Query psy4960
Match_columns 341
No_of_seqs 254 out of 1759
Neff 7.7
Searched_HMMs 46136
Date Fri Aug 16 22:17:42 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4960.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/4960hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1542|consensus 100.0 1.4E-83 3E-88 590.4 21.8 298 31-340 59-371 (372)
2 PTZ00203 cathepsin L protease; 100.0 3.6E-76 7.7E-81 563.5 29.7 293 36-340 31-340 (348)
3 PTZ00021 falcipain-2; Provisio 100.0 5.3E-74 1.2E-78 564.2 28.4 297 34-341 160-489 (489)
4 PTZ00200 cysteine proteinase; 100.0 6.4E-73 1.4E-77 554.7 28.9 293 36-340 119-445 (448)
5 KOG1543|consensus 100.0 1.3E-66 2.9E-71 494.2 24.6 274 47-337 30-320 (325)
6 cd02621 Peptidase_C1A_Cathepsi 100.0 6.3E-59 1.4E-63 427.1 21.8 210 126-339 1-241 (243)
7 cd02698 Peptidase_C1A_Cathepsi 100.0 2E-58 4.3E-63 422.6 21.9 207 126-340 1-238 (239)
8 cd02620 Peptidase_C1A_Cathepsi 100.0 1.2E-58 2.6E-63 423.3 20.2 207 127-337 1-235 (236)
9 cd02248 Peptidase_C1A Peptidas 100.0 4.7E-58 1E-62 411.4 20.9 204 127-338 1-210 (210)
10 PF00112 Peptidase_C1: Papain 100.0 5E-56 1.1E-60 399.2 19.0 206 126-339 1-219 (219)
11 PTZ00049 cathepsin C-like prot 100.0 6.9E-55 1.5E-59 437.8 22.3 213 124-340 379-676 (693)
12 PTZ00364 dipeptidyl-peptidase 100.0 9.9E-55 2.2E-59 432.4 22.7 215 124-338 203-457 (548)
13 smart00645 Pept_C1 Papain fami 100.0 1.1E-50 2.4E-55 354.2 17.9 167 126-336 1-171 (174)
14 cd02619 Peptidase_C1 C1 Peptid 100.0 7.6E-47 1.7E-51 340.2 19.3 191 129-326 1-213 (223)
15 PTZ00462 Serine-repeat antigen 100.0 5.9E-46 1.3E-50 382.8 20.8 196 140-341 544-782 (1004)
16 KOG1544|consensus 100.0 3.4E-44 7.3E-49 326.1 5.9 254 79-338 167-458 (470)
17 COG4870 Cysteine protease [Pos 100.0 7.5E-30 1.6E-34 237.8 7.1 193 125-326 98-314 (372)
18 cd00585 Peptidase_C1B Peptidas 99.9 4.6E-25 9.9E-30 215.7 14.7 184 141-325 55-399 (437)
19 PF03051 Peptidase_C1_2: Pepti 99.8 4.4E-18 9.6E-23 166.7 13.8 183 141-324 56-399 (438)
20 PF08246 Inhibitor_I29: Cathep 99.4 1.6E-13 3.4E-18 97.9 5.8 49 43-91 1-58 (58)
21 smart00848 Inhibitor_I29 Cathe 99.2 1.8E-11 4E-16 86.7 3.7 48 43-90 1-57 (57)
22 COG3579 PepC Aminopeptidase C 99.1 3.1E-10 6.7E-15 105.3 8.1 183 141-323 58-400 (444)
23 KOG4128|consensus 97.6 1.1E-05 2.4E-10 75.3 -0.2 76 141-216 63-169 (457)
24 PF05543 Peptidase_C47: Stapho 96.4 0.044 9.5E-07 47.3 10.5 117 145-311 18-145 (175)
25 PF13529 Peptidase_C39_2: Pept 96.3 0.025 5.3E-07 46.3 8.3 52 246-310 91-144 (144)
26 PF09778 Guanylate_cyc_2: Guan 83.6 3.4 7.4E-05 37.1 6.3 64 243-308 111-180 (212)
27 PF14399 Transpep_BrtH: NlpC/p 80.0 4.1 8.9E-05 38.3 6.0 53 247-308 81-133 (317)
28 PF12385 Peptidase_C70: Papain 76.2 37 0.00081 29.1 9.8 34 247-297 101-134 (166)
29 PF08127 Propeptide_C1: Peptid 73.6 3.8 8.1E-05 26.8 2.6 32 67-99 5-38 (41)
30 cd02549 Peptidase_C39A A sub-f 68.8 13 0.00029 30.0 5.7 45 247-310 70-114 (141)
31 COG4990 Uncharacterized protei 66.0 10 0.00022 33.2 4.3 44 246-311 125-168 (195)
32 cd00044 CysPc Calpains, domain 65.0 11 0.00024 35.8 5.0 42 285-326 234-303 (315)
33 smart00230 CysPc Calpain-like 34.0 72 0.0016 30.4 5.0 28 285-312 226-255 (318)
34 KOG4702|consensus 25.6 1.3E+02 0.0028 22.0 3.8 33 40-73 28-60 (77)
35 PF01640 Peptidase_C10: Peptid 24.7 2.6E+02 0.0057 24.3 6.6 48 247-321 143-192 (192)
36 cd03527 RuBisCO_small Ribulose 21.6 73 0.0016 25.1 2.1 52 247-298 21-86 (99)
37 KOG4621|consensus 20.8 2.6E+02 0.0056 23.2 5.1 73 246-323 61-143 (167)
No 1
>KOG1542|consensus
Probab=100.00 E-value=1.4e-83 Score=590.37 Aligned_cols=298 Identities=36% Similarity=0.685 Sum_probs=265.5
Q ss_pred cccccchhHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHhhh---------hccccccCCCCCHHHHHHh-ccccCC
Q psy4960 31 DLAYDSIKQVDAFKTYIVKWNRTYTDDNEIKTRFEYFKQDGKETD---------EYYGTSGSSDRSPQEILQR-TGLRLT 100 (341)
Q Consensus 31 ~~~~~~~~~~~~f~~f~~~~~K~Y~~~~e~~~R~~iF~~n~~~I~---------~~yg~N~fsD~t~eE~~~~-l~~~~~ 100 (341)
++....+..++.|..|+.+|+|+|.+.+|...|+.||+.|++.++ +.||+|+|||||+|||+++ |+.+..
T Consensus 59 ~~~~~~l~~~~~F~~F~~kf~r~Y~s~eE~~~Rl~iF~~N~~~a~~~q~~d~gsA~yGvtqFSDlT~eEFkk~~l~~~~~ 138 (372)
T KOG1542|consen 59 DLNPRGLGLEDSFKLFTIKFGRSYASREEHAHRLSIFKHNLLRAERLQENDPGSAEYGVTQFSDLTEEEFKKIYLGVKRR 138 (372)
T ss_pred ccCCcccchHHHHHHHHHhcCcccCcHHHHHHHHHHHHHHHHHHHHhhhcCccccccCccchhhcCHHHHHHHhhccccc
Confidence 556666667899999999999999999999999999999999997 5679999999999999999 654442
Q ss_pred CchhhhhhhhhhhhhhhhcccCCCCCCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHH
Q psy4960 101 GKEKERLEADRERVKKFLNERKKGPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQL 180 (341)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l 180 (341)
... ........+ ..+..+||++||||++| .||||||||+||||||||+++++|++++|++|+.++||||+|
T Consensus 139 ~~~---~~~~~~~~~----~~~~~~lP~~fDWR~kg--aVTpVKnQG~CGSCWAFS~tG~vEga~~i~~g~LvsLSEQeL 209 (372)
T KOG1542|consen 139 GSK---LPGDAAEAP----IEPGESLPESFDWRDKG--AVTPVKNQGMCGSCWAFSTTGAVEGAWAIATGKLVSLSEQEL 209 (372)
T ss_pred ccc---CccccccCc----CCCCCCCCcccchhccC--CccccccCCcCcchhhhhhhhhhhhHHHhhcCcccccchhhh
Confidence 110 000000000 12345699999999999 999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCCCCCCcHHHHHHHHHHc-CCCCCCCCCCcCCCCCccccccccccceeeeccceeechH--H-HHHHHHhcCC
Q psy4960 181 VECDHGNLNCNGGNIDVAFEYVKQY-GLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV--D-HMMHLLQSGP 256 (341)
Q Consensus 181 ~dc~~~~~gC~GG~~~~a~~~~~~~-Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~--d-ik~~l~~~gP 256 (341)
+||+..++||+||.+..|++|+++. |+..|.+|||.++.+. .|...+....+.|++ |..++. + |.+.|.++||
T Consensus 210 vDCD~~d~gC~GGl~~nA~~~~~~~gGL~~E~dYPY~g~~~~--~C~~~~~~~~v~I~~-f~~l~~nE~~ia~wLv~~GP 286 (372)
T KOG1542|consen 210 VDCDSCDNGCNGGLMDNAFKYIKKAGGLEKEKDYPYTGKKGN--QCHFDKSKIVVSIKD-FSMLSNNEDQIAAWLVTFGP 286 (372)
T ss_pred hcccCcCCcCCCCChhHHHHHHHHhCCccccccCCccccCCC--ccccchhhceEEEec-cEecCCCHHHHHHHHHhcCC
Confidence 9999999999999999999997666 9999999999998774 899999999999999 999987 3 9999999999
Q ss_pred eEEEEeccccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecC-CeeEEEEEcCCCCCCCCCcEEEEEeCCCcccccCce
Q psy4960 257 IGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKN-GILTWIVRNSWGDIGPDHGYFQIERGANACGIESYA 335 (341)
Q Consensus 257 v~v~~~~~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~-g~~ywivkNSWG~~WG~~GY~~i~r~~n~Cgi~~~~ 335 (341)
|+|+|++..++.|++||+.+....|++..++|||+|||||... .++|||||||||++|||+||+||.||.|.|||++++
T Consensus 287 i~vgiNa~~mQ~YrgGV~~P~~~~Cs~~~~~HaVLlvGyG~~g~~~PYWIVKNSWG~~WGE~GY~~l~RG~N~CGi~~mv 366 (372)
T KOG1542|consen 287 LSVGINAKPMQFYRGGVSCPSKYICSPKLLNHAVLLVGYGSSGYEKPYWIVKNSWGTSWGEKGYYKLCRGSNACGIADMV 366 (372)
T ss_pred eEEEEchHHHHHhcccccCCCcccCCccccCceEEEEeecCCCCCCceEEEECCccccccccceEEEeccccccccccch
Confidence 9999999999999999999977799988899999999999887 899999999999999999999999999999999999
Q ss_pred eEEee
Q psy4960 336 YLASV 340 (341)
Q Consensus 336 ~~~~~ 340 (341)
..+++
T Consensus 367 ss~~v 371 (372)
T KOG1542|consen 367 SSAAV 371 (372)
T ss_pred hhhhc
Confidence 98875
No 2
>PTZ00203 cathepsin L protease; Provisional
Probab=100.00 E-value=3.6e-76 Score=563.54 Aligned_cols=293 Identities=27% Similarity=0.509 Sum_probs=242.7
Q ss_pred chhHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHhhh------hcc--ccccCCCCCHHHHHHh-ccccC-CCchhh
Q psy4960 36 SIKQVDAFKTYIVKWNRTYTDDNEIKTRFEYFKQDGKETD------EYY--GTSGSSDRSPQEILQR-TGLRL-TGKEKE 105 (341)
Q Consensus 36 ~~~~~~~f~~f~~~~~K~Y~~~~e~~~R~~iF~~n~~~I~------~~y--g~N~fsD~t~eE~~~~-l~~~~-~~~~~~ 105 (341)
..++..+|++|+++|+|.|.+.+|+.+|+.||++|+++|+ .+| |+|+|+|||+|||+++ ++... ....+.
T Consensus 31 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~~~lg~N~FaDlT~eEf~~~~l~~~~~~~~~~~ 110 (348)
T PTZ00203 31 GTPAAALFEEFKRTYQRAYGTLTEEQQRLANFERNLELMREHQARNPHARFGITKFFDLSEAEFAARYLNGAAYFAAAKQ 110 (348)
T ss_pred ccHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHHHHHHHhccCCCeEEeccccccCCHHHHHHHhcCCCcccccccc
Confidence 3445678999999999999998888899999999999999 256 9999999999999976 43211 110000
Q ss_pred hhhhhhhhhhhhhcccCCCCCCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCC
Q psy4960 106 RLEADRERVKKFLNERKKGPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185 (341)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~ 185 (341)
. ....... ......+||++||||++| +|+||||||.||||||||++++||+++++++++.+.||+|+|+||+.
T Consensus 111 ~-~~~~~~~----~~~~~~~lP~~~DWR~~g--~VtpVkdQg~CGSCWAfa~~~aiEs~~~i~~~~~~~LSeQqLvdC~~ 183 (348)
T PTZ00203 111 H-AGQHYRK----ARADLSAVPDAVDWREKG--AVTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDH 183 (348)
T ss_pred c-ccccccc----cccccccCCCCCcCCcCC--CCCCccccCCCccHHHHhhHHHHHHHHHHhcCCCccCCHHHHHhccC
Confidence 0 0000000 011123589999999999 99999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCcHHHHHHHHHHc---CCCCCCCCCCcCCCCCccccccccc-cceeeeccceeechH--H-HHHHHHhcCCeE
Q psy4960 186 GNLNCNGGNIDVAFEYVKQY---GLESQADYPYRNKENITFRCTYEKE-KAKVFVQDTWVTSGV--D-HMMHLLQSGPIG 258 (341)
Q Consensus 186 ~~~gC~GG~~~~a~~~~~~~---Gi~~e~~yPY~~~~~~~~~C~~~~~-~~~~~i~~~y~~~~~--d-ik~~l~~~gPv~ 258 (341)
.+.||+||++..|++|++++ |+++|++|||.+..+..+.|..... ...+++.+ |..++. + |+.+|++.|||+
T Consensus 184 ~~~GC~GG~~~~a~~yi~~~~~ggi~~e~~YPY~~~~~~~~~C~~~~~~~~~~~i~~-~~~i~~~e~~~~~~l~~~GPv~ 262 (348)
T PTZ00203 184 VDNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDG-YVSMESSERVMAAWLAKNGPIS 262 (348)
T ss_pred CCCCCCCCCHHHHHHHHHHhcCCCCCccccCCCccCCCCCCcCCCCcccccceEecc-eeecCcCHHHHHHHHHhCCCEE
Confidence 78899999999999999864 5899999999987664446864332 23467888 887765 3 899999999999
Q ss_pred EEEeccccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCCCcccccCceeEE
Q psy4960 259 VYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLA 338 (341)
Q Consensus 259 v~~~~~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~n~Cgi~~~~~~~ 338 (341)
|+|++.+|++|++|||.. |....++|||+|||||+++|.+|||||||||++||++|||||+||.|.|||+++++.+
T Consensus 263 v~i~a~~f~~Y~~GIy~~----c~~~~~nHaVliVGYG~~~g~~YWiikNSWG~~WGe~GY~ri~rg~n~Cgi~~~~~~~ 338 (348)
T PTZ00203 263 IAVDASSFMSYHSGVLTS----CIGEQLNHGVLLVGYNMTGEVPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYPVSV 338 (348)
T ss_pred EEEEhhhhcCccCceeec----cCCCCCCeEEEEEEEecCCCceEEEEEcCCCCCcCcCceEEEEcCCCcccccceEEEE
Confidence 999998899999999964 7555689999999999888999999999999999999999999999999999998876
Q ss_pred ee
Q psy4960 339 SV 340 (341)
Q Consensus 339 ~~ 340 (341)
.|
T Consensus 339 ~~ 340 (348)
T PTZ00203 339 HV 340 (348)
T ss_pred ec
Confidence 53
No 3
>PTZ00021 falcipain-2; Provisional
Probab=100.00 E-value=5.3e-74 Score=564.24 Aligned_cols=297 Identities=29% Similarity=0.524 Sum_probs=246.5
Q ss_pred ccchhHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHhhh-------hcc--ccccCCCCCHHHHHHh-ccccCC-Cc
Q psy4960 34 YDSIKQVDAFKTYIVKWNRTYTDDNEIKTRFEYFKQDGKETD-------EYY--GTSGSSDRSPQEILQR-TGLRLT-GK 102 (341)
Q Consensus 34 ~~~~~~~~~f~~f~~~~~K~Y~~~~e~~~R~~iF~~n~~~I~-------~~y--g~N~fsD~t~eE~~~~-l~~~~~-~~ 102 (341)
-..++...+|++|+.+|+|+|.+.+|+..|+.||++|+++|+ .+| |+|+|+|||+|||+.+ ++.... ..
