Query psy4960
Match_columns 341
No_of_seqs 254 out of 1759
Neff 7.7
Searched_HMMs 29240
Date Fri Aug 16 22:17:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy4960.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/4960hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qj3_A Cathepsin L-like protei 100.0 4.9E-81 1.7E-85 594.8 29.0 299 32-340 11-331 (331)
2 3qt4_A Cathepsin-L-like midgut 100.0 2.4E-80 8.3E-85 588.9 27.8 290 36-340 20-329 (329)
3 1by8_A Protein (procathepsin K 100.0 1.2E-79 4E-84 582.0 26.7 288 38-340 6-314 (314)
4 2c0y_A Procathepsin S; proenzy 100.0 9.4E-79 3.2E-83 576.0 26.6 287 36-340 5-315 (315)
5 2o6x_A Procathepsin L1, secret 100.0 1.6E-78 5.5E-83 573.2 25.5 283 40-340 2-306 (310)
6 1pci_A Procaricain; zymogen, h 100.0 3.1E-78 1.1E-82 573.8 26.7 289 35-341 14-322 (322)
7 3tnx_A Papain; hydrolase, cyto 100.0 5.7E-78 1.9E-82 577.5 28.5 286 34-340 57-362 (363)
8 1cs8_A Human procathepsin L; p 100.0 5.6E-78 1.9E-82 570.9 26.7 283 39-340 8-316 (316)
9 1xkg_A DER P I, major mite fec 100.0 3.8E-77 1.3E-81 563.4 27.7 282 42-341 7-303 (312)
10 3pdf_A Cathepsin C, dipeptidyl 100.0 9E-69 3.1E-73 526.2 23.2 270 58-339 135-434 (441)
11 3hhi_A Cathepsin B-like cystei 100.0 3.7E-68 1.3E-72 505.0 17.7 267 63-341 4-313 (325)
12 1m6d_A Cathepsin F, catsf; pap 100.0 7.6E-66 2.6E-70 463.0 22.1 210 126-341 1-214 (214)
13 3kwz_A Cathepsin K; enzyme inh 100.0 1E-65 3.5E-70 462.5 22.3 207 126-340 1-215 (215)
14 3i06_A Cruzipain; autocatalyti 100.0 1.2E-65 3.9E-70 462.2 22.3 208 126-340 1-214 (215)
15 3ovx_A Cathepsin S; hydrolase, 100.0 1.4E-64 4.6E-69 456.1 21.2 206 126-340 2-218 (218)
16 8pch_A Cathepsin H; hydrolase, 100.0 1.3E-64 4.3E-69 456.9 20.5 209 126-341 1-219 (220)
17 3f5v_A DER P 1 allergen; aller 100.0 1.3E-64 4.6E-69 457.4 20.0 207 124-340 8-222 (222)
18 2xu3_A Cathepsin L1; hydrolase 100.0 3.8E-64 1.3E-68 453.8 22.6 207 126-340 1-220 (220)
19 2b1m_A SPE31; papain-like, sug 100.0 6E-64 2.1E-68 459.5 23.7 209 125-341 1-225 (246)
20 3pbh_A Procathepsin B; thiol p 100.0 1.6E-64 5.6E-69 478.9 20.4 252 75-341 22-315 (317)
21 1ppo_A Protease omega; hydrola 100.0 5.5E-64 1.9E-68 451.5 22.1 205 126-341 1-216 (216)
22 1cqd_A Protein (protease II); 100.0 4.8E-64 1.7E-68 453.4 21.7 206 125-341 2-218 (221)
23 1iwd_A Ervatamin B; cysteine p 100.0 8.2E-64 2.8E-68 450.0 23.1 204 126-341 1-215 (215)
24 1yal_A Chymopapain; hydrolase, 100.0 9.8E-64 3.4E-68 450.5 21.8 205 126-341 1-216 (218)
25 3p5u_A Actinidin; SAD, cystein 100.0 1.4E-63 4.7E-68 450.2 21.4 205 126-341 1-218 (220)
26 3u8e_A Papain-like cysteine pr 100.0 1.9E-63 6.7E-68 449.7 19.6 205 126-340 1-219 (222)
27 2oul_A Falcipain 2; cysteine p 100.0 4.8E-63 1.6E-67 452.4 21.5 205 124-341 16-241 (241)
28 2cio_A Papain; hydrolase/inhib 100.0 7.2E-63 2.5E-67 443.0 21.6 200 126-340 1-211 (212)
29 3bwk_A Cysteine protease falci 100.0 6.3E-63 2.1E-67 452.2 21.2 206 123-341 17-243 (243)
30 1s4v_A Cysteine endopeptidase; 100.0 1.2E-62 4.1E-67 446.5 21.7 206 125-341 1-220 (229)
31 1o0e_A Ervatamin C; plant cyst 100.0 1.4E-62 4.7E-67 439.9 21.7 198 126-340 1-207 (208)
32 2bdz_A Mexicain; cysteine prot 100.0 1.1E-62 3.9E-67 442.3 21.1 201 126-341 1-212 (214)
33 3f75_A Toxopain-2, cathepsin L 100.0 4E-63 1.4E-67 448.3 17.9 205 125-340 6-224 (224)
34 3ioq_A CMS1MS2; caricaceae, cy 100.0 1.3E-62 4.4E-67 441.7 19.9 201 126-340 1-211 (213)
35 2fo5_A Cysteine proteinase EP- 100.0 2E-62 6.8E-67 452.5 20.4 206 125-341 3-225 (262)
36 3cbj_A Cathepsin B; cathepsin 100.0 1.2E-60 4E-65 442.7 19.4 213 125-341 6-258 (266)
37 3qsd_A Cathepsin B-like peptid 100.0 8.3E-60 2.8E-64 434.3 21.1 212 125-340 2-253 (254)
38 1deu_A Procathepsin X; cystein 100.0 5.9E-60 2E-64 440.0 19.5 210 124-341 34-276 (277)
39 2wbf_X Serine-repeat antigen p 100.0 3.1E-55 1E-59 406.2 22.5 205 128-340 9-258 (265)
40 3ois_A Cysteine protease; alph 100.0 5.6E-52 1.9E-56 389.1 10.8 230 79-326 17-273 (291)
41 2cb5_A Protein (bleomycin hydr 100.0 3.7E-42 1.3E-46 335.9 16.1 207 126-340 48-423 (453)
42 2e01_A Cysteine proteinase 1; 100.0 4.1E-41 1.4E-45 328.9 18.9 209 126-340 53-424 (457)
43 3pw3_A Aminopeptidase C; bleom 100.0 6.2E-36 2.1E-40 286.4 16.1 186 139-325 21-356 (383)
44 3f75_P Toxopain-2, cathepsin L 99.5 1.6E-14 5.3E-19 114.2 8.0 63 37-99 19-90 (106)
45 2l95_A Crammer, LP06209P; cyst 99.5 4.6E-14 1.6E-18 106.3 5.5 57 40-98 7-76 (80)
46 1pxv_A Cysteine protease; hydr 97.6 0.0014 4.6E-08 55.3 13.4 131 144-327 25-164 (183)
47 1x9y_A Cysteine proteinase; ha 97.4 0.0019 6.6E-08 60.0 12.9 130 144-326 201-339 (367)
48 1cv8_A Staphopain; cysteine pr 97.1 0.0077 2.6E-07 50.6 12.2 119 144-311 16-144 (174)
49 3erv_A Putative C39-like pepti 71.1 6.9 0.00024 34.5 6.0 54 246-310 134-196 (236)
50 3bb7_A Interpain A; cysteine p 44.1 30 0.001 31.8 5.4 58 247-324 241-298 (321)
51 1dki_A Pyrogenic exotoxin B zy 43.3 36 0.0012 31.9 5.9 53 247-324 292-344 (371)
52 4d8b_A Streptopain; papain fol 30.4 57 0.002 29.0 4.8 51 247-324 174-226 (261)
53 1ziv_A Calpain 9; cysteine pro 28.5 60 0.0021 29.9 4.8 28 285-312 243-274 (339)
54 2r9f_A Calpain-1 catalytic sub 26.7 71 0.0024 29.4 4.9 38 286-323 245-312 (339)
55 1th5_A NIFU1; iron-sulfur clus 23.3 32 0.0011 24.4 1.4 27 140-168 37-63 (74)
56 2nqa_A Calpain 8; calpain, cal 22.5 91 0.0031 28.4 4.8 38 286-323 240-307 (326)
No 1
>3qj3_A Cathepsin L-like protein; hydrolase, proteinase, larVal midgut; 1.85A {Tenebrio molitor} SCOP: d.3.1.0
Probab=100.00 E-value=4.9e-81 Score=594.82 Aligned_cols=299 Identities=31% Similarity=0.570 Sum_probs=256.5
Q ss_pred ccccchhHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHhhh----------hcc--ccccCCCCCHHHHHHh-cccc
Q psy4960 32 LAYDSIKQVDAFKTYIVKWNRTYTDDNEIKTRFEYFKQDGKETD----------EYY--GTSGSSDRSPQEILQR-TGLR 98 (341)
Q Consensus 32 ~~~~~~~~~~~f~~f~~~~~K~Y~~~~e~~~R~~iF~~n~~~I~----------~~y--g~N~fsD~t~eE~~~~-l~~~ 98 (341)
....+..++.+|++|+++|+|.|.+.+|+.+|+.||++|+++|+ .+| |+|+|+|||.|||+++ ++.+
T Consensus 11 ~~~~~~~l~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlt~eEf~~~~~~~~ 90 (331)
T 3qj3_A 11 SALPSTFVAEKWENFKTTYARSYVNAKEETFRKQIFQKKLETFEEHNEKYRQGLVSYTLGVNLFTDMTPEEMKAYTHGLI 90 (331)
T ss_dssp --CCHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSEEECCSTTTTCCHHHHHHHHSCCC
T ss_pred CCCCCHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCceeecccccccCCHHHHHHHhcccc
Confidence 33445566789999999999999998899999999999999998 357 9999999999999997 5544
Q ss_pred CCCchhhhhhhhhhhhhhhhcccCCCCCCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCC--CCcCC
Q psy4960 99 LTGKEKERLEADRERVKKFLNERKKGPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKT--LYPLS 176 (341)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~--~~~lS 176 (341)
.+... ...........-.......+||++||||++| +||||||||.||||||||++++||++++++++. .+.||
T Consensus 91 ~~~~~--~~~~~~~~~~~~~~~~~~~~lP~s~DwR~~g--~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~~~LS 166 (331)
T 3qj3_A 91 MPADL--HKNGIPIKTREDLGLNASVRYPASFDWRDQG--MVSPVKNQGSCGSSWAFSSTGAIESQMKIANGAGYDSSVS 166 (331)
T ss_dssp CCSST--TTTCEEECSGGGGTCCSSCCCCSSEEGGGGT--CSCCCCBCCSSCCHHHHHHHHHHHHHHHHHHCTTSCCCBC
T ss_pred ccccc--cccCcccccccccccccccCCCcceecccCC--ccCCCccCcccchhhHHHHHHHHHHHHHHHhCCCcccCcC
Confidence 32210 0000000000000000123599999999999 999999999999999999999999999999998 89999
Q ss_pred hhHHhhcCCCCCCCCCCcHHHHHHHHHHc-CCCCCCCCCCcCCCCCccccccccccceeeeccceeechH---H-HHHHH
Q psy4960 177 KSQLVECDHGNLNCNGGNIDVAFEYVKQY-GLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV---D-HMMHL 251 (341)
Q Consensus 177 ~q~l~dc~~~~~gC~GG~~~~a~~~~~~~-Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~---d-ik~~l 251 (341)
+|+|+||+..+.||+||++..|++|+.++ ||++|++|||.+..+ .|........+++.+ |..++. + |+++|
T Consensus 167 eQ~LvdC~~~~~GC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~v~~~~e~~lk~al 242 (331)
T 3qj3_A 167 EQQLVDCVPNALGCSGGWMNDAFTYVAQNGGIDSEGAYPYEMADG---NCHYDPNQVAARLSG-YVYLSGPDENMLADMV 242 (331)
T ss_dssp HHHHHHHCTTSCGGGCCCHHHHHHHHHHHTCEEBTTTSCCCSSCC---CCCCCTTSEEECCSE-EEEESSCCHHHHHHHH
T ss_pred HHHHhhhccCCCCCCCCCHHHHHHHHHHcCCcCcccccCccCCCC---CCCCCcccceeEeeE-EEEeCCCCHHHHHHHH
Confidence 99999999878999999999999999999 999999999999888 999887777889999 998874 2 99999
Q ss_pred HhcCCeEEEEec-cccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCC-Ccc
Q psy4960 252 LQSGPIGVYLNH-RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGA-NAC 329 (341)
Q Consensus 252 ~~~gPv~v~~~~-~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~-n~C 329 (341)
+++|||+|+|++ .+|++|++|||.. +.|+...++|||+|||||+++|++|||||||||++||++|||||+|+. |.|
T Consensus 243 ~~~GPV~v~i~a~~~f~~Y~~Gvy~~--~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~C 320 (331)
T 3qj3_A 243 ATKGPVAVAFDADDPFGSYSGGVYYN--PTCETNKFTHAVLIVGYGNENGQDYWLVKNSWGDGWGLDGYFKIARNANNHC 320 (331)
T ss_dssp HHHCCEEEEECCCTTGGGEEEEEECC--TTCCSSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGG
T ss_pred HhCCCEEEEEEcccccccccCceEeC--CCCCCCcCCEEEEEEEEeccCCceEEEEEcCCCCCcCCCCEEEEEcCCCCcc
Confidence 999999999999 5699999999998 578766799999999999999999999999999999999999999998 999
Q ss_pred cccCceeEEee
Q psy4960 330 GIESYAYLASV 340 (341)
Q Consensus 330 gi~~~~~~~~~ 340 (341)
||++.++||+|
T Consensus 321 gI~~~~~~p~v 331 (331)
T 3qj3_A 321 GIAGVASVPTL 331 (331)
T ss_dssp GTTTSCEEEEC
T ss_pred CcCCceeeeeC
Confidence 99999999986
No 2
>3qt4_A Cathepsin-L-like midgut cysteine proteinase; hydrolase, zymogen, intramolecular DISS bonds, insect larVal midgut; HET: PG4 PG6; 2.11A {Tenebrio molitor}
Probab=100.00 E-value=2.4e-80 Score=588.91 Aligned_cols=290 Identities=29% Similarity=0.575 Sum_probs=252.6
Q ss_pred chhHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHhhh----------hcc--ccccCCCCCHHHHHHhccccCCCch
Q psy4960 36 SIKQVDAFKTYIVKWNRTYTDDNEIKTRFEYFKQDGKETD----------EYY--GTSGSSDRSPQEILQRTGLRLTGKE 103 (341)
Q Consensus 36 ~~~~~~~f~~f~~~~~K~Y~~~~e~~~R~~iF~~n~~~I~----------~~y--g~N~fsD~t~eE~~~~l~~~~~~~~ 103 (341)
....+.+|++||++|+|.|.+.+|+.+|+.||++|+++|+ .+| |+|+|+|||.|||+++++.+.....
T Consensus 20 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlt~eEf~~~~g~~~~~~~ 99 (329)
T 3qt4_A 20 KSLFQEQWSQFKLTHKKSYSSPIEEIRRQLIFKDNVAKIAEHNAKFEKGEVTYSKAMNQFGDMSKEEFLAYVNRGKAQKP 99 (329)
T ss_dssp CCHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSEEECCCGGGGCCHHHHHHHHHHTCCC--
T ss_pred HHHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCeEEeccccccCCHHHHHHhcCCcccccc
Confidence 4456789999999999999998899999999999999999 256 9999999999999987554432110
Q ss_pred hhhhhhhhhhhhhhhcccCCCCCCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhc
Q psy4960 104 KERLEADRERVKKFLNERKKGPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVEC 183 (341)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc 183 (341)
.... .....+... . .+||++||||++ +||||||||.||||||||++++||++++++++..+.||+|+|+||
T Consensus 100 -~~~~---~~~~~~~~~-~-~~lP~~~DwR~~---~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~LSeQ~LvdC 170 (329)
T 3qt4_A 100 -KHPE---NLRMPYVSS-K-KPLAASVDWRSN---AVSEVKDQGQCGSSWSFSTTGAVEGQLALQRGRLTSLSEQNLIDC 170 (329)
T ss_dssp --------CCEEECCCC-C-SCCCSCEECTTT---SCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHH
T ss_pred -cccc---cccccccCC-c-cCCCCCEEcccc---ccCCCccCCCCcChHHHHHHHHHHHHHHHHcCCcccCCHHHHHHh
Confidence 0000 000001111 1 359999999996 799999999999999999999999999999999999999999999
Q ss_pred CC--CCCCCCCCcHHHHHHHHHHcCCCCCCCCCCcCCCCCccccccccccceeeeccceeechH---H-HHHHHHhcCCe
Q psy4960 184 DH--GNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV---D-HMMHLLQSGPI 257 (341)
Q Consensus 184 ~~--~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~---d-ik~~l~~~gPv 257 (341)
+. .+.||+||++..|++|+.++||++|++|||.+..+ .|........+++.+ |..++. + |+++|+++|||
T Consensus 171 ~~~~g~~GC~GG~~~~a~~yi~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~v~~~~e~~lk~al~~~GPV 246 (329)
T 3qt4_A 171 SSSYGNAGCDGGWMDSAFSYIHDYGIMSESAYPYEAQGD---YCRFDSSQSVTTLSG-YYDLPSGDENSLADAVGQAGPV 246 (329)
T ss_dssp CGGGTCCTTBCCCHHHHHHHHHHSCBCBTTTSCCCSSCC---CCCCCGGGCCBCCSE-EEECCTTCHHHHHHHHHHTCCE
T ss_pred ccccCCCCCCCCChhHHHHHHHHcCCCcHHHeeeecCCC---CCCCCcccceEEece-EEEecCCCHHHHHHHHHhCCCE
Confidence 85 37899999999999999999999999999999888 999877777789999 999874 2 99999999999
Q ss_pred EEEEec-cccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCC-CcccccCce
Q psy4960 258 GVYLNH-RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGA-NACGIESYA 335 (341)
Q Consensus 258 ~v~~~~-~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~-n~Cgi~~~~ 335 (341)
+|+|++ .+|++|++|||.. +.|+...++|||+|||||+++|.+|||||||||++||++|||||+|+. |.|||++.+
T Consensus 247 ~v~i~a~~~f~~Y~~GVy~~--~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~ 324 (329)
T 3qt4_A 247 AVAIDATDELQFYSGGLFYD--QTCNQSDLNHGVLVVGYGSDNGQDYWILKNSWGSGWGESGYWRQVRNYGNNCGIATAA 324 (329)
T ss_dssp EEEECCCGGGTTEEEEEECC--SSCCSSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTTTC
T ss_pred EEEEecChhhhhccCceeec--CCCCCCcCCEEEEEEEEEeeCCccEEEEEeCCCCcccCCcEEEEEeCCCCccCCCCce
Confidence 999999 7999999999998 578766799999999999999999999999999999999999999998 999999999
Q ss_pred eEEee
Q psy4960 336 YLASV 340 (341)
Q Consensus 336 ~~~~~ 340 (341)
+||+|
T Consensus 325 ~yp~v 329 (329)
T 3qt4_A 325 SYPAL 329 (329)
T ss_dssp EEEEC
T ss_pred eEeeC
Confidence 99986
No 3
>1by8_A Protein (procathepsin K); hydrolase(sulfhydryl proteinase), papain; 2.60A {Homo sapiens} SCOP: d.3.1.1 PDB: 7pck_A
Probab=100.00 E-value=1.2e-79 Score=581.99 Aligned_cols=288 Identities=28% Similarity=0.550 Sum_probs=249.9
Q ss_pred hHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHhhh----------hcc--ccccCCCCCHHHHHHh-ccccCCCchh
Q psy4960 38 KQVDAFKTYIVKWNRTYTDDNEIKTRFEYFKQDGKETD----------EYY--GTSGSSDRSPQEILQR-TGLRLTGKEK 104 (341)
Q Consensus 38 ~~~~~f~~f~~~~~K~Y~~~~e~~~R~~iF~~n~~~I~----------~~y--g~N~fsD~t~eE~~~~-l~~~~~~~~~ 104 (341)
.+..+|++|+++|+|.|.+.+|+.+|+.||++|++.|+ .+| |+|+|+|||.+||+++ ++...+...
T Consensus 6 ~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~FaDlt~eEf~~~~~g~~~~~~~- 84 (314)
T 1by8_A 6 ILDTHWELWKKTHRKQYNNKVDEISRRLIWEKNLKYISIHNLEASLGVHTYELAMNHLGDMTSEEVVQKMTGLKVPLSH- 84 (314)
T ss_dssp THHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSEEECCCTTSSSCHHHHHHHSCCCCCCSCC-
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCcceEEcccccccCCHHHHHHHhccCCCCccc-
Confidence 34678999999999999998899999999999999998 246 9999999999999876 554432210
Q ss_pred hhhhhhhhhhhhhhcccCCCCCCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcC
Q psy4960 105 ERLEADRERVKKFLNERKKGPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD 184 (341)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~ 184 (341)
.... ..+........||++||||++| +|+||||||.||||||||++++||++++|+++..+.||+|+|+||+
T Consensus 85 --~~~~----~~~~~~~~~~~lP~~~DwR~~g--~vtpVkdQg~CGSCWAFs~~~alE~~~~i~~g~~~~LSeq~lvdC~ 156 (314)
T 1by8_A 85 --SRSN----DTLYIPEWEGRAPDSVDYRKKG--YVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCV 156 (314)
T ss_dssp --CCSS----SSSBCCCCSSCCCSCCBSTTTT--CSCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHTTC
T ss_pred --ccCC----ccccccccccCCCCeEeCCCCC--CCCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCCcccCHHHHHHhc
Confidence 0000 0011111112389999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHH-cCCCCCCCCCCcCCCCCccccccccccceeeeccceeechH---H-HHHHHHhcCCeEE
Q psy4960 185 HGNLNCNGGNIDVAFEYVKQ-YGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV---D-HMMHLLQSGPIGV 259 (341)
Q Consensus 185 ~~~~gC~GG~~~~a~~~~~~-~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~---d-ik~~l~~~gPv~v 259 (341)
..+.||+||++..|++|+.+ .||++|++|||.+..+ .|...+....+++.+ |..++. + |+++|+++|||+|
T Consensus 157 ~~~~gC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~v~~~~~~~i~~al~~~GPV~v 232 (314)
T 1by8_A 157 SENDGCGGGYMTNAFQYVQKNRGIDSEDAYPYVGQEE---SCMYNPTGKAAKCRG-YREIPEGNEKALKRAVARVGPVSV 232 (314)
T ss_dssp TTSCGGGCCCSHHHHHHHHHTTCBCBTTTSCCCSSCC---CCCCCGGGCCBCCSC-EEECCSSCHHHHHHHHHHHCCEEE
T ss_pred CCCCCCcCCCHHHHHHHHHHcCCcCcHhhCCCCCCCC---CcCCCCccceeEECc-EEEecCCCHHHHHHHHHHcCCEEE
Confidence 77899999999999999985 5999999999999888 898766666788899 998874 2 9999999999999
Q ss_pred EEec--cccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCC-CcccccCcee
Q psy4960 260 YLNH--RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGA-NACGIESYAY 336 (341)
Q Consensus 260 ~~~~--~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~-n~Cgi~~~~~ 336 (341)
+|++ .+|++|++|||.. +.|+...++|||+|||||+++|.+|||||||||++||++|||||+|+. |.|||++.++
T Consensus 233 ~i~~~~~~f~~Y~~Gvy~~--~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~~~~~ 310 (314)
T 1by8_A 233 AIDASLTSFQFYSKGVYYD--ESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLAS 310 (314)
T ss_dssp EECCCSHHHHTEEEECBCC--TTCCSSCCCEEEEEEEEEEETTEEEEEEECSBTTTSTBTTEEEECCSSSCGGGTTSSCE
T ss_pred EEEeChHHhhhccCceecC--CCCCCCCCCeEEEEEEEeccCCceEEEEEcCCCCCcCcCCEEEEEcCCCCcCCccCeeE
Confidence 9999 4899999999988 468766799999999999989999999999999999999999999996 8999999999
Q ss_pred EEee
Q psy4960 337 LASV 340 (341)
Q Consensus 337 ~~~~ 340 (341)
||++
T Consensus 311 ~p~~ 314 (314)
T 1by8_A 311 FPKM 314 (314)
T ss_dssp EECC
T ss_pred EeeC
Confidence 9975
No 4
>2c0y_A Procathepsin S; proenzyme, proteinase, hydrolase, thiol protease, prosegment binding loop, glycoprotein, lysosome, protease, zymogen; 2.1A {Homo sapiens}
Probab=100.00 E-value=9.4e-79 Score=576.01 Aligned_cols=287 Identities=28% Similarity=0.566 Sum_probs=248.4
Q ss_pred chhHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHhhh----------hcc--ccccCCCCCHHHHHHh-ccccCCCc
Q psy4960 36 SIKQVDAFKTYIVKWNRTYTDDNEIKTRFEYFKQDGKETD----------EYY--GTSGSSDRSPQEILQR-TGLRLTGK 102 (341)
Q Consensus 36 ~~~~~~~f~~f~~~~~K~Y~~~~e~~~R~~iF~~n~~~I~----------~~y--g~N~fsD~t~eE~~~~-l~~~~~~~ 102 (341)
+..+..+|++|+++|+|.|.+.+|+..|+.||++|++.|+ .+| |+|+|+|||.+||+++ ++.+.+..
T Consensus 5 ~~~~~~~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~s~~~g~N~FaDlt~eEf~~~~~g~~~~~~ 84 (315)
T 2c0y_A 5 DPTLDHHWHLWKKTYGKQYKEKNEEAVRRLIWEKNLKFVMLHNLEHSMGMHSYDLGMNHLGDMTSEEVMSLMSSLRVPSQ 84 (315)
T ss_dssp CGGGHHHHHHHHHHHTCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCGGGGCCHHHHHHHTTSBCCCCG
T ss_pred hHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHhhcccccCcceEeccCccccCCHHHHHHHhcCCCCCcc
Confidence 3345779999999999999888899999999999999998 246 9999999999999876 55443221
Q ss_pred hhhhhhhhhhhhhhhhcccCCCCCCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhh
Q psy4960 103 EKERLEADRERVKKFLNERKKGPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVE 182 (341)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~d 182 (341)
. .... .+.... ..+||++||||++| +|+||||||.||||||||++++||++++|+++..+.||+|+|+|
T Consensus 85 ~---~~~~-----~~~~~~-~~~lP~~~DwR~~g--~vtpVkdQg~CGSCWAfs~~~alE~~~~i~~g~~~~LSeq~lvd 153 (315)
T 2c0y_A 85 W---QRNI-----TYKSNP-NRILPDSVDWREKG--CVTEVKYQGSCGAAWAFSAVGALEAQLKLKTGKLVSLSAQNLVD 153 (315)
T ss_dssp G---GSCB-----CC-------CCCSCEETTTTT--CCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHH
T ss_pred c---cCCc-----cccCcc-cCCCCCeEecCCCC--CcCCCcCcccCCCcHHHHHHHHHHHHHHHHhCCCcCcCHHHHHh
Confidence 1 0000 011011 12499999999999 99999999999999999999999999999999999999999999
Q ss_pred cC-C--CCCCCCCCcHHHHHHHHHH-cCCCCCCCCCCcCCCCCccccccccccceeeeccceeechH---H-HHHHHHhc
Q psy4960 183 CD-H--GNLNCNGGNIDVAFEYVKQ-YGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV---D-HMMHLLQS 254 (341)
Q Consensus 183 c~-~--~~~gC~GG~~~~a~~~~~~-~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~---d-ik~~l~~~ 254 (341)
|+ . .+.||+||++..|++|+.+ .||++|++|||.+..+ .|...+....+++.+ |..++. + |+++|+++
T Consensus 154 C~~~~~~~~gC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~v~~~~~~~i~~al~~~ 229 (315)
T 2c0y_A 154 CSTEKYGNKGCNGGFMTTAFQYIIDNKGIDSDASYPYKAMDQ---KCQYDSKYRAATCSK-YTELPYGREDVLKEAVANK 229 (315)
T ss_dssp HSCGGGTCCGGGCBCHHHHHHHHHHHTCEEBTTTSCCCSSCC---CCCCCGGGEEECCCE-EEECCTTCHHHHHHHHHHT
T ss_pred hcccccCCCCCCCCCHHHHHHHHHHhCCcCchhcCCCccCCC---CcccCCcccccccCC-eEEeCCCCHHHHHHHHHHc
Confidence 98 3 4889999999999999995 5999999999999888 898776666788888 988874 2 99999999
Q ss_pred CCeEEEEec--cccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCC-Ccccc
Q psy4960 255 GPIGVYLNH--RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGA-NACGI 331 (341)
Q Consensus 255 gPv~v~~~~--~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~-n~Cgi 331 (341)
|||+|+|++ .+|++|++|||.. +.|+. .++|||+|||||+++|++|||||||||++||++|||||+|+. |.|||
T Consensus 230 GPV~v~i~~~~~~f~~Y~~Gvy~~--~~c~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI 306 (315)
T 2c0y_A 230 GPVSVGVDARHPSFFLYRSGVYYE--PSCTQ-NVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGI 306 (315)
T ss_dssp CCEEEEECCCSHHHHTEEEEEECC--TTCCS-CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGT
T ss_pred CCEEEEEecCchhhhccCCCcccC--CCCCC-cCCEEEEEEEEeecCCCcEEEEEcCCCCCcCCCcEEEEEcCCCCccCc
Confidence 999999999 4899999999988 46876 789999999999989999999999999999999999999996 99999
Q ss_pred cCceeEEee
Q psy4960 332 ESYAYLASV 340 (341)
Q Consensus 332 ~~~~~~~~~ 340 (341)
++.++||++
T Consensus 307 ~~~~~~p~~ 315 (315)
T 2c0y_A 307 ASFPSYPEI 315 (315)
T ss_dssp TTSCEEEEC
T ss_pred CceeEEeeC
Confidence 999999985
No 5
>2o6x_A Procathepsin L1, secreted cathepsin L 1; hydrolase, thiol protease, cysteine protease, zymogen, hydro; 1.40A {Fasciola hepatica}
Probab=100.00 E-value=1.6e-78 Score=573.21 Aligned_cols=283 Identities=30% Similarity=0.572 Sum_probs=245.9
Q ss_pred HHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHhhh----------hcc--ccccCCCCCHHHHHHh-cc-ccCCCchhh
Q psy4960 40 VDAFKTYIVKWNRTYTDDNEIKTRFEYFKQDGKETD----------EYY--GTSGSSDRSPQEILQR-TG-LRLTGKEKE 105 (341)
Q Consensus 40 ~~~f~~f~~~~~K~Y~~~~e~~~R~~iF~~n~~~I~----------~~y--g~N~fsD~t~eE~~~~-l~-~~~~~~~~~ 105 (341)
+.+|++||++|+|.|.+.+|+.+| .||++|++.|+ .+| |+|+|+|||.+||+++ ++ .+.+.. .
T Consensus 2 ~~~f~~~~~~~~K~Y~~~~E~~~R-~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~F~Dlt~eEf~~~~~g~~~~~~~--~ 78 (310)
T 2o6x_A 2 DDLWHQWKRMYNKEYNGADDQHRR-NIWEKNVKHIQEHNLRHDLGLVTYTLGLNQFTDMTFEEFKAKYLTEMSRASD--I 78 (310)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHH-HHHHHHHHHHHHHHHHHHTTSSSEEECCCTTTTSCHHHHHHHHCCCCCCGGG--G
T ss_pred hHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHHHHHHHHHhhhccCCCcEEEeccccCCCCHHHHHHHhcCCCCCccc--c
Confidence 358999999999999988899999 99999999998 146 9999999999999976 55 332111 0
Q ss_pred hhhhhhhhhhhhhcccCCCCCCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCC
Q psy4960 106 RLEADRERVKKFLNERKKGPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185 (341)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~ 185 (341)
..... .+... .. +||++||||++| +|+||||||.||||||||++++||++++|+++..+.||+|+|+||+.
T Consensus 79 ~~~~~-----~~~~~-~~-~lP~~~DwR~~g--~vtpVkdQg~CGSCWAfa~~~alE~~~~i~~g~~~~LS~q~lvdC~~ 149 (310)
T 2o6x_A 79 LSHGV-----PYEAN-NR-AVPDKIDWRESG--YVTEVKDQGNCGSGWAFSTTGTMEGQYMKNERTSISFSEQQLVDCSR 149 (310)
T ss_dssp SCSSE-----ECCC------CCSCEEGGGGT--CCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSSCCCBCHHHHHHHCG
T ss_pred cccCC-----ccccc-cC-CCCCeEecCcCC--CCCCcccCCCCCccHHHHhHHHHHHHHHHHhCCCcCcCHHHHHHhhh
Confidence 00000 01111 12 499999999999 99999999999999999999999999999999999999999999985
Q ss_pred --CCCCCCCCcHHHHHHHHHHcCCCCCCCCCCcCCCCCccccccccccceeeeccceeechH---H-HHHHHHhcCCeEE
Q psy4960 186 --GNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV---D-HMMHLLQSGPIGV 259 (341)
Q Consensus 186 --~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~---d-ik~~l~~~gPv~v 259 (341)
.+.||+||++..|++|+.+.||++|++|||.+..+ .|........+++.+ |..++. + |+++|+++|||+|
T Consensus 150 ~~~~~gC~GG~~~~a~~yi~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~v~~~~~~~i~~~l~~~GPV~v 225 (310)
T 2o6x_A 150 PWGNNGCGGGLMENAYQYLKQFGLETESSYPYTAVEG---QCRYNKQLGVAKVTG-FYTVHSGSEVELKNLVGAEGPAAV 225 (310)
T ss_dssp GGTCCGGGCCCHHHHHHHHTTSCBCBTTTSCCCSSCC---CCCCCGGGCCEEEEE-EEEECSCCHHHHHHHHHHHCCEEE
T ss_pred ccCCCCCCCCCHHHHHHHHHHCCcCchhcCCCCCCCC---CccCCCCCCceEeCe-EEEeCCCCHHHHHHHHHhcCCeEE
Confidence 47899999999999999977999999999999887 898766666788999 988874 2 9999999999999
Q ss_pred EEec-cccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCC-CcccccCceeE
Q psy4960 260 YLNH-RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGA-NACGIESYAYL 337 (341)
Q Consensus 260 ~~~~-~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~-n~Cgi~~~~~~ 337 (341)
+|++ .+|++|++|||.+ +.|+...++|||+|||||+++|++|||||||||++||++|||||+|+. |.|||++.+++
T Consensus 226 ~i~~~~~f~~Y~~Gvy~~--~~c~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~Cgi~~~~~~ 303 (310)
T 2o6x_A 226 AVDVESDFMMYRSGIYQS--QTCSPLRVNHAVLAVGYGTQGGTDYWIVKNSWGLSWGERGYIRMVRNRGNMCGIASLASL 303 (310)
T ss_dssp EECCCHHHHTEEEEEECC--SSCCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSEEE
T ss_pred EEecchhhhhCCCceecC--CCCCCCCCCEEEEEEEEeccCCceEEEEEeCCCCccCCCcEEEEEcCCCCcCCccceeeE
Confidence 9999 7999999999987 468766789999999999999999999999999999999999999998 89999999999
Q ss_pred Eee
Q psy4960 338 ASV 340 (341)
Q Consensus 338 ~~~ 340 (341)
|++
T Consensus 304 p~~ 306 (310)
T 2o6x_A 304 PMV 306 (310)
T ss_dssp EEE
T ss_pred EEe
Confidence 986
No 6
>1pci_A Procaricain; zymogen, hydrolase, thiol protease; 3.20A {Carica papaya} SCOP: d.3.1.1
Probab=100.00 E-value=3.1e-78 Score=573.77 Aligned_cols=289 Identities=28% Similarity=0.572 Sum_probs=249.1
Q ss_pred cchhHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHhhh------hcc--ccccCCCCCHHHHHHh-ccccCCCchhh
Q psy4960 35 DSIKQVDAFKTYIVKWNRTYTDDNEIKTRFEYFKQDGKETD------EYY--GTSGSSDRSPQEILQR-TGLRLTGKEKE 105 (341)
Q Consensus 35 ~~~~~~~~f~~f~~~~~K~Y~~~~e~~~R~~iF~~n~~~I~------~~y--g~N~fsD~t~eE~~~~-l~~~~~~~~~~ 105 (341)
.+..+..+|++|+++|+|.|.+.+|+.+|+.||++|++.|+ .+| |+|+|+|||.+||+++ ++...... .
T Consensus 14 ~e~~~~~~f~~~~~~~~k~Y~~~~E~~~R~~iF~~N~~~I~~~N~~~~~~~~g~N~FaDlt~eEf~~~~~g~~~~~~--~ 91 (322)
T 1pci_A 14 STERLIQLFNSWMLNHNKFYENVDEKLYRFEIFKDNLNYIDETNKKNNSYWLGLNEFADLSNDEFNEKYVGSLIDAT--I 91 (322)
T ss_dssp HHHHHHHHHHHHHHTTTCCCSSHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECSCTTTTSCHHHHHHHHCCCBCCCS--S
T ss_pred chHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEecCccccCCHHHHHHHhcCCCCccc--c
Confidence 44456789999999999999988899999999999999999 356 9999999999999987 55432211 0
Q ss_pred hhhhhhhhhhhhhcccCCCCCCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCC
Q psy4960 106 RLEADRERVKKFLNERKKGPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185 (341)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~ 185 (341)
...... .+. .....+||++||||++| +|+||||||.||||||||++++||++++|+++..+.||+|+|+||+.
T Consensus 92 ~~~~~~----~~~-~~~~~~lP~~~DwR~~g--~vt~VkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~lSeq~lvdC~~ 164 (322)
T 1pci_A 92 EQSYDE----EFI-NEDIVNLPENVDWRKKG--AVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCER 164 (322)
T ss_dssp CCCCSE----ECC-CCCCCCSCSCEETTTTT--CCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHSCT
T ss_pred cccccc----ccc-cccccCCCCeEecccCC--CCCCccccccCCccHHHHHHHHHHHHHHHHcCCccccCHHHHHhhcC
Confidence 000000 011 11123599999999999 99999999999999999999999999999999999999999999997
Q ss_pred CCCCCCCCcHHHHHHHHHHcCCCCCCCCCCcCCCCCcccccccc-ccceeeeccceeechH-H---HHHHHHhcCCeEEE
Q psy4960 186 GNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEK-EKAKVFVQDTWVTSGV-D---HMMHLLQSGPIGVY 260 (341)
Q Consensus 186 ~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~-~~~~~~i~~~y~~~~~-d---ik~~l~~~gPv~v~ 260 (341)
.+.||+||++..|++|+.++||++|++|||.+..+ .|.... ....+++.+ |..++. + |+++|++ |||+|+
T Consensus 165 ~~~gC~GG~~~~a~~yi~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~-~~~v~~~~e~~l~~~l~~-GPV~v~ 239 (322)
T 1pci_A 165 RSHGCKGGYPPYALEYVAKNGIHLRSKYPYKAKQG---TCRAKQVGGPIVKTSG-VGRVQPNNEGNLLNAIAK-QPVSVV 239 (322)
T ss_dssp TSCGGGCBCHHHHHHHHHHHCBCBTTTSCCCSSCC---CCTTTTCCSCCBCCCC-EEECCSSBHHHHHHHHHH-SCEEEE
T ss_pred CCCCCCCCCHHHHHHHHHHhCCCchhhCCCCCCCC---CCCCCCCCCceEEEee-EEEeCCCcHHHHHHHHHH-CCEEEE
Confidence 78899999999999999999999999999999888 898763 235678899 988875 2 9999986 999999
Q ss_pred Eec--cccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCC----CcccccCc
Q psy4960 261 LNH--RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGA----NACGIESY 334 (341)
Q Consensus 261 ~~~--~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~----n~Cgi~~~ 334 (341)
|++ .+|++|++|||.+ .|+. .++|||+|||||+++|.+|||||||||++||++|||||+|+. |.|||++.
T Consensus 240 i~~~~~~f~~Y~~Gvy~~---~c~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~~~~n~CgI~~~ 315 (322)
T 1pci_A 240 VESKGRPFQLYKGGIFEG---PCGT-KVDGAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKS 315 (322)
T ss_dssp ECTTCHHHHTEEEEEECC---SCCS-CCCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEEEEECCCSBSSCGGGGGGC
T ss_pred EecccccccccCCeEeCC---CCCC-CCCEEEEEEEEeccCCccEEEEEeCCCCcccCCeEEEEEcCCCCCCCcCCcccc
Confidence 999 5899999999986 5865 479999999999999999999999999999999999999996 89999999
Q ss_pred eeEEeeC
Q psy4960 335 AYLASVK 341 (341)
Q Consensus 335 ~~~~~~~ 341 (341)
++||++.
T Consensus 316 ~~yp~~~ 322 (322)
T 1pci_A 316 SYYPTKN 322 (322)
T ss_dssp CEEECCC
T ss_pred eeEEEeC
Confidence 9999873
No 7
>3tnx_A Papain; hydrolase, cytoplasm for recombinant expression; 2.62A {Carica papaya}
Probab=100.00 E-value=5.7e-78 Score=577.53 Aligned_cols=286 Identities=30% Similarity=0.557 Sum_probs=239.5
Q ss_pred ccchhHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHhhh------hcc--ccccCCCCCHHHHHHh-ccccCCCchh
Q psy4960 34 YDSIKQVDAFKTYIVKWNRTYTDDNEIKTRFEYFKQDGKETD------EYY--GTSGSSDRSPQEILQR-TGLRLTGKEK 104 (341)
Q Consensus 34 ~~~~~~~~~f~~f~~~~~K~Y~~~~e~~~R~~iF~~n~~~I~------~~y--g~N~fsD~t~eE~~~~-l~~~~~~~~~ 104 (341)
.++..+..+|++|+++|+|.|.+.+|+.+||.||++|++.|+ .+| |+|+|+|||.+||+++ ++........
T Consensus 57 ~s~~~~~~lf~~f~~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~~N~~~~sy~~g~N~FaDlT~eEf~~~~~~~~~~~~~~ 136 (363)
T 3tnx_A 57 TSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSNDEFKEKYTGSIAGNYTT 136 (363)
T ss_dssp SCHHHHHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHTTSCCSEEECSCTTTTSCHHHHHHHHSCSSCSCCCC
T ss_pred cCHHHHHHHHHHHHHHcCCcCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCeEEeccccccCCHHHHHHHhcccccccccc
Confidence 345567789999999999999999999999999999999998 556 9999999999999988 5543322210
Q ss_pred hhhhhhhhhhhhhhcccCCCCCCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcC
Q psy4960 105 ERLEADRERVKKFLNERKKGPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD 184 (341)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~ 184 (341)
....... .. .....+||++||||++| +|+||||||.||||||||++++||++++|+++..+.||+|+|+||+
T Consensus 137 ~~~~~~~-----~~-~~~~~~lP~s~DWR~~g--~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg~~~~LSeQ~LvdC~ 208 (363)
T 3tnx_A 137 TELSYEE-----VL-NDGDVNIPEYVDWRQKG--AVTPVKNQGSCGSAWAFSAVSTIESIIKIRTGNLNEYSEQELLDCD 208 (363)
T ss_dssp SSSSSSC-----CC-CCSCCCCCSCEEGGGGT--CCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHC
T ss_pred ccccccc-----cc-CcccCCCCcceecccCC--CCCCCccCCcCCchhhhhhcccHHHHHHHHcCCCCCcCHHHHhccc
Confidence 1110000 01 11224599999999999 9999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHHcCCCCCCCCCCcCCCCCccccccc-cccceeeeccceeechH-H---HHHHHHhcCCeEE
Q psy4960 185 HGNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYE-KEKAKVFVQDTWVTSGV-D---HMMHLLQSGPIGV 259 (341)
Q Consensus 185 ~~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~-~~~~~~~i~~~y~~~~~-d---ik~~l~~~gPv~v 259 (341)
..+.||+||.+..|+.|+.+.||++|++|||.+... .|... ......++.+ |..++. + ++.+| ..|||+|
T Consensus 209 ~~~~GC~GG~~~~a~~yi~~~Gi~~e~~yPY~~~~~---~c~~~~~~~~~~~~~~-~~~~~~~~e~~l~~~v-~~gPvsv 283 (363)
T 3tnx_A 209 RRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQR---YCRSREKGPYAAKTDG-VRQVQPYNEGALLYSI-ANQPVSV 283 (363)
T ss_dssp TTSCTTBCCCHHHHHHHHHHTCBCBTTTSCCCSSCC---CCCGGGGCSCSBCCCE-EEEECSSCHHHHHHHH-TTSCEEE
T ss_pred CCCCCCCCCChHHHHhHHHhcCccccccCCCcCcCC---CcccCCCCCceeeccc-eEEcchhhHHHHHHHH-HcCCcEE
Confidence 888999999999999999999999999999998877 66543 3334456666 776665 2 55555 4799999
Q ss_pred EEec--cccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCC----CcccccC
Q psy4960 260 YLNH--RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGA----NACGIES 333 (341)
Q Consensus 260 ~~~~--~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~----n~Cgi~~ 333 (341)
+|++ .+|++|++|||.. .|+. ..+|||+|||||+ +|||||||||++|||+|||||+||. |+|||++
T Consensus 284 ai~a~~~~F~~Y~sGVy~~---~~~~-~lnHaV~iVGyG~----~YWIVKNSWGt~WGe~GY~rI~Rg~~~~~~~CGI~~ 355 (363)
T 3tnx_A 284 VLEAAGKDFQLYRGGIFVG---PCGN-KVDHAVAAVGYGP----NYILIRNSWGTGWGENGYIRIKRGTGNSYGVCGLYT 355 (363)
T ss_dssp EECCCSHHHHTEEEEEECC---CCCS-CCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEECCSCCSSCGGGTTS
T ss_pred EEEecchhhhCCCCCEECC---CCCC-CCCeEEEEEEcCC----CcEEEEeCCCCccccCcEEEEEcCCCCCCCcCCccc
Confidence 9997 6899999999987 4654 5799999999984 5999999999999999999999997 4599999
Q ss_pred ceeEEee
Q psy4960 334 YAYLASV 340 (341)
Q Consensus 334 ~~~~~~~ 340 (341)
.++||+-
T Consensus 356 ~a~yPik 362 (363)
T 3tnx_A 356 SSFYPVK 362 (363)
T ss_dssp CEEEEEC
T ss_pred eeeeccc
Confidence 9999983
No 8
>1cs8_A Human procathepsin L; prosegment, propeptide, inhibition, hydrolase; HET: OCS; 1.80A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cjl_A 3hwn_A*
Probab=100.00 E-value=5.6e-78 Score=570.94 Aligned_cols=283 Identities=31% Similarity=0.564 Sum_probs=247.1
Q ss_pred HHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHhhh----------hcc--ccccCCCCCHHHHHHh-ccccCCCchhh
Q psy4960 39 QVDAFKTYIVKWNRTYTDDNEIKTRFEYFKQDGKETD----------EYY--GTSGSSDRSPQEILQR-TGLRLTGKEKE 105 (341)
Q Consensus 39 ~~~~f~~f~~~~~K~Y~~~~e~~~R~~iF~~n~~~I~----------~~y--g~N~fsD~t~eE~~~~-l~~~~~~~~~~ 105 (341)
+..+|++|+++|+|.| +.+|+..|+.||++|++.|+ .+| |+|+|+|||.+||+++ ++.+....
T Consensus 8 ~~~~f~~~~~~~~k~Y-~~~E~~~R~~iF~~N~~~I~~~N~~~~~g~~~~~~g~N~F~Dlt~eEf~~~~~g~~~~~~--- 83 (316)
T 1cs8_A 8 LEAQWTKWKAMHNRLY-GMNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKP--- 83 (316)
T ss_dssp GHHHHHHHHHHTTCCC-CTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCSEEECCCTTTTCCHHHHHHHHCCBCCCCC---
T ss_pred HHHHHHHHHHHhCCCC-CHHHHHHHHHHHHHHHHHHHHhhhccccCCcceEEccCccCCCCHHHHHHHhcCCCCCcc---
Confidence 5679999999999999 77788999999999999998 146 9999999999999876 55433221
Q ss_pred hhhhhhhhhhhhhcccCCCCCCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCC
Q psy4960 106 RLEADRERVKKFLNERKKGPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185 (341)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~ 185 (341)
. ... .+... ...+||++||||++| +|+||||||.||||||||++++||++++|++++.+.||+|+|+||+.
T Consensus 84 ~-~~~-----~~~~~-~~~~lP~~~DwR~~g--~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~g~~~~LSeq~lvdC~~ 154 (316)
T 1cs8_A 84 R-KGK-----VFQEP-LFYEAPRSVDWREKG--YVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSG 154 (316)
T ss_dssp S-CCE-----ECCCC-TTCCCCSCEEGGGGT--CCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCG
T ss_pred c-cCc-----cccCc-cccCCCCcEecCCCC--CcCCCCcccCCccHHHHHHHHHHHHHHHHHcCCCcCcCHHHHHHhcc
Confidence 0 000 01111 123599999999999 99999999999999999999999999999999999999999999985
Q ss_pred --CCCCCCCCcHHHHHHHHH-HcCCCCCCCCCCcCCCCCccccccccccceeeeccceeechH--H-HHHHHHhcCCeEE
Q psy4960 186 --GNLNCNGGNIDVAFEYVK-QYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV--D-HMMHLLQSGPIGV 259 (341)
Q Consensus 186 --~~~gC~GG~~~~a~~~~~-~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~--d-ik~~l~~~gPv~v 259 (341)
.+.||+||++..|++|+. +.||++|++|||.+..+ .|...+....+++.+ |..++. + |+++|+++|||+|
T Consensus 155 ~~g~~gC~GG~~~~a~~yi~~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~v~~~~~~ik~~l~~~GPV~v 230 (316)
T 1cs8_A 155 PQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE---SCKYNPKYSVANDAG-FVDIPKQEKALMKAVATVGPISV 230 (316)
T ss_dssp GGTCCGGGCBCHHHHHHHHHHHTCEEBTTTSCCCSSCC---CCCCCGGGEEECCCC-EEECCSCHHHHHHHHHHHCCEEE
T ss_pred ccCCCCCCCCCHHHHHHHHHHhCCcCchhccCCCCCCC---CcCCCCccceeEecc-EEEeCCCHHHHHHHHHhcCCEEE
Confidence 478999999999999997 56999999999999888 898776666788999 998874 3 9999999999999
Q ss_pred EEec--cccccCCCCcccCCCCCCCCCCCCeEEEEEEEe---ec-CCeeEEEEEcCCCCCCCCCcEEEEEeCC-Cccccc
Q psy4960 260 YLNH--RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYG---EK-NGILTWIVRNSWGDIGPDHGYFQIERGA-NACGIE 332 (341)
Q Consensus 260 ~~~~--~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg---~~-~g~~ywivkNSWG~~WG~~GY~~i~r~~-n~Cgi~ 332 (341)
+|++ .+|++|++|||.. +.|+...++|||+||||| ++ +|++|||||||||++||++|||||+|+. |.|||+
T Consensus 231 ~i~~~~~~f~~Y~~Gvy~~--~~c~~~~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~WGe~GY~~i~r~~~n~CgI~ 308 (316)
T 1cs8_A 231 AIDAGHESFLFYKEGIYFE--PDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIA 308 (316)
T ss_dssp EECCCSHHHHTEEEEEECC--TTCCSSCCCEEEEEEEEEEECCSSCCEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTT
T ss_pred EEecCChhhccccCceECC--CCCCCCCCCEEEEEEEecCCcccCCCCcEEEEEcCCCCCcccCCEEEEECCCCCccCcc
Confidence 9999 3899999999987 468766799999999999 76 7999999999999999999999999998 899999
Q ss_pred CceeEEee
Q psy4960 333 SYAYLASV 340 (341)
Q Consensus 333 ~~~~~~~~ 340 (341)
+.+++|++
T Consensus 309 ~~~~~p~~ 316 (316)
T 1cs8_A 309 SAASYPTV 316 (316)
T ss_dssp TSCEEECC
T ss_pred ceeeEeeC
Confidence 99999985
No 9
>1xkg_A DER P I, major mite fecal allergen DER P 1; major allergen, cysteine protease, house DUST mite, dermatop pteronyssinus; 1.61A {Dermatophagoides pteronyssinus} SCOP: d.3.1.1
Probab=100.00 E-value=3.8e-77 Score=563.43 Aligned_cols=282 Identities=27% Similarity=0.435 Sum_probs=243.4
Q ss_pred HHHHHHHHhCCccCChHHHHHHHHHHHHHHHhhhhcc-ccccCCCCCHHHHHHh-ccccCCCchhhhhhhhhhhhhhhhc
Q psy4960 42 AFKTYIVKWNRTYTDDNEIKTRFEYFKQDGKETDEYY-GTSGSSDRSPQEILQR-TGLRLTGKEKERLEADRERVKKFLN 119 (341)
Q Consensus 42 ~f~~f~~~~~K~Y~~~~e~~~R~~iF~~n~~~I~~~y-g~N~fsD~t~eE~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~ 119 (341)
+|++||++|+|.|.+.+|+..|+.||++|++.|+..- |+|+|+|||.+||+++ ++.+... ..+. ... .+..
T Consensus 7 ~f~~~~~~~~K~Y~~~~E~~~R~~iF~~N~~~I~~N~~g~N~F~Dlt~eEf~~~~~~~~~~~---~~~~-~~~---~~~~ 79 (312)
T 1xkg_A 7 TFEEYKKAFNKSYATFEDEEAARKNFLESVKYVQSNGGAINHLSDLSLDEFKNRFLMSAEAF---EHLK-TQF---DLNA 79 (312)
T ss_dssp SHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHCCCCCTTTTSCHHHHHHHHSBCHHHH---HHHH-HHH---C---
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHHHHHHHhccCCCCcccCCCHHHHHHHhcCCCCcc---cccc-CCc---cccc
Confidence 5999999999999998899999999999999998511 9999999999999985 6522111 0100 000 1110
Q ss_pred c----cCCCCCCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCCCCCCCCCCcH
Q psy4960 120 E----RKKGPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLNCNGGNI 195 (341)
Q Consensus 120 ~----~~~~~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~ 195 (341)
. ....+||++||||++| +|+||||||.||||||||++++||++++|+++..+.||+|+|+||+ ...||+||++
T Consensus 80 ~~~~~~~~~~lP~~~DwR~~g--~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~g~~~~LSeq~lvdC~-~~~GC~GG~~ 156 (312)
T 1xkg_A 80 ETNACSINGNAPAEIDLRQMR--TVTPIRMQGGCGSAWAFSGVAATESAYLAYRDQSLDLAEQELVDCA-SQHGCHGDTI 156 (312)
T ss_dssp --CBCCCCSCCCSCEETTTTT--CCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHT-CSSTTBCCCH
T ss_pred ccccccccccCCCccccccCC--CcCCccccCCCCccHHHHHHHHHHHHHHHHhCCCCCcCHHHHHhcc-CCCCCCCCCH
Confidence 1 0113599999999999 9999999999999999999999999999999999999999999999 2289999999
Q ss_pred HHHHHHHHHcCCCCCCCCCCcCCCCCccccccccccceeeeccceeechH---H-HHHHHHh-cCCeEEEEec-c--ccc
Q psy4960 196 DVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV---D-HMMHLLQ-SGPIGVYLNH-R--LIE 267 (341)
Q Consensus 196 ~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~---d-ik~~l~~-~gPv~v~~~~-~--~f~ 267 (341)
..|++|+.+.||++|++|||.+..+ .|. ......+++.+ |..++. + |+++|++ +|||+|+|++ . +|+
T Consensus 157 ~~a~~yi~~~Gi~~e~~yPY~~~~~---~C~-~~~~~~~~i~~-y~~v~~~~~~~ik~al~~~~GPV~v~i~~~~~~~f~ 231 (312)
T 1xkg_A 157 PRGIEYIQHNGVVQESYYRYVAREQ---SCR-RPNAQRFGISN-YCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFR 231 (312)
T ss_dssp HHHHHHHHHHCEEBGGGSCCCSSCC---CCC-CCSSCEECCSE-EEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHH
T ss_pred HHHHHHHHHcCCCccccCCccCCCC---CCC-CCCCceEEEee-EEEeCCCCHHHHHHHHHhcCCCEEEEEEeccccccc
Confidence 9999999999999999999999888 898 55556788999 988874 2 9999999 9999999999 5 899
Q ss_pred cCCCCcccCCCCCCC-CCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCCCcccccCceeEEeeC
Q psy4960 268 SYDGNPIRRNDWACN-PHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLASVK 341 (341)
Q Consensus 268 ~y~~Gv~~~~~~~~~-~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~n~Cgi~~~~~~~~~~ 341 (341)
+|++|||.. +.|+ ... +|||+|||||+++|.+|||||||||++||++|||||+|+.|.|||++.+++|++.
T Consensus 232 ~Y~~GVy~~--~~c~~~~~-~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~GY~~i~r~~n~CgI~~~~~~~~~~ 303 (312)
T 1xkg_A 232 HYDGRTIIQ--RDNGYQPN-YHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVILG 303 (312)
T ss_dssp TCCSSSCBC--CCCSSCCE-EEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTCCEEEECT
T ss_pred ccCCcEEcC--CCCCCCcC-ceEEEEEEEeccCCceEEEEEeCCCCcccCCcEEEEEcCCCcccccceeEEeecc
Confidence 999999988 4686 546 9999999999999999999999999999999999999999999999999999863
No 10
>3pdf_A Cathepsin C, dipeptidyl peptidase 1; two domains, cystein protease, hydrolase-hydrolase inhibitor; HET: LXV NAG; 1.85A {Homo sapiens} PDB: 1jqp_A* 2djf_B* 1k3b_B* 2djg_B* 2djf_A* 1k3b_A* 2djg_A* 2djf_C* 1k3b_C* 2djg_C*
Probab=100.00 E-value=9e-69 Score=526.16 Aligned_cols=270 Identities=26% Similarity=0.507 Sum_probs=185.5
Q ss_pred HHHHHHHHHHHHHHHhhh------hcc--c-cccCCCCCHHHHHHh-ccccCCCchhhhhhhhhhhhhhhhcccCCCCCC
Q psy4960 58 NEIKTRFEYFKQDGKETD------EYY--G-TSGSSDRSPQEILQR-TGLRLTGKEKERLEADRERVKKFLNERKKGPLP 127 (341)
Q Consensus 58 ~e~~~R~~iF~~n~~~I~------~~y--g-~N~fsD~t~eE~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP 127 (341)
.|+..|+.||++|++.|+ .+| | +|+|+|||.+||+++ ++.+..... .. . ..... .. .....+||
T Consensus 135 ~~~~~R~~if~~N~~~I~~~N~~~~~~~~~~~n~faDlT~eEf~~~~~~~~~~~~~-~~-~-~~~~~--~~-~~~~~~lP 208 (441)
T 3pdf_A 135 SQEKYSNRLYKYDHNFVKAINAIQKSWTATTYMEYETLTLGDMIRRSGGHSRKIPR-PK-P-APLTA--EI-QQKILFLP 208 (441)
T ss_dssp -----------------------------------------------------------------------------CCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHccCCceEeecccccccCCHHHHHHHhCCCcccccc-cc-c-Ccccc--cc-ccccccCC
Confidence 466789999999999999 466 6 899999999999988 333221110 00 0 00000 00 11224599
Q ss_pred CeeeccccC-ccccccccccCCccchHHHHHHHHHHHHHHHHhCCCC--cCChhHHhhcCCCCCCCCCCcHHHH-HHHHH
Q psy4960 128 KSLDWRQSK-VKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLY--PLSKSQLVECDHGNLNCNGGNIDVA-FEYVK 203 (341)
Q Consensus 128 ~~~Dwr~~g-~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~--~lS~q~l~dc~~~~~gC~GG~~~~a-~~~~~ 203 (341)
++||||+.+ .++|+||||||.||||||||++++||++++|+++... .||+|+|+||+..+.||+||++..| ++|++
T Consensus 209 ~s~DwR~~~g~~~VtpVkdQG~CGSCWAFsa~~alE~~~~i~tg~~~~~~LSeQ~LvdC~~~~~GC~GG~~~~aa~~yi~ 288 (441)
T 3pdf_A 209 TSWDWRNVHGINFVSPVRNQASCGSCYSFASMGMLEARIRILTNNSQTPILSPQEVVSCSQYAQGCEGGFPYLIAGKYAQ 288 (441)
T ss_dssp SCEETTCBTTBCCSCCCCBCTTSBCHHHHHHHHHHHHHHHHHHTTSCCCCBCHHHHHHHCTTSCTTBCCCHHHHTTHHHH
T ss_pred CCEECCcCCCCCccCcccccCCCchHHHHHHHHHHHHHHHHhccCCCccccCHHHHHhhccCCCCCCCCchhHHHHHHHH
Confidence 999999963 3479999999999999999999999999999998754 5999999999988899999999987 89999
Q ss_pred HcCCCCCCCCCCcCCCCCccccccccccceeeeccceeech------H-H-HHHHHHhcCCeEEEEec-cccccCCCCcc
Q psy4960 204 QYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSG------V-D-HMMHLLQSGPIGVYLNH-RLIESYDGNPI 274 (341)
Q Consensus 204 ~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~------~-d-ik~~l~~~gPv~v~~~~-~~f~~y~~Gv~ 274 (341)
+.||++|++|||.+..+ .|........+.+.+ |..++ . + |+++|+++|||+|+|++ ++|++|++|||
T Consensus 289 ~~Gi~tE~~yPY~~~~~---~C~~~~~~~~~~~~~-y~~v~~~~~~~~e~~ik~al~~~GPVsvai~a~~~F~~Y~sGVy 364 (441)
T 3pdf_A 289 DFGLVEEACFPYTGTDS---PCKMKEDCFRYYSSE-YHYVGGFYGGCNEALMKLELVHHGPMAVAFEVYDDFLHYKKGIY 364 (441)
T ss_dssp HTCBCBGGGSCCCSSCC---CSCCCSSCCCBCEEE-EEETTSSTTCCCHHHHHHHHHHHCCEEEEECCCGGGGGCCSSEE
T ss_pred hcCCCcHHHeeecccCC---CCCCccccceeeecc-EEEeCCccCCCcHHHHHHHHHHCCCeEEEEEecccccccCCceE
Confidence 99999999999999887 898766666677777 77774 1 2 99999999999999999 89999999999
Q ss_pred cCCCCCCCC-----CCCCeEEEEEEEeec--CCeeEEEEEcCCCCCCCCCcEEEEEeCCCcccccCceeEEe
Q psy4960 275 RRNDWACNP-----HKLDHAVAIVGYGEK--NGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLAS 339 (341)
Q Consensus 275 ~~~~~~~~~-----~~~~Hav~iVGyg~~--~g~~ywivkNSWG~~WG~~GY~~i~r~~n~Cgi~~~~~~~~ 339 (341)
..+ .|.. ..++|||+|||||++ +|++|||||||||++||++|||||+|+.|+|||++.++++.
T Consensus 365 ~~~--~~~~~~~~~~~~~HaV~iVGyG~~~~~G~~YWIVkNSWG~~WGe~GYfri~rg~n~CGI~s~~~a~~ 434 (441)
T 3pdf_A 365 HHT--GLRDPFNPFELTNHAVLLVGYGTDSASGMDYWIVKNSWGTGWGENGYFRIRRGTDECAIESIAVAAT 434 (441)
T ss_dssp CCC-----CCCCCCCCCCEEEEEEEEEECTTTCCEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSCCEEEE
T ss_pred ecC--CCCcccCCCCcCCeEEEEEEecccCCCCceEEEEEcCCCCCcCCCeEEEEEcCCCccCCCCceEEee
Confidence 873 3321 358999999999974 78999999999999999999999999999999999999875
No 11
>3hhi_A Cathepsin B-like cysteine protease; occluding loop, hydrolase, THIO protease; HET: 074; 1.60A {Trypanosoma brucei} SCOP: d.3.1.0 PDB: 4hwy_A* 3mor_A*
Probab=100.00 E-value=3.7e-68 Score=505.00 Aligned_cols=267 Identities=24% Similarity=0.366 Sum_probs=182.1
Q ss_pred HHHHHHHHHHhhh-------hcc--ccc-cCCCCCHHHHHHhccccCCCchhhhhhhhhhhhhhhhcccCCCCCCCeeec
Q psy4960 63 RFEYFKQDGKETD-------EYY--GTS-GSSDRSPQEILQRTGLRLTGKEKERLEADRERVKKFLNERKKGPLPKSLDW 132 (341)
Q Consensus 63 R~~iF~~n~~~I~-------~~y--g~N-~fsD~t~eE~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dw 132 (341)
|...+..+.+.|+ .+| |+| +|+|||.+||+++++........+......... .....+||++|||
T Consensus 4 ~~~a~~~~~~~i~~~N~~~~~~~~~~~n~~f~dlt~eE~~~~~g~~~~~~~~~~~~~~~~~~-----~~~~~~lP~s~Dw 78 (325)
T 3hhi_A 4 AEDAPVLSKAFVDRVNRLNRGIWKAKYDGVMQNITLREAKRLNGVIKKNNNASILPKRRFTE-----EEARAPLPSSFDS 78 (325)
T ss_dssp ----------------------------------------------------CCSCBCCCCH-----HHHHCCCCSCEEH
T ss_pred ccccccccHHHHHHHHhCCCCceEEecccccccCCHHHHHHHhCCCCCCcccccccCccccc-----cccccCCCCcEeh
Confidence 4444555555555 467 999 899999999998865433211000000000000 0011359999999
Q ss_pred ccc----CccccccccccCCccchHHHHHHHHHHHHHHHHhCC-CCcCChhHHhhcCC-CCCCCCCCcHHHHHHHHHHcC
Q psy4960 133 RQS----KVKVLNPVESQGRCGSCWAFATTAILESQVALLKKT-LYPLSKSQLVECDH-GNLNCNGGNIDVAFEYVKQYG 206 (341)
Q Consensus 133 r~~----g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~-~~~lS~q~l~dc~~-~~~gC~GG~~~~a~~~~~~~G 206 (341)
|++ + .|+||||||.||||||||++++||++++|+++. .+.||+|+|+||+. .+.||+||++..|++|++++|
T Consensus 79 R~~w~~~g--~vtpVkdQg~CGSCWAFsa~~alE~~~~i~~~~~~~~LSeQ~LvdC~~~~~~GC~GG~~~~A~~yi~~~G 156 (325)
T 3hhi_A 79 AEAWPNCP--TIPQIADQSACGSCWAVAAASAMSDRFCTMGGVQDVHISAGDLLACCSDCGDGCNGGDPDRAWAYFSSTG 156 (325)
T ss_dssp HHHSTTCT--TTTCCCBCCSSBCHHHHHHHHHHHHHHHHTSSCSSCCBCHHHHHHHCGGGBCTTBCBCHHHHHHHHHHTC
T ss_pred hHhcCCCC--ccccccCCCCccccHHHHHHHHHHHHHHHHhCCCccccCHHHHHHhccCCCCCCCCCCHHHHHHHHHHhC
Confidence 998 6 899999999999999999999999999999997 89999999999986 478999999999999999999
Q ss_pred CCCCCCCCCc-CC-----C--CCcccccc----------c---c---ccceeeeccceeechH--HHHHHHHhcCCeEEE
Q psy4960 207 LESQADYPYR-NK-----E--NITFRCTY----------E---K---EKAKVFVQDTWVTSGV--DHMMHLLQSGPIGVY 260 (341)
Q Consensus 207 i~~e~~yPY~-~~-----~--~~~~~C~~----------~---~---~~~~~~i~~~y~~~~~--dik~~l~~~gPv~v~ 260 (341)
|++|++|||. +. . .....|.. . . ....+.+.+ |. +.. +||++|+++|||+|+
T Consensus 157 i~~e~~yPY~~~~c~~~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~-y~-v~~~~~i~~~i~~~GPV~v~ 234 (325)
T 3hhi_A 157 LVSDYCQPYPFPHCSHHSKSKNGYPPCSQFNFDTPKCDYTCDDPTIPVVNYRSWTS-YA-LQGEDDYMRELFFRGPFEVA 234 (325)
T ss_dssp BCBTTTSCCSSCCCBSSSCCTTCCCBGGGCCCCCCCCCSSCSSTTSCCCCBCEEEE-EE-ECSHHHHHHHHHHHCCEEEE
T ss_pred CCcccccCCccccccccccccccCCCCCCcccCCcchhhcccccccccceEEeecc-eE-eCCHHHHHHHHHHCCCEEEE
Confidence 9999999998 32 0 00114541 0 0 011234556 66 433 399999999999999
Q ss_pred Eec-cccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCCCcccccCceeEEe
Q psy4960 261 LNH-RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLAS 339 (341)
Q Consensus 261 ~~~-~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~n~Cgi~~~~~~~~ 339 (341)
|++ ++|++|++|||.. .|....++|||+|||||+++|++|||||||||++||++|||||+|+.|+|||++.+++++
T Consensus 235 i~~~~~f~~Y~~GVy~~---~~~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~GY~~i~rg~n~CGI~~~~~~g~ 311 (325)
T 3hhi_A 235 FDVYEDFIAYNSGVYHH---VSGQYLGGHAVRLVGWGTSNGVPYWKIANSWNTEWGMDGYFLIRRGSSECGIEDGGSAGI 311 (325)
T ss_dssp EEEEHHHHTCCSSEECC---CSCCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTSCEEEEE
T ss_pred EEeccccccccCceecC---CCCCCCCCEEEEEEEEEecCCceEEEEEeCCCCCcccCCEEEEEcCCCeecCccceEEee
Confidence 999 8999999999987 344445799999999999999999999999999999999999999999999999999998
Q ss_pred eC
Q psy4960 340 VK 341 (341)
Q Consensus 340 ~~ 341 (341)
++
T Consensus 312 p~ 313 (325)
T 3hhi_A 312 PL 313 (325)
T ss_dssp EC
T ss_pred cC
Confidence 64
No 12
>1m6d_A Cathepsin F, catsf; papain family cysteine protease, hydrolase; HET: MYP; 1.70A {Homo sapiens} SCOP: d.3.1.1
Probab=100.00 E-value=7.6e-66 Score=463.05 Aligned_cols=210 Identities=37% Similarity=0.697 Sum_probs=194.0
Q ss_pred CCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCCCCCCCCCCcHHHHHHHHHHc
Q psy4960 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVKQY 205 (341)
Q Consensus 126 lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~ 205 (341)
||++||||+++ +|+||||||.||||||||++++||++++++++..+.||+|+|+||+..+.||+||++..|++|++++
T Consensus 1 lP~~~DwR~~~--~vt~VkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~i~~~ 78 (214)
T 1m6d_A 1 APPEWDWRSKG--AVTKVKDQGMCGSCWAFSVTGNVEGQWFLNQGTLLSLSEQELLDCDKMDKACMGGLPSNAYSAIKNL 78 (214)
T ss_dssp CCSCEEGGGGT--CCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCSSSCTTBCCCHHHHHHHHHHH
T ss_pred CCCcCcCCCCC--CCCCCccCCCCchHHHHHHHHHHHHHHHHHcCCCcccCHHHHHHhcCCCCCCCCCCHHHHHHHHHHh
Confidence 79999999999 9999999999999999999999999999999999999999999999778899999999999999987
Q ss_pred -CCCCCCCCCCcCCCCCccccccccccceeeeccceeechH---HHHHHHHhcCCeEEEEeccccccCCCCcccCCCCCC
Q psy4960 206 -GLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV---DHMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWAC 281 (341)
Q Consensus 206 -Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~---dik~~l~~~gPv~v~~~~~~f~~y~~Gv~~~~~~~~ 281 (341)
|+++|++|||.+... .|........+++.+ +..++. +||++|+++|||+|+|++..|++|++|||.++...|
T Consensus 79 ~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~i~~~~~~ik~~l~~~GPV~v~i~~~~f~~Y~~Giy~~~~~~c 154 (214)
T 1m6d_A 79 GGLETEDDYSYQGHMQ---SCQFSAEKAKVYIQD-SVELSQNEQKLAAWLAKRGPISVAINAFGMQFYRHGISRPLRPLC 154 (214)
T ss_dssp TCBCBTTTSCCCSSCC---CCCCCGGGCCBCCSE-EEECCSCHHHHHHHHHHHCCEEEEECTHHHHHCCSSEECCCGGGS
T ss_pred cCcccccCcCcCCCCC---cCCCCcccceEEecC-EEEeChHHHHHHHHHHhCCCEEEEEEechhhhcCCceecCCCCcC
Confidence 999999999998887 898766666678888 888865 299999999999999999669999999998743458
Q ss_pred CCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCCCcccccCceeEEeeC
Q psy4960 282 NPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLASVK 341 (341)
Q Consensus 282 ~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~n~Cgi~~~~~~~~~~ 341 (341)
+...++|||+|||||+++|.+|||||||||++||++|||||+|+.|.|||++.+.+|+++
T Consensus 155 ~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~Cgi~~~~~~~~~~ 214 (214)
T 1m6d_A 155 SPWLIDHAVLLVGYGQRSDVPFWAIKNSWGTDWGEKGYYYLHRGSGACGVNTMASSAVVD 214 (214)
T ss_dssp CTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSCGGGTTTTCEEEECC
T ss_pred CCCcCCEEEEEEEEeecCCcEEEEEEeCCCCCcccCcEEEEEcCCCccccCceeEEEEeC
Confidence 766789999999999999999999999999999999999999999999999999999974
No 13
>3kwz_A Cathepsin K; enzyme inhibitor, covalent reversible inhibitor, disease mutation, disulfide bond, glycoprotein, hydrolase, lysosome, protease; HET: KWZ; 1.49A {Homo sapiens} PDB: 1au0_A* 1au2_A* 1au3_A* 1au4_A* 1ayu_A* 1ayv_A* 1ayw_A* 1bgo_A* 1atk_A* 1nl6_A* 1nlj_A* 1q6k_A* 1mem_A* 1yk7_A* 1yk8_A* 1yt7_A* 2ato_A* 2aux_A* 2auz_A* 2bdl_A* ...
Probab=100.00 E-value=1e-65 Score=462.53 Aligned_cols=207 Identities=34% Similarity=0.680 Sum_probs=194.7
Q ss_pred CCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCCCCCCCCCCcHHHHHHHHHHc
Q psy4960 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVKQY 205 (341)
Q Consensus 126 lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~ 205 (341)
||++||||+++ +|+||||||.||||||||++++||++++++++..+.||+|+|+||+..+.||+||++..|++|++++
T Consensus 1 lP~~~Dwr~~~--~v~pvkdQg~cGsCWAfa~~~~~e~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~ 78 (215)
T 3kwz_A 1 APDSVDYRKKG--YVTPVKNQGQCGSCWAFSSVGALEGQLKKKTGKLLNLSPQNLVDCVSENDGCGGGYMTNAFQYVQKN 78 (215)
T ss_dssp CTTCEETTTTT--CCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHH
T ss_pred CCCCCccCcCC--CCCCcccCCCCcHHHHHHHHHHHHHHHHHHcCCCcccCHHHHHHhcCCCCCCCCCCHHHHHHHHHHh
Confidence 79999999999 9999999999999999999999999999999999999999999999878999999999999999988
Q ss_pred -CCCCCCCCCCcCCCCCccccccccccceeeeccceeechH---H-HHHHHHhcCCeEEEEec--cccccCCCCcccCCC
Q psy4960 206 -GLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV---D-HMMHLLQSGPIGVYLNH--RLIESYDGNPIRRND 278 (341)
Q Consensus 206 -Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~---d-ik~~l~~~gPv~v~~~~--~~f~~y~~Gv~~~~~ 278 (341)
|+++|++|||.+... .|...+.....++.+ |..++. + ||++|+++|||+++|++ ++|+.|++|||..
T Consensus 79 ~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~v~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~~-- 152 (215)
T 3kwz_A 79 RGIDSEDAYPYVGQEE---SCMYNPTGKAAKCRG-YREIPEGNEKALKRAVARVGPVSVAIDASLTSFQFYSKGVYYD-- 152 (215)
T ss_dssp TCEEBTTTSCCCSSCC---CCCCCGGGEEECCCC-EEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECC--
T ss_pred CCccccccCCCccCCC---ccccCCCCceeEecc-eEEeCCCCHHHHHHHHHHCCCEEEEEeechhhhhcccCCeECC--
Confidence 999999999999888 899877777788999 999974 2 99999999999999999 4899999999987
Q ss_pred CCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCC-CcccccCceeEEee
Q psy4960 279 WACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGA-NACGIESYAYLASV 340 (341)
Q Consensus 279 ~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~-n~Cgi~~~~~~~~~ 340 (341)
+.|+...++|||+|||||++++++|||||||||++||++|||||+|+. |+|||++++++|++
T Consensus 153 ~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WG~~Gy~~i~r~~~n~Cgi~~~~~~p~~ 215 (215)
T 3kwz_A 153 ESCNSDNLNHAVLAVGYGIQKGNKHWIIKNSWGENWGNKGYILMARNKNNACGIANLASFPKM 215 (215)
T ss_dssp TTCCTTCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEESSSSSGGGTTSSCEEECC
T ss_pred CCCCCChhhCEEEEEEEeccCCceEEEEECCcCcccccCCEEEEecCCCCccCcCCceeeeeC
Confidence 468666799999999999999999999999999999999999999998 89999999999985
No 14
>3i06_A Cruzipain; autocatalytic cleavage, glycoprotein, protease, thiol protease, zymogen; HET: QL2; 1.10A {Trypanosoma cruzi} SCOP: d.3.1.1 PDB: 1ewm_A* 1ewo_A* 1ewl_A* 1f29_A* 1ewp_A* 1f2b_A* 1f2c_A* 1f2a_A* 1me4_A* 1u9q_X* 2aim_A* 2efm_A* 2oz2_A* 1me3_A* 3kku_A* 3lxs_A* 1aim_A* 3iut_A* 3hd3_A* 2p86_A* ...
Probab=100.00 E-value=1.2e-65 Score=462.17 Aligned_cols=208 Identities=32% Similarity=0.628 Sum_probs=191.6
Q ss_pred CCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCCCCCCCCCCcHHHHHHHHHHc
Q psy4960 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVKQY 205 (341)
Q Consensus 126 lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~ 205 (341)
||++||||++| +|+||||||.||||||||++++||++++++++..+.||+|+|+||+..+.||+||++..|++|++++
T Consensus 1 lP~~~Dwr~~g--~vtpVkdQg~cGsCWAfa~~~ale~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~y~~~~ 78 (215)
T 3i06_A 1 APAAVDWRARG--AVTAVKDQGQCGSCWAFSAIGNVECQWFLAGHPLTNLSEQMLVSCDKTDSGCSGGLMNNAFEWIVQE 78 (215)
T ss_dssp CCSEEEGGGGT--CCCCCCBCCSSCCHHHHHHHHHHHHHHHHTTSCCCCCCHHHHHHHCSSSCGGGCCCHHHHHHHHHHH
T ss_pred CCCcccCCcCC--CCCCCCCCCCCccHHHHHHHHHHHHHHHHhCCCCCccCHHHHhccCCCCCCCCCCCHHHHHHHHHHh
Confidence 69999999999 9999999999999999999999999999999999999999999999888999999999999999986
Q ss_pred ---CCCCCCCCCCcCCCCCccccccccccceeeeccceeechH--H-HHHHHHhcCCeEEEEeccccccCCCCcccCCCC
Q psy4960 206 ---GLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV--D-HMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDW 279 (341)
Q Consensus 206 ---Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~--d-ik~~l~~~gPv~v~~~~~~f~~y~~Gv~~~~~~ 279 (341)
|+++|++|||.......+.|........+++.+ |..++. + |+++|+++|||+++|++++|++|++|||..
T Consensus 79 ~~gGi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~-~~~v~~~~~~ik~~l~~~gPV~v~~~~~~f~~Y~~Giy~~--- 154 (215)
T 3i06_A 79 NNGAVYTEDSYPYASGEGISPPCTTSGHTVGATITG-HVELPQDEAQIAAWLAVNGPVAVAVDASSWMTYTGGVMTS--- 154 (215)
T ss_dssp STTEEEC-CCSCCCCTTSCCCCCCCSSCCEEEEEEE-EEECCSCHHHHHHHHHHHCCEEEEECCTTGGGCCSSEECS---
T ss_pred ccccccccCccCCcCCCCCCCccccCCcccceEecc-eEEeCChHHHHHHHHHHCCCEEEEEEchHHhcCCCCcccC---
Confidence 799999999997665555898766666788999 988875 3 999999999999999998999999999964
Q ss_pred CCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCCCcccccCceeEEee
Q psy4960 280 ACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLASV 340 (341)
Q Consensus 280 ~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~n~Cgi~~~~~~~~~ 340 (341)
|....++|||+|||||++++++|||||||||++||++|||||+|+.|+|||++++++|++
T Consensus 155 -~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~rg~n~cgi~~~~~~~~~ 214 (215)
T 3i06_A 155 -CVSEQLDHGVLLVGYNDSAAVPYWIIKNSWTTQWGEEGYIRIAKGSNQCLVKEEASSAVV 214 (215)
T ss_dssp -CCCSCCCEEEEEEEEESSSSSCEEEEECSBCTTSTBTTEEEEESSSCGGGTTSSEEEEEE
T ss_pred -CCCCccCcEEEEEEEeccCCcEEEEEECCCCCCcccCceEEEecCCCeecCCCceeEEec
Confidence 555568999999999999999999999999999999999999999999999999999986
No 15
>3ovx_A Cathepsin S; hydrolase, covalent inhibitor, aldehyde warhead is covalently bound to Cys25, lysosomeal protein; HET: O64; 1.49A {Homo sapiens} SCOP: d.3.1.1 PDB: 2h7j_A* 2f1g_A* 2hh5_B* 2hhn_A* 2hxz_A* 2op3_A* 2frq_A* 2fra_A* 2fq9_A* 2ft2_A* 2fud_A* 2g7y_A* 1ms6_A* 2r9m_A* 2r9n_A* 2r9o_A* 3n3g_A* 3n4c_A* 3mpe_A* 1nqc_A* ...
Probab=100.00 E-value=1.4e-64 Score=456.11 Aligned_cols=206 Identities=34% Similarity=0.729 Sum_probs=191.7
Q ss_pred CCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcC-C--CCCCCCCCcHHHHHHHH
Q psy4960 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD-H--GNLNCNGGNIDVAFEYV 202 (341)
Q Consensus 126 lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~-~--~~~gC~GG~~~~a~~~~ 202 (341)
||++||||+++ +|+||||||.||||||||++++||++++++++..+.||+|+|+||+ . .+.||+||++..|++|+
T Consensus 2 lP~~~DwR~~~--~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~~gC~GG~~~~a~~~~ 79 (218)
T 3ovx_A 2 LPDSVDWREKG--CVTEVKYQGSCGACWAFSAVGALEAQLKLKTGKLVSLSAQNLVDCSTEKYGNKGCNGGFMTTAFQYI 79 (218)
T ss_dssp CCSCEEGGGGT--CCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHSCGGGTCCGGGCCCHHHHHHHH
T ss_pred CCCCCCcccCC--CCCCCccCCCCccHHHHHHHHHHHHHHHHHcCCccccCHHHheeccCCcCCCCCCCCCCHHHHHHHH
Confidence 89999999999 9999999999999999999999999999999999999999999998 2 47899999999999999
Q ss_pred HH-cCCCCCCCCCCcCCCCCccccccccccceeeeccceeechH---H-HHHHHHhcCCeEEEEec--cccccCCCCccc
Q psy4960 203 KQ-YGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV---D-HMMHLLQSGPIGVYLNH--RLIESYDGNPIR 275 (341)
Q Consensus 203 ~~-~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~---d-ik~~l~~~gPv~v~~~~--~~f~~y~~Gv~~ 275 (341)
.+ .|+++|++|||.+... .|.........++.+ |..++. + ||++|+++|||+++|++ ++|++|++|||.
T Consensus 80 ~~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~~~~~~~~~ik~~l~~~gPV~v~~~~~~~~f~~y~~Giy~ 155 (218)
T 3ovx_A 80 IDNKGIDSDASYPYKAMDQ---KCQYDSKYRAATCSK-YTELPYGREDVLKEAVANKGPVSVGVDARHPSFFLYRSGVYY 155 (218)
T ss_dssp HHHTCEEBTTTSCCCSSCC---CCCCCGGGEEECCCE-EEECCTTCHHHHHHHHHHTCCEEEEECCCSHHHHHCCSSEEC
T ss_pred HHhCCcCcccccCccCCCC---cccCCCccceeeecc-EEEeCCCCHHHHHHHHHhcCCEEEEEEecchhhhcccCceec
Confidence 76 5999999999999888 899877777788888 988864 2 99999999999999999 489999999999
Q ss_pred CCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCC-CcccccCceeEEee
Q psy4960 276 RNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGA-NACGIESYAYLASV 340 (341)
Q Consensus 276 ~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~-n~Cgi~~~~~~~~~ 340 (341)
. +.| ...++|||+|||||++++++|||||||||++||++|||||+|+. |+|||++++++|++
T Consensus 156 ~--~~~-~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~n~cgi~~~~~~p~~ 218 (218)
T 3ovx_A 156 E--PSC-TQNVNHGVLVVGYGDLNGKEYWLVKNSWGHNFGEEGYIRMARNKGNHCGIASFPSYPEI 218 (218)
T ss_dssp C--TTC-CSCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred C--CCC-CcccCcEEEEEEEeccCCceEEEEECCCCCccccCCEEEEecCCCCcccccCceeeeeC
Confidence 8 467 45789999999999999999999999999999999999999998 99999999999986
No 16
>8pch_A Cathepsin H; hydrolase, protease, cysteine proteinase, aminopeptidase; HET: NAG BMA; 2.10A {Sus scrofa} SCOP: d.3.1.1 PDB: 1nb3_A* 1nb5_A*
Probab=100.00 E-value=1.3e-64 Score=456.93 Aligned_cols=209 Identities=37% Similarity=0.743 Sum_probs=193.1
Q ss_pred CCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCC--CCCCCCCCcHHHHHHHHH
Q psy4960 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH--GNLNCNGGNIDVAFEYVK 203 (341)
Q Consensus 126 lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~--~~~gC~GG~~~~a~~~~~ 203 (341)
||++||||+.+ ++|+||||||.||||||||++++||++++++++..+.||+|+|+||+. .+.||+||++..|++|++
T Consensus 1 lP~~~DwR~~~-~~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dc~~~~~~~gC~GG~~~~a~~~~~ 79 (220)
T 8pch_A 1 YPPSMDWRKKG-NFVSPVKNQGSCGSCWTFSTTGALESAVAIATGKMLSLAEQQLVDCAQNFNNHGCQGGLPSQAFEYIR 79 (220)
T ss_dssp CCSCEEHHHHS-SCSCCCCBCTTSCCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHGGGGTCCGGGCCCHHHHHHHHH
T ss_pred CCCCEecCcCC-CcCCcccccCCCchHHHHHHHHHHHHHHHHHcCCCCCCCHHHHhhCcCccCCCCCCCCCHHHHHHHHH
Confidence 79999999976 369999999999999999999999999999999999999999999984 378999999999999999
Q ss_pred Hc-CCCCCCCCCCcCCCCCccccccccccceeeeccceeechH---H-HHHHHHhcCCeEEEEec-cccccCCCCcccCC
Q psy4960 204 QY-GLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV---D-HMMHLLQSGPIGVYLNH-RLIESYDGNPIRRN 277 (341)
Q Consensus 204 ~~-Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~---d-ik~~l~~~gPv~v~~~~-~~f~~y~~Gv~~~~ 277 (341)
++ |+++|++|||.+... .|...+....+++.+ |..++. + ||++|+++|||+++|++ .+|+.|++|||..
T Consensus 80 ~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~v~~~~~~~ik~~l~~~gPV~~~~~~~~~f~~Y~~Giy~~- 154 (220)
T 8pch_A 80 YNKGIMGEDTYPYKGQDD---HCKFQPDKAIAFVKD-VANITMNDEEAMVEAVALYNPVSFAFEVTNDFLMYRKGIYSS- 154 (220)
T ss_dssp HHTCEEBTTTSCCCSSCC---CCCCCGGGEEECEEE-EEECCTTCHHHHHHHHHHTCCEEEEECCCHHHHTCCSSEECC-
T ss_pred HcCCcCcccccCccCCCC---CCCCCCCcceEEeCC-EEEeCCCCHHHHHHHHHhcCCEEEEEEeccchhhcCCCcccC-
Confidence 98 999999999999887 899877777788998 888874 2 99999999999999999 7999999999987
Q ss_pred CCCCCCC--CCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCCCcccccCceeEEeeC
Q psy4960 278 DWACNPH--KLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLASVK 341 (341)
Q Consensus 278 ~~~~~~~--~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~n~Cgi~~~~~~~~~~ 341 (341)
+.|... .++|||+|||||++++.+|||||||||++||++|||||+|+.|+|||++++.+|++.
T Consensus 155 -~~~~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~n~cgi~~~~~~~~p~ 219 (220)
T 8pch_A 155 -TSCHKTPDKVNHAVLAVGYGEENGIPYWIVKNSWGPQWGMNGYFLIERGKNMCGLAACASYPIPL 219 (220)
T ss_dssp -SSCCCSTTTCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEEEEEC
T ss_pred -CcCCCCCCcCCcEEEEEEEEccCCeeEEEEECCCCcCcccCCEEEEEcCCCccccCCCceeEeec
Confidence 456543 689999999999999999999999999999999999999999999999999999863
No 17
>3f5v_A DER P 1 allergen; allergy, asthma, DUST mites, glycoprotein, hydrola protease, secreted, thiol protease; HET: P6G; 1.36A {Dermatophagoides pteronyssinus} PDB: 2as8_A 3rvw_A* 3rvx_A 3rvv_A* 3d6s_A*
Probab=100.00 E-value=1.3e-64 Score=457.36 Aligned_cols=207 Identities=29% Similarity=0.536 Sum_probs=191.4
Q ss_pred CCCCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCCCCCCCCCCcHHHHHHHHH
Q psy4960 124 GPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVK 203 (341)
Q Consensus 124 ~~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~ 203 (341)
++||++||||+++ +|+||||||.||||||||++++||++++++++..+.||+|+|+||+. +.||+||++..|++|++
T Consensus 8 ~~lP~~~DwR~~~--~vtpVkdQg~cGsCWAfa~~~~lE~~~~~~~~~~~~lS~q~l~dc~~-~~gC~GG~~~~a~~~~~ 84 (222)
T 3f5v_A 8 GNAPAEIDLRQMR--TVTPIRMQGGCGSAWAFSGVAATESAYLAYRQQSLDLAEQELVDCAS-QHGCHGDTIPRGIEYIQ 84 (222)
T ss_dssp CCCCSCEEHHHHT--CSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHTC-SSTTBCCCHHHHHHHHH
T ss_pred cCCCCCCCCccCC--CCCCCCCCCCChhHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhCcC-CCCCCCCCHHHHHHHHH
Confidence 3599999999998 99999999999999999999999999999999999999999999998 89999999999999999
Q ss_pred HcCCCCCCCCCCcCCCCCccccccccccceeeeccceeechH---H-HHHHHHh-cCCeEEEEec---cccccCCCCccc
Q psy4960 204 QYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV---D-HMMHLLQ-SGPIGVYLNH---RLIESYDGNPIR 275 (341)
Q Consensus 204 ~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~---d-ik~~l~~-~gPv~v~~~~---~~f~~y~~Gv~~ 275 (341)
++|+++|++|||.+... .|. .+....+++.+ |..++. + ||++|++ +|||+|+|.+ ++|++|++||+.
T Consensus 85 ~~Gi~~e~~yPY~~~~~---~C~-~~~~~~~~i~~-~~~v~~~~~~~ik~~l~~~~gpV~v~~~~~~~~~f~~Y~~gi~~ 159 (222)
T 3f5v_A 85 HNGVVQESYYRYVAREQ---SCR-RPNAQRFGISN-YCQIYPPNANKIREALAQTHSAIAVIIGIKDLDAFRHYDGRTII 159 (222)
T ss_dssp HHCEEBGGGSCCCSSCC---CCC-CCSSCEECCSE-EEECCSCCHHHHHHHHