGGLMDNAFEYIKNNGGLITEAAYPYRAARG-TCNVARAAQNSPVVVHIDGHQD 120
Query: 239 TWVTSGVDHMMHLLQSGPIGVYL--NHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYG 296
S D + + + P+ V + + + Y C +LDH VA+VGYG
Sbjct: 121 VPANSEED-LARAVANQPVSVAVEASGKAFMFYSEGVFTGE---CG-TELDHGVAVVGYG 175
Query: 297 -EKNGILTWIVRNSWGDIGPDHGYFQIERGANA----CGI 331
++G W V+NSWG + GY ++E+ + A CGI
Sbjct: 176 VAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGI 215
>pdb|3IUT|A Chain A, The Crystal Structure Of Cruzain In Complex With A
Tetrafluorophenoxymethyl Ketone Inhibitor
Length = 221
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 107/224 (47%), Gaps = 21/224 (9%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHG 186
P ++DWR + V+ QG+CGSCWAF+ +E Q L L L++ LV CD
Sbjct: 2 PAAVDWRARGA--VTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT 59
Query: 187 NLNCNGGNIDVAFEYVKQY---GLESQADYPYRNKENITFRCTYEKEKAKVFV------- 236
+ C+GG ++ AFE++ Q + ++ YPY + E I+ CT +
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELP 119
Query: 237 QDTWVTSGVDHMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYG 296
QD L +GP+ V ++ +Y G + +C +LDH V +VGY
Sbjct: 120 QDE-----AQIAAWLAVNGPVAVAVDASSWMTYTGGVMT----SCVSEQLDHGVLLVGYN 170
Query: 297 EKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLASV 340
+ + WI++NSW + GY +I +G+N C ++ A A V
Sbjct: 171 DGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
>pdb|3HD3|A Chain A, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
pdb|3HD3|B Chain B, High Resolution Crystal Structure Of Cruzain Bound To The
Vinyl Sulfone Inhibitor Smdc-256047
Length = 215
Score = 107 bits (267), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 67/224 (29%), Positives = 107/224 (47%), Gaps = 21/224 (9%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHG 186
P ++DWR + V+ QG+CGSCWAF+ +E Q L L L++ LV CD
Sbjct: 2 PAAVDWRARGA--VTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLAEQMLVSCDKT 59
Query: 187 NLNCNGGNIDVAFEYVKQY---GLESQADYPYRNKENITFRCTYEKEKAKVFV------- 236
+ C+GG ++ AFE++ Q + ++ YPY + E I+ CT +
Sbjct: 60 DSGCSGGLMNNAFEWIVQENNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITGHVELP 119
Query: 237 QDTWVTSGVDHMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYG 296
QD L +GP+ V ++ +Y G + +C +LDH V +VGY
Sbjct: 120 QDE-----AQIAAWLAVNGPVAVAVDASSWMTYTGGVMT----SCVSEQLDHGVLLVGYN 170
Query: 297 EKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLASV 340
+ + WI++NSW + GY +I +G+N C ++ A A V
Sbjct: 171 DGAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214
>pdb|3D6S|A Chain A, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|B Chain B, Crystal Structure Of Mite Allergen Der F 1
pdb|3D6S|C Chain C, Crystal Structure Of Mite Allergen Der F 1
pdb|3RVV|A Chain A, Crystal Structure Of Der F 1 Complexed With Fab 4c1
Length = 223
Score = 105 bits (263), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 74/222 (33%), Positives = 103/222 (46%), Gaps = 20/222 (9%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVEC-- 183
+P LD R ++ + P+ QG CGSCWAF+ A ES + T LS+ +LV+C
Sbjct: 11 VPSELDLR--SLRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNTSLDLSEQELVDCAS 68
Query: 184 DHGNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEK-------AKVFV 236
HG C+G I EY++Q G+ + YPY +E RC + +++
Sbjct: 69 QHG---CHGDTIPRGIEYIQQNGVVEERSYPYVAREQ---RCRRPNSQHYGISNYCQIYP 122
Query: 237 QDTWVTSGVDHMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYG 296
D H + IG+ + R + YDG I ++D P+ HAV IVGYG
Sbjct: 123 PDVKQIREALTQTHTAIAVIIGI-KDLRAFQHYDGRTIIQHDNGYQPNY--HAVNIVGYG 179
Query: 297 EKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLA 338
G WIVRNSW D GY + G N IE Y Y+
Sbjct: 180 STQGDDYWIVRNSWDTTWGDSGYGYFQAGNNLMMIEQYPYVV 221
>pdb|2B1M|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
pdb|2B1N|A Chain A, Crystal Structure Of A Papain-Fold Protein Without The
Catalytic Cysteine From Seeds Of Pachyrhizus Erosus
Length = 246
Score = 105 bits (262), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 69/221 (31%), Positives = 113/221 (51%), Gaps = 11/221 (4%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHG 186
P+S DW SK V+ V+ QG+CGS WAF+ T +E+ A+ L LS+ +L++C
Sbjct: 3 PESWDW--SKKGVITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDE 60
Query: 187 NLNCNGGNIDVAFEY-VKQYGLESQADYPYRNKEN------ITFRCTYEKEKAKVFVQDT 239
+ C G +FE+ VK G+ S+ADYPY+ ++ I + T + ++ ++
Sbjct: 61 SEGCYNGWHYQSFEWVVKHGGIASEADYPYKARDGKCKANEIQDKVTIDNYGVQILSNES 120
Query: 240 WVTSGVDHMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKN 299
+ + + PI V ++ + Y G I +P+ ++H V IVGYG ++
Sbjct: 121 TESEAESSLQSFVLEQPISVSIDAKDFHFYSGG-IYDGGNCSSPYGINHFVLIVGYGSED 179
Query: 300 GILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESYAYLAS 339
G+ WI +NSWG+ GY +I+R N G+ Y AS
Sbjct: 180 GVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFAS 220
>pdb|3BCN|A Chain A, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
pdb|3BCN|B Chain B, Crystal Structure Of A Papain-Like Cysteine Protease
Ervatamin-A Complexed With Irreversible Inhibitor E-64
Length = 209
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 109/216 (50%), Gaps = 18/216 (8%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185
LP+ +DWR + P+++QG+CGSCWAF+T +ES + L LS+ QLV+C
Sbjct: 1 LPEHVDWRAKGAVI--PLKNQGKCGSCWAFSTVTTVESINQIRTGNLISLSEQQLVDCSK 58
Query: 186 GNLNCNGGNIDVAFEY-VKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSG 244
N C GG D A++Y + G++++A+YPY+ + C K+ ++
Sbjct: 59 KNHGCKGGYFDRAYQYIIANGGIDTEANYPYKAFQG---PCRAAKKVVRIDGCKGVPQCN 115
Query: 245 VDHMMHLLQSGP--IGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGIL 302
+ + + + S P + + + + + Y G C KL+H V IVGYG+
Sbjct: 116 ENALKNAVASQPSVVAIDASSKQFQHYKGGIFTG---PCGT-KLNHGVVIVGYGKD---- 167
Query: 303 TWIVRNSWGDIGPDHGYFQIER--GANACGIESYAY 336
WIVRNSWG + GY +++R G CGI +
Sbjct: 168 YWIVRNSWGRHWGEQGYTRMKRVGGCGLCGIARLPF 203
>pdb|3P5W|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 102 bits (254), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/217 (32%), Positives = 107/217 (49%), Gaps = 20/217 (9%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD- 184
LP +DWR S V ++ QG+CGSCWAF+T A +E + L LS+ +LV+C
Sbjct: 1 LPDYVDWRSSGAVV--DIKDQGQCGSCWAFSTIAAVEGINKIATGDLISLSEQELVDCGR 58
Query: 185 -HGNLNCNGGNIDVAFEY-VKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVT 242
C+GG + F++ + G+ ++A+YPY +E +C + ++ K DT+
Sbjct: 59 TQNTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEG---QCNLDLQQEKYVSIDTYEN 115
Query: 243 SGVDHMMHL---LQSGPIGVYLNHRL--IESYDGNPIRRNDWACNPHKLDHAVAIVGYGE 297
++ L + P+ V L + Y C +DHAV IVGYG
Sbjct: 116 VPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTG---PCGT-AVDHAVTIVGYGT 171
Query: 298 KNGILTWIVRNSWGDIGPDHGYFQIER---GANACGI 331
+ GI WIV+NSWG + GY +I+R G CGI
Sbjct: 172 EGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGI 208
>pdb|2PNS|A Chain A, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PNS|B Chain B, 1.9 Angstrom Resolution Crystal Structure Of A Plant
Cysteine Protease Ervatamin-C Refinement With Cdna
Derived Amino Acid Sequence
pdb|2PRE|A Chain A, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
pdb|2PRE|B Chain B, Crystal Structure Of Plant Cysteine Protease Ervatamin-C
Complexed With Irreversible Inhibitor E-64 At 2.7 A
Resolution
Length = 208
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 72/221 (32%), Positives = 112/221 (50%), Gaps = 28/221 (12%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185
LP+ +DWR K + PV++QG+CGSCWAF+T + +ES + L LS+ QLV+C+
Sbjct: 1 LPEQIDWR--KKGAVTPVKNQGKCGSCWAFSTVSTVESINQIRTGNLISLSEQQLVDCNK 58
Query: 186 GNLNCNGGNIDVAFEY-VKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSG 244
N C GG A++Y + G++++A+YPY+ + C K+ ++ D + G
Sbjct: 59 KNHGCKGGAFVYAYQYIIDNGGIDTEANYPYK---AVQGPCRAAKKVVRI---DGY--KG 110
Query: 245 VDH-----MMHLLQSGP--IGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGE 297
V H + + S P + + + + + Y C KL+H V IVGY +
Sbjct: 111 VPHCNENALKKAVASQPSVVAIDASSKQFQHYKSGIFSG---PCGT-KLNHGVVIVGYWK 166
Query: 298 KNGILTWIVRNSWGDIGPDHGYFQIER--GANACGIESYAY 336
WIVRNSWG + GY +++R G CGI Y
Sbjct: 167 D----YWIVRNSWGRYWGEQGYIRMKRVGGCGLCGIARLPY 203
>pdb|3PDF|A Chain A, Discovery Of Novel Cyanamide-Based Inhibitors Of Cathepsin
C
Length = 441
Score = 100 bits (250), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 118/234 (50%), Gaps = 26/234 (11%)
Query: 126 LPKSLDWRQSK-VKVLNPVESQGRCGSCWAFATTAILESQVALL-KKTLYP-LSKSQLVE 182
LP S DWR + ++PV +Q CGSC++FA+ +LE+++ +L + P LS ++V
Sbjct: 207 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 266
Query: 183 CDHGNLNCNGG-NIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWV 241
C C GG +A +Y + +GL +A +PY ++ C +++ + + +
Sbjct: 267 CSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDS---PCKMKEDCFRYYSSEYHY 323
Query: 242 TSGV-----DHMM--HLLQSGPIGVYLN------HRLIESYDGNPIRRNDWACNPHKL-D 287
G + +M L+ GP+ V H Y +R NP +L +
Sbjct: 324 VGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIYHHTGLRD---PFNPFELTN 380
Query: 288 HAVAIVGYG--EKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLAS 339
HAV +VGYG +G+ WIV+NSWG ++GYF+I RG + C IES A A+
Sbjct: 381 HAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAAT 434
>pdb|1YAL|A Chain A, Carica Papaya Chymopapain At 1.7 Angstroms Resolution
Length = 218
Score = 100 bits (249), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 106/219 (48%), Gaps = 18/219 (8%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHG 186
P+S+DWR + PV++QG CGS WAF+T A +E ++ L LS+ +LV+CD
Sbjct: 2 PQSIDWRAKGA--VTPVKNQGACGSXWAFSTIATVEGINKIVTGNLLELSEQELVDCDKH 59
Query: 187 NLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGVD 246
+ C GG + +YV G+ + YPY+ K+ K K+ ++
Sbjct: 60 SYGCKGGYQTTSLQYVANNGVHTSKVYPYQAKQYKCRATDKPGPKVKITGYKRVPSNXET 119
Query: 247 HMMHLLQSGPIGVYLNHRLIESYDGNPIRRN-----DWACNPHKLDHAVAIVGYGEKNGI 301
+ L + P+ V L+E+ G P + D C KLDHAV VGYG +G
Sbjct: 120 SFLGALANQPLSV-----LVEA-GGKPFQLYKSGVFDGPCG-TKLDHAVTAVGYGTSDGK 172
Query: 302 LTWIVRNSWGDIGPDHGYFQIERGA----NACGIESYAY 336
I++NSWG + GY +++R + CG+ +Y
Sbjct: 173 NYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSY 211
>pdb|3U8E|A Chain A, Crystal Structure Of Cysteine Protease From Bulbs Of
Crocus Sativus At 1.3 A Resolution
Length = 222
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/220 (33%), Positives = 101/220 (45%), Gaps = 18/220 (8%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHG 186
P S+DWR K + V+ QG CG CWAF T +E A+ L +S+ Q+V+CD
Sbjct: 2 PASIDWR--KKGAVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTX 59
Query: 187 NLNCNGGNIDVAFEYV-KQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV 245
GG+ D AF +V G+ S A+YPY + C K A T V +
Sbjct: 60 XXXXXGGDADDAFRWVITNGGIASDANYPYTGVDG---TCDLNKPIAARIDGYTNVPNSS 116
Query: 246 DHMMHLLQSGPIGV--YLNHRLIESYDGNPIRRNDWAC--NPHKLDHAVAIVGYGEKNGI 301
++ + P+ V Y + + Y G I +C +P +DH V IVGYG NG
Sbjct: 117 SALLDAVAKQPVSVNIYTSSTSFQLYTGPGIFAGS-SCSDDPATVDHTVLIVGYGS-NGT 174
Query: 302 LT--WIVRNSWGDIGPDHGYFQIERGAN----ACGIESYA 335
WIV+NSWG GY I R N C I+++
Sbjct: 175 NADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWG 214
>pdb|1O0E|A Chain A, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
pdb|1O0E|B Chain B, 1.9 Angstrom Crystal Structure Of A Plant Cysteine
Protease Ervatamin C
Length = 208
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 103/236 (43%), Gaps = 58/236 (24%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185
LP+ +DWR K + PV++QG CGSCWAF+T + +ES + L LS+ +LV+CD
Sbjct: 1 LPEQIDWR--KKGAVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDK 58
Query: 186 GNLNCNGGNIDVAFEY-VKQYGLESQADYPYRNKE---------------NITFRCTYEK 229
N C GG A++Y + G+++QA+YPY+ + N C
Sbjct: 59 KNHGCLGGAFVFAYQYIINNGGIDTQANYPYKAVQGPCQAASKVVSIDGYNGVPFCNEXA 118
Query: 230 EKAKVFVQDTWVTSGVDHMMHLLQ-------SGPIGVYLNHRLIESYDGNPIRRNDWACN 282
K V VQ + T +D Q SGP G
Sbjct: 119 LKQAVAVQPS--TVAIDASSAQFQQYSSGIFSGPCGT----------------------- 153
Query: 283 PHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIER--GANACGIESYAY 336
KL+H V IVGY WIVRNSWG + GY ++ R G CGI Y
Sbjct: 154 --KLNHGVTIVGYQAN----YWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPY 203
>pdb|1AEC|A Chain A, Crystal Structure Of Actinidin-E-64 Complex+
Length = 218
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 104/219 (47%), Gaps = 20/219 (9%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD- 184
LP +DWR + V ++SQG CG CWAF+ A +E ++ L LS+ +L++C
Sbjct: 1 LPSYVDWRSAGAVV--DIKSQGECGGCWAFSAIATVEGINKIVTGVLISLSEQELIDCGR 58
Query: 185 -HGNLNCNGGNIDVAFEY-VKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVT 242
CNGG I F++ + G+ ++ +YPY ++ C + + K DT+
Sbjct: 59 TQNTRGCNGGYITDGFQFIINNGGINTEENYPYTAQDG---ECNVDLQNEKYVTIDTYEN 115
Query: 243 SGVDHMMHL---LQSGPIGVYLNHR--LIESYDGNPIRRNDWACNPHKLDHAVAIVGYGE 297
++ L + P+ V L+ + Y C +DHAV IVGYG
Sbjct: 116 VPYNNEWALQTAVTYQPVSVALDAAGDAFKQYSSGIFTG---PCG-TAIDHAVTIVGYGT 171
Query: 298 KNGILTWIVRNSWGDIGPDHGYFQIER---GANACGIES 333
+ GI WIV+NSW + GY +I R GA CGI +
Sbjct: 172 EGGIDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIAT 210
>pdb|3P5U|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5V|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
pdb|3P5X|A Chain A, Actinidin From Actinidia Arguta Planch (Sarusashi)
Length = 220
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/217 (32%), Positives = 106/217 (48%), Gaps = 20/217 (9%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD- 184
LP +DWR S V ++ QG+CGS WAF+T A +E + L LS+ +LV+C
Sbjct: 1 LPDYVDWRSSGAVV--DIKDQGQCGSXWAFSTIAAVEGINKIATGDLISLSEQELVDCGR 58
Query: 185 -HGNLNCNGGNIDVAFEY-VKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVT 242
C+GG + F++ + G+ ++A+YPY +E +C + ++ K DT+
Sbjct: 59 TQNTRGCDGGFMTDGFQFIINNGGINTEANYPYTAEEG---QCNLDLQQEKYVSIDTYEN 115
Query: 243 SGVDHMMHL---LQSGPIGVYLNHRL--IESYDGNPIRRNDWACNPHKLDHAVAIVGYGE 297
++ L + P+ V L + Y C +DHAV IVGYG
Sbjct: 116 VPYNNEWALQTAVAYQPVSVALEAAGYNFQHYSSGIFTG---PCGT-AVDHAVTIVGYGT 171
Query: 298 KNGILTWIVRNSWGDIGPDHGYFQIER---GANACGI 331
+ GI WIV+NSWG + GY +I+R G CGI
Sbjct: 172 EGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGI 208
>pdb|1IWD|A Chain A, Proposed Amino Acid Sequence And The 1.63 Angstrom X-ray
Crystal Structure Of A Plant Cysteine Protease Ervatamin
B: Insight Into The Structural Basis Of Its Stability
And Substrate Specificity
Length = 215
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 74/232 (31%), Positives = 103/232 (44%), Gaps = 53/232 (22%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185
LP +DWR +N +++Q +CGSCWAF+ A +ES + L LS+ +LV+CD
Sbjct: 1 LPSFVDWRSKGA--VNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDT 58
Query: 186 GNLNCNGGNIDVAFEY-VKQYGLESQADYPYRNKE-------------NITFRCTYEKEK 231
+ CNGG ++ AF+Y + G+++Q +YPY + N R T E
Sbjct: 59 ASHGCNGGWMNNAFQYIITNGGIDTQQNYPYSAVQGSCKPYRLRVVSINGFQRVTRNNES 118
Query: 232 A---KVFVQDTWVT-----SGVDHMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNP 283
A V Q VT + H + +GP G N
Sbjct: 119 ALQSAVASQPVSVTVEAAGAPFQHYSSGIFTGPCGTAQN--------------------- 157
Query: 284 HKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIER----GANACGI 331
H V IVGYG ++G WIVRNSWG + GY +ER A CGI
Sbjct: 158 ----HGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGI 205
>pdb|2BDZ|A Chain A, Mexicain From Jacaratia Mexicana
pdb|2BDZ|B Chain B, Mexicain From Jacaratia Mexicana
pdb|2BDZ|C Chain C, Mexicain From Jacaratia Mexicana
pdb|2BDZ|D Chain D, Mexicain From Jacaratia Mexicana
Length = 214
Score = 97.8 bits (242), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 111/220 (50%), Gaps = 22/220 (10%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHG 186
P+S+DWR+ + PV++Q CGSCWAF+T A +E ++ L LS+ +L++C+
Sbjct: 2 PESIDWREKGA--VTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERR 59
Query: 187 NLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRC-TYEKEKAKVFVQDTWVTSGV 245
+ C+GG + +YV G+ ++ +YPY K+ RC +K+ KV++
Sbjct: 60 SHGCDGGYQTTSLQYVVDNGVHTEREYPYEKKQG---RCRAKDKKGPKVYITGYKYVPAN 116
Query: 246 DH--MMHLLQSGPIGVYLNH--RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGI 301
D ++ + + P+ V + R + Y G I N DHAV VGYG+ +
Sbjct: 117 DEISLIQAIANQPVSVVTDSRGRGFQFYKGG-IYEGPCGTN---TDHAVTAVGYGKTYLL 172
Query: 302 LTWIVRNSWGDIGPDHGYFQIERGA----NACGIESYAYL 337
L +NSWG + GY +I+R + CG+ + ++
Sbjct: 173 L----KNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFF 208
>pdb|1PCI|A Chain A, Procaricain
pdb|1PCI|B Chain B, Procaricain
pdb|1PCI|C Chain C, Procaricain
Length = 322
Score = 97.1 bits (240), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 146/321 (45%), Gaps = 42/321 (13%)
Query: 38 KQVDAFKTYIVKWNRTYTDDNEIKTRFEYFKQDGKETDE--------YYGTSGSSDRSPQ 89
+ + F ++++ N+ Y + +E RFE FK + DE + G + +D S
Sbjct: 17 RLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSND 76
Query: 90 EILQRTGLRLTGKEKERLEADRERVKKFLNERKKGPLPKSLDWRQSKVKVLNPVESQGRC 149
E ++ L E+ D E F+NE LP+++DWR K + PV QG C
Sbjct: 77 EFNEKYVGSLIDATIEQ-SYDEE----FINEDIVN-LPENVDWR--KKGAVTPVRHQGSC 128
Query: 150 GSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVKQYGLES 209
GSCWAF+ A +E + L LS+ +LV+C+ + C GG A EYV + G+
Sbjct: 129 GSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKNGIHL 188
Query: 210 QADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV--------DHMMHLLQSGPIGVYL 261
++ YPY+ K+ +AK TSGV ++++ + P+ V +
Sbjct: 189 RSKYPYKAKQGTC--------RAKQVGGPIVKTSGVGRVQPNNEGNLLNAIAKQPVSVVV 240
Query: 262 NH--RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGY 319
R + Y G + C K+D AV VGYG+ G +++NSWG + GY
Sbjct: 241 ESKGRPFQLYKGGIF---EGPCG-TKVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGY 296
Query: 320 FQIERG----ANACGIESYAY 336
+I+R CG+ +Y
Sbjct: 297 IRIKRAPGNSPGVCGLYKSSY 317
>pdb|1ICF|A Chain A, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|C Chain C, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
Length = 175
Score = 96.3 bits (238), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/179 (35%), Positives = 90/179 (50%), Gaps = 18/179 (10%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD-- 184
P+S+DWR+ + PV++QG+CGSCWAF+ T LE Q+ L LS+ LV+C
Sbjct: 2 PRSVDWREKGY--VTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 59
Query: 185 HGNLNCNGGNIDVAFEYVK-QYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTS 243
GN CNGG +D AF+YV+ GL+S+ YPY E C Y + + DT
Sbjct: 60 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE---SCKYNPKYS--VANDTGFVD 114
Query: 244 GVDHMMHLLQS----GPIGVYLN--HRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYG 296
L+++ GPI V ++ H Y D C+ +DH V +VGYG
Sbjct: 115 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYG 171
>pdb|1PIP|A Chain A, Crystal Structure Of
Papain-Succinyl-Gln-Val-Val-Ala-Ala-P- Nitroanilide
Complex At 1.7 Angstroms Resolution: Noncovalent Binding
Mode Of A Common Sequence Of Endogenous Thiol Protease
Inhibitors
pdb|1POP|A Chain A, X-Ray Crystallographic Structure Of A Papain-Leupeptin
Complex
pdb|1CVZ|A Chain A, Crystal Structure Analysis Of Papain With
Clik148(Cathepsin L Specific Inhibitor)
pdb|1BP4|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1BQI|A Chain A, Use Of Papain As A Model For The Structure-Based Design Of
Cathepsin K Inhibitors. Crystal Structures Of Two Papain
Inhibitor Complexes Demonstrate Binding To S'-Subsites.