T Consensus 160 ~~n~e~~~~F~~wk~ky~K~Y~~~eE~~~R~~iF~~Nl~~Ie~hN~~~~~ty~lgiNqFsDlT~EEF~~~~l~~~~~~~~ 239 (489)
T PTZ00021 160 MTNLENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGDLSFEEFKKKYLTLKSFDFK 239 (489)
T ss_pred ccChHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCEEEeccccccCCHHHHHHHhccccccccc
Confidence 445556778999999999999999999999999999999999 356 9999999999999987 543311 00
Q ss_pred hhhh-hhh-hhh--hhhhhhcccCCCCCCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChh
Q psy4960 103 EKER-LEA-DRE--RVKKFLNERKKGPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKS 178 (341)
Q Consensus 103 ~~~~-~~~-~~~--~~~~~~~~~~~~~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q 178 (341)
.... ... ... ....+. ......+|++||||+.| .|+||||||.||||||||++++||++++|+++..+.||+|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~P~s~DWR~~g--~VtpVKdQG~CGSCWAFAa~~alEs~~~I~~g~~v~LSeQ 316 (489)
T PTZ00021 240 SNGKKSPRVINYDDVIKKYK-PKDATFDHAKYDWRLHN--GVTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQ 316 (489)
T ss_pred cccccccccccccccccccc-cccccCCccccccccCC--CCCCcccccccccHHHHHHHHHHHHHHHHHcCCCcccCHH
Confidence 0000 000 000 000000 00011249999999999 9999999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCCCCCcHHHHHHHHHHc-CCCCCCCCCCcCCC-CCccccccccccceeeeccceeechH-HHHHHHHhcC
Q psy4960 179 QLVECDHGNLNCNGGNIDVAFEYVKQY-GLESQADYPYRNKE-NITFRCTYEKEKAKVFVQDTWVTSGV-DHMMHLLQSG 255 (341)
Q Consensus 179 ~l~dc~~~~~gC~GG~~~~a~~~~~~~-Gi~~e~~yPY~~~~-~~~~~C~~~~~~~~~~i~~~y~~~~~-dik~~l~~~g 255 (341)
+|+||+..+.||+||++..|+.|+.+. ||++|++|||.+.. + .|........+++.+ |..++. +|+.+|+..|
T Consensus 317 qLVDCs~~n~GC~GG~~~~Af~yi~~~gGl~tE~~YPY~~~~~~---~C~~~~~~~~~~i~~-y~~i~~~~lk~al~~~G 392 (489)
T PTZ00021 317 ELVDCSFKNNGCYGGLIPNAFEDMIELGGLCSEDDYPYVSDTPE---LCNIDRCKEKYKIKS-YVSIPEDKFKEAIRFLG 392 (489)
T ss_pred HHhhhccCCCCCCCcchHhhhhhhhhccccCcccccCccCCCCC---ccccccccccceeee-EEEecHHHHHHHHHhcC
Confidence 999999888999999999999999877 99999999999863 5 798765566688999 998887 5999999999
Q ss_pred CeEEEEec-cccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecC----------CeeEEEEEcCCCCCCCCCcEEEEEe
Q psy4960 256 PIGVYLNH-RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKN----------GILTWIVRNSWGDIGPDHGYFQIER 324 (341)
Q Consensus 256 Pv~v~~~~-~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~----------g~~ywivkNSWG~~WG~~GY~~i~r 324 (341)
||+|+|++ .+|++|++|||++ .|+. .++|||+|||||+++ +.+|||||||||++|||+|||||+|
T Consensus 393 PVsv~i~a~~~f~~YkgGIy~~---~C~~-~~nHAVlIVGYG~e~~~~~~~~~~~~~~YWIVKNSWGt~WGE~GY~rI~r 468 (489)
T PTZ00021 393 PISVSIAVSDDFAFYKGGIFDG---ECGE-EPNHAVILVGYGMEEIYNSDTKKMEKRYYYIIKNSWGESWGEKGFIRIET 468 (489)
T ss_pred CeEEEEEeecccccCCCCcCCC---CCCC-ccceEEEEEEecCcCCcccccccCCCCCEEEEECCCCCCcccCeEEEEEc
Confidence 99999999 8999999999986 6865 489999999999653 2479999999999999999999999
Q ss_pred CC----CcccccCceeEEeeC
Q psy4960 325 GA----NACGIESYAYLASVK 341 (341)
Q Consensus 325 ~~----n~Cgi~~~~~~~~~~ 341 (341)
+. |+|||++.+.+|++.
T Consensus 469 ~~~g~~n~CGI~t~a~yP~~~ 489 (489)
T PTZ00021 469 DENGLMKTCSLGTEAYVPLIE 489 (489)
T ss_pred CCCCCCCCCCCcccceeEecC
Confidence 96 589999999999874
No 4
>PTZ00200 cysteine proteinase; Provisional
Probab=100.00 E-value=6.4e-73 Score=554.68 Aligned_cols=293 Identities=29% Similarity=0.532 Sum_probs=240.3
Q ss_pred chhHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHhhh-----hcc--ccccCCCCCHHHHHHh-ccccCCCchhh--
Q psy4960 36 SIKQVDAFKTYIVKWNRTYTDDNEIKTRFEYFKQDGKETD-----EYY--GTSGSSDRSPQEILQR-TGLRLTGKEKE-- 105 (341)
Q Consensus 36 ~~~~~~~f~~f~~~~~K~Y~~~~e~~~R~~iF~~n~~~I~-----~~y--g~N~fsD~t~eE~~~~-l~~~~~~~~~~-- 105 (341)
+.+...+|++|+++|+|.|.+.+|+..|+.||++|++.|+ .+| |+|+|+|||+|||.++ ++...+.....
T Consensus 119 e~e~~~~F~~f~~ky~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~~~y~lgiN~FsDlT~eEF~~~~~~~~~~~~~~~~~ 198 (448)
T PTZ00200 119 EFEVYLEFEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKGDEPYSKEINKFSDLTEEEFRKLFPVIKVPPKSNSTS 198 (448)
T ss_pred hHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHhcCcCCeEEeccccccCCHHHHHHHhccCCCcccccccc
Confidence 3445678999999999999999999999999999999999 466 9999999999999887 44332211000
Q ss_pred hhhhhh---hhhhhhhc----------cc--CCCCCCCeeeccccCccccccccccC-CccchHHHHHHHHHHHHHHHHh
Q psy4960 106 RLEADR---ERVKKFLN----------ER--KKGPLPKSLDWRQSKVKVLNPVESQG-RCGSCWAFATTAILESQVALLK 169 (341)
Q Consensus 106 ~~~~~~---~~~~~~~~----------~~--~~~~lP~~~Dwr~~g~~~v~pV~dQg-~cGsCwAfA~~~~le~~~~~~~ 169 (341)
...... .....+.. +. ....+|++||||+.| .|+|||||| .||||||||+++++|+++++++
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~DWR~~g--~vtpVkdQG~~CGSCWAFat~~aiEs~~~i~~ 276 (448)
T PTZ00200 199 HNNDFKARHVSNPTYLKNLKKAKNTDEDVKDPSKITGEGLDWRRAD--AVTKVKDQGLNCGSCWAFSSVGSVESLYKIYR 276 (448)
T ss_pred cccccccccccccccccccccccccccccccccccCCCCccCCCCC--CCCCcccCCCccchHHHHhHHHHHHHHHHHhc
Confidence 000000 00000000 00 011269999999999 999999999 9999999999999999999999
Q ss_pred CCCCcCChhHHhhcCCCCCCCCCCcHHHHHHHHHHcCCCCCCCCCCcCCCCCccccccccccceeeeccceeechH-H-H
Q psy4960 170 KTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV-D-H 247 (341)
Q Consensus 170 ~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~-d-i 247 (341)
+..+.||+|+|+||+..+.||+||++..|++|++++||++|++|||.+..+ .|.... ...++|.+ |..++. + +
T Consensus 277 ~~~~~LSeQqLvDC~~~~~GC~GG~~~~A~~yi~~~Gi~~e~~YPY~~~~~---~C~~~~-~~~~~i~~-y~~~~~~~~l 351 (448)
T PTZ00200 277 DKSVDLSEQELVNCDTKSQGCSGGYPDTALEYVKNKGLSSSSDVPYLAKDG---KCVVSS-TKKVYIDS-YLVAKGKDVL 351 (448)
T ss_pred CCCeecCHHHHhhccCccCCCCCCcHHHHHHHHhhcCccccccCCCCCCCC---CCcCCC-CCeeEecc-eEecCHHHHH
Confidence 999999999999999878999999999999999989999999999999888 897644 33466888 887765 5 5
Q ss_pred HHHHHhcCCeEEEEec-cccccCCCCcccCCCCCCCCCCCCeEEEEEEEee--cCCeeEEEEEcCCCCCCCCCcEEEEEe
Q psy4960 248 MMHLLQSGPIGVYLNH-RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGE--KNGILTWIVRNSWGDIGPDHGYFQIER 324 (341)
Q Consensus 248 k~~l~~~gPv~v~~~~-~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~--~~g~~ywivkNSWG~~WG~~GY~~i~r 324 (341)
+.++ ..|||+|+|++ .+|+.|++|||.+ .|+. .++|||+|||||. ++|.+|||||||||++||++|||||+|
T Consensus 352 ~~~l-~~GPV~v~i~~~~~f~~Yk~GIy~~---~C~~-~~nHaV~lVGyG~d~~~g~~YWIIkNSWG~~WGe~GY~ri~r 426 (448)
T PTZ00200 352 NKSL-VISPTVVYIAVSRELLKYKSGVYNG---ECGK-SLNHAVLLVGEGYDEKTKKRYWIIKNSWGTDWGENGYMRLER 426 (448)
T ss_pred HHHH-hcCCEEEEeecccccccCCCCcccc---ccCC-CCcEEEEEEEecccCCCCCceEEEEcCCCCCcccCeeEEEEe
Confidence 5555 58999999999 8999999999987 6865 4899999999994 468899999999999999999999999
Q ss_pred C---CCcccccCceeEEee
Q psy4960 325 G---ANACGIESYAYLASV 340 (341)
Q Consensus 325 ~---~n~Cgi~~~~~~~~~ 340 (341)
+ .|.|||++.+.+|++
T Consensus 427 ~~~g~n~CGI~~~~~~P~~ 445 (448)
T PTZ00200 427 TNEGTDKCGILTVGLTPVF 445 (448)
T ss_pred CCCCCCcCCccccceeeEE
Confidence 6 489999999999986
No 5
>KOG1543|consensus
Probab=100.00 E-value=1.3e-66 Score=494.16 Aligned_cols=274 Identities=34% Similarity=0.624 Sum_probs=235.9
Q ss_pred HHHhCCccCChHHHHHHHHHHHHHHHhhh-------hcc--ccccCCCCCHHHHHHh-ccccCCCchhhhhhhhhhhhhh
Q psy4960 47 IVKWNRTYTDDNEIKTRFEYFKQDGKETD-------EYY--GTSGSSDRSPQEILQR-TGLRLTGKEKERLEADRERVKK 116 (341)
Q Consensus 47 ~~~~~K~Y~~~~e~~~R~~iF~~n~~~I~-------~~y--g~N~fsD~t~eE~~~~-l~~~~~~~~~~~~~~~~~~~~~ 116 (341)
+.+|.+.|.+..|+..|+.+|.+|++.|+ .+| |+|+|+|++.+|++.. ++.+.+.. ....
T Consensus 30 ~~~~~~~y~~~~~~~~r~~~f~~n~~~~~~~n~~~~~~~~~g~n~~~d~~~ee~~~~~~~~~~~~~-----~~~~----- 99 (325)
T KOG1543|consen 30 LVKFLKRYEDRVEKKARRAIFKENLQKIESHNLKYVLSFLMGVNQFADLTTEEFKRKKTGKKPPEI-----KRDK----- 99 (325)
T ss_pred hhhhccccccHHHHHHHHHHHHHHHHHHHhhhhhhceeeeeccccccccchHHHHHhhccccCccc-----cccc-----
Confidence 66777777777788899999999999888 455 9999999999999987 44433221 0000
Q ss_pred hhcccCCCCCCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhC-CCCcCChhHHhhcCCC-CCCCCCCc
Q psy4960 117 FLNERKKGPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKK-TLYPLSKSQLVECDHG-NLNCNGGN 194 (341)
Q Consensus 117 ~~~~~~~~~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~-~~~~lS~q~l~dc~~~-~~gC~GG~ 194 (341)
+.......+||++||||++| ..++||||||.||||||||++++||++++|.++ ..+.||+|+|+||+.. +.||.||.
T Consensus 100 ~~~~~~~~~~p~s~DwR~~~-~~~~~vkdQg~CgsCWAFaa~~aie~~~~i~~g~~l~sLSeq~lvdC~~~~~~GC~GG~ 178 (325)
T KOG1543|consen 100 FTEKLDGDDLPDSFDWRDKG-AVTPPVKDQGSCGSCWAFAATGALEDRYNIKTGGKLLSLSEQDLVDCCGECGDGCNGGE 178 (325)
T ss_pred cccccchhhCCCCccccccC-CcCCCcCCCCcCcchHHHHHHHHHHHHHHHHhCCccCccChhhhhhccCCCCCCcCCCC
Confidence 11122334699999999997 356669999999999999999999999999999 8999999999999974 88999999
Q ss_pred HHHHHHHHHHcCCCC-CCCCCCcCCCCCccccccccccceeeeccceeechH---HHHHHHHhcCCeEEEEec-cccccC
Q psy4960 195 IDVAFEYVKQYGLES-QADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV---DHMMHLLQSGPIGVYLNH-RLIESY 269 (341)
Q Consensus 195 ~~~a~~~~~~~Gi~~-e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~---dik~~l~~~gPv~v~~~~-~~f~~y 269 (341)
+..|++|+.++|+++ +.+|||.+..+ .|..........+.+ +..++. +|+.+|+.+|||+|+|++ .+|+.|
T Consensus 179 ~~~A~~yi~~~G~~t~~~~Ypy~~~~~---~C~~~~~~~~~~~~~-~~~~~~~e~~i~~~v~~~GPv~v~~~a~~~F~~Y 254 (325)
T KOG1543|consen 179 PKNAFKYIKKNGGVTECENYPYIGKDG---TCKSNKKDKTVTIKG-FYNVPANEEAIAEAVAKNGPVSVAIDAYEDFSLY 254 (325)
T ss_pred HHHHHHHHHHhCCCCCCcCCCCcCCCC---CccCCCccceeEeee-eeecCcCHHHHHHHHHhcCCeEEEEeehhhhhhc
Confidence 999999999998888 99999999999 999887766777888 777776 399999999999999999 999999
Q ss_pred CCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCCCcccccCceeE
Q psy4960 270 DGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYL 337 (341)
Q Consensus 270 ~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~n~Cgi~~~~~~ 337 (341)
++|||.+ ..|....++|||+|||||+.++.+|||||||||+.|||+|||||.|+.|.|+|++.+.+
T Consensus 255 ~~GVy~~--~~~~~~~~~Hav~iVGyG~~~~~~YWivkNSWG~~WGe~Gy~ri~r~~~~~~I~~~~~~ 320 (325)
T KOG1543|consen 255 KGGVYAE--EKGDDKEGDHAVLIVGYGTGDGVDYWIVKNSWGTDWGEKGYFRIARGVNKCGIASEASY 320 (325)
T ss_pred cCceEeC--CCCCCCCCCceEEEEEEcCCCCceeEEEEcCCCCCcccCceEEEecCCCchhhhccccc
Confidence 9999999 34433259999999999996678999999999999999999999999999999999998
No 6
>cd02621 Peptidase_C1A_CathepsinC Cathepsin C; also known as Dipeptidyl Peptidase I (DPPI), an atypical papain-like cysteine peptidase with chloride dependency and dipeptidyl aminopeptidase activity, resulting from its tetrameric structure which limits substrate access. Each subunit of the tetramer is composed of three peptides: the heavy and light chains, which together adopts the papain fold and forms the catalytic domain; and the residual propeptide region, which forms a beta barrel and points towards the substrate's N-terminus. The subunit composition is the result of the unique characteristic of procathepsin C maturation involving the cleavage of the catalytic domain and the non-autocatalytic excision of an activation peptide within its propeptide region. By removing N-terminal dipeptide extensions, cathepsin C activates granule serine peptidases (granzymes) involved in cell-mediated apoptosis, inflammation and tissue remodelling. Loss-of-function mutations in cathepsin C are assoc
Probab=100.00 E-value=6.3e-59 Score=427.06 Aligned_cols=210 Identities=31% Similarity=0.625 Sum_probs=180.8
Q ss_pred CCCeeeccccC--ccccccccccCCccchHHHHHHHHHHHHHHHHhCC------CCcCChhHHhhcCCCCCCCCCCcHHH
Q psy4960 126 LPKSLDWRQSK--VKVLNPVESQGRCGSCWAFATTAILESQVALLKKT------LYPLSKSQLVECDHGNLNCNGGNIDV 197 (341)
Q Consensus 126 lP~~~Dwr~~g--~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~------~~~lS~q~l~dc~~~~~gC~GG~~~~ 197 (341)
||++||||+.+ ..+|+||+|||.||||||||++++||++++|+++. .+.||+|+|+||+..+.||+||++..
T Consensus 1 lP~~fDwr~~~~~~~~v~~v~dQg~CGsCwAfa~~~~ies~~~i~~~~~~~~~~~~~lS~q~l~dC~~~~~GC~GG~~~~ 80 (243)
T cd02621 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSPQHVLSCSQYSQGCDGGFPFL 80 (243)
T ss_pred CCCcccccccCCCCcccccCCCCCcCccHHHHHHHHHHHHHHHHHhCCCCccccCcccCHHHhhhhcCCCCCCCCCCHHH
Confidence 79999999965 33899999999999999999999999999998776 78999999999998788999999999
Q ss_pred HHHHHHHcCCCCCCCCCCcC-CCCCcccccccc-ccceeeeccceeec------hH--HHHHHHHhcCCeEEEEec-ccc
Q psy4960 198 AFEYVKQYGLESQADYPYRN-KENITFRCTYEK-EKAKVFVQDTWVTS------GV--DHMMHLLQSGPIGVYLNH-RLI 266 (341)
Q Consensus 198 a~~~~~~~Gi~~e~~yPY~~-~~~~~~~C~~~~-~~~~~~i~~~y~~~------~~--dik~~l~~~gPv~v~~~~-~~f 266 (341)
|++|++++|+++|++|||.. ... .|.... ....+++.+ |..+ +. +|+++|+++|||+++|++ ++|
T Consensus 81 a~~~~~~~Gi~~e~~yPY~~~~~~---~C~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~ik~~i~~~GPv~v~~~~~~~F 156 (243)
T cd02621 81 VGKFAEDFGIVTEDYFPYTADDDR---PCKASPSECRRYYFSD-YNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSDF 156 (243)
T ss_pred HHHHHHhcCcCCCceeCCCCCCCC---CCCCCccccccccccc-eeEcccccccCCHHHHHHHHHHcCCEEEEEEecccc
Confidence 99999999999999999998 555 787654 334444554 4443 22 299999999999999999 899
Q ss_pred ccCCCCcccCCC--CCCCC--------CCCCeEEEEEEEeecC--CeeEEEEEcCCCCCCCCCcEEEEEeCCCcccccCc
Q psy4960 267 ESYDGNPIRRND--WACNP--------HKLDHAVAIVGYGEKN--GILTWIVRNSWGDIGPDHGYFQIERGANACGIESY 334 (341)
Q Consensus 267 ~~y~~Gv~~~~~--~~~~~--------~~~~Hav~iVGyg~~~--g~~ywivkNSWG~~WG~~GY~~i~r~~n~Cgi~~~ 334 (341)
.+|++|||+... ..|+. ..++|||+|||||++. +.+|||||||||++||++|||||+|+.|.|||++.
T Consensus 157 ~~Y~~GIy~~~~~~~~C~~~~~~~~~~~~~~HaV~iVGyg~~~~~g~~YWiirNSWG~~WGe~Gy~~i~~~~~~cgi~~~ 236 (243)
T cd02621 157 DFYKEGVYHHTDNDEVSDGDNDNFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQ 236 (243)
T ss_pred cccCCeEECcCCcccccccccccccCcccCCeEEEEEEeeccCCCCCcEEEEEcCCCCCCCcCCeEEEecCCcccCcccc
Confidence 999999998731 12532 2479999999999875 89999999999999999999999999999999999
Q ss_pred eeEEe
Q psy4960 335 AYLAS 339 (341)
Q Consensus 335 ~~~~~ 339 (341)
++++.
T Consensus 237 ~~~~~ 241 (243)
T cd02621 237 AVFAY 241 (243)
T ss_pred eEeec
Confidence 98764
No 7
>cd02698 Peptidase_C1A_CathepsinX Cathepsin X; the only papain-like lysosomal cysteine peptidase exhibiting carboxymonopeptidase activity. It can also act as a carboxydipeptidase, like cathepsin B, but has been shown to preferentially cleave substrates through a monopeptidyl carboxypeptidase pathway. The propeptide region of cathepsin X, the shortest among papain-like peptidases, is covalently attached to the active site cysteine in the inactive form of the enzyme. Little is known about the biological function of cathepsin X. Some studies point to a role in early tumorigenesis. A more recent study indicates that cathepsin X expression is restricted to immune cells suggesting a role in phagocytosis and the regulation of the immune response.
Probab=100.00 E-value=2e-58 Score=422.65 Aligned_cols=207 Identities=30% Similarity=0.615 Sum_probs=181.1
Q ss_pred CCCeeeccccC-ccccccccccC---CccchHHHHHHHHHHHHHHHHhC---CCCcCChhHHhhcCCCCCCCCCCcHHHH
Q psy4960 126 LPKSLDWRQSK-VKVLNPVESQG---RCGSCWAFATTAILESQVALLKK---TLYPLSKSQLVECDHGNLNCNGGNIDVA 198 (341)
Q Consensus 126 lP~~~Dwr~~g-~~~v~pV~dQg---~cGsCwAfA~~~~le~~~~~~~~---~~~~lS~q~l~dc~~~~~gC~GG~~~~a 198 (341)
||++||||+.+ .++|+|||||| .||||||||++++||++++|+++ ..+.||+|+|+||+. +.||+||++..|
T Consensus 1 lP~~~Dwr~~~~~~~v~~vk~Qg~~~~CGsCwAfa~~~aies~~~i~~~~~~~~~~lS~Q~lldC~~-~~gC~GG~~~~a 79 (239)
T cd02698 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQVVIDCAG-GGSCHGGDPGGV 79 (239)
T ss_pred CCCCcccccCCCCcccCccccCCCCCCCCcchHHHhHHHHHHHHHHHHCCCCCCcccCHHHHHhCCC-CCCccCcCHHHH
Confidence 69999999864 44899999998 89999999999999999999875 367899999999987 789999999999
Q ss_pred HHHHHHcCCCCCCCCCCcCCCCCcccccc---------------ccccceeeeccceeechH-H-HHHHHHhcCCeEEEE
Q psy4960 199 FEYVKQYGLESQADYPYRNKENITFRCTY---------------EKEKAKVFVQDTWVTSGV-D-HMMHLLQSGPIGVYL 261 (341)
Q Consensus 199 ~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~---------------~~~~~~~~i~~~y~~~~~-d-ik~~l~~~gPv~v~~ 261 (341)
++|++++|+++|++|||..... .|.. .+....+++.+ |..++. + |+++|.++|||+|+|
T Consensus 80 ~~~~~~~Gl~~e~~yPY~~~~~---~C~~~~~~~~c~~~~~c~~~~~~~~~~i~~-~~~~~~~~~i~~~l~~~GPV~v~i 155 (239)
T cd02698 80 YEYAHKHGIPDETCNPYQAKDG---ECNPFNRCGTCNPFGECFAIKNYTLYFVSD-YGSVSGRDKMMAEIYARGPISCGI 155 (239)
T ss_pred HHHHHHcCcCCCCeeCCcCCCC---CCcCCCCCCCcccCcccccccccceEEeee-ceecCCHHHHHHHHHHcCCEEEEE
Confidence 9999999999999999987655 4432 11223467777 877765 4 999999999999999
Q ss_pred ec-cccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecC-CeeEEEEEcCCCCCCCCCcEEEEEeCC-----CcccccCc
Q psy4960 262 NH-RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKN-GILTWIVRNSWGDIGPDHGYFQIERGA-----NACGIESY 334 (341)
Q Consensus 262 ~~-~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~-g~~ywivkNSWG~~WG~~GY~~i~r~~-----n~Cgi~~~ 334 (341)
.+ .+|+.|++|||+. ..| ...++|||+|||||+++ +.+|||||||||++||++|||||+|+. |+||||+.
T Consensus 156 ~~~~~f~~Y~~GIy~~--~~~-~~~~~HaV~IVGyG~~~~g~~YWiikNSWG~~WGe~Gy~~i~rg~~~~~~~~~~i~~~ 232 (239)
T cd02698 156 MATEALENYTGGVYKE--YVQ-DPLINHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEED 232 (239)
T ss_pred EecccccccCCeEEcc--CCC-CCcCCeEEEEEEEEecCCCCEEEEEEcCCCcccCcCceEEEEccCCcccccccccccc
Confidence 99 8999999999987 345 34689999999999876 999999999999999999999999999 99999999
Q ss_pred eeEEee
Q psy4960 335 AYLASV 340 (341)
Q Consensus 335 ~~~~~~ 340 (341)
++++..
T Consensus 233 ~~~~~~ 238 (239)
T cd02698 233 CAWADP 238 (239)
T ss_pred eEEEee
Confidence 999864
No 8
>cd02620 Peptidase_C1A_CathepsinB Cathepsin B group; composed of cathepsin B and similar proteins, including tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin B is a lysosomal papain-like cysteine peptidase which is expressed in all tissues and functions primarily as an exopeptidase through its carboxydipeptidyl activity. Together with other cathepsins, it is involved in the degradation of proteins, proenzyme activation, Ag processing, metabolism and apoptosis. Cathepsin B has been implicated in a number of human diseases such as cancer, rheumatoid arthritis, osteoporosis and Alzheimer's disease. The unique carboxydipeptidyl activity of cathepsin B is attributed to the presence of an occluding loop in its active site which favors the binding of the C-termini of substrate proteins. Some members of this group do not possess the occluding loop. TIN-Ag is an extracellular matrix basement protein which was originally identified as a target Ag involved in anti-tubular basement membrane
Probab=100.00 E-value=1.2e-58 Score=423.32 Aligned_cols=207 Identities=30% Similarity=0.544 Sum_probs=176.9
Q ss_pred CCeeeccccCcccc--ccccccCCccchHHHHHHHHHHHHHHHHhC--CCCcCChhHHhhcCCC-CCCCCCCcHHHHHHH
Q psy4960 127 PKSLDWRQSKVKVL--NPVESQGRCGSCWAFATTAILESQVALLKK--TLYPLSKSQLVECDHG-NLNCNGGNIDVAFEY 201 (341)
Q Consensus 127 P~~~Dwr~~g~~~v--~pV~dQg~cGsCwAfA~~~~le~~~~~~~~--~~~~lS~q~l~dc~~~-~~gC~GG~~~~a~~~ 201 (341)
|++||||+++.+++ +||+|||.||||||||++++||++++++++ +.+.||+|+|+||+.. +.||+||++..||+|
T Consensus 1 p~~~DwR~~~~~~~~v~~v~dQg~CGsCwAfa~~~~le~~~~i~~~~~~~~~LS~Q~lidC~~~~~~gC~GG~~~~a~~~ 80 (236)
T cd02620 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLSCCSGCGDGCNGGYPDAAWKY 80 (236)
T ss_pred CCcccchhhCCCCCCccccCCcccchhHHHHHHHHHHhhHHHHhcCCCCccccCHHHHHhhcCCCCCCCCCCCHHHHHHH
Confidence 88999999743354 599999999999999999999999999987 7899999999999976 789999999999999
Q ss_pred HHHcCCCCCCCCCCcCCCCC---------------cccccccc----ccceeeeccceeechH---HHHHHHHhcCCeEE
Q psy4960 202 VKQYGLESQADYPYRNKENI---------------TFRCTYEK----EKAKVFVQDTWVTSGV---DHMMHLLQSGPIGV 259 (341)
Q Consensus 202 ~~~~Gi~~e~~yPY~~~~~~---------------~~~C~~~~----~~~~~~i~~~y~~~~~---dik~~l~~~gPv~v 259 (341)
++++|+++|++|||...... +..|.... ....+++.. +..+.. +||.+|+++|||++
T Consensus 81 i~~~G~~~e~~yPY~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~-~~~~~~~~~~ik~~l~~~GPv~v 159 (236)
T cd02620 81 LTTTGVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQDGCEKTYEEDKHKGKS-AYSVPSDETDIMKEIMTNGPVQA 159 (236)
T ss_pred HHhcCCCcCCEecCcCCCCccCCCCCCCCCCCCCCCCCCCcCCccccceeeeeecc-eeeeCCHHHHHHHHHHHCCCeEE
Confidence 99999999999999876531 11354322 122345555 555543 39999999999999
Q ss_pred EEec-cccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCCCcccccCceeE
Q psy4960 260 YLNH-RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYL 337 (341)
Q Consensus 260 ~~~~-~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~n~Cgi~~~~~~ 337 (341)
+|.+ ++|+.|++|||.. .|+...++|||+|||||++++.+|||||||||++||++|||||+|+.|+|||++.++.
T Consensus 160 ~i~~~~~f~~Y~~Giy~~---~~~~~~~~HaV~iVGyg~~~g~~YWivrNSWG~~WGe~Gy~ri~~~~~~cgi~~~~~~ 235 (236)
T cd02620 160 AFTVYEDFLYYKSGVYQH---TSGKQLGGHAVKIIGWGVENGVPYWLAANSWGTDWGENGYFRILRGSNECGIESEVVA 235 (236)
T ss_pred EEEechhhhhcCCcEEee---cCCCCcCCeEEEEEEEeccCCeeEEEEEeCCCCCCCCCcEEEEEccCcccccccceec
Confidence 9999 8999999999986 3555568999999999988999999999999999999999999999999999998874
No 9
>cd02248 Peptidase_C1A Peptidase C1A subfamily (MEROPS database nomenclature); composed of cysteine peptidases (CPs) similar to papain, including the mammalian CPs (cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain is an endopeptidase with specific substrate preferences, primarily for bulky hydrophobic or aromatic residues at the S2 subsite, a hydrophobic pocket in papain that accommodates the P2 sidechain of the substrate (the second residue away from the scissile bond). Most members of the papain subfamily are endopeptidases. Some exceptions to this rule can be explained by specific details of the catalytic domains like the occluding loop in cathepsin B which confers an additional carboxydipeptidyl activity and the mini-chain of cathepsin H resulting in an N-terminal exopeptidase activity. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds. Parasitic CPs act extracellularly to help invade tissues and cells, to h
Probab=100.00 E-value=4.7e-58 Score=411.39 Aligned_cols=204 Identities=43% Similarity=0.814 Sum_probs=187.9
Q ss_pred CCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCCC-CCCCCCCcHHHHHHHHHHc
Q psy4960 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHG-NLNCNGGNIDVAFEYVKQY 205 (341)
Q Consensus 127 P~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~-~~gC~GG~~~~a~~~~~~~ 205 (341)
|++||||+.+ .++||+|||.||+|||||++++||++++++++....||+|+|++|... +.+|.||.+..|++++.+.
T Consensus 1 P~~~d~r~~~--~~~~v~dQg~cgsCwAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~gC~GG~~~~a~~~~~~~ 78 (210)
T cd02248 1 PESVDWREKG--AVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTSGNNGCNGGNPDNAFEYVKNG 78 (210)
T ss_pred CCcccCCcCC--CCCCCccCCCCcchHHhHHHHHHHHHHHHHcCCCcccCHHHHhccCCCCCCCCCCCCHHHhHHHHHHC
Confidence 7899999988 899999999999999999999999999999999999999999999975 7899999999999999999
Q ss_pred CCCCCCCCCCcCCCCCccccccccccceeeeccceeechH----HHHHHHHhcCCeEEEEec-cccccCCCCcccCCCCC
Q psy4960 206 GLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV----DHMMHLLQSGPIGVYLNH-RLIESYDGNPIRRNDWA 280 (341)
Q Consensus 206 Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~----dik~~l~~~gPv~v~~~~-~~f~~y~~Gv~~~~~~~ 280 (341)
|+++|++|||..... .|........+++.+ |..++. +||++|+++|||+++|.+ ++|..|++|||.. +.
T Consensus 79 Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~i~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~y~~Giy~~--~~ 152 (210)
T cd02248 79 GLASESDYPYTGKDG---TCKYNSSKVGAKITG-YSNVPPGDEEALKAALANYGPVSVAIDASSSFQFYKGGIYSG--PC 152 (210)
T ss_pred CcCccccCCccCCCC---CccCCCCcccEEEee-EEEcCCCcHHHHHHHHhhcCCEEEEEecCcccccCCCCceeC--CC
Confidence 999999999998766 898776667889999 888865 299999999999999999 8999999999988 34
Q ss_pred CCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCCCcccccCceeEE
Q psy4960 281 CNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLA 338 (341)
Q Consensus 281 ~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~n~Cgi~~~~~~~ 338 (341)
|....++|||+|||||++.+.+|||||||||++||++|||||+|+.|.|||++.+.+|
T Consensus 153 ~~~~~~~Hav~iVGy~~~~~~~ywiv~NSWG~~WG~~Gy~~i~~~~~~cgi~~~~~~~ 210 (210)
T cd02248 153 CSNTNLNHAVLLVGYGTENGVDYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYASYP 210 (210)
T ss_pred CCCCcCCEEEEEEEEeecCCceEEEEEcCCCCccccCcEEEEEcCCCccCceeeeecC
Confidence 5455689999999999988999999999999999999999999999999999888765
No 10
>PF00112 Peptidase_C1: Papain family cysteine protease This is family C1 in the peptidase classification. ; InterPro: IPR000668 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to the peptidase family C1, sub-family C1A (papain family, clan CA). It includes proteins classed as non-peptidase homologs. These are have either been shown experimentally to lack peptidase activity or lack one or more of the active site residues. The papain family has a wide variety of activities, including broad-range (papain) and narrow-range endo-peptidases, aminopeptidases, dipeptidyl peptidases and enzymes with both exo- and endo-peptidase activity []. Members of the papain family are widespread, found in baculovirus [], eubacteria, yeast, and practically all protozoa, plants and mammals []. The proteins are typically lysosomal or secreted, and proteolytic cleavage of the propeptide is required for enzyme activation, although bleomycin hydrolase is cytosolic in fungi and mammals []. Papain-like cysteine proteinases are essentially synthesised as inactive proenzymes (zymogens) with N-terminal propeptide regions. The activation process of these enzymes includes the removal of propeptide regions. The propeptide regions serve a variety of functions in vivo and in vitro. The pro-region is required for the proper folding of the newly synthesised enzyme, the inactivation of the peptidase domain and stabilisation of the enzyme against denaturing at neutral to alkaline pH conditions. Amino acid residues within the pro-region mediate their membrane association, and play a role in the transport of the proenzyme to lysosomes. Among the most notable features of propeptides is their ability to inhibit the activity of their cognate enzymes and that certain propeptides exhibit high selectivity for inhibition of the peptidases from which they originate []. The catalytic residues of papain are Cys-25 and His-159, other important residues being Gln-19, which helps form the 'oxyanion hole', and Asn-175, which orientates the imidazole ring of His-159. ; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 3MOR_B 3HHI_B 1S4V_A 3F75_A 1MEG_A 1PCI_C 1PPO_A 3HD3_B 1F29_A 1EWL_A ....
Probab=100.00 E-value=5e-56 Score=399.23 Aligned_cols=206 Identities=38% Similarity=0.687 Sum_probs=180.9
Q ss_pred CCCeeecccc-CccccccccccCCccchHHHHHHHHHHHHHHHHh-CCCCcCChhHHhhcCC-CCCCCCCCcHHHHHHHH
Q psy4960 126 LPKSLDWRQS-KVKVLNPVESQGRCGSCWAFATTAILESQVALLK-KTLYPLSKSQLVECDH-GNLNCNGGNIDVAFEYV 202 (341)
Q Consensus 126 lP~~~Dwr~~-g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~-~~~~~lS~q~l~dc~~-~~~gC~GG~~~~a~~~~ 202 (341)
||++||||+. + .++||+|||.||+|||||++++||++++++. ...+.||+|+|++|.. .+.+|+||++..|++++
T Consensus 1 lP~~~D~r~~~~--~~~~v~dQg~~gsCwafa~~~~~e~~~~~~~~~~~~~lS~q~l~~~~~~~~~~c~gg~~~~a~~~~ 78 (219)
T PF00112_consen 1 LPKSFDWRDKGG--RITPVRDQGSCGSCWAFAAAAALESRLAIQNNGKNVDLSEQYLIDCSNKYNKGCDGGSPFDALKYI 78 (219)
T ss_dssp STSSEEGGGTTT--CSG---BTTSSBTHHHHHHHHHHHHHHHHHHTSSCEEB-HHHHHHHSTGTSSTTBBBEHHHHHHHH
T ss_pred CCCCEecccCCC--CcCccccCCcccccccchhccceeccccccccccccccccccccccccccccccccCcccccceee
Confidence 7999999996 5 7999999999999999999999999999999 7899999999999997 57899999999999999
Q ss_pred HH-cCCCCCCCCCCcCCC-CCccccccccccc-eeeeccceeechH----HHHHHHHhcCCeEEEEec-c-ccccCCCCc
Q psy4960 203 KQ-YGLESQADYPYRNKE-NITFRCTYEKEKA-KVFVQDTWVTSGV----DHMMHLLQSGPIGVYLNH-R-LIESYDGNP 273 (341)
Q Consensus 203 ~~-~Gi~~e~~yPY~~~~-~~~~~C~~~~~~~-~~~i~~~y~~~~~----dik~~l~~~gPv~v~~~~-~-~f~~y~~Gv 273 (341)
++ .|+++|++|||.... . .|....... ..++.. |..+.. +|+++|.++|||++++.+ . +|..|++||
T Consensus 79 ~~~~Gi~~e~~~pY~~~~~~---~c~~~~~~~~~~~i~~-~~~~~~~~~~~ik~~L~~~gpV~~~~~~~~~~f~~~~~gi 154 (219)
T PF00112_consen 79 KNNNGIVTEEDYPYNGNENP---TCKSKKSNSYYVKIKG-YGKVKDNDIEDIKKALMKYGPVVASIDVSSEDFQNYKSGI 154 (219)
T ss_dssp HHHTSBEBTTTS--SSSSSC---SSCHSGGGEEEBEESE-EEEEESTCHHHHHHHHHHHSSEEEEEEEESHHHHTEESSE
T ss_pred cccCcccccccccccccccc---cccccccccccccccc-cccccccchhHHHHHHhhCceeeeeeecccccccccccee
Confidence 99 899999999999876 4 788654443 367787 877764 399999999999999999 6 699999999
Q ss_pred ccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCCC-cccccCceeEEe
Q psy4960 274 IRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGAN-ACGIESYAYLAS 339 (341)
Q Consensus 274 ~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~n-~Cgi~~~~~~~~ 339 (341)
|.. ..|....++|||+|||||++.+++|||||||||++||++||+||+|+.+ +|||++.+++|+
T Consensus 155 ~~~--~~~~~~~~~Hav~iVGy~~~~~~~~wiv~NSWG~~WG~~Gy~~i~~~~~~~c~i~~~~~~~~ 219 (219)
T PF00112_consen 155 YDP--PDCSNESGGHAVLIVGYDDENGKGYWIVKNSWGTDWGDNGYFRISYDYNNECGIESQAVYPI 219 (219)
T ss_dssp ECS--TSSSSSSEEEEEEEEEEEEETTEEEEEEE-SBTTTSTBTTEEEEESSSSSGGGTTSSEEEEE
T ss_pred eec--cccccccccccccccccccccceeeEeeehhhCCccCCCeEEEEeeCCCCcCccCceeeecC
Confidence 998 4676667999999999999999999999999999999999999999997 999999999997
No 11
>PTZ00049 cathepsin C-like protein; Provisional
Probab=100.00 E-value=6.9e-55 Score=437.84 Aligned_cols=213 Identities=29% Similarity=0.507 Sum_probs=177.4
Q ss_pred CCCCCeeeccccCc--cccccccccCCccchHHHHHHHHHHHHHHHHhCCC----------CcCChhHHhhcCCCCCCCC
Q psy4960 124 GPLPKSLDWRQSKV--KVLNPVESQGRCGSCWAFATTAILESQVALLKKTL----------YPLSKSQLVECDHGNLNCN 191 (341)
Q Consensus 124 ~~lP~~~Dwr~~g~--~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~----------~~lS~q~l~dc~~~~~gC~ 191 (341)
.+||++||||+..+ ..++||+|||.||||||||++++||++++|+++.. ..||+|+|+||+..+.||+
T Consensus 379 ~~LP~sfDWRd~~~~~~~vtpVkdQG~CGSCWAFAat~alEsR~~Ia~~~~l~~~~~~~~~~~LS~QqLLDCs~~nqGC~ 458 (693)
T PTZ00049 379 DELPKNFTWGDPFNNNTREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFYDQGCN 458 (693)
T ss_pred ccCCCCEecCcCCCCCCcccCCCCCccCcHHHHHHHHHHHHHHHHHHhccccccccccccccCcCHHHhcccCCCCCCcC
Confidence 46999999998521 17999999999999999999999999999986431 2799999999998889999
Q ss_pred CCcHHHHHHHHHHcCCCCCCCCCCcCCCCCccccccccc---------------------------------------cc
Q psy4960 192 GGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKE---------------------------------------KA 232 (341)
Q Consensus 192 GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~---------------------------------------~~ 232 (341)
||++..|++|+++.||++|++|||.+..+ .|..... ..
T Consensus 459 GG~~~~A~kya~~~GI~tEscYPY~a~~g---~C~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 535 (693)
T PTZ00049 459 GGFPYLVSKMAKLQGIPLDKVFPYTATEQ---TCPYQVDQSANSMNGSANLRQINAVFFSSETQSDMHADFEAPISSEPA 535 (693)
T ss_pred CCcHHHHHHHHHHCCCCcCCccCCcCCCC---CCCCCCCCcccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999988766 6653211 11
Q ss_pred eeeeccceeech----------H-HHHHHHHhcCCeEEEEec-cccccCCCCcccCCC----CCCCCC------------
Q psy4960 233 KVFVQDTWVTSG----------V-DHMMHLLQSGPIGVYLNH-RLIESYDGNPIRRND----WACNPH------------ 284 (341)
Q Consensus 233 ~~~i~~~y~~~~----------~-dik~~l~~~gPv~v~~~~-~~f~~y~~Gv~~~~~----~~~~~~------------ 284 (341)
++++++ |..++ . +|+++|+.+|||+|+|++ ++|++|++|||+... ..|...
T Consensus 536 r~y~k~-y~yI~g~y~~~~~~~E~~Im~eI~~~GPVsVsIda~~dF~~YksGVY~~~~~~h~~~C~~d~~~~~~~~~~~G 614 (693)
T PTZ00049 536 RWYAKD-YNYIGGCYGCNQCNGEKIMMNEIYRNGPIVASFEASPDFYDYADGVYYVEDFPHARRCTVDLPKHNGVYNITG 614 (693)
T ss_pred ceeeee-eEEecccccccCCCCHHHHHHHHHhcCCEEEEEEechhhhcCCCccccCcccccccccCCccccccccccccc
Confidence 234555 55542 2 399999999999999999 799999999998621 136321
Q ss_pred --CCCeEEEEEEEeec--CCe--eEEEEEcCCCCCCCCCcEEEEEeCCCcccccCceeEEee
Q psy4960 285 --KLDHAVAIVGYGEK--NGI--LTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLASV 340 (341)
Q Consensus 285 --~~~Hav~iVGyg~~--~g~--~ywivkNSWG~~WG~~GY~~i~r~~n~Cgi~~~~~~~~~ 340 (341)
..+|||+|||||.+ +|. +|||||||||++||++|||||+||.|.|||++.++++..
T Consensus 615 ~e~~NHAVlIVGwG~d~enG~~~~YWIVRNSWGt~WGenGYfKI~RG~N~CGIEs~a~~~~p 676 (693)
T PTZ00049 615 WEKVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQSLFIEP 676 (693)
T ss_pred cccCceEEEEEEeccccCCCcccCEEEEECCCCCCcccCceEEEEcCCCccCCccceeEEee
Confidence 36999999999964 453 799999999999999999999999999999999999864
No 12
>PTZ00364 dipeptidyl-peptidase I precursor; Provisional
Probab=100.00 E-value=9.9e-55 Score=432.39 Aligned_cols=215 Identities=21% Similarity=0.438 Sum_probs=179.6
Q ss_pred CCCCCeeeccccC-ccccccccccCC---ccchHHHHHHHHHHHHHHHHhC------CCCcCChhHHhhcCCCCCCCCCC
Q psy4960 124 GPLPKSLDWRQSK-VKVLNPVESQGR---CGSCWAFATTAILESQVALLKK------TLYPLSKSQLVECDHGNLNCNGG 193 (341)
Q Consensus 124 ~~lP~~~Dwr~~g-~~~v~pV~dQg~---cGsCwAfA~~~~le~~~~~~~~------~~~~lS~q~l~dc~~~~~gC~GG 193 (341)
.+||++||||+.+ .++|+||||||. ||||||||++++||++++|+++ ..+.||+|+|+||+..+.||+||
T Consensus 203 ~~LP~sfDWR~~gg~~~VtpVrdQg~~~~CGSCWAFAav~alEsr~~I~tn~~~~~g~~~~LS~QqLVDCs~~n~GCdGG 282 (548)
T PTZ00364 203 DPPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTFLSARHVLDCSQYGQGCAGG 282 (548)
T ss_pred cCCCCccccCcCCCCccCCCCcCCCCCCCCcCHHHHHHHHHHHHHHHHHhCCCcccCcccCcCHHHHhcccCCCCCCCCC
Confidence 4699999999975 347999999999 9999999999999999999873 46889999999999778999999
Q ss_pred cHHHHHHHHHHcCCCCCCCC--CCcCCCCCccccccccccceeeecc-----ceeechH---HHHHHHHhcCCeEEEEec
Q psy4960 194 NIDVAFEYVKQYGLESQADY--PYRNKENITFRCTYEKEKAKVFVQD-----TWVTSGV---DHMMHLLQSGPIGVYLNH 263 (341)
Q Consensus 194 ~~~~a~~~~~~~Gi~~e~~y--PY~~~~~~~~~C~~~~~~~~~~i~~-----~y~~~~~---dik~~l~~~gPv~v~~~~ 263 (341)
++..|++|++++||++|++| ||.+.++..+.|+.......+++.+ .|..+.. +|+.+|+++|||+|+|++
T Consensus 283 ~p~~A~~yi~~~GI~tE~dY~~PY~~~dg~~~~Ck~~~~~~~y~~~~~~~I~gyy~~~~~e~~I~~eI~~~GPVsVaIda 362 (548)
T PTZ00364 283 FPEEVGKFAETFGILTTDSYYIPYDSGDGVERACKTRRPSRRYYFTNYGPLGGYYGAVTDPDEIIWEIYRHGPVPASVYA 362 (548)
T ss_pred cHHHHHHHHHhCCcccccccCCCCCCCCCCCCCCCCCcccceeeeeeeEEecceeecCCcHHHHHHHHHHcCCeEEEEEe
Confidence 99999999999999999999 9987765334587654444444443 0333322 399999999999999999
Q ss_pred -cccccCCCCcccCC-----C-CCCC----------CCCCCeEEEEEEEee-cCCeeEEEEEcCCCC--CCCCCcEEEEE
Q psy4960 264 -RLIESYDGNPIRRN-----D-WACN----------PHKLDHAVAIVGYGE-KNGILTWIVRNSWGD--IGPDHGYFQIE 323 (341)
Q Consensus 264 -~~f~~y~~Gv~~~~-----~-~~~~----------~~~~~Hav~iVGyg~-~~g~~ywivkNSWG~--~WG~~GY~~i~ 323 (341)
.+|+.|++|||... . ..|. ...++|||+|||||+ ++|.+|||||||||+ +|||+|||||+
T Consensus 363 ~~df~~YksGiy~gi~~~~~~~~~~~~~~~~~~~~~~~~~nHAVlIVGYG~de~G~~YWIVKNSWGt~~~WGE~GYfRI~ 442 (548)
T PTZ00364 363 NSDWYNCDENSTEDVRYVSLDDYSTASADRPLRHYFASNVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTRKIA 442 (548)
T ss_pred chHHHhcCCCCccCeeccccccccccccCCcccccccccCCeEEEEEEecccCCCceEEEEECCCCCCCCcccCCeEEEE
Confidence 89999999998631 1 0111 235799999999996 578999999999999 99999999999
Q ss_pred eCCCcccccCceeEE
Q psy4960 324 RGANACGIESYAYLA 338 (341)
Q Consensus 324 r~~n~Cgi~~~~~~~ 338 (341)
||.|+|||++.++..
T Consensus 443 RG~N~CGIes~~v~~ 457 (548)
T PTZ00364 443 RGVNAYNIESEVVVM 457 (548)
T ss_pred cCCCcccccceeeee
Confidence 999999999999854
No 13
>smart00645 Pept_C1 Papain family cysteine protease.
Probab=100.00 E-value=1.1e-50 Score=354.18 Aligned_cols=167 Identities=47% Similarity=0.887 Sum_probs=151.6
Q ss_pred CCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCCC-CCCCCCCcHHHHHHHHHH
Q psy4960 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHG-NLNCNGGNIDVAFEYVKQ 204 (341)
Q Consensus 126 lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~-~~gC~GG~~~~a~~~~~~ 204 (341)
||++||||+.+ +++||+|||.||+|||||++++||++++++++..+.||+|+|++|... +.||+||++..|++|+.+
T Consensus 1 lP~~~D~R~~~--~~~~v~dQg~CGsCwAfa~~~~ie~~~~i~~~~~~~lS~q~l~~C~~~~~~gC~GG~~~~a~~~~~~ 78 (174)
T smart00645 1 LPESFDWRKKG--AVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSTGGNNGCNGGLPDNAFEYIKK 78 (174)
T ss_pred CCCcCcccccC--CCCccccCcccchHHHHHHHHHHHHHHHHhcCCccccCHHHHhhhcCCCCCCCCCcCHHHHHHHHHH
Confidence 69999999998 999999999999999999999999999999998999999999999975 669999999999999999
Q ss_pred c-CCCCCCCCCCcCCCCCccccccccccceeeeccceeechHHHHHHHHhcCCeEEEEeccccccCCCCcccCCCCCCCC
Q psy4960 205 Y-GLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGVDHMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNP 283 (341)
Q Consensus 205 ~-Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~dik~~l~~~gPv~v~~~~~~f~~y~~Gv~~~~~~~~~~ 283 (341)
+ |+++|++|||+. ++.+.+.+|+.|++|||+. +.|..
T Consensus 79 ~~Gi~~e~~~PY~~----------------------------------------~~~~~~~~f~~Y~~Gi~~~--~~~~~ 116 (174)
T smart00645 79 NGGLETESCYPYTG----------------------------------------SVAIDASDFQFYKSGIYDH--PGCGS 116 (174)
T ss_pred cCCcccccccCccc----------------------------------------EEEEEcccccCCcCeEECC--CCCCC
Confidence 8 999999999965 4455556799999999987 35765
Q ss_pred CCCCeEEEEEEEeec-CCeeEEEEEcCCCCCCCCCcEEEEEeCC-CcccccCcee
Q psy4960 284 HKLDHAVAIVGYGEK-NGILTWIVRNSWGDIGPDHGYFQIERGA-NACGIESYAY 336 (341)
Q Consensus 284 ~~~~Hav~iVGyg~~-~g~~ywivkNSWG~~WG~~GY~~i~r~~-n~Cgi~~~~~ 336 (341)
..++|||+|||||.+ ++++|||||||||+.||++|||||.|+. |.|||+....
T Consensus 117 ~~~~Hav~ivGyg~~~~g~~yWii~NSwG~~WG~~G~~~i~~~~~~~c~i~~~~~ 171 (174)
T smart00645 117 GTLDHAVLIVGYGTEENGKDYWIVKNSWGTDWGENGYFRIARGKNNECGIEASVA 171 (174)
T ss_pred CcccEEEEEEEEeecCCCeeEEEEECCCCCCcccCeEEEEEcCCCCccCceeeee
Confidence 558999999999986 8899999999999999999999999998 9999976653
No 14
>cd02619 Peptidase_C1 C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase). Papain-like enzymes are mostly endopeptidases with some exceptions like cathepsins B, C, H and X, which are exopeptidases. Papain-like CPs have different functions in various organisms. Plant CPs are used to mobilize storage proteins in seeds while mammalian CPs are primarily lysosomal enzymes responsible for protein degradation in the lysosome. Papain-like CPs are synthesized as inactive proenzymes with N-terminal propeptide regions, which are removed upon activation. Bleomycin hydrolase (BH) is a CP that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. It forms a hexameric ring barrel str
Probab=100.00 E-value=7.6e-47 Score=340.21 Aligned_cols=191 Identities=30% Similarity=0.423 Sum_probs=164.8
Q ss_pred eeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhC--CCCcCChhHHhhcCCCC-----CCCCCCcHHHHHH-
Q psy4960 129 SLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKK--TLYPLSKSQLVECDHGN-----LNCNGGNIDVAFE- 200 (341)
Q Consensus 129 ~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~--~~~~lS~q~l~dc~~~~-----~gC~GG~~~~a~~- 200 (341)
.+|||+.+ ++||+|||.||+|||||+++++|++++++.. ..+.||+|+|++|.... .+|.||.+..++.
T Consensus 1 ~~d~r~~~---~~~v~dQg~~gsCwafa~~~~les~~~~~~~~~~~~~lS~q~l~~c~~~~~~~~~~~c~gG~~~~~~~~ 77 (223)
T cd02619 1 SVDLRPLR---LTPVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICANDECLGINGSCDGGGPLSALLK 77 (223)
T ss_pred CCcchhcC---CCCcccCCCCcCcHHHHHHHHHHHHHHHhcCCcccccCCHHHHHHhccccccccCCCCCCCcHHHHHHH
Confidence 47999964 7999999999999999999999999999987 78999999999998543 6899999999998
Q ss_pred HHHHcCCCCCCCCCCcCCCCCcccccc----ccccceeeeccceeechH---H-HHHHHHhcCCeEEEEec-cccccCCC
Q psy4960 201 YVKQYGLESQADYPYRNKENITFRCTY----EKEKAKVFVQDTWVTSGV---D-HMMHLLQSGPIGVYLNH-RLIESYDG 271 (341)
Q Consensus 201 ~~~~~Gi~~e~~yPY~~~~~~~~~C~~----~~~~~~~~i~~~y~~~~~---d-ik~~l~~~gPv~v~~~~-~~f~~y~~ 271 (341)
+++.+|+++|++|||..... .|.. ......+++.+ |..+.. + ||++|.++|||+++|.+ ..|..|++
T Consensus 78 ~~~~~Gi~~e~~~Py~~~~~---~~~~~~~~~~~~~~~~~~~-y~~~~~~~~~~ik~aL~~~gPv~~~~~~~~~~~~~~~ 153 (223)
T cd02619 78 LVALKGIPPEEDYPYGAESD---GEEPKSEAALNAAKVKLKD-YRRVLKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKE 153 (223)
T ss_pred HHHHcCCCccccCCCCCCCC---CCCCCCccchhhcceeecc-eeEeCchhHHHHHHHHHHCCCEEEEEEcccchhcccC
Confidence 88888999999999998776 4432 23345678888 887765 2 99999999999999999 89999999
Q ss_pred Cccc---CCCCCCCCCCCCeEEEEEEEeecC--CeeEEEEEcCCCCCCCCCcEEEEEeCC
Q psy4960 272 NPIR---RNDWACNPHKLDHAVAIVGYGEKN--GILTWIVRNSWGDIGPDHGYFQIERGA 326 (341)
Q Consensus 272 Gv~~---~~~~~~~~~~~~Hav~iVGyg~~~--g~~ywivkNSWG~~WG~~GY~~i~r~~ 326 (341)
|++. .....+....++|||+|||||++. +++|||||||||+.||++||+||+++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~Hav~ivGy~~~~~~~~~~~i~~NSwG~~wg~~Gy~~i~~~~ 213 (223)
T cd02619 154 GIIYEEIVYLLYEDGDLGGHAVVIVGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED 213 (223)
T ss_pred ccccccccccccCCCccCCeEEEEEeecCCCCCCCCEEEEEeCCCCccccCCEEEEehhh
Confidence 9873 111245566799999999999876 899999999999999999999999985
No 15
>PTZ00462 Serine-repeat antigen protein; Provisional
Probab=100.00 E-value=5.9e-46 Score=382.85 Aligned_cols=196 Identities=23% Similarity=0.426 Sum_probs=160.8
Q ss_pred cccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCCC--CCCCCCCc-HHHHHHHHHHc-CCCCCCCCCC
Q psy4960 140 LNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHG--NLNCNGGN-IDVAFEYVKQY-GLESQADYPY 215 (341)
Q Consensus 140 v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~--~~gC~GG~-~~~a~~~~~~~-Gi~~e~~yPY 215 (341)
..||+|||.||+|||||+++++|++++++++..+.||+|+|+||+.. +.||.||+ +..++.|++++ |+++|++|||
T Consensus 544 ~i~VKDQG~CGSCWAFASaaaLES~~cIkgg~~v~LSeQqLVDCs~~~gn~GC~GG~~~~efl~yI~e~GgLptESdYPY 623 (1004)
T PTZ00462 544 KIQIEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKDRCDEGSNPLEFLQIIEDNGFLPADSNYLY 623 (1004)
T ss_pred CCCcccCCcchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhcccccCCCCCCCCCcHHHHHHHHHHcCCCcccccCCC
Confidence 47899999999999999999999999999999999999999999853 68999997 55667999888 5899999999
Q ss_pred cC--CCCCccccccccc------------------cceeeeccceeech-----------H-HHHHHHHhcCCeEEEEec
Q psy4960 216 RN--KENITFRCTYEKE------------------KAKVFVQDTWVTSG-----------V-DHMMHLLQSGPIGVYLNH 263 (341)
Q Consensus 216 ~~--~~~~~~~C~~~~~------------------~~~~~i~~~y~~~~-----------~-dik~~l~~~gPv~v~~~~ 263 (341)
.. ..+ .|+.... ...+.+.+ |..+. . .|+.+|+..|||+|+|++
T Consensus 624 t~k~~~g---~Cp~~~~~w~n~~~~~kll~~~~~~~~~i~~kg-Y~~~~s~~~~~n~d~~i~~IK~eI~~kGPVaV~IdA 699 (1004)
T PTZ00462 624 NYTKVGE---DCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKA-YRAYESEHFHDKMDAFIKIIKDEIMNKGSVIAYIKA 699 (1004)
T ss_pred ccCCCCC---CCCCCcccccccccccccccccccccceeeccc-eEEecccccccchhhHHHHHHHHHHhcCCEEEEEEe
Confidence 75 344 6764211 01223344 54332 1 289999999999999999
Q ss_pred cccccC-CCCcccCCCCCCCCCCCCeEEEEEEEeec-----CCeeEEEEEcCCCCCCCCCcEEEEEe-CCCcccccCcee
Q psy4960 264 RLIESY-DGNPIRRNDWACNPHKLDHAVAIVGYGEK-----NGILTWIVRNSWGDIGPDHGYFQIER-GANACGIESYAY 336 (341)
Q Consensus 264 ~~f~~y-~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~-----~g~~ywivkNSWG~~WG~~GY~~i~r-~~n~Cgi~~~~~ 336 (341)
.+|+.| .+|||.. ..|+...++|||+|||||++ ++++|||||||||+.||++|||||.| +.|+|||.....
T Consensus 700 sdf~~Y~~sGIyv~--~~Cgs~~~nHAVlIVGYGt~in~eg~gk~YWIVRNSWGt~WGEnGYFKI~r~g~n~CGin~i~t 777 (1004)
T PTZ00462 700 ENVLGYEFNGKKVQ--NLCGDDTADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVDMYGPSHCEDNFIHS 777 (1004)
T ss_pred ehHHhhhcCCcccc--CCCCCCcCCceEEEEEecccccccCCCCceEEEEcCCCCCcCCCeEEEEEeCCCCCCccchhee
Confidence 778888 4898776 36876668999999999963 25799999999999999999999998 679999999998
Q ss_pred EEeeC
Q psy4960 337 LASVK 341 (341)
Q Consensus 337 ~~~~~ 341 (341)
+|+++
T Consensus 778 ~~~fn 782 (1004)
T PTZ00462 778 VVIFN 782 (1004)
T ss_pred eeeEe
Confidence 88874
No 16
>KOG1544|consensus
Probab=100.00 E-value=3.4e-44 Score=326.14 Aligned_cols=254 Identities=25% Similarity=0.428 Sum_probs=196.9
Q ss_pred ccccCCCCCHHHHHHh-ccccCCCchhhhhhhhhhhhhhhhcccCCCCCCCeeeccccCccccccccccCCccchHHHHH
Q psy4960 79 GTSGSSDRSPQEILQR-TGLRLTGKEKERLEADRERVKKFLNERKKGPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFAT 157 (341)
Q Consensus 79 g~N~fsD~t~eE~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~ 157 (341)
...+|-.||.++-.+. ||+.+|...-.++++.... ++ +..+||+.||-|++.++.+.||.|||+|++.|||++
T Consensus 167 NYSaFWGmtL~DGiKyRLGTL~Ps~sv~nMNEi~~~----l~--p~~~LPE~F~As~KWp~liH~plDQgnCa~SWafST 240 (470)
T KOG1544|consen 167 NYSAFWGMTLDDGIKYRLGTLRPSSSVMNMNEIYTV----LN--PGEVLPEAFEASEKWPNLIHEPLDQGNCAGSWAFST 240 (470)
T ss_pred chhhhhcccccccceeeecccCchhhhhhHHhHhhc----cC--cccccchhhhhhhcCCccccCccccCCcccceeeee
Confidence 3458999998886666 8776665422233322111 11 235699999999998889999999999999999999
Q ss_pred HHHHHHHHHHHhC-C-CCcCChhHHhhcCC-CCCCCCCCcHHHHHHHHHHcCCCCCCCCCCcCCCC-Cccccccccc---
Q psy4960 158 TAILESQVALLKK-T-LYPLSKSQLVECDH-GNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKEN-ITFRCTYEKE--- 230 (341)
Q Consensus 158 ~~~le~~~~~~~~-~-~~~lS~q~l~dc~~-~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~-~~~~C~~~~~--- 230 (341)
+++...+++|... . ...||+|+|++|.. ...||.||.+..|+-|+.+.|++...+|||.+.+. ..+.|...+.
T Consensus 241 aavasDRiAI~S~GR~t~~LSpQnLlSC~~h~q~GC~gG~lDRAWWYlRKrGvVsdhCYP~~~dQ~~~~~~C~m~sR~~g 320 (470)
T KOG1544|consen 241 AAVASDRVAIHSLGRMTPVLSPQNLLSCDTHQQQGCRGGRLDRAWWYLRKRGVVSDHCYPFSGDQAGPAPPCMMHSRAMG 320 (470)
T ss_pred ehhccceeEEeeccccccccChHHhcchhhhhhccCccCcccchheeeecccccccccccccCCCCCCCCCceeeccccC
Confidence 9999999998753 3 67899999999984 46899999999999999999999999999986433 2234543211
Q ss_pred -----------------cceeeeccceeechH--HHHHHHHhcCCeEEEEec-cccccCCCCcccCCCCCCC-----CCC
Q psy4960 231 -----------------KAKVFVQDTWVTSGV--DHMMHLLQSGPIGVYLNH-RLIESYDGNPIRRNDWACN-----PHK 285 (341)
Q Consensus 231 -----------------~~~~~i~~~y~~~~~--dik~~l~~~gPv~v~~~~-~~f~~y~~Gv~~~~~~~~~-----~~~ 285 (341)
...++..-.|..... +|++.|+++|||.+.|.| ++|+.|++|||.+.+..-. ...
T Consensus 321 rgkRqat~~CPn~~~~Sn~iyq~tPPYrVSSnE~eImkElM~NGPVQA~m~VHEDFF~YkgGiY~H~~~~~~~~e~yr~~ 400 (470)
T KOG1544|consen 321 RGKRQATAHCPNSYVNSNDIYQVTPPYRVSSNEKEIMKELMENGPVQALMEVHEDFFLYKGGIYSHTPVSLGRPERYRRH 400 (470)
T ss_pred cccccccCcCCCcccccCceeeecCCeeccCCHHHHHHHHHhCCChhhhhhhhhhhhhhccceeeccccccCCchhhhhc
Confidence 122333332222222 399999999999999999 9999999999998533221 124
Q ss_pred CCeEEEEEEEeecC-----CeeEEEEEcCCCCCCCCCcEEEEEeCCCcccccCceeEE
Q psy4960 286 LDHAVAIVGYGEKN-----GILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLA 338 (341)
Q Consensus 286 ~~Hav~iVGyg~~~-----g~~ywivkNSWG~~WG~~GY~~i~r~~n~Cgi~~~~~~~ 338 (341)
+.|+|.|.|||++. ..+|||..||||+.|||+|||||-||.|.|.||++++.+
T Consensus 401 gtHsVk~tGWG~~~~~~G~~~KyW~aANSWG~~WGE~GYFriLRGvNecdIEsfvIgA 458 (470)
T KOG1544|consen 401 GTHSVKITGWGEETLPDGRTLKYWTAANSWGPAWGERGYFRILRGVNECDIESFVIGA 458 (470)
T ss_pred ccceEEEeecccccCCCCCeeEEEEeecccccccccCceEEEeccccchhhhHhhhhh
Confidence 88999999999752 368999999999999999999999999999999998865
No 17
>COG4870 Cysteine protease [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=7.5e-30 Score=237.82 Aligned_cols=193 Identities=25% Similarity=0.327 Sum_probs=131.1
Q ss_pred CCCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcC--CCCCCC-----CCCcHHH
Q psy4960 125 PLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD--HGNLNC-----NGGNIDV 197 (341)
Q Consensus 125 ~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~--~~~~gC-----~GG~~~~ 197 (341)
.||+.||||+.| .|+||||||.||+|||||+++++|+.+.-.. ...+|+-.+..-. ....+| +||....
T Consensus 98 s~~~~fd~r~~g--~vs~v~dQg~~Gscwaf~t~~sles~l~~~~--~w~~s~~nm~~ll~~~ye~~fd~~~~d~g~~~m 173 (372)
T COG4870 98 SLPSYFDRRDEG--KVSPVKDQGSGGSCWAFATTRSLESYLNPES--AWDFSENNMKNLLGVPYEKGFDYTSNDGGNADM 173 (372)
T ss_pred cchhheeeeccC--CcccccccCcccceEeeeehhhhhheecccc--cccccccchhhhcCCCccccCCCccccCCcccc
Confidence 389999999999 9999999999999999999999999874332 4455554443221 112222 2666766
Q ss_pred HHHHHHHc-CCCCCCCCCCcCCCCCccccccccc-c--ceeeeccceeechH-HHHHHHHhcCCeEEEEec--cccccCC
Q psy4960 198 AFEYVKQY-GLESQADYPYRNKENITFRCTYEKE-K--AKVFVQDTWVTSGV-DHMMHLLQSGPIGVYLNH--RLIESYD 270 (341)
Q Consensus 198 a~~~~~~~-Gi~~e~~yPY~~~~~~~~~C~~~~~-~--~~~~i~~~y~~~~~-dik~~l~~~gPv~v~~~~--~~f~~y~ 270 (341)
+..|+... |-+.+.+-||.......+.|..... . ..+.... ...+.. +|+.++...|-+...|.+ ..+....
T Consensus 174 ~~a~l~e~sgpv~et~d~y~~~s~~~~~~~p~~k~~~~~~~i~~~-~~~LdnG~i~~~~~~yg~~s~~~~id~~~~~~~~ 252 (372)
T COG4870 174 SAAYLTEWSGPVYETDDPYSENSYFSPTNLPVTKHVQEAQIIPSR-KKYLDNGNIKAMFGFYGAVSSSMYIDATNSLGIC 252 (372)
T ss_pred ccccccccCCcchhhcCccccccccCCcCCchhhccccceecccc-hhhhcccchHHHHhhhccccceeEEecccccccc
Confidence 66677666 8888888888876662222221110 0 0111111 222222 399999999988866665 3333323
Q ss_pred CCcccCCCCCCCCCCCCeEEEEEEEeec----------CCeeEEEEEcCCCCCCCCCcEEEEEeCC
Q psy4960 271 GNPIRRNDWACNPHKLDHAVAIVGYGEK----------NGILTWIVRNSWGDIGPDHGYFQIERGA 326 (341)
Q Consensus 271 ~Gv~~~~~~~~~~~~~~Hav~iVGyg~~----------~g~~ywivkNSWG~~WG~~GY~~i~r~~ 326 (341)
.+.+.. .+....+|||+||||++. .|.+.||||||||++||++|||||++..
T Consensus 253 ~~~~~~----~s~~~~gHAv~iVGyDDs~~~n~~~~~~~g~GAfiikNSWGt~wG~~GYfwisY~y 314 (372)
T COG4870 253 IPYPYV----DSGENWGHAVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWISYYY 314 (372)
T ss_pred cCCCCC----CccccccceEEEEeccccccccccccCCCCCceEEEECccccccccCceEEEEeee
Confidence 344433 122468999999999974 3567999999999999999999999986
No 18
>cd00585 Peptidase_C1B Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC). The proteins of this subfamily contain a large insert relative to the C1A peptidase (papain) subfamily. BH is a cysteine peptidase that detoxifies bleomycin by hydrolysis of an amide group. It acts as a carboxypeptidase on its C-terminus to convert itself into an aminopeptidase and peptide ligase. BH is found in all tissues in mammals as well as in many other eukaryotes. Bleomycin, a glycopeptide derived from the fungus Streptomyces verticullus, is an effective anticancer drug due to its ability to induce DNA strand breaks. Human BH is the major cause of tumor cell resistance to bleomycin chemotherapy, and is also genetically linked to Alzheimer's disease. In addition to its peptidase activity, the yeast BH (Gal6) binds DNA and acts as a repressor in the Gal4 regulatory system. BH forms a hexameric ring barrel structure w
Probab=99.92 E-value=4.6e-25 Score=215.70 Aligned_cols=184 Identities=21% Similarity=0.364 Sum_probs=136.4
Q ss_pred ccccccCCccchHHHHHHHHHHHHHHHH-hCCCCcCChhHHhh----------------cC------------CCCCCCC
Q psy4960 141 NPVESQGRCGSCWAFATTAILESQVALL-KKTLYPLSKSQLVE----------------CD------------HGNLNCN 191 (341)
Q Consensus 141 ~pV~dQg~cGsCwAfA~~~~le~~~~~~-~~~~~~lS~q~l~d----------------c~------------~~~~gC~ 191 (341)
.||+||++.|.||.||+...|++.+.++ +...+.||+.++.- +. -.....+
T Consensus 55 ~~vtnQ~~SGrCW~FA~Ln~lr~~~~k~~~~~~felSq~Yl~f~dklEkaN~fle~ii~~~~~~~~~R~v~~ll~~~~~D 134 (437)
T cd00585 55 EPVTNQKSSGRCWLFAALNVLRHQFMKKLNLKEFEFSQSYLFFWDKLEKANYFLENIIETADEPLDDRLVQFLLANPQND 134 (437)
T ss_pred CCcccCCCCchhHHHHCHHHHHHHHHHHcCCCCEEeCcHHHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCcCC
Confidence 5999999999999999999999988875 45689999987764 21 0245688
Q ss_pred CCcHHHHHHHHHHcCCCCCCCCCCcCCCCCc-------------------------------------------------
Q psy4960 192 GGNIDVAFEYVKQYGLESQADYPYRNKENIT------------------------------------------------- 222 (341)
Q Consensus 192 GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~------------------------------------------------- 222 (341)
||....++..++++|+++.+.||-+.....+
T Consensus 135 GGqw~m~~~li~KYGvVPk~~~pet~~s~~t~~~n~~L~~kLr~~a~~lr~~~~~~~~~~~l~~~~~~~~~~iy~il~~~ 214 (437)
T cd00585 135 GGQWDMLVNLIEKYGLVPKSVMPESFNSENSRRLNYLLNRKLREDALELRKLVAKGASKEEIEAKKEEMLKEVYRILAIA 214 (437)
T ss_pred CCchHHHHHHHHHcCCCcccccCCCcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999964211000
Q ss_pred ----c------------------------------ccccc--------cc--c---cee-----------eeccceeech
Q psy4960 223 ----F------------------------------RCTYE--------KE--K---AKV-----------FVQDTWVTSG 244 (341)
Q Consensus 223 ----~------------------------------~C~~~--------~~--~---~~~-----------~i~~~y~~~~ 244 (341)
| .|... +. . ..+ +... |.++|
T Consensus 215 lG~pP~~F~~~y~dkd~~~~~~~~~TP~~F~~~yv~~~~~dyV~l~~~p~~~~p~~~~y~ve~~~Nv~~g~~~~-y~Nvp 293 (437)
T cd00585 215 LGEPPEKFDWEYRDKDKKYHEIKELTPLEFYKKYVKFDLDDYVSLINDPRPDKPYNKLYTVEYLGNVVGGRPIL-YLNVP 293 (437)
T ss_pred cCCCCceEEEEEEeCCCCeeeCCCcCHHHHHHHhcCCCccceEEEEeCCCCCCCCCceEEEecCCcccccccce-EEecC
Confidence 0 00000 00 0 011 1223 66777
Q ss_pred HH-----HHHHHHhcCCeEEEEeccccccCCCCcccCCCC------------------CCCCCCCCeEEEEEEEeec-CC
Q psy4960 245 VD-----HMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDW------------------ACNPHKLDHAVAIVGYGEK-NG 300 (341)
Q Consensus 245 ~d-----ik~~l~~~gPv~v~~~~~~f~~y~~Gv~~~~~~------------------~~~~~~~~Hav~iVGyg~~-~g 300 (341)
.+ +.++|..++||.+++++..|..|++||++.... .|.....+|||+|||||.+ +|
T Consensus 294 ~d~l~~~~~~~L~~g~pV~~g~Dv~~~~~~k~GI~d~~~~~~~~~f~~~~~~~KaeRl~~~es~~tHAM~ivGv~~D~~g 373 (437)
T cd00585 294 MDVLKKAAIAQLKDGEPVWFGCDVGKFSDRKSGILDTDLFDYELLFGIDFGLNKAERLDYGESLMTHAMVLTGVDLDEDG 373 (437)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEcChhhccCCccccCcccchhhhcCccccCCHHHHHhhcCCcCCeEEEEEEEEecCCC
Confidence 63 347888899999999997778999999965210 1334457899999999964 47
Q ss_pred e-eEEEEEcCCCCCCCCCcEEEEEeC
Q psy4960 301 I-LTWIVRNSWGDIGPDHGYFQIERG 325 (341)
Q Consensus 301 ~-~ywivkNSWG~~WG~~GY~~i~r~ 325 (341)
+ .||+|+||||+.||++||++|+++
T Consensus 374 ~p~yw~VkNSWG~~~G~~Gy~~ms~~ 399 (437)
T cd00585 374 KPVKWKVENSWGEKVGKKGYFVMSDD 399 (437)
T ss_pred CcceEEEEcccCCCCCCCcceehhHH
Confidence 6 699999999999999999999875
No 19
>PF03051 Peptidase_C1_2: Peptidase C1-like family This family is a subfamily of the Prosite entry; InterPro: IPR004134 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of proteins belong to MEROPS peptidase family C1, sub-family C1B (bleomycin hydrolase, clan CA). This family contains prokaryotic and eukaryotic aminopeptidases and bleomycin hydrolases.; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 3PW3_F 2CB5_A 1CB5_C 2DZZ_A 2E02_A 2E01_A 2E03_A 1A6R_A 1GCB_A 3GCB_A ....
Probab=99.76 E-value=4.4e-18 Score=166.74 Aligned_cols=183 Identities=22% Similarity=0.393 Sum_probs=114.6
Q ss_pred ccccccCCccchHHHHHHHHHHHHHHHHhC-CCCcCChhHHh----------------hcCC------------CCCCCC
Q psy4960 141 NPVESQGRCGSCWAFATTAILESQVALLKK-TLYPLSKSQLV----------------ECDH------------GNLNCN 191 (341)
Q Consensus 141 ~pV~dQg~cGsCwAfA~~~~le~~~~~~~~-~~~~lS~q~l~----------------dc~~------------~~~gC~ 191 (341)
.||.||.+.|.||.||+..+|+..+.++.+ ..+.||+.+|. ++.. .....+
T Consensus 56 ~~vtnQk~SGRCW~FA~lN~lR~~~~kk~~l~~felSq~Yl~F~DKlEKaN~fLe~ii~~~~~~~d~R~v~~ll~~~~~D 135 (438)
T PF03051_consen 56 GPVTNQKSSGRCWLFAALNVLRHEIMKKLNLKDFELSQNYLFFWDKLEKANYFLENIIDTADEPLDDRLVRFLLKNPVSD 135 (438)
T ss_dssp -S--B--BSSTHHHHHHHHHHHHHHHHHCT-SS--B-HHHHHHHHHHHHHHHHHHHHHHCCTS-TTSHHHHHHHHSTT-S
T ss_pred CCCCCCCCCCCcchhhchHHHHHHHHHHcCCCceEeechHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHhcCCCC
Confidence 599999999999999999999999988766 68999998865 2221 134578
Q ss_pred CCcHHHHHHHHHHcCCCCCCCCCCcCCCCCc-------------------------------------------------
Q psy4960 192 GGNIDVAFEYVKQYGLESQADYPYRNKENIT------------------------------------------------- 222 (341)
Q Consensus 192 GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~------------------------------------------------- 222 (341)
||....+...++++||++.+.||-+.....+
T Consensus 136 GGqw~~~~nli~KYGvVPk~~mpet~~s~~t~~~n~~l~~~Lr~~a~~LR~~~~~~~~~~~l~~~k~~~l~~iy~il~~~ 215 (438)
T PF03051_consen 136 GGQWDMVVNLIKKYGVVPKSVMPETFSSSNTSEMNEMLNTKLREYALELRKLVKAGKSEEELRKLKEEMLAEIYRILAIY 215 (438)
T ss_dssp -B-HHHHHHHHHHH---BGGGSTTGCGCHBHHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHcCcCcHhhCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999865311100
Q ss_pred --------------------------c------ccccc----------c--c---cceeee-----------ccceeech
Q psy4960 223 --------------------------F------RCTYE----------K--E---KAKVFV-----------QDTWVTSG 244 (341)
Q Consensus 223 --------------------------~------~C~~~----------~--~---~~~~~i-----------~~~y~~~~ 244 (341)
| .+... + . ...+.+ .. |.++|
T Consensus 216 lG~PP~~F~~ey~dkd~~~~~~~~~TP~eF~~kyv~~~~ddyVsLin~P~~~~py~~~y~ve~~~Nv~~g~~~~-ylNvp 294 (438)
T PF03051_consen 216 LGEPPEKFTWEYRDKDKKYHRGKNYTPLEFYKKYVGFDLDDYVSLINDPRSHHPYNKLYTVEYLGNVVGGRPVR-YLNVP 294 (438)
T ss_dssp H---SSSEEEEEE-TTS-EEEEEEE-HHHHHHHCTTS-GGGEEEEE--T-TTS-TTCEEEETTTTSSTT-EEEE-EEE--
T ss_pred cCCCChheeEEEeccccccccccccCchhHHHHHhCCCCcceEEEeeCCCccCccceeEEEccCCCEECCccee-EeccC
Confidence 0 00000 0 0 011111 12 66777
Q ss_pred HH-----HHHHHHhcCCeEEEEeccccccCCCCcccCCCC------------------CCCCCCCCeEEEEEEEee-cCC
Q psy4960 245 VD-----HMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDW------------------ACNPHKLDHAVAIVGYGE-KNG 300 (341)
Q Consensus 245 ~d-----ik~~l~~~gPv~v~~~~~~f~~y~~Gv~~~~~~------------------~~~~~~~~Hav~iVGyg~-~~g 300 (341)
.| ++.+|..+.||..+-+|..+...+.||.+.... ....+..+|||+|||.+. ++|
T Consensus 295 id~lk~~~i~~Lk~G~~VwfgcDV~k~~~~k~Gi~D~~~~d~~~~fg~~~~~~K~~Rl~~~eS~~tHAM~itGv~~D~~g 374 (438)
T PF03051_consen 295 IDELKDAAIKSLKAGYPVWFGCDVGKFFDRKNGIMDTDLYDYDSLFGVDFNMSKAERLDYGESTMTHAMVITGVDLDEDG 374 (438)
T ss_dssp HHHHHHHHHHHHHTT--EEEEEETTTTEETTTTEE-TTSB-HHHHHT--S-S-HHHHHHTTSS--EEEEEEEEEEE-TTS
T ss_pred HHHHHHHHHHHHHcCCcEEEeccCCccccccchhhccchhhhhhhhccccccCHHHHHHhCCCCCceeEEEEEEEeccCC
Confidence 63 888888999999999994455678888755221 011234789999999995 667
Q ss_pred e-eEEEEEcCCCCCCCCCcEEEEEe
Q psy4960 301 I-LTWIVRNSWGDIGPDHGYFQIER 324 (341)
Q Consensus 301 ~-~ywivkNSWG~~WG~~GY~~i~r 324 (341)
+ .+|+|+||||+..|.+||+.|+.
T Consensus 375 ~p~~wkVeNSWG~~~g~kGy~~msd 399 (438)
T PF03051_consen 375 KPVRWKVENSWGTDNGDKGYFYMSD 399 (438)
T ss_dssp SEEEEEEE-SBTTTSTBTTEEEEEH
T ss_pred CeeEEEEEcCCCCCCCCCcEEEECH
Confidence 6 69999999999999999999974
No 20
>PF08246 Inhibitor_I29: Cathepsin propeptide inhibitor domain (I29); InterPro: IPR013201 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This entry represents a peptidase inhibitor domain, which belongs to MEROPS peptidase inhibitor family I29. The domain is also found at the N terminus of a variety of peptidase precursors that belong to MEROPS peptidase subfamily C1A; these include cathepsin L, papain, and procaricain (P10056 from SWISSPROT) []. It forms an alpha-helical domain that runs through the substrate-binding site, preventing access. Removal of this region by proteolytic cleavage results in activation of the enzyme. This domain is also found, in one or more copies, in a variety of cysteine peptidase inhibitors such as salarin [].; PDB: 3QT4_A 3QJ3_A 2C0Y_A 2L95_A 1CJL_A 1CS8_A 7PCK_A 1BY8_A 1PCI_A 2O6X_A ....
Probab=99.44 E-value=1.6e-13 Score=97.90 Aligned_cols=49 Identities=29% Similarity=0.588 Sum_probs=42.6
Q ss_pred HHHHHHHhCCccCChHHHHHHHHHHHHHHHhhh-------hcc--ccccCCCCCHHHH
Q psy4960 43 FKTYIVKWNRTYTDDNEIKTRFEYFKQDGKETD-------EYY--GTSGSSDRSPQEI 91 (341)
Q Consensus 43 f~~f~~~~~K~Y~~~~e~~~R~~iF~~n~~~I~-------~~y--g~N~fsD~t~eE~ 91 (341)
|++|+++|+|.|.+.+|+..|+.+|++|++.|. .+| |+|+|||||++||
T Consensus 1 F~~~~~~~~k~Y~~~~e~~~R~~~F~~N~~~I~~~N~~~~~~~~~~~N~fsD~t~eEf 58 (58)
T PF08246_consen 1 FEQFKKKYGKSYKSAEEEARRFAIFKENLRRIEEHNANGNNTYKLGLNQFSDMTPEEF 58 (58)
T ss_dssp HHHHHHHCT---SSHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEE-SSTTTTSSHHHH
T ss_pred CHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEeCccccCcChhhC
Confidence 899999999999999999999999999999999 456 9999999999997
No 21
>smart00848 Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29). This domain is found at the N-terminus of some C1 peptidases such as Cathepsin L where it acts as a propeptide. There are also a number of proteins that are composed solely of multiple copies of this domain such as the peptidase inhibitor salarin. This family is classified as I29 by MEROPS. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a s
Probab=99.18 E-value=1.8e-11 Score=86.65 Aligned_cols=48 Identities=29% Similarity=0.531 Sum_probs=44.6
Q ss_pred HHHHHHHhCCccCChHHHHHHHHHHHHHHHhhh-------hcc--ccccCCCCCHHH
Q psy4960 43 FKTYIVKWNRTYTDDNEIKTRFEYFKQDGKETD-------EYY--GTSGSSDRSPQE 90 (341)
Q Consensus 43 f~~f~~~~~K~Y~~~~e~~~R~~iF~~n~~~I~-------~~y--g~N~fsD~t~eE 90 (341)
|++|+++|+|.|.+.+|...|+.+|.+|++.|. .+| |+|+|||||++|
T Consensus 1 f~~~~~~~~k~y~~~~e~~~r~~~f~~n~~~i~~~N~~~~~~~~~~~N~fsDlt~eE 57 (57)
T smart00848 1 FEQWKKKYGKSYSSEEEELRRFEIFKENLKFIEEHNKKNDHSYTLGLNQFADLTNEE 57 (57)
T ss_pred ChHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCeEecCcccccCCCCC
Confidence 689999999999999999999999999999999 456 999999999886
No 22
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=99.08 E-value=3.1e-10 Score=105.35 Aligned_cols=183 Identities=20% Similarity=0.345 Sum_probs=118.6
Q ss_pred ccccccCCccchHHHHHHHHHHHHHHHHhC-CCCcCChhHHh----------------hcC------------CCCCCCC
Q psy4960 141 NPVESQGRCGSCWAFATTAILESQVALLKK-TLYPLSKSQLV----------------ECD------------HGNLNCN 191 (341)
Q Consensus 141 ~pV~dQg~cGsCwAfA~~~~le~~~~~~~~-~~~~lS~q~l~----------------dc~------------~~~~gC~ 191 (341)
.||.||...|-||.||+...+...+...-+ +.+.||..++. .-+ -...--+
T Consensus 58 d~vtNQk~SGRCWmFAAlNtfRhk~~~el~le~fElSQaytfFwDKlEKaN~FleqIi~tadq~ldsRlv~~LL~~PqqD 137 (444)
T COG3579 58 DKVTNQKQSGRCWMFAALNTFRHKLISELKLEDFELSQAYTFFWDKLEKANWFLEQIIETADQELDSRLVSFLLATPQQD 137 (444)
T ss_pred CccccccccceehHHHHHHHHHHHHHHhcCcceeehhhHHHHHHHHHHHhhHHHHHHHhhcccchHHHHHHHHHcCcccc
Confidence 389999999999999999988776655444 46777765443 111 0133457
Q ss_pred CCcHHHHHHHHHHcCCCCCCCCCCcCCCCC--------------------------------------------------
Q psy4960 192 GGNIDVAFEYVKQYGLESQADYPYRNKENI-------------------------------------------------- 221 (341)
Q Consensus 192 GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~-------------------------------------------------- 221 (341)
||--......+.++|+++-+.||-.-....
T Consensus 138 GGQwdM~v~l~eKYGvVpK~~ypes~sSS~Sr~ln~~Ln~~LR~dAqiLR~a~~eg~~~~~v~~~kEe~l~eif~~l~~~ 217 (444)
T COG3579 138 GGQWDMFVSLFEKYGVVPKSVYPESFSSSNSRELNALLNKLLRQDAQILRDALKEGADDDTVEALKEELLQEIFNFLAMT 217 (444)
T ss_pred CchHHHHHHHHHHhCCCchhhcccccccccHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHH
Confidence 898888999999999999999986521110
Q ss_pred -------------------------cc---ccccc-------------cc--c---ceeeecc----------ceeechH
Q psy4960 222 -------------------------TF---RCTYE-------------KE--K---AKVFVQD----------TWVTSGV 245 (341)
Q Consensus 222 -------------------------~~---~C~~~-------------~~--~---~~~~i~~----------~y~~~~~ 245 (341)
+| .|++. +. + ..+++.- .|.+++.
T Consensus 218 lg~PP~~Fdf~YrdKd~~~h~~k~lTP~eFy~kyv~ldl~~yVslInaPtadkPygk~ytV~~LGnVvgg~~v~ylNv~m 297 (444)
T COG3579 218 LGLPPEKFDFAYRDKDNKYHKEKGLTPQEFYKKYVGLDLKDYVSLINAPTADKPYGKSYTVEFLGNVVGGRAVKYLNVDM 297 (444)
T ss_pred cCCCchhcceEEeccccchhhhcCCCHHHHHHHhcCCCcccceeeccCCcCCCCCcceeehhhhccccCCceeEEecCcH
Confidence 00 01100 00 0 0111110 1444444
Q ss_pred H-----HHHHHHhcCCeEEEEeccccccCCCCcccCCCC------------------CCCCCCCCeEEEEEEEe-ecCC-
Q psy4960 246 D-----HMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDW------------------ACNPHKLDHAVAIVGYG-EKNG- 300 (341)
Q Consensus 246 d-----ik~~l~~~gPv~v~~~~~~f~~y~~Gv~~~~~~------------------~~~~~~~~Hav~iVGyg-~~~g- 300 (341)
+ ....+..+-||-.+-++..+..-+.||.+..-. ..+.....|||+|.|.+ +++|
T Consensus 298 e~lkkl~~~q~qagetVwFG~dvgq~s~rk~Gimdtd~~~~~s~~g~~~~q~KA~RldY~eSLmTHAMvlTGvd~d~~g~ 377 (444)
T COG3579 298 ERLKKLAIKQMQAGETVWFGCDVGQLSDRKTGIMDTDIYDYESSLGINLTQDKAGRLDYGESLMTHAMVLTGVDLDETGN 377 (444)
T ss_pred HHHHHHHHHHHhcCCcEEeecCchhhcccccceeeehhccchhhhCCCcccchhhccccchHHHHHHHHhhccccccCCC
Confidence 3 444566677999998887777777777543100 01122256999999999 4454
Q ss_pred eeEEEEEcCCCCCCCCCcEEEEE
Q psy4960 301 ILTWIVRNSWGDIGPDHGYFQIE 323 (341)
Q Consensus 301 ~~ywivkNSWG~~WG~~GY~~i~ 323 (341)
.--|.|.||||.+=|.+|||-++
T Consensus 378 p~rwkVENSWG~d~G~~GyfvaS 400 (444)
T COG3579 378 PLRWKVENSWGKDVGKKGYFVAS 400 (444)
T ss_pred ceeeEeecccccccCCCceEeeh
Confidence 45899999999999999999876
No 23
>KOG4128|consensus
Probab=97.63 E-value=1.1e-05 Score=75.29 Aligned_cols=76 Identities=26% Similarity=0.477 Sum_probs=59.2
Q ss_pred ccccccCCccchHHHHHHHHHHHHHHHHhC-CCCcCChhHHhh--------------------cCC----------CCCC
Q psy4960 141 NPVESQGRCGSCWAFATTAILESQVALLKK-TLYPLSKSQLVE--------------------CDH----------GNLN 189 (341)
Q Consensus 141 ~pV~dQg~cGsCwAfA~~~~le~~~~~~~~-~~~~lS~q~l~d--------------------c~~----------~~~g 189 (341)
+||.+|.+.|-||.|+.+..+---+.++-+ ....||..+|+- |.. .+..
T Consensus 63 ~pvtnqkssGrcWift~ln~lrl~~~~kLnl~eFElSqayLFFwdKlErcnyFL~~vvd~a~r~ep~DgRlvq~Ll~nP~ 142 (457)
T KOG4128|consen 63 QPVTNQKSSGRCWIFTGLNLLRLEMDRKLNLPEFELSQAYLFFWDKLERCNYFLWTVVDLAMRCEPLDGRLVQNLLKNPV 142 (457)
T ss_pred cccccCcCCCceEEEechhHHHHHHHhcCCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccHHHHHHHhCCC
Confidence 699999999999999999988766655544 367888877651 211 1445
Q ss_pred CCCCcHHHHHHHHHHcCCCCCCCCCCc
Q psy4960 190 CNGGNIDVAFEYVKQYGLESQADYPYR 216 (341)
Q Consensus 190 C~GG~~~~a~~~~~~~Gi~~e~~yPY~ 216 (341)
-+||....-++.++++|+.+..+||-.
T Consensus 143 ~DGGqw~MfvNlVkKYGviPKkcy~~s 169 (457)
T KOG4128|consen 143 PDGGQWQMFVNLVKKYGVIPKKCYLHS 169 (457)
T ss_pred CCCchHHHHHHHHHHhCCCcHHhcccc
Confidence 679999999999999999999999743
No 24
>PF05543 Peptidase_C47: Staphopain peptidase C47; InterPro: IPR008750 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the peptidase family C47 (staphopain family, clan CA). The type example are the staphopains, which are one of four major families of proteinases secreted by the Gram-positive Staphylococcus aureus. These staphylococcal cysteine proteases are secreted as preproenzymes that are proteolytically cleaved to generate the mature enzyme [, , ].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1X9Y_D 1Y4H_B 1PXV_B 1CV8_A.
Probab=96.41 E-value=0.044 Score=47.31 Aligned_cols=117 Identities=23% Similarity=0.302 Sum_probs=67.7
Q ss_pred ccCCccchHHHHHHHHHHHHHHHH--------hCCCCcCChhHHhhcCCCCCCCCCCcHHHHHHHHHHcCCCCCCCCCCc
Q psy4960 145 SQGRCGSCWAFATTAILESQVALL--------KKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVKQYGLESQADYPYR 216 (341)
Q Consensus 145 dQg~cGsCwAfA~~~~le~~~~~~--------~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~ 216 (341)
.||.-+=|-+||.+++|....... +.....+|+++|..++ -.+...++|.+..|...
T Consensus 18 tQg~~pWCa~Ya~aailN~~~~~~~~~A~~iMr~~yPn~s~~~l~~~~--------~~~~~~i~y~ks~g~~~------- 82 (175)
T PF05543_consen 18 TQGYNPWCAGYAMAAILNATTNTKIYNAKDIMRYLYPNVSEEQLKFTS--------LTPNQMIKYAKSQGRNP------- 82 (175)
T ss_dssp --SSSS-HHHHHHHHHHHHHCT-S---HHHHHHHHSTTS-CCCHHH----------B-HHHHHHHHHHTTEEE-------
T ss_pred ccCcCcHHHHHHHHHHHHhhhCcCcCCHHHHHHHHCCCCCHHHHhhcC--------CCHHHHHHHHHHcCcch-------
Confidence 589999999999999887653211 1124567777776663 24567777776544221
Q ss_pred CCCCCccccccccccceeeeccceeechH-H-HHHHHHhcCCeEEEEeccccccCCCCcccCCCCCCCCCCCCeEEEEEE
Q psy4960 217 NKENITFRCTYEKEKAKVFVQDTWVTSGV-D-HMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVG 294 (341)
Q Consensus 217 ~~~~~~~~C~~~~~~~~~~i~~~y~~~~~-d-ik~~l~~~gPv~v~~~~~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVG 294 (341)
-...+ .+. | +++.+..+-|+.+..+. ..+ . .....+|||+|||
T Consensus 83 -----------------~~~n~----~~s~~eV~~~~~~nk~i~i~~~~-----v~~--------~-~~~~~gHAlavvG 127 (175)
T PF05543_consen 83 -----------------QYNNR----MPSFDEVKKLIDNNKGIAILADR-----VEQ--------T-NGPHAGHALAVVG 127 (175)
T ss_dssp -----------------EEECS-------HHHHHHHHHTT-EEEEEEEE-----TTS--------C-TTB--EEEEEEEE
T ss_pred -----------------hHhcC----CCCHHHHHHHHHcCCCeEEEecc-----ccc--------C-CCCccceeEEEEe
Confidence 00111 122 4 88888888888887652 111 1 1235799999999
Q ss_pred Eee-cCCeeEEEEEcCCC
Q psy4960 295 YGE-KNGILTWIVRNSWG 311 (341)
Q Consensus 295 yg~-~~g~~ywivkNSWG 311 (341)
|-. .+|.++.++=|-|-
T Consensus 128 ya~~~~g~~~y~~WNPW~ 145 (175)
T PF05543_consen 128 YAKPNNGQKTYYFWNPWW 145 (175)
T ss_dssp EEEETTSEEEEEEE-TT-
T ss_pred eeecCCCCeEEEEeCCcc
Confidence 986 56799999999984
No 25
>PF13529 Peptidase_C39_2: Peptidase_C39 like family; PDB: 3ERV_A.
Probab=96.28 E-value=0.025 Score=46.26 Aligned_cols=52 Identities=27% Similarity=0.387 Sum_probs=31.6
Q ss_pred HHHHHHHhcCCeEEEEec--cccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCC
Q psy4960 246 DHMMHLLQSGPIGVYLNH--RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSW 310 (341)
Q Consensus 246 dik~~l~~~gPv~v~~~~--~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSW 310 (341)
+|+++|.++.||.+.+.. ... .++.+. ....+|.|+|+||+.+. +++|..+|
T Consensus 91 ~i~~~i~~G~Pvi~~~~~~~~~~---~~~~~~-------~~~~~H~vvi~Gy~~~~---~~~v~DP~ 144 (144)
T PF13529_consen 91 DIKQEIDAGRPVIVSVNSGWRPP---NGDGYD-------GTYGGHYVVIIGYDEDG---YVYVNDPW 144 (144)
T ss_dssp HHHHHHHTT--EEEEEETTSS-----TTEEEE-------E-TTEEEEEEEEE-SSE----EEEE-TT
T ss_pred HHHHHHHCCCcEEEEEEcccccC---CCCCcC-------CCcCCEEEEEEEEeCCC---EEEEeCCC
Confidence 399999999999999973 111 111122 23479999999998532 78888877
No 26
>PF09778 Guanylate_cyc_2: Guanylylate cyclase; InterPro: IPR018616 Members of this family of proteins catalyse the conversion of guanosine triphosphate (GTP) to 3',5'-cyclic guanosine monophosphate (cGMP) and pyrophosphate.
Probab=83.63 E-value=3.4 Score=37.08 Aligned_cols=64 Identities=22% Similarity=0.375 Sum_probs=37.3
Q ss_pred chH-HHHHHHHhcCCeEEEEeccccc--cCCCCcccCCCCCC---CCCCCCeEEEEEEEeecCCeeEEEEEc
Q psy4960 243 SGV-DHMMHLLQSGPIGVYLNHRLIE--SYDGNPIRRNDWAC---NPHKLDHAVAIVGYGEKNGILTWIVRN 308 (341)
Q Consensus 243 ~~~-dik~~l~~~gPv~v~~~~~~f~--~y~~Gv~~~~~~~~---~~~~~~Hav~iVGyg~~~g~~ywivkN 308 (341)
++. +|..+|..+||+.+.++..-.. .-++-........| .....+|-|+|+||+.. .+-++++|
T Consensus 111 vs~~ei~~hl~~g~~aIvLVd~~~L~C~~Ck~~~~~~~~~~~~~~~~~Y~GHYVVlcGyd~~--~~~~~yrd 180 (212)
T PF09778_consen 111 VSIQEIIEHLSSGGPAIVLVDASLLHCDLCKSNCFDPIGSKCFGRSPDYQGHYVVLCGYDAA--TKEFEYRD 180 (212)
T ss_pred ccHHHHHHHHhCCCcEEEEEccccccChhhcccccccccccccCCCCCccEEEEEEEeecCC--CCeEEEeC
Confidence 444 4999999999888888862221 00222221110122 23458999999999943 23455555
No 27
>PF14399 Transpep_BrtH: NlpC/p60-like transpeptidase
Probab=79.97 E-value=4.1 Score=38.35 Aligned_cols=53 Identities=21% Similarity=0.350 Sum_probs=34.5
Q ss_pred HHHHHHhcCCeEEEEeccccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEc
Q psy4960 247 HMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRN 308 (341)
Q Consensus 247 ik~~l~~~gPv~v~~~~~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkN 308 (341)
|++.|..+.||.+.++.-.+ .|...-+ ......|.|+|+||+++ +..+.++-+
T Consensus 81 l~~~l~~g~pv~~~~D~~~l-py~~~~~-------~~~~~~H~i~v~G~d~~-~~~~~v~D~ 133 (317)
T PF14399_consen 81 LKEALDAGRPVIVWVDMYYL-PYRPNYY-------KKHHADHYIVVYGYDEE-EDVFYVSDP 133 (317)
T ss_pred HHHHHhCCCceEEEeccccC-CCCcccc-------ccccCCcEEEEEEEeCC-CCEEEEEcC
Confidence 99999987799999875222 2221111 12346899999999864 345666544
No 28
>PF12385 Peptidase_C70: Papain-like cysteine protease AvrRpt2; InterPro: IPR022118 This is a family of cysteine proteases, found in actinobacteria, protobacteria and firmicutes. Papain-like cysteine proteases play a crucial role in plant-pathogen/pest interactions. On entering the host they act on non-self substrates, thereby manipulating the host to evade proteolysis []. AvrRpt2 from Pseudomonas syringae pv tomato DC3000 triggers resistance to P. syringae-2-dependent defence responses, including hypersensitive cell death, by cleaving the Arabidopsis RIN4 protein which is monitored by the cognate resistance protein RPS2 [].
Probab=76.25 E-value=37 Score=29.05 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=25.6
Q ss_pred HHHHHHhcCCeEEEEeccccccCCCCcccCCCCCCCCCCCCeEEEEEEEee
Q psy4960 247 HMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGE 297 (341)
Q Consensus 247 ik~~l~~~gPv~v~~~~~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~ 297 (341)
+...|.++||+-++... + .+....|+++|.|-+.
T Consensus 101 ~~~LL~~yGPLwv~~~~------------P-----~~~~~~H~~ViTGI~~ 134 (166)
T PF12385_consen 101 LANLLREYGPLWVAWEA------------P-----GDSWVAHASVITGIDG 134 (166)
T ss_pred HHHHHHHcCCeEEEecC------------C-----CCcceeeEEEEEeecC
Confidence 89999999999998542 1 2234579999999874
No 29
>PF08127 Propeptide_C1: Peptidase family C1 propeptide; InterPro: IPR012599 This domain is found at the N-terminal of cathepsin B and cathepsin B-like peptidases that belong to MEROPS peptidase subfamily C1A. Cathepsin B are lysosomal cysteine proteinases belonging to the papain superfamily and are unique in their ability to act as both an endo- and an exopeptidases. They are synthesized as inactive zymogens. Activation of the peptidases occurs with the removal of the propeptide [, ]. ; GO: 0004197 cysteine-type endopeptidase activity, 0050790 regulation of catalytic activity; PDB: 1MIR_A 1PBH_A 2PBH_A 3PBH_A.
Probab=73.57 E-value=3.8 Score=26.81 Aligned_cols=32 Identities=16% Similarity=0.138 Sum_probs=17.1
Q ss_pred HHHHHHhhhhcc--ccccCCCCCHHHHHHhccccC
Q psy4960 67 FKQDGKETDEYY--GTSGSSDRSPQEILQRTGLRL 99 (341)
Q Consensus 67 F~~n~~~I~~~y--g~N~fsD~t~eE~~~~l~~~~ 99 (341)
|++.+.....+| |.| |.++|.+.++.++|...
T Consensus 5 ~I~~IN~~~~tWkAG~N-F~~~~~~~ik~LlGv~~ 38 (41)
T PF08127_consen 5 FIDYINSKNTTWKAGRN-FENTSIEYIKRLLGVLP 38 (41)
T ss_dssp HHHHHHHCT-SEEE-----SSB-HHHHHHCS-B-T
T ss_pred HHHHHHcCCCcccCCCC-CCCCCHHHHHHHcCCCC
Confidence 344444445788 999 89999999999887654
No 30
>cd02549 Peptidase_C39A A sub-family of peptidase family C39. Peptidase family C39 mostly contains bacteriocin-processing endopeptidases from bacteria. The cysteine peptidases in family C39 cleave the "double-glycine" leader peptides from the precursors of various bacteriocins (mostly non-lantibiotic). The cleavage is mediated by the transporter as part of the secretion process. Bacteriocins are antibiotic proteins secreted by some species of bacteria that inhibit the growth of other bacterial species. The bacteriocin is synthesized as a precursor with an N-terminal leader peptide, and processing involves removal of the leader peptide by cleavage at a Gly-Gly bond, followed by translocation of the mature bacteriocin across the cytoplasmic membrane. Most endopeptidases of family C39 are N-terminal domains in larger proteins (ABC transporters) that serve both functions. The proposed protease active site is conserved in this sub-family of proteins with a single peptidase domain, which are
Probab=68.83 E-value=13 Score=30.01 Aligned_cols=45 Identities=20% Similarity=0.234 Sum_probs=30.9
Q ss_pred HHHHHHhcCCeEEEEeccccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCC
Q psy4960 247 HMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSW 310 (341)
Q Consensus 247 ik~~l~~~gPv~v~~~~~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSW 310 (341)
+++.|....||.+.+.. + . .....+|.|+|+||+. .+..+|.+.|
T Consensus 70 ~~~~l~~~~Pvi~~~~~--------~---~-----~~~~~gH~vVv~g~~~---~~~~~i~DP~ 114 (141)
T cd02549 70 LLRQLAAGHPVIVSVNL--------G---V-----SITPSGHAMVVIGYDR---KGNVYVNDPG 114 (141)
T ss_pred HHHHHHCCCeEEEEEec--------C---c-----ccCCCCeEEEEEEEcC---CCCEEEECCC
Confidence 66888888999998764 1 1 0124799999999971 2335666665
No 31
>COG4990 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=66.04 E-value=10 Score=33.17 Aligned_cols=44 Identities=25% Similarity=0.437 Sum_probs=32.9
Q ss_pred HHHHHHHhcCCeEEEEeccccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCC
Q psy4960 246 DHMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWG 311 (341)
Q Consensus 246 dik~~l~~~gPv~v~~~~~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG 311 (341)
||+..|.++.||.+-... |.. ..-|+|+|+||+ +.++..-++||
T Consensus 125 ~ik~ql~kg~PV~iw~T~--~~~----------------~s~H~v~itgyD----k~n~yynDpyG 168 (195)
T COG4990 125 DIKGQLLKGRPVVIWVTN--FHS----------------YSIHSVLITGYD----KYNIYYNDPYG 168 (195)
T ss_pred HHHHHHhcCCcEEEEEec--ccc----------------cceeeeEeeccc----ccceEeccccc
Confidence 499999999999987642 211 357999999998 44666777775
No 32
>cd00044 CysPc Calpains, domains IIa, IIb; calcium-dependent cytoplasmic cysteine proteinases, papain-like. Functions in cytoskeletal remodeling processes, cell differentiation, apoptosis and signal transduction.
Probab=64.98 E-value=11 Score=35.77 Aligned_cols=42 Identities=26% Similarity=0.352 Sum_probs=34.2
Q ss_pred CCCeEEEEEEEeecC--CeeEEEEEcCCCCC--C------------------------CCCcEEEEEeCC
Q psy4960 285 KLDHAVAIVGYGEKN--GILTWIVRNSWGDI--G------------------------PDHGYFQIERGA 326 (341)
Q Consensus 285 ~~~Hav~iVGyg~~~--g~~ywivkNSWG~~--W------------------------G~~GY~~i~r~~ 326 (341)
..+||-.|++.-.-+ +.+...|||-||.. | .++|-|||+..+
T Consensus 234 ~~~HaY~Vl~~~~~~~~~~~lv~lrNPWg~~~w~G~ws~~~~~w~~~~~~~~~~~~~~~~dG~Fwm~~~d 303 (315)
T cd00044 234 VKGHAYSVLDVREVQEEGLRLLRLRNPWGVGEWWGGWSDDSSEWWVIDAERKKLLLSGKDDGEFWMSFED 303 (315)
T ss_pred ccCcceEEeEEEEEccCceEEEEecCCccCCCccCCCCCCCchhccChHHHHHhcCCCCCCCEEEEEhHH
Confidence 479999999998755 88999999999952 2 368999998764
No 33
>smart00230 CysPc Calpain-like thiol protease family. Calpain-like thiol protease family (peptidase family C2). Calcium activated neutral protease (large subunit).
Probab=34.01 E-value=72 Score=30.39 Aligned_cols=28 Identities=29% Similarity=0.458 Sum_probs=22.5
Q ss_pred CCCeEEEEEEEeecCCee--EEEEEcCCCC
Q psy4960 285 KLDHAVAIVGYGEKNGIL--TWIVRNSWGD 312 (341)
Q Consensus 285 ~~~Hav~iVGyg~~~g~~--ywivkNSWG~ 312 (341)
..+||=.|++...-++.+ ...|||-||.
T Consensus 226 v~~HaYsVl~v~~~~~~~~~Ll~lrNPWg~ 255 (318)
T smart00230 226 VKGHAYSVTDVREVQGRRQELLRLRNPWGQ 255 (318)
T ss_pred ccCccEEEEEEEEEecCCeEEEEEECCCCC
Confidence 369999999998644444 9999999993
No 34
>KOG4702|consensus
Probab=25.63 E-value=1.3e+02 Score=22.05 Aligned_cols=33 Identities=18% Similarity=0.331 Sum_probs=24.9
Q ss_pred HHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHh
Q psy4960 40 VDAFKTYIVKWNRTYTDDNEIKTRFEYFKQDGKE 73 (341)
Q Consensus 40 ~~~f~~f~~~~~K~Y~~~~e~~~R~~iF~~n~~~ 73 (341)
-.-|++|+..|.+.-.++ |..+|..-|.+-++.
T Consensus 28 pe~Fee~v~~~krel~pp-e~~~~~EE~~~~lRe 60 (77)
T KOG4702|consen 28 PEIFEEFVRGYKRELSPP-EATKRKEEYENFLRE 60 (77)
T ss_pred hHHHHHHHHhccccCCCh-HHHhhHHHHHHHHHH
Confidence 346899999999988766 666677777666654
No 35
>PF01640 Peptidase_C10: Peptidase C10 family classification.; InterPro: IPR000200 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C10 (streptopain family, clan CA). Streptopain is a cysteine protease found in Streptococcus pyogenes that shows some structural and functional similarity to papain (family C1) [, ]. The order of the catalytic cysteine/histidine dyad is the same and the surrounding sequences are similar. The two proteins also show similar specificities, both preferring a hydrophobic residue at the P2 site [, ]. Streptopain shows a high degree of sequence similarity to the S. pyogenes exotoxin B, and strong similarity to the prtT gene product of Porphyromonas gingivalis (Bacteroides gingivalis), both of which have been included in the family [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 4D8I_A 4D8E_A 4D8B_A 3BBA_B 3BB7_A 2JTC_A 1PVJ_A 1DKI_D 2UZJ_A.
Probab=24.67 E-value=2.6e+02 Score=24.34 Aligned_cols=48 Identities=25% Similarity=0.326 Sum_probs=30.2
Q ss_pred HHHHHHhcCCeEEEEeccccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCC--CCcEEE
Q psy4960 247 HMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGP--DHGYFQ 321 (341)
Q Consensus 247 ik~~l~~~gPv~v~~~~~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG--~~GY~~ 321 (341)
|+..|.++.||...-. -. ..+||.+|=||. ...|| .--|| || .+||++
T Consensus 143 i~~el~~~rPV~~~g~-----------~~---------~~GHawViDGy~---~~~~~--H~NwG--W~G~~nGyy~ 192 (192)
T PF01640_consen 143 IRNELDNGRPVLYSGN-----------SK---------SGGHAWVIDGYD---SDGYF--HCNWG--WGGSSNGYYR 192 (192)
T ss_dssp HHHHHHTT--EEEEEE-----------ET---------TEEEEEEEEEEE---SSSEE--EEE-S--STTTT-EEEE
T ss_pred HHHHHHcCCCEEEEEe-----------cC---------CCCeEEEEcCcc---CCCeE--EEeeC--ccCCCCCccC
Confidence 8889998999987632 11 129999999996 33465 44455 55 569885
No 36
>cd03527 RuBisCO_small Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits.
Probab=21.55 E-value=73 Score=25.05 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=31.2
Q ss_pred HHHHHHhcCCeEEEEec-c-----ccccCCCCcccCCCC--------CCCCCCCCeEEEEEEEeec
Q psy4960 247 HMMHLLQSGPIGVYLNH-R-----LIESYDGNPIRRNDW--------ACNPHKLDHAVAIVGYGEK 298 (341)
Q Consensus 247 ik~~l~~~gPv~v~~~~-~-----~f~~y~~Gv~~~~~~--------~~~~~~~~Hav~iVGyg~~ 298 (341)
|..+|.++--+.+.+.- . .|..++-..|...+. .|.....+|-|-|||+|..
T Consensus 21 I~yll~qG~~~~lE~ad~~~~~~~yW~mwklP~f~~~d~~~Vl~ei~~C~~~~p~~YVRliG~D~~ 86 (99)
T cd03527 21 IDYIISNGWAPCLEFTEPEHYDNRYWTMWKLPMFGCTDPAQVLREIEACRKAYPDHYVRVVGFDNY 86 (99)
T ss_pred HHHHHhCCCEEEEEcccCCCCCCCEEeeccCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC
Confidence 77778777677777654 2 333333333322111 3545568999999999943
No 37
>KOG4621|consensus
Probab=20.85 E-value=2.6e+02 Score=23.17 Aligned_cols=73 Identities=22% Similarity=0.308 Sum_probs=40.6
Q ss_pred HHHHHHHhcCCeEEEEec-c----ccc--cCCCCcccCCCCC--C-CCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCC
Q psy4960 246 DHMMHLLQSGPIGVYLNH-R----LIE--SYDGNPIRRNDWA--C-NPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGP 315 (341)
Q Consensus 246 dik~~l~~~gPv~v~~~~-~----~f~--~y~~Gv~~~~~~~--~-~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG 315 (341)
||..+|+++.-|++.+-- . ++- -.+++.+.+..-. | .+...+|-|+|-||+- -.+-+.++|- ...
T Consensus 61 dIqahLaqGnhiAIaLVdq~~Lhcdlceeplk~ccfspnghhcfcrtp~YqGHfiVi~GYd~--a~~c~~~ndP---A~a 135 (167)
T KOG4621|consen 61 DIQAHLAQGNHIAIALVDQDKLHCDLCEEPLKSCCFSPNGHHCFCRTPCYQGHFIVICGYDA--ARDCFEINDP---ASA 135 (167)
T ss_pred HHHHHHhcCCeEEEEEecCCceehHHHHhHHHHhccCCCCccccccCCcccccEEEEecccc--ccCeEEEcCc---ccC
Confidence 688888865466655432 1 121 2345666653322 2 2335799999999983 3445666553 233
Q ss_pred CCcEEEEE
Q psy4960 316 DHGYFQIE 323 (341)
Q Consensus 316 ~~GY~~i~ 323 (341)
+-|--||+
T Consensus 136 dpg~c~~S 143 (167)
T KOG4621|consen 136 DPGHCRIS 143 (167)
T ss_pred CCcceeeh
Confidence 34555554
Done!