pdb|1PE6|A Chain A, Refined X-Ray Structure Of Papain(Dot)e-64-C Complex At
2.1-Angstroms Resolution
pdb|1PPD|A Chain A, Restrained Least-Squares Refinement Of The Sulfhydryl
Protease Papain To 2.0 Angstroms
pdb|2PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|4PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|6PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|1PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
pdb|5PAD|A Chain A, Binding Of Chloromethyl Ketone Substrate Analogues To
Crystalline Papain
Length = 212
Score = 95.9 bits (237), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 112/225 (49%), Gaps = 32/225 (14%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185
+P+ +DWRQ + PV++QG CGSCWAF+ +E + + L S+ +L++CD
Sbjct: 1 IPEYVDWRQKGA--VTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDR 58
Query: 186 GNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV 245
+ CNGG A + V QYG+ + YPY E + C +EK + T GV
Sbjct: 59 RSYGCNGGYPWSALQLVAQYGIHYRNTYPY---EGVQRYCR-SREKGPYAAK----TDGV 110
Query: 246 DH--------MMHLLQSGPIGVYLNH--RLIESYDGNPIRRNDWACNPHKLDHAVAIVGY 295
+++ + + P+ V L + + Y G C +K+DHAVA VGY
Sbjct: 111 RQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVG---PCG-NKVDHAVAAVGY 166
Query: 296 GEKNGILTWIVRNSWGDIGPDHGYFQIERGA----NACGIESYAY 336
G N IL ++NSWG ++GY +I+RG CG+ + ++
Sbjct: 167 GP-NYIL---IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSF 207
>pdb|1KHP|A Chain A, Monoclinic Form Of Papain/zlfg-dam Covalent Complex
pdb|1KHQ|A Chain A, Orthorhombic Form Of PapainZLFG-Dam Covalent Complex
pdb|1PPN|A Chain A, Structure Of Monoclinic Papain At 1.60 Angstroms
Resolution
pdb|3E1Z|B Chain B, Crystal Structure Of The Parasite Protesase Inhibitor
Chagasin In Complex With Papain
Length = 212
Score = 95.5 bits (236), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/225 (31%), Positives = 112/225 (49%), Gaps = 32/225 (14%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185
+P+ +DWRQ + PV++QG CGSCWAF+ +E + + L S+ +L++CD
Sbjct: 1 IPEYVDWRQKGA--VTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDR 58
Query: 186 GNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV 245
+ CNGG A + V QYG+ + YPY E + C +EK + T GV
Sbjct: 59 RSYGCNGGYPWSALQLVAQYGIHYRNTYPY---EGVQRYCR-SREKGPYAAK----TDGV 110
Query: 246 DH--------MMHLLQSGPIGVYLNH--RLIESYDGNPIRRNDWACNPHKLDHAVAIVGY 295
+++ + + P+ V L + + Y G C +K+DHAVA VGY
Sbjct: 111 RQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVG---PCG-NKVDHAVAAVGY 166
Query: 296 GEKNGILTWIVRNSWGDIGPDHGYFQIERGA----NACGIESYAY 336
G N IL ++NSWG ++GY +I+RG CG+ + ++
Sbjct: 167 G-PNYIL---IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSF 207
>pdb|1JQP|A Chain A, Dipeptidyl Peptidase I (Cathepsin C), A Tetrameric
Cysteine Protease Of The Papain Family
Length = 438
Score = 95.5 bits (236), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 113/230 (49%), Gaps = 20/230 (8%)
Query: 126 LPKSLDWRQSK-VKVLNPVESQGRCGSCWAFATTAILESQVALL-KKTLYP-LSKSQLVE 182
LP+S DWR + + ++PV +Q CGSC++FA+ +LE+++ +L + P LS ++V
Sbjct: 206 LPESWDWRNVRGINFVSPVRNQESCGSCYSFASLGMLEARIRILTNNSQTPILSPQEVVS 265
Query: 183 CDHGNLNCNGG-NIDVAFEYVKQYGLESQADYPY-------RNKENITFRCTYEKEKAKV 234
C C+GG +A +Y + +G+ + +PY + KEN Y +
Sbjct: 266 CSPYAQGCDGGFPYLIAGKYAQDFGVVEENCFPYTATDAPCKPKENCL---RYYSSEYYY 322
Query: 235 FVQDTWVTSGVDHMMHLLQSGPIGVYLN-HRLIESYDGNPIRRNDWA--CNPHKL-DHAV 290
+ + L++ GP+ V H Y + NP +L +HAV
Sbjct: 323 VGGFYGGCNEALMKLELVKHGPMAVAFEVHDDFLHYHSGIYHHTGLSDPFNPFELTNHAV 382
Query: 291 AIVGYGEK--NGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLA 338
+VGYG+ G+ WIV+NSWG + GYF+I RG + C IES A A
Sbjct: 383 LLVGYGKDPVTGLDYWIVKNSWGSQWGESGYFRIRRGTDECAIESIAMAA 432
>pdb|2VHS|A Chain A, Cathsilicatein, A Chimera
pdb|2VHS|B Chain B, Cathsilicatein, A Chimera
pdb|2VHS|C Chain C, Cathsilicatein, A Chimera
pdb|2VHS|D Chain D, Cathsilicatein, A Chimera
Length = 217
Score = 95.1 bits (235), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 75/222 (33%), Positives = 112/222 (50%), Gaps = 14/222 (6%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD-- 184
P+S+DWR+ + PV++QG+CG+ +AF+ T LE Q+ L LS+ LV+C
Sbjct: 2 PRSVDWREKGY--VTPVKNQGQCGASYAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 59
Query: 185 HGNLNCNGGNIDVAFEYVK-QYGLESQADYPYR-NKENITFRCTYEKEKAKVFVQDTWVT 242
GN CNGG +D AF+YV+ GL+S+ YPY +E+ + Y FV
Sbjct: 60 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDVGFVDIPKQE 119
Query: 243 SGVDHMMHLLQSGPIGVYLN--HRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGE-KN 299
+ M + GPI V ++ H Y + C+ L+HA+ +VGYG N
Sbjct: 120 KAL--MKAVATVGPISVAIDAGHESFLFYKEGIYFSS--DCSSSSLNHAMLVVGYGFISN 175
Query: 300 GILTWIVRNSWGDIGPDHGYFQIERG-ANACGIESYAYLASV 340
W+V+NSWG+ GY ++ + N CGI S A +V
Sbjct: 176 NQKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 217
>pdb|1PPP|A Chain A, Crystal Structure Of Papain-E64-C Complex. Binding
Diversity Of E64-C To Papain S2 And S3 Subsites
Length = 212
Score = 94.7 bits (234), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 71/224 (31%), Positives = 111/224 (49%), Gaps = 32/224 (14%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHG 186
P+ +DWRQ + PV++QG CGSCWAF+ +E + + L S+ +L++CD
Sbjct: 2 PEYVDWRQKGA--VTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRR 59
Query: 187 NLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGVD 246
+ CNGG A + V QYG+ + YPY E + C +EK + T GV
Sbjct: 60 SYGCNGGYPWSALQLVAQYGIHYRNTYPY---EGVQRYCR-SREKGPYAAK----TDGVR 111
Query: 247 H--------MMHLLQSGPIGVYLNH--RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYG 296
+++ + + P+ V L + + Y G C +K+DHAVA VGYG
Sbjct: 112 QVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVG---PCG-NKVDHAVAAVGYG 167
Query: 297 EKNGILTWIVRNSWGDIGPDHGYFQIERGA----NACGIESYAY 336
N IL ++NSWG ++GY +I+RG CG+ + ++
Sbjct: 168 P-NYIL---IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSF 207
>pdb|1PPO|A Chain A, Determination Of The Structure Of Papaya Protease Omega
Length = 216
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 108/225 (48%), Gaps = 28/225 (12%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185
LP+++DWR K + PV QG CGSCWAF+ A +E + L LS+ +LV+C+
Sbjct: 1 LPENVDWR--KKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCER 58
Query: 186 GNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV 245
+ C GG A EYV + G+ ++ YPY+ K+ +AK TSGV
Sbjct: 59 RSHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTC--------RAKQVGGPIVKTSGV 110
Query: 246 --------DHMMHLLQSGPIGVYLNH--RLIESYDGNPIRRNDWACNPHKLDHAVAIVGY 295
++++ + P+ V + R + Y G + C K+DHAV VGY
Sbjct: 111 GRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIF---EGPCG-TKVDHAVTAVGY 166
Query: 296 GEKNGILTWIVRNSWGDIGPDHGYFQIERG----ANACGIESYAY 336
G+ G +++NSWG + GY +I+R CG+ +Y
Sbjct: 167 GKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSY 211
>pdb|1MEG|A Chain A, Crystal Structure Of A Caricain D158e Mutant In Complex
With E-64
Length = 216
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 69/225 (30%), Positives = 108/225 (48%), Gaps = 28/225 (12%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185
LP+++DWR K + PV QG CGSCWAF+ A +E + L LS+ +LV+C+
Sbjct: 1 LPENVDWR--KKGAVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCER 58
Query: 186 GNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV 245
+ C GG A EYV + G+ ++ YPY+ K+ +AK TSGV
Sbjct: 59 RSHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQGTC--------RAKQVGGPIVKTSGV 110
Query: 246 --------DHMMHLLQSGPIGVYLNH--RLIESYDGNPIRRNDWACNPHKLDHAVAIVGY 295
++++ + P+ V + R + Y G + C K++HAV VGY
Sbjct: 111 GRVQPNNEGNLLNAIAKQPVSVVVESKGRPFQLYKGGIF---EGPCG-TKVEHAVTAVGY 166
Query: 296 GEKNGILTWIVRNSWGDIGPDHGYFQIERG----ANACGIESYAY 336
G+ G +++NSWG + GY +I+R CG+ +Y
Sbjct: 167 GKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSY 211
>pdb|1MHW|A Chain A, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|B Chain B, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 175
Score = 92.0 bits (227), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 89/179 (49%), Gaps = 18/179 (10%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD-- 184
P+S+DWR+ + PV++QG+CGS WAF+ T LE Q+ L LS+ LV+C
Sbjct: 2 PRSVDWREKGY--VTPVKNQGQCGSXWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGP 59
Query: 185 HGNLNCNGGNIDVAFEYVKQY-GLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTS 243
GN CNGG +D AF+YV+ GL+S+ YPY E C Y + + DT
Sbjct: 60 QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE---SCKYNPKYS--VANDTGFVD 114
Query: 244 GVDHMMHLLQS----GPIGVYLN--HRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYG 296
L+++ GPI V ++ H Y D C+ +DH V +VGYG
Sbjct: 115 IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD--CSSEDMDHGVLVVGYG 171
>pdb|1GEC|E Chain E, Glycyl Endopeptidase-complex With
Benzyloxycarbonyl-leucine-valine- Glycine-methylene
Covalently Bound To Cysteine 25
Length = 216
Score = 92.0 bits (227), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/217 (30%), Positives = 106/217 (48%), Gaps = 12/217 (5%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185
LP+S+DWR + PV+ QG C SCWAF+T A +E + L LS+ +LV+CD
Sbjct: 1 LPESVDWRAKGA--VTPVKHQGYCESCWAFSTVATVEGINKIKTGNLVELSEQELVDCDL 58
Query: 186 GNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV 245
+ CN G + +YV Q G+ +A YPY K+ K K ++
Sbjct: 59 QSYGCNRGYQSTSLQYVAQNGIHLRAKYPYIAKQQTCRANQVGGPKVKTNGVGRVQSNNE 118
Query: 246 DHMMHLLQSGPIGVYLNH--RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILT 303
+++ + P+ V + R ++Y G + +C K+DHAV VGYG+ G
Sbjct: 119 GSLLNAIAHQPVSVVVESAGRDFQNYKGGIF---EGSCGT-KVDHAVTAVGYGKSGGKGY 174
Query: 304 WIVRNSWGDIGPDHGYFQIERGA----NACGIESYAY 336
+++NSWG ++GY +I R + CG+ +Y
Sbjct: 175 ILIKNSWGPGWGENGYIRIRRASGNSPGVCGVYRSSY 211
>pdb|1STF|E Chain E, The Refined 2.4 Angstroms X-Ray Crystal Structure Of
Recombinant Human Stefin B In Complex With The Cysteine
Proteinase Papain: A Novel Type Of Proteinase Inhibitor
Interaction
pdb|9PAP|A Chain A, Structure Of Papain Refined At 1.65 Angstroms Resolution
Length = 212
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 111/225 (49%), Gaps = 32/225 (14%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185
+P+ +DWRQ + PV++QG CGS WAF+ +E + + L S+ +L++CD
Sbjct: 1 IPEYVDWRQKGA--VTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDR 58
Query: 186 GNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV 245
+ CNGG A + V QYG+ + YPY E + C +EK + T GV
Sbjct: 59 RSYGCNGGYPWSALQLVAQYGIHYRNTYPY---EGVQRYCR-SREKGPYAAK----TDGV 110
Query: 246 DH--------MMHLLQSGPIGVYLNH--RLIESYDGNPIRRNDWACNPHKLDHAVAIVGY 295
+++ + + P+ V L + + Y G C +K+DHAVA VGY
Sbjct: 111 RQVQPYNQGALLYSIANQPVSVVLQAAGKDFQLYRGGIFVG---PCG-NKVDHAVAAVGY 166
Query: 296 GEKNGILTWIVRNSWGDIGPDHGYFQIERGA----NACGIESYAY 336
G N IL ++NSWG ++GY +I+RG CG+ + ++
Sbjct: 167 GP-NYIL---IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSF 207
>pdb|3IMA|A Chain A, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|C Chain C, Complex Strcuture Of Tarocystatin And Papain
pdb|3LFY|A Chain A, Ctd Of Tarocystatin In Complex With Papain
pdb|3LFY|C Chain C, Ctd Of Tarocystatin In Complex With Papain
Length = 212
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 111/225 (49%), Gaps = 32/225 (14%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185
+P+ +DWRQ + PV++QG CGS WAF+ +E + + L S+ +L++CD
Sbjct: 1 IPEYVDWRQKGA--VTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDR 58
Query: 186 GNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV 245
+ CNGG A + V QYG+ + YPY E + C +EK + T GV
Sbjct: 59 RSYGCNGGYPWSALQLVAQYGIHYRNTYPY---EGVQRYCR-SREKGPYAAK----TDGV 110
Query: 246 DH--------MMHLLQSGPIGVYLNH--RLIESYDGNPIRRNDWACNPHKLDHAVAIVGY 295
+++ + + P+ V L + + Y G C +K+DHAVA VGY
Sbjct: 111 RQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVG---PCG-NKVDHAVAAVGY 166
Query: 296 GEKNGILTWIVRNSWGDIGPDHGYFQIERGA----NACGIESYAY 336
G N IL ++NSWG ++GY +I+RG CG+ + ++
Sbjct: 167 G-PNYIL---IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSF 207
>pdb|2CIO|A Chain A, The High Resolution X-Ray Structure Of Papain Complexed
With Fragments Of The Trypanosoma Brucei Cysteine
Protease Inhibitor Icp
Length = 212
Score = 91.7 bits (226), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 70/225 (31%), Positives = 111/225 (49%), Gaps = 32/225 (14%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185
+P+ +DWRQ + PV++QG CGS WAF+ +E + + L S+ +L++CD
Sbjct: 1 IPEYVDWRQKGA--VTPVKNQGSCGSXWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDR 58
Query: 186 GNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV 245
+ CNGG A + V QYG+ + YPY E + C +EK + T GV
Sbjct: 59 RSYGCNGGYPWSALQLVAQYGIHYRNTYPY---EGVQRYCR-SREKGPYAAK----TDGV 110
Query: 246 DH--------MMHLLQSGPIGVYLNH--RLIESYDGNPIRRNDWACNPHKLDHAVAIVGY 295
+++ + + P+ V L + + Y G C +K+DHAVA VGY
Sbjct: 111 RQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVG---PCG-NKVDHAVAAVGY 166
Query: 296 GEKNGILTWIVRNSWGDIGPDHGYFQIERGA----NACGIESYAY 336
G N IL ++NSWG ++GY +I+RG CG+ + ++
Sbjct: 167 GP-NYIL---IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSF 207
>pdb|3BPM|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BPM|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
Leupeptin
pdb|3BWK|A Chain A, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|B Chain B, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|C Chain C, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
pdb|3BWK|D Chain D, Crystal Structure Of Falcipain-3 With Its Inhibitor,
K11017
Length = 243
Score = 90.5 bits (223), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 109/228 (47%), Gaps = 30/228 (13%)
Query: 129 SLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNL 188
+ DWR + PV+ Q CGSCWAF++ +ESQ A+ KK L+ S+ +LV+C N
Sbjct: 23 AYDWRLHGG--VTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNN 80
Query: 189 NCNGGNIDVAF-EYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGVDH 247
C GG I AF + + GL SQ DYPY + N+ C ++ + ++ ++V+ D
Sbjct: 81 GCYGGYITNAFDDMIDLGGLCSQDDYPYVS--NLPETCNLKRCNERYTIK-SYVSIPDDK 137
Query: 248 MMHLLQS-GPIGVYLNHRLIESYDGNPIRRN---DWACNPHKLDHAVAIVGYGEKN---- 299
L+ GPI + I + D R D C +HAV +VGYG K+
Sbjct: 138 FKEALRYLGPISI-----SIAASDDFAFYRGGFYDGECGAAP-NHAVILVGYGMKDIYNE 191
Query: 300 ------GILTWIVRNSWGDIGPDHGYFQIERGANA----CGIESYAYL 337
+I++NSWG + GY +E N C I + AY+
Sbjct: 192 DTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYV 239
>pdb|3MOR|A Chain A, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
pdb|3MOR|B Chain B, Crystal Structure Of Cathepsin B From Trypanosoma Brucei
Length = 317
Score = 89.7 bits (221), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 74/285 (25%), Positives = 112/285 (39%), Gaps = 56/285 (19%)
Query: 89 QEILQRTGLRLTGKEKERLEADRERVKKFLNERKKGPLPKSLDWRQS--KVKVLNPVESQ 146
Q I R RL G K+ A ++F E + PLP S D ++ + + Q
Sbjct: 34 QNITLREAKRLNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQ 93
Query: 147 GRCGSCWAFATTAILESQVALLK--KTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVKQ 204
CGSCWA A + + + + + ++ + L C CNGG+ D A+ Y
Sbjct: 94 SACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCNGGDPDRAWAYFSS 153
Query: 205 YGL-----------------ESQADYPYRNKENI-TFRCTYEKEKAKVFVQD--TWVTSG 244
GL +S+ YP ++ N T +C Y + + V + +W +
Sbjct: 154 TGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSYA 213
Query: 245 V----DHMMHLLQSGPIGVYLN-------------HRLIESYDGNPIRRNDWACNPHKLD 287
+ D+M L GP V + H + Y G
Sbjct: 214 LQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGG--------------- 258
Query: 288 HAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIE 332
HAV +VG+G NG+ W + NSW GYF I RG++ CGIE
Sbjct: 259 HAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIE 303
>pdb|4HWY|A Chain A, Trypanosoma Brucei Procathepsin B Solved From 40 Fs
Free-electron Laser Pulse Data By Serial Femtosecond
X-ray Crystallography
Length = 340
Score = 89.4 bits (220), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 114/286 (39%), Gaps = 58/286 (20%)
Query: 89 QEILQRTGLRLTGKEKERLEADRERVKKFLNERKKGPLPKSLDWRQS--KVKVLNPVESQ 146
Q I R RL G K+ A ++F E + PLP S D ++ + + Q
Sbjct: 57 QNITLREAKRLNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQ 116
Query: 147 GRCGSCWAFATTAILESQVALLKKTL-YPLSKSQLVEC--DHGNLNCNGGNIDVAFEYVK 203
CGSCWA A + + + + +S L+ C D G+ CNGG+ D A+ Y
Sbjct: 117 SACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGD-GCNGGDPDRAWAYFS 175
Query: 204 QYGL-----------------ESQADYPYRNKENI-TFRCTYEKEKAKVFVQD--TWVTS 243
GL +S+ YP ++ N T +C Y + + V + +W +
Sbjct: 176 STGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCNYTCDDPTIPVVNYRSWTSY 235
Query: 244 GV----DHMMHLLQSGPIGVYLN-------------HRLIESYDGNPIRRNDWACNPHKL 286
+ D+M L GP V + H + Y G
Sbjct: 236 ALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGG-------------- 281
Query: 287 DHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIE 332
HAV +VG+G NG+ W + NSW GYF I RG++ CGIE
Sbjct: 282 -HAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIE 326
>pdb|3HHI|A Chain A, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
pdb|3HHI|B Chain B, Crystal Structure Of Cathepsin B From T. Brucei In Complex
With Ca074
Length = 325
Score = 89.0 bits (219), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 77/286 (26%), Positives = 114/286 (39%), Gaps = 58/286 (20%)
Query: 89 QEILQRTGLRLTGKEKERLEADRERVKKFLNERKKGPLPKSLDWRQS--KVKVLNPVESQ 146
Q I R RL G K+ A ++F E + PLP S D ++ + + Q
Sbjct: 35 QNITLREAKRLNGVIKKNNNASILPKRRFTEEEARAPLPSSFDSAEAWPNCPTIPQIADQ 94
Query: 147 GRCGSCWAFATTAILESQVALLKKTL-YPLSKSQLVEC--DHGNLNCNGGNIDVAFEYVK 203
CGSCWA A + + + + +S L+ C D G+ CNGG+ D A+ Y
Sbjct: 95 SACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGD-GCNGGDPDRAWAYFS 153
Query: 204 QYGL-----------------ESQADYPYRNKENI-TFRCTYEKEKAKVFVQD--TWVTS 243
GL +S+ YP ++ N T +C Y + + V + +W +
Sbjct: 154 STGLVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYRSWTSY 213
Query: 244 GV----DHMMHLLQSGPIGVYLN-------------HRLIESYDGNPIRRNDWACNPHKL 286
+ D+M L GP V + H + Y G
Sbjct: 214 ALQGEDDYMRELFFRGPFEVAFDVYEDFIAYNSGVYHHVSGQYLGG-------------- 259
Query: 287 DHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIE 332
HAV +VG+G NG+ W + NSW GYF I RG++ CGIE
Sbjct: 260 -HAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIE 304
>pdb|2AS8|A Chain A, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
pdb|2AS8|B Chain B, Crystal Structure Of Mature And Fully Active Der P 1
Allergen
Length = 222
Score = 88.6 bits (218), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 65/220 (29%), Positives = 99/220 (45%), Gaps = 12/220 (5%)
Query: 123 KGPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVE 182
G P +D RQ ++ + P+ QG CGSCWAF+ A ES ++ L++ +LV+
Sbjct: 7 NGNAPAEIDLRQ--MRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRQQSLDLAEQELVD 64
Query: 183 C--DHGNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTW 240
C HG C+G I EY++ G+ ++ Y Y +E R ++ + Q
Sbjct: 65 CASQHG---CHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGISNYCQIYP 121
Query: 241 VTSGVDHMMHLLQSGPIGVYLNHRLIES---YDGNPIRRNDWACNPHKLDHAVAIVGYGE 297
+ I V + + +++ YDG I + D P+ HAV IVGY
Sbjct: 122 PNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGYSN 179
Query: 298 KNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYL 337
G+ WIVRNSW D+GY + IE Y Y+
Sbjct: 180 AQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYV 219
>pdb|3RVW|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
pdb|3RVX|A Chain A, Crystal Structure Of Der P 1 Complexed With Fab 4c1
Length = 222
Score = 88.2 bits (217), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 101/222 (45%), Gaps = 16/222 (7%)
Query: 123 KGPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVE 182
G P +D RQ ++ + P+ QG CGSCWAF+ A ES + L++ +LV+
Sbjct: 7 NGNAPAEIDLRQ--MRTVTPIRMQGGCGSCWAFSGVAATESAYLAYRNQSLDLAEQELVD 64
Query: 183 C--DHGNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTW 240
C HG C+G I EY++ G+ ++ Y Y +E R ++ + Q
Sbjct: 65 CASQHG---CHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGISNYCQ--I 119
Query: 241 VTSGVDHMMHLLQS--GPIGVYLNHRLIES---YDGNPIRRNDWACNPHKLDHAVAIVGY 295
V+ + L I V + + +++ YDG I + D P+ HAV IVGY
Sbjct: 120 YPPNVNKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGY 177
Query: 296 GEKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYL 337
G+ WIVRNSW D+GY + IE Y Y+
Sbjct: 178 SNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYV 219
>pdb|1YVB|A Chain A, The Plasmodium Falciparum Cysteine Protease Falcipain-2
pdb|2GHU|A Chain A, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|B Chain B, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|C Chain C, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2GHU|D Chain D, Crystal Structure Of Falcipain-2 From Plasmodium
Falciparum
pdb|2OUL|A Chain A, The Structure Of Chagasin In Complex With A Cysteine
Protease Clarifies The Binding Mode And Evolution Of A
New Inhibitor Family
pdb|3BPF|A Chain A, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|B Chain B, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|C Chain C, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
pdb|3BPF|D Chain D, Crystal Structure Of Falcipain-2 With Its Inhibitor, E64
Length = 241
Score = 88.2 bits (217), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 115/234 (49%), Gaps = 34/234 (14%)
Query: 129 SLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNL 188
+ DWR + PV+ Q CGSCWAF++ +ESQ A+ K L LS+ +LV+C N
Sbjct: 21 AYDWRLHSG--VTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNY 78
Query: 189 NCNGGNIDVAFE-YVKQYGLESQADYPY----RNKENITFRCTYEKEKAKVF--VQDTWV 241
CNGG I+ AFE ++ G+ DYPY N NI RCT EK K + V D +
Sbjct: 79 GCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNID-RCT-EKYGIKNYLSVPDNKL 136
Query: 242 TSGVDHMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGI 301
+ + GPI + + ++ I D C +L+HAV +VG+G K +
Sbjct: 137 KEALRFL------GPISISVAVSDDFAFYKEGIF--DGECG-DQLNHAVMLVGFGMKEIV 187
Query: 302 --LT--------WIVRNSWGDIGPDHGYFQIERGANA----CGIESYAYLASVK 341
LT +I++NSWG + G+ IE + CG+ + A++ ++
Sbjct: 188 NPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLIE 241
>pdb|1XKG|A Chain A, Crystal Structure Of The Major House Dust Mite Allergen
Der P 1 In Its Pro Form At 1.61 A Resolution
Length = 312
Score = 87.8 bits (216), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 83/313 (26%), Positives = 130/313 (41%), Gaps = 28/313 (8%)
Query: 36 SIKQVDAFKTYIVKWNRTYTDDNEIKTRF----EYFKQDGKETDEYYGTSGSSDRSPQEI 91
SIK + +K K T+ D+ + F +Y + +G + SD S E
Sbjct: 4 SIKTFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGGAINHL------SDLSLDEF 57
Query: 92 LQRTGLRLTGKE--KERLEADRERVKKFLNERKKGPLPKSLDWRQSKVKVLNPVESQGRC 149
R + E K + + + E +N G P +D RQ ++ + P+ QG C
Sbjct: 58 KNRFLMSAEAFEHLKTQFDLNAETNACSIN----GNAPAEIDLRQ--MRTVTPIRMQGGC 111
Query: 150 GSCWAFATTAILESQVALLKKTLYPLSKSQLVEC--DHGNLNCNGGNIDVAFEYVKQYGL 207
GS WAF+ A ES + L++ +LV+C HG C+G I EY++ G+
Sbjct: 112 GSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCASQHG---CHGDTIPRGIEYIQHNGV 168
Query: 208 ESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGVDHMMHLLQSGPIGVYLNHRLIE 267
++ Y Y +E R ++ + Q + I V + + ++
Sbjct: 169 VQESYYRYVAREQSCRRPNAQRFGISNYCQIYPPNANKIREALAQTHSAIAVIIGIKDLD 228
Query: 268 S---YDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIER 324
+ YDG I + D P+ HAV IVGY G+ WIVRNSW D+GY
Sbjct: 229 AFRHYDGRTIIQRDNGYQPNY--HAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAA 286
Query: 325 GANACGIESYAYL 337
+ IE Y Y+
Sbjct: 287 NIDLMMIEEYPYV 299
>pdb|3F5V|A Chain A, C2 Crystal Form Of Mite Allergen Der P 1
pdb|3F5V|B Chain B, C2 Crystal Form Of Mite Allergen Der P 1
Length = 222
Score = 84.3 bits (207), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 98/220 (44%), Gaps = 12/220 (5%)
Query: 123 KGPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVE 182
G P +D RQ ++ + P+ QG CGS WAF+ A ES ++ L++ +LV+
Sbjct: 7 NGNAPAEIDLRQ--MRTVTPIRMQGGCGSXWAFSGVAATESAYLAYRQQSLDLAEQELVD 64
Query: 183 C--DHGNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTW 240
C HG C+G I EY++ G+ ++ Y Y +E R ++ + Q
Sbjct: 65 CASQHG---CHGDTIPRGIEYIQHNGVVQESYYRYVAREQSCRRPNAQRFGISNYCQIYP 121
Query: 241 VTSGVDHMMHLLQSGPIGVYLNHRLIES---YDGNPIRRNDWACNPHKLDHAVAIVGYGE 297
+ I V + + +++ YDG I + D P+ HAV IVGY
Sbjct: 122 PNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTIIQRDNGYQPNY--HAVNIVGYSN 179
Query: 298 KNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYL 337
G+ WIVRNSW D+GY + IE Y Y+
Sbjct: 180 AQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYV 219
>pdb|3PNR|A Chain A, Structure Of Pbicp-C In Complex With Falcipain-2
Length = 240
Score = 84.3 bits (207), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 114/234 (48%), Gaps = 34/234 (14%)
Query: 129 SLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNL 188
+ DWR + PV+ Q CGS WAF++ +ESQ A+ K L LS+ +LV+C N
Sbjct: 20 AYDWRLHSG--VTPVKDQKNCGSAWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNY 77
Query: 189 NCNGGNIDVAFE-YVKQYGLESQADYPY----RNKENITFRCTYEKEKAKVF--VQDTWV 241
CNGG I+ AFE ++ G+ DYPY N NI RCT EK K + V D +
Sbjct: 78 GCNGGLINNAFEDMIELGGICPDGDYPYVSDAPNLCNID-RCT-EKYGIKNYLSVPDNKL 135
Query: 242 TSGVDHMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGI 301
+ + GPI + + ++ I D C +L+HAV +VG+G K +
Sbjct: 136 KEALRFL------GPISISVAVSDDFAFYKEGIF--DGECG-DQLNHAVMLVGFGMKEIV 186
Query: 302 --LT--------WIVRNSWGDIGPDHGYFQIERGANA----CGIESYAYLASVK 341
LT +I++NSWG + G+ IE + CG+ + A++ ++
Sbjct: 187 NPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLIE 240
>pdb|3IOQ|A Chain A, Crystal Structure Of The Carica Candamarcensis Cysteine
Protease Cms1ms2 In Complex With E-64
Length = 213
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 66/217 (30%), Positives = 104/217 (47%), Gaps = 22/217 (10%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185
+P S+DWRQ + PV +QG CGSCW F++ A +E ++ L LS+ +L++C+
Sbjct: 1 IPTSIDWRQKGA--VTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCER 58
Query: 186 GNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV 245
+ C GG A +YV G+ + YPY E + +C + K D
Sbjct: 59 RSYGCRGGFPLYALQYVANSGIHLRQYYPY---EGVQRQCRASQAKGPKVKTDGVGRVPR 115
Query: 246 DHMMHLLQS---GPIGVYL--NHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNG 300
++ L+Q P+ + + R ++Y G C +DHAVA VGYG
Sbjct: 116 NNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIF---AGPCG-TSIDHAVAAVGYGND-- 169
Query: 301 ILTWIVRNSWGDIGPDHGYFQIERGA----NACGIES 333
+++NSWG + GY +I+RG+ ACG+ S
Sbjct: 170 --YILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLS 204
>pdb|3F75|A Chain A, Activated Toxoplasma Gondii Cathepsin L (Tgcpl) In Complex
With Its Propeptide
Length = 224
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 94/196 (47%), Gaps = 20/196 (10%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD- 184
LP +DWR + PV+ Q CGSCWAF+TT LE L LS+ +L++C
Sbjct: 7 LPAGVDWRSRGC--VTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSR 64
Query: 185 -HGNLNCNGGNIDVAFEYV-KQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVT 242
GN +C+GG ++ AF+YV G+ S+ YPY ++ + EK + +D
Sbjct: 65 AEGNQSCSGGEMNDAFQYVLDSGGICSEDAYPYLARDEECRAQSCEKVVKILGFKDVPRR 124
Query: 243 SGVDHMMHLLQSGPIGVYLNHRLIESYDGNPIR-----RNDWACNPHKLDHAVAIVGYG- 296
S M L P+ + + D P + D +C LDH V +VGYG
Sbjct: 125 SEA-AMKAALAKSPVSIAIEA------DQMPFQFYHEGVFDASCGT-DLDHGVLLVGYGT 176
Query: 297 -EKNGILTWIVRNSWG 311
+++ WI++NSWG
Sbjct: 177 DKESKKDFWIMKNSWG 192
>pdb|2ACT|A Chain A, Crystallographic Refinement Of The Structure Of Actinidin
At 1.7 Angstroms Resolution By Fast Fourier
Least-Squares Methods
Length = 220
Score = 78.2 bits (191), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 94/241 (39%), Gaps = 64/241 (26%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD- 184
LP +DWR + V ++SQG CG WAF+ A +E + +L LS+ +L++C
Sbjct: 1 LPSYVDWRSAGAVV--DIKSQGECGGXWAFSAIATVEGINKITSGSLISLSEQELIDCGR 58
Query: 185 -HGNLNCNGGNIDVAFEYVKQYG----------------------------LESQADYPY 215
C+GG I F+++ G +++ + PY
Sbjct: 59 TQNTRGCDGGYITDGFQFIINDGGINTEENYPYTAQDGDCDVALQDQKYVTIDTYENVPY 118
Query: 216 RNKENITFRCTYEKEKAKVFVQDTWVTSGVDHMMHLLQSGPIGVYLNHRLIESYDGNPIR 275
N+ + TY+ V V + +GP G
Sbjct: 119 NNEWALQTAVTYQ----PVSVALDAAGDAFKQYASGIFTGPCGT---------------- 158
Query: 276 RNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIER---GANACGIE 332
+DHA+ IVGYG + G+ WIV+NSW + GY +I R GA CGI
Sbjct: 159 ---------AVDHAIVIVGYGTEGGVDYWIVKNSWDTTWGEEGYMRILRNVGGAGTCGIA 209
Query: 333 S 333
+
Sbjct: 210 T 210
>pdb|1EF7|A Chain A, Crystal Structure Of Human Cathepsin X
pdb|1EF7|B Chain B, Crystal Structure Of Human Cathepsin X
Length = 242
Score = 78.2 bits (191), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 104/219 (47%), Gaps = 27/219 (12%)
Query: 126 LPKSLDWRQ-SKVKVLNPVESQG---RCGSCWAFATTAILESQVALLKKTLYP---LSKS 178
LPKS DWR V + +Q CGSCWA A+T+ + ++ + +K +P LS
Sbjct: 1 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 60
Query: 179 QLVECDHGNLNCNGGNIDVAFEYVKQYGL--ESQADYPYRNKENITFR----CTYEKEKA 232
+++C + +C GGN ++Y Q+G+ E+ +Y +++E F C KE
Sbjct: 61 NVIDCGNAG-SCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECH 119
Query: 233 KVF------VQDTWVTSGVDHMM-HLLQSGPI--GVYLNHRLIESYDGNPIRRNDWACNP 283
+ V D SG + MM + +GPI G+ RL G D
Sbjct: 120 AIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQD----T 175
Query: 284 HKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQI 322
++H V++ G+G +G WIVRNSWG+ + G+ +I
Sbjct: 176 TYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 214
>pdb|1DEU|A Chain A, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
pdb|1DEU|B Chain B, Crystal Structure Of Human Procathepsin X: A Cysteine
Protease With The Proregion Covalently Linked To The
Active Site Cysteine
Length = 277
Score = 77.8 bits (190), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 65/219 (29%), Positives = 104/219 (47%), Gaps = 27/219 (12%)
Query: 126 LPKSLDWRQ-SKVKVLNPVESQG---RCGSCWAFATTAILESQVALLKKTLYP---LSKS 178
LPKS DWR V + +Q CGSCWA A+T+ + ++ + +K +P LS
Sbjct: 36 LPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQ 95
Query: 179 QLVECDHGNLNCNGGNIDVAFEYVKQYGL--ESQADYPYRNKENITFR----CTYEKEKA 232
+++C + +C GGN ++Y Q+G+ E+ +Y +++E F C KE
Sbjct: 96 NVIDCGNAG-SCEGGNDLSVWDYAHQHGIPDETCNNYQAKDQECDKFNQCGTCNEFKECH 154
Query: 233 KVF------VQDTWVTSGVDHMM-HLLQSGPI--GVYLNHRLIESYDGNPIRRNDWACNP 283
+ V D SG + MM + +GPI G+ RL G D
Sbjct: 155 AIRNYTLWRVGDYGSLSGREKMMAEIYANGPISCGIMATERLANYTGGIYAEYQD----T 210
Query: 284 HKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQI 322
++H V++ G+G +G WIVRNSWG+ + G+ +I
Sbjct: 211 TYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRI 249
>pdb|1CPJ|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CPJ|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1THE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
pdb|1THE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B- Inhibitor Complex: Implications For
Structure-Based Inhibitor Design
Length = 260
Score = 71.6 bits (174), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 103/250 (41%), Gaps = 48/250 (19%)
Query: 126 LPKSLDWRQ--SKVKVLNPVESQGRCGSCWAFATTAILESQVAL-------LKKTLYPLS 176
LP+S D R+ S + + QG CGSCWAF + ++ + ++ + L
Sbjct: 7 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 66
Query: 177 KSQLVECDHGNLNCNGGNIDVAFEYVKQYGLESQADY----------------------P 214
++C G CNGG A+ + + GL S Y P
Sbjct: 67 TCCGIQCGDG---CNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARP 123
Query: 215 YRNKENITFRC----------TYEKEKAKVFVQDTWVTSGVDHMMHLLQSGPI-GVYLNH 263
E T +C +Y+++K + + S + M + ++GP+ G +
Sbjct: 124 PCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVF 183
Query: 264 RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIE 323
+Y + HA+ I+G+G +NG+ W+V NSW D+G+F+I
Sbjct: 184 SDFLTYKSGVYKHEA---GDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKIL 240
Query: 324 RGANACGIES 333
RG N CGIES
Sbjct: 241 RGENHCGIES 250
>pdb|1CTE|A Chain A, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
pdb|1CTE|B Chain B, Crystal Structures Of Recombinant Rat Cathepsin B And A
Cathepsin B-Inhibitor Complex: Implications For
Structure- Based Inhibitor Design
Length = 254
Score = 71.6 bits (174), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 103/250 (41%), Gaps = 48/250 (19%)
Query: 126 LPKSLDWRQ--SKVKVLNPVESQGRCGSCWAFATTAILESQVAL-------LKKTLYPLS 176
LP+S D R+ S + + QG CGSCWAF + ++ + ++ + L
Sbjct: 1 LPESFDAREQWSNCPTIAQIRDQGSCGSCWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 60
Query: 177 KSQLVECDHGNLNCNGGNIDVAFEYVKQYGLESQADY----------------------P 214
++C G CNGG A+ + + GL S Y P
Sbjct: 61 TCCGIQCGDG---CNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARP 117
Query: 215 YRNKENITFRC----------TYEKEKAKVFVQDTWVTSGVDHMMHLLQSGPI-GVYLNH 263
E T +C +Y+++K + + S + M + ++GP+ G +
Sbjct: 118 PCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVF 177
Query: 264 RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIE 323
+Y + HA+ I+G+G +NG+ W+V NSW D+G+F+I
Sbjct: 178 SDFLTYKSGVYKHEA---GDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKIL 234
Query: 324 RGANACGIES 333
RG N CGIES
Sbjct: 235 RGENHCGIES 244
>pdb|1PBH|A Chain A, Crystal Structure Of Human Recombinant Procathepsin B At
3.2 Angstrom Resolution
pdb|2PBH|A Chain A, Crystal Structure Of Human Procathepsin B At 3.3 Angstrom
Resolution
pdb|3PBH|A Chain A, Refined Crystal Structure Of Human Procathepsin B At 2.5
Angstrom Resolution
Length = 317
Score = 69.3 bits (168), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 103/251 (41%), Gaps = 50/251 (19%)
Query: 126 LPKSLDWRQ--SKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPL--SKSQLV 181
LP S D R+ + + + QG CGSCWAF + ++ + + S L+
Sbjct: 64 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 123
Query: 182 ECDHGNL---NCNGGNIDVAFEYVKQYGLESQADY----------------------PYR 216
C G++ CNGG A+ + + GL S Y P
Sbjct: 124 TC-CGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 182
Query: 217 NKENITFRC----------TYEKEKAKVFVQDTWVTSGVDHMMHLLQSGPI----GVYLN 262
E T +C TY+++K + + S D M + ++GP+ VY +
Sbjct: 183 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 242
Query: 263 HRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQI 322
L +S + HA+ I+G+G +NG W+V NSW D+G+F+I
Sbjct: 243 FLLYKSGVYQHVTGEMMG------GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKI 296
Query: 323 ERGANACGIES 333
RG + CGIES
Sbjct: 297 LRGQDHCGIES 307
>pdb|1GMY|A Chain A, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|B Chain B, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
pdb|1GMY|C Chain C, Cathepsin B Complexed With Dipeptidyl Nitrile Inhibitor
Length = 261
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 103/251 (41%), Gaps = 50/251 (19%)
Query: 126 LPKSLDWRQ--SKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPL--SKSQLV 181
LP S D R+ + + + QG CGSCWAF + ++ + + S L+
Sbjct: 2 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 61
Query: 182 ECDHGNL---NCNGGNIDVAFEYVKQYGLESQADY----------------------PYR 216
C G++ CNGG A+ + + GL S Y P
Sbjct: 62 TC-CGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 120
Query: 217 NKENITFRC----------TYEKEKAKVFVQDTWVTSGVDHMMHLLQSGPI----GVYLN 262
E T +C TY+++K + + S D M + ++GP+ VY +
Sbjct: 121 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 180
Query: 263 HRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQI 322
L +S + HA+ I+G+G +NG W+V NSW D+G+F+I
Sbjct: 181 FLLYKSGVYQHVTGEMMG------GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKI 234
Query: 323 ERGANACGIES 333
RG + CGIES
Sbjct: 235 LRGQDHCGIES 245
>pdb|3K9M|A Chain A, Cathepsin B In Complex With Stefin A
pdb|3K9M|B Chain B, Cathepsin B In Complex With Stefin A
Length = 254
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 103/251 (41%), Gaps = 50/251 (19%)
Query: 126 LPKSLDWRQ--SKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPL--SKSQLV 181
LP S D R+ + + + QG CGSCWAF + ++ + + S L+
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 60
Query: 182 ECDHGNL---NCNGGNIDVAFEYVKQYGLESQADY----------------------PYR 216
C G++ CNGG A+ + + GL S Y P
Sbjct: 61 TC-CGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 119
Query: 217 NKENITFRC----------TYEKEKAKVFVQDTWVTSGVDHMMHLLQSGPI----GVYLN 262
E T +C TY+++K + + S D M + ++GP+ VY +
Sbjct: 120 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 179
Query: 263 HRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQI 322
L +S + HA+ I+G+G +NG W+V NSW D+G+F+I
Sbjct: 180 FLLYKSGVYQHVTGEMMG------GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKI 233
Query: 323 ERGANACGIES 333
RG + CGIES
Sbjct: 234 LRGQDHCGIES 244
>pdb|3AI8|B Chain B, Cathepsin B In Complex With The Nitroxoline
pdb|3AI8|A Chain A, Cathepsin B In Complex With The Nitroxoline
Length = 256
Score = 68.9 bits (167), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 103/251 (41%), Gaps = 50/251 (19%)
Query: 126 LPKSLDWRQ--SKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPL--SKSQLV 181
LP S D R+ + + + QG CGSCWAF + ++ + + S L+
Sbjct: 3 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 62
Query: 182 ECDHGNL---NCNGGNIDVAFEYVKQYGLESQADY----------------------PYR 216
C G++ CNGG A+ + + GL S Y P
Sbjct: 63 TC-CGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEHHVNGSRPPC 121
Query: 217 NKENITFRC----------TYEKEKAKVFVQDTWVTSGVDHMMHLLQSGPI----GVYLN 262
E T +C TY+++K + + S D M + ++GP+ VY +
Sbjct: 122 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 181
Query: 263 HRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQI 322
L +S + HA+ I+G+G +NG W+V NSW D+G+F+I
Sbjct: 182 FLLYKSGVYQHVTGEMMG------GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKI 235
Query: 323 ERGANACGIES 333
RG + CGIES
Sbjct: 236 LRGQDHCGIES 246
>pdb|1MIR|A Chain A, Rat Procathepsin B
pdb|1MIR|B Chain B, Rat Procathepsin B
Length = 322
Score = 67.8 bits (164), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 48/250 (19%)
Query: 126 LPKSLDWRQ--SKVKVLNPVESQGRCGSCWAFATTAILESQVAL-------LKKTLYPLS 176
LP+S D R+ S + + QG CGS WAF + ++ + ++ + L
Sbjct: 63 LPESFDAREQWSNCPTIAQIRDQGSCGSSWAFGAVEAMSDRICIHTNGRVNVEVSAEDLL 122
Query: 177 KSQLVECDHGNLNCNGGNIDVAFEYVKQYGLESQADY----------------------P 214
++C G CNGG A+ + + GL S Y P
Sbjct: 123 TCCGIQCGDG---CNGGYPSGAWNFWTRKGLVSGGVYNSHIGCLPYTIPPCEHHVNGARP 179
Query: 215 YRNKENITFRC----------TYEKEKAKVFVQDTWVTSGVDHMMHLLQSGPI-GVYLNH 263
E T +C +Y+++K + + S + M + ++GP+ G +
Sbjct: 180 PCTGEGDTPKCNKMCEAGYSTSYKEDKHYGYTSYSVSDSEKEIMAEIYKNGPVEGAFTVF 239
Query: 264 RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIE 323
+Y + HA+ I+G+G +NG+ W+V NSW D+G+F+I
Sbjct: 240 SDFLTYKSGVYKHE---AGDVMGGHAIRILGWGIENGVPYWLVANSWNADWGDNGFFKIL 296
Query: 324 RGANACGIES 333
RG N CGIES
Sbjct: 297 RGENHCGIES 306
>pdb|3CBJ|A Chain A, Chagasin-cathepsin B Complex
pdb|3CBK|A Chain A, Chagasin-Cathepsin B
Length = 266
Score = 65.5 bits (158), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 102/251 (40%), Gaps = 50/251 (19%)
Query: 126 LPKSLDWRQ--SKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPL--SKSQLV 181
LP S D R+ + + + QG CGS WAF + ++ + + S L+
Sbjct: 7 LPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLL 66
Query: 182 ECDHGNL---NCNGGNIDVAFEYVKQYGLESQADY----------------------PYR 216
C G++ CNGG A+ + + GL S Y P
Sbjct: 67 TC-CGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPC 125
Query: 217 NKENITFRC----------TYEKEKAKVFVQDTWVTSGVDHMMHLLQSGPI----GVYLN 262
E T +C TY+++K + + S D M + ++GP+ VY +
Sbjct: 126 TGEGDTPKCSKICEPGYSPTYKQDKHYGYNSYSVSNSEKDIMAEIYKNGPVEGAFSVYSD 185
Query: 263 HRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQI 322
L +S + HA+ I+G+G +NG W+V NSW D+G+F+I
Sbjct: 186 FLLYKSGVYQHVTGEMMG------GHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKI 239
Query: 323 ERGANACGIES 333
RG + CGIES
Sbjct: 240 LRGQDHCGIES 250
>pdb|3QSD|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With Ca074 Inhibitor
pdb|3S3Q|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11017 Inhibitor
pdb|3S3R|A Chain A, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|B Chain B, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
pdb|3S3R|C Chain C, Structure Of Cathepsin B1 From Schistosoma Mansoni In
Complex With K11777 Inhibitor
Length = 254
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 107/255 (41%), Gaps = 58/255 (22%)
Query: 126 LPKSLDWRQ--SKVKVLNPVESQGRCGSCWAFATTAILESQVALLK--KTLYPLSKSQLV 181
+P S D R+ + K + + Q RCGSCWAF + + + K LS L+
Sbjct: 3 IPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLL 62
Query: 182 EC-DHGNLNCNGGNIDVAFEYVKQYGLESQAD---------YPYRNKEN----------- 220
C + L C GG + A++Y + G+ + + YP+ E+
Sbjct: 63 SCCESCGLGCEGGILGPAWDYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGS 122
Query: 221 ---ITFRC--TYEKEKAKVFVQDTWVTSGVDHMMH--------LLQSGPIGV-------Y 260
T RC T +K+ + QD ++ + +++ GP+ +
Sbjct: 123 KIYKTPRCKQTCQKKYKTPYTQDKHRGKSSYNVKNDEKAIQKEIMKYGPVEAGFTVYEDF 182
Query: 261 LNHR--LIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHG 318
LN++ + + G + HA+ I+G+G +N W++ NSW + ++G
Sbjct: 183 LNYKSGIYKHITGETLG-----------GHAIRIIGWGVENKAPYWLIANSWNEDWGENG 231
Query: 319 YFQIERGANACGIES 333
YF+I RG + C IES
Sbjct: 232 YFRIVRGRDECSIES 246
>pdb|1K3B|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJG|B Chain B, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
pdb|2DJF|B Chain B, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
Length = 164
Score = 61.2 bits (147), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 56/99 (56%), Gaps = 4/99 (4%)
Query: 126 LPKSLDWRQSK-VKVLNPVESQGRCGSCWAFATTAILESQVALL-KKTLYP-LSKSQLVE 182
LP S DWR + ++PV +Q CGSC++FA+ +LE+++ +L + P LS ++V
Sbjct: 1 LPTSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVS 60
Query: 183 CDHGNLNCNGG-NIDVAFEYVKQYGLESQADYPYRNKEN 220
C C GG +A +Y + +GL +A +PY ++
Sbjct: 61 CSQYAQGCEGGFPYLIAGKYAQDFGLVEEACFPYTGTDS 99
>pdb|1K3B|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C): Exclusion Domain Added To An
Endopeptidase Framework Creates The Machine For
Activation Of Granular Serine Proteases
pdb|2DJF|C Chain C, Crystal Structure Of Human Dipeptidyl Peptidase I
(Cathepsin C) In Complex With The Inhibitor Gly-Phe-Chn2
pdb|2DJG|C Chain C, Re-determination Of The Native Structure Of Human
Dipeptidyl Peptidase I (cathepsin C)
Length = 69
Score = 58.5 bits (140), Expect = 5e-09, Method: Composition-based stats.
Identities = 30/61 (49%), Positives = 41/61 (67%), Gaps = 3/61 (4%)
Query: 282 NPHKL-DHAVAIVGYG--EKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLA 338
NP +L +HAV +VGYG +G+ WIV+NSWG ++GYF+I RG + C IES A A
Sbjct: 4 NPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAA 63
Query: 339 S 339
+
Sbjct: 64 T 64
>pdb|1QDQ|A Chain A, X-Ray Crystal Structure Of Bovine Cathepsin B-Ca074
Complex
Length = 253
Score = 50.8 bits (120), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 288 HAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIES 333
HA+ I+G+G +NG W+V NSW D+G+F+I RG + CGIES
Sbjct: 199 HAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 244
Score = 35.4 bits (80), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 126 LPKSLDWRQ--SKVKVLNPVESQGRCGSCWAFATTAILESQVAL 167
LP+S D R+ + + QG CGSCWAF + ++ +
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICI 44
>pdb|1ITO|A Chain A, Crystal Structure Analysis Of Bovine Spleen Cathepsin B-
E64c Complex
pdb|2DC6|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca073 Complex
pdb|2DC7|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca042 Complex
pdb|2DC8|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca059 Complex
pdb|2DC9|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca074me Complex
pdb|2DCA|A Chain A, X-ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-ca075 Complex
pdb|2DCB|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca076 Complex
pdb|2DCC|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca077 Complex
pdb|2DCD|A Chain A, X-Ray Crystal Structure Analysis Of Bovine Spleen
Cathepsin B-Ca078 Complex
Length = 256
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 288 HAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIES 333
HA+ I+G+G +NG W+V NSW D+G+F+I RG + CGIES
Sbjct: 199 HAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 244
Score = 35.4 bits (80), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 126 LPKSLDWRQ--SKVKVLNPVESQGRCGSCWAFATTAILESQVAL 167
LP+S D R+ + + QG CGSCWAF + ++ +
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICI 44
>pdb|1HUC|B Chain B, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|D Chain D, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|B Chain B, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|E Chain E, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|B Chain B, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 205
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 288 HAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIES 333
HA+ I+G+G +NG W+V NSW D+G+F+I RG + CGIES
Sbjct: 150 HAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIES 195
>pdb|1SP4|B Chain B, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 205
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/46 (50%), Positives = 32/46 (69%)
Query: 288 HAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIES 333
HA+ I+G+G +NG W+V NSW D+G+F+I RG + CGIES
Sbjct: 151 HAIRILGWGVENGTPYWLVGNSWNTDWGDNGFFKILRGQDHCGIES 196
>pdb|2WBF|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum With Loop 690-700 Ordered
Length = 265
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 90/228 (39%), Gaps = 59/228 (25%)
Query: 143 VESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLN--CNGGNIDVAF- 199
VE QG C + W FA+ LE+ + +S + C G C+ G+ + F
Sbjct: 25 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 84
Query: 200 EYVKQYG-LESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVT---------------- 242
+ ++ YG L ++++YPY N + +C V+D W+
Sbjct: 85 QIIEDYGFLPAESNYPY-NYVKVGEQCPK--------VEDHWMNLWDNGKILHNKNEPNS 135
Query: 243 ---------------SGVDHMMHLLQS-----GPIGVYLNHRLIESYD--GNPIRRNDWA 280
+D + ++++ G + Y+ + Y+ G ++
Sbjct: 136 LDGKGYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVKN---L 192
Query: 281 CNPHKLDHAVAIVGYG-----EKNGILTWIVRNSWGDIGPDHGYFQIE 323
C DHAV IVGYG E WIVRNSWG D GYF+++
Sbjct: 193 CGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVD 240
>pdb|3CH2|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
pdb|3CH3|X Chain X, Crystal Structure Analysis Of Sera5e From Plasmodium
Falciparum
Length = 265
Score = 48.9 bits (115), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 90/226 (39%), Gaps = 55/226 (24%)
Query: 143 VESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLN--CNGGNIDVAF- 199
VE QG C + W FA+ LE+ + +S + C G C+ G+ + F
Sbjct: 24 VEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFL 83
Query: 200 EYVKQYG-LESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVT---------------- 242
+ ++ YG L ++++YPY N + +C V+D W+
Sbjct: 84 QIIEDYGFLPAESNYPY-NYVKVGEQCPK--------VEDHWMNLWDNGKILHNKNEPNS 134
Query: 243 ---------------SGVDHMMHLLQS-----GPIGVYLNHRLIESYDGNPIRRNDWACN 282
+D + ++++ G + Y+ + Y+ + + + C
Sbjct: 135 LDGKGYTAYESERFHDNMDAFVKIIKTEVMNKGSVIAYIKAENVMGYEFSGKKVQN-LCG 193
Query: 283 PHKLDHAVAIVGYG-----EKNGILTWIVRNSWGDIGPDHGYFQIE 323
DHAV IVGYG E WIVRNSWG D GYF+++
Sbjct: 194 DDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVD 239
>pdb|1HUC|A Chain A, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1HUC|C Chain C, The Refined 2.15 Angstroms X-Ray Crystal Structure Of
Human Liver Cathepsin B: The Structural Basis For Its
Specificity
pdb|1CSB|A Chain A, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|1CSB|D Chain D, Crystal Structure Of Cathepsin B Inhibited With Ca030 At
2.1 Angstroms Resolution: A Basis For The Design Of
Specific Epoxysuccinyl Inhibitors
pdb|2IPP|A Chain A, Crystal Structure Of The Tetragonal Form Of Human Liver
Cathepsin B
Length = 47
Score = 35.4 bits (80), Expect = 0.044, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 126 LPKSLDWRQS--KVKVLNPVESQGRCGSCWAFATTAILESQVAL 167
LP S D R+ + + + QG CGSCWAF + ++ +
Sbjct: 1 LPASFDAREQWPQCPTIKEIRDQGSCGSCWAFGAVEAISDRICI 44
>pdb|1SP4|A Chain A, Crystal Structure Of Ns-134 In Complex With Bovine
Cathepsin B: A Two Headed Epoxysuccinyl Inhibitor
Extends Along The Whole Active Site Cleft
Length = 48
Score = 35.4 bits (80), Expect = 0.051, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 126 LPKSLDWRQS--KVKVLNPVESQGRCGSCWAFATTAILESQVAL 167
LP+S D R+ + + QG CGSCWAF + ++ +
Sbjct: 1 LPESFDAREQWPNCPTIKEIRDQGSCGSCWAFGAVEAISDRICI 44
>pdb|3B21|A Chain A, Crystal Structure Of Ospi From Shigella Flexineri
Length = 220
Score = 33.9 bits (76), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 3/78 (3%)
Query: 87 SPQEILQRTGLRLTGKEKERLEADRERVKKFL---NERKKGPLPKSLDWRQSKVKVLNPV 143
SP+ ++ L+ T + E VKK L N + G + K + + K++NP
Sbjct: 5 SPEFMINGVSLQGTAGYEAHTEEGNVNVKKLLESLNSKSLGDMDKDSELAATLQKMINPS 64
Query: 144 ESQGRCGSCWAFATTAIL 161
G C C A A+L
Sbjct: 65 GGDGNCSGCALHACMAML 82
>pdb|3OIS|A Chain A, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|B Chain B, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|C Chain C, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
pdb|3OIS|D Chain D, Crystal Structure Xylellain, A Cysteine Protease From
Xylella Fastidiosa
Length = 291
Score = 33.5 bits (75), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 93/220 (42%), Gaps = 45/220 (20%)
Query: 135 SKVKVLNP--VESQGRCGSCWAFATTAILESQ-------VALLKKTLYPLSKSQLVECDH 185
KV + P V QGR GSC A A A ++ + + L+ + +E
Sbjct: 59 PKVDLTPPFQVYDQGRIGSCTANALAAAIQFERIHDKQSPEFIPSRLFIYYNERKIE--- 115
Query: 186 GNLNCN-GGNIDVAFEYVKQYGLESQADYPY-------RNKE---------NITFRCTYE 228
G++N + G I + + + G+ + ++PY R +E + +C +
Sbjct: 116 GHVNYDSGAMIRDGIKVLHKLGVCPEKEWPYGDTPADPRTEEFPPGAPASKKPSDQCYKD 175
Query: 229 KEKAKVFVQDTWVTSGVDHMMHLLQSGPIGVYLNHRLIESYDGN---PIRRNDWACNPHK 285
+ K+ + + V +DH+ L G V+ + S+ GN P+R P K
Sbjct: 176 AQNYKI-TEYSRVAQDIDHLKACLAVGSPFVF-GFSVYNSWVGNNSLPVR----IPLPTK 229
Query: 286 LD-----HAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYF 320
D HAV VGY ++ I + +RNSWG+ + GYF
Sbjct: 230 NDTLEGGHAVLCVGYDDE--IRHFRIRNSWGNNVGEDGYF 267
>pdb|3PW3|A Chain A, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|B Chain B, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|C Chain C, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|D Chain D, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|E Chain E, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
pdb|3PW3|F Chain F, Crystal Structure Of A Cysteine Protease (Bdi_2249) From
Parabacteroides Distasonis Atcc 8503 At 2.23 A
Resolution
Length = 383
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 140 LNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLV 181
+ V++Q R G+CW +++ + LES++ K Y LS+ V
Sbjct: 22 ITSVKNQNRAGTCWCYSSYSFLESELLRXGKGEYDLSEXFTV 63
>pdb|2VOA|A Chain A, Structure Of An Ap Endonuclease From Archaeoglobus
Fulgidus
pdb|2VOA|B Chain B, Structure Of An Ap Endonuclease From Archaeoglobus
Fulgidus
Length = 257
Score = 29.3 bits (64), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 112 ERVKKFLNERKKGPLPKSLDWRQSKVKVLNPVESQGRCGSCWA 154
ER+ F + R KG + + L WR + P+ RC C+A
Sbjct: 195 ERIYTFYDYRVKGAIERGLGWRGDAILATPPLAE--RCVDCYA 235
>pdb|3PAG|A Chain A, Crystal Structure Of The V130d Mutant Of Oxa-2440 IN
COMPLEX WITH Doripenem
pdb|3PAG|B Chain B, Crystal Structure Of The V130d Mutant Of Oxa-2440 IN
COMPLEX WITH Doripenem
Length = 245
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 57 DNEIKTRFEYFKQDGK-------ETDEYYGTSGSSDRSP--QEILQRTGLRLTGKEKERL 107
+N T E FK DGK E D G + + P QE+ +RTGL L KE +R+
Sbjct: 63 ENHKATTNEIFKWDGKKRTYPMWEKDMTLGEAMALSADPVYQELARRTGLELMQKEVKRV 122
>pdb|3S9E|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|3S9E|B Chain B, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With (S)-Glutamate
pdb|4E0W|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3 Ligand
Binding Domain In Complex With Kainate
pdb|4G8N|A Chain A, Crystal Structure Of The Kainate Receptor Gluk3
Ligand-Binding Domain In Complex With The Agonist G8m
Length = 258
Score = 29.3 bits (64), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 189 NCN----GGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSG 244
NCN GG ID K YG+ + PYR+K I E++K + + W SG
Sbjct: 202 NCNLTQIGGLIDS-----KGYGIGTPMGSPYRDKITIAILQLQEEDKLHIMKEKWWRGSG 256
>pdb|3U92|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U92|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Kainate And Zinc: P2221 Form
pdb|3U93|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U93|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P2221 Form
pdb|3U94|A Chain A, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|B Chain B, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|C Chain C, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
pdb|3U94|D Chain D, Crystal Structure Of The Gluk3 Ligand Binding Domain
Complex With Glutamate And Zinc: P21212 Form
Length = 257
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 9/60 (15%)
Query: 189 NCN----GGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSG 244
NCN GG ID K YG+ + PYR+K I E++K + + W SG
Sbjct: 200 NCNLTQIGGLIDS-----KGYGIGTPMGSPYRDKITIAILQLQEEDKLHIMKEKWWRGSG 254
>pdb|1Y6J|A Chain A, L-Lactate Dehydrogenase From Clostridium Thermocellum
Cth-1135
Length = 318
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 3/34 (8%)
Query: 89 QEILQRTGLRLTGKEKERLEADRERVKKFLNERK 122
QE+LQ LT +E+E L E+VKK LNE K
Sbjct: 286 QEVLQ---FNLTPEEEEALRFSAEQVKKVLNEVK 316
>pdb|3PAE|A Chain A, Crystal Structure Of The K84d Mutant Of Oxa-2440 IN
COMPLEX WITH Doripenem
pdb|3PAE|B Chain B, Crystal Structure Of The K84d Mutant Of Oxa-2440 IN
COMPLEX WITH Doripenem
Length = 245
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 57 DNEIKTRFEYFKQDGK-------ETDEYYGTSGSSDRSP--QEILQRTGLRLTGKEKERL 107
+N T E FK DGK E D G + + P QE+ +RTGL L KE +R+
Sbjct: 63 ENHKATTNEIFKWDGKKRTYPMWEKDMTLGEAMALSAVPVYQELARRTGLELMQKEVKRV 122
>pdb|3FV7|A Chain A, Oxa-24 Beta-Lactamase Complex With Sa4-44 Inhibitor
pdb|3FYZ|A Chain A, Oxa-24 Beta-Lactamase Complex With Sa4-17 Inhibitor
pdb|3FZC|A Chain A, Oxa-24 Beta-Lactamase Complex With Sa3-53 Inhibitor
pdb|3G4P|A Chain A, Oxa-24 Beta-Lactamase At Ph 7.5
pdb|3MBZ|A Chain A, Oxa-24 Beta-Lactamase Complex Soaked With 10mm Sa4-17
Inhibitor For 15min
Length = 244
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 57 DNEIKTRFEYFKQDGK-------ETDEYYGTSGSSDRSP--QEILQRTGLRLTGKEKERL 107
+N T E FK DGK E D G + + P QE+ +RTGL L KE +R+
Sbjct: 62 ENHKATTNEIFKWDGKKRTYPMWEKDMTLGEAMALSAVPVYQELARRTGLELMQKEVKRV 121
>pdb|2JC7|A Chain A, The Crystal Structure Of The Carbapenemase Oxa-24 Reveals
New Insights Into The Mechanism Of Carbapenem-Hydrolysis
Length = 244
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 9/60 (15%)
Query: 57 DNEIKTRFEYFKQDGK-------ETDEYYGTSGSSDRSP--QEILQRTGLRLTGKEKERL 107
+N T E FK DGK E D G + + P QE+ +RTGL L KE +R+
Sbjct: 62 ENHKATTNEIFKWDGKKRTYPMWEKDMTLGEAMALSAVPVYQELARRTGLELMQKEVKRV 121
>pdb|4D93|A Chain A, Crystal Structure Of Tep1s
pdb|4D93|B Chain B, Crystal Structure Of Tep1s
pdb|4D93|C Chain C, Crystal Structure Of Tep1s
Length = 1323
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 9/82 (10%)
Query: 116 KFLNERKKGPLPKSLDWRQSKVKVLNPVESQGR---CGSCWAFATTAILESQVALLKKTL 172
K++N+ + K+LDW SK S GR G W L + VAL L
Sbjct: 916 KYMNDIDAAMVEKALDWLASK------QHSSGRFDETGKVWHKDMQGGLRNGVALTSYVL 969
Query: 173 YPLSKSQLVECDHGNLNCNGGN 194
L ++ + + H + NG N
Sbjct: 970 TALLENDIAKVKHAVVIQNGMN 991
>pdb|2PMT|A Chain A, Glutathione Transferase From Proteus Mirabilis
pdb|2PMT|B Chain B, Glutathione Transferase From Proteus Mirabilis
pdb|2PMT|C Chain C, Glutathione Transferase From Proteus Mirabilis
pdb|2PMT|D Chain D, Glutathione Transferase From Proteus Mirabilis
pdb|1PMT|A Chain A, Glutathione Transferase From Proteus Mirabilis
Length = 203
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 78 YGTSGSSDRSPQEILQRTGLRLTGKEKERLEADRERVKKFLNERKKGPLP 127
Y T GS SP +L+ TGL + + + E K FL KG +P
Sbjct: 4 YYTPGSCSLSPHIVLRETGLDFSIERIDLRTKKTESGKDFLAINPKGQVP 53
>pdb|1ICF|B Chain B, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1ICF|D Chain D, Crystal Structure Of Mhc Class Ii Associated P41 Ii
Fragment In Complex With Cathepsin L
pdb|1MHW|C Chain C, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
pdb|1MHW|D Chain D, Design Of Non-covalent Inhibitors Of Human Cathepsin L.
From The 96- Residue Proregion To Optimized Tripeptides
Length = 42
Score = 28.1 bits (61), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Query: 304 WIVRNSWGDIGPDHGYFQIERG-ANACGIESYAYLASV 340
W+V+NSWG+ GY ++ + N CGI S A +V
Sbjct: 5 WLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 42
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,823,804
Number of Sequences: 62578
Number of extensions: 473355
Number of successful extensions: 1587
Number of sequences better than 100.0: 140
Number of HSP's better than 100.0 without gapping: 125
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1240
Number of HSP's gapped (non-prelim): 167
length of query: 341
length of database: 14,973,337
effective HSP length: 100
effective length of query: 241
effective length of database: 8,715,537
effective search space: 2100444417
effective search space used: 2100444417
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 52 (24.6 bits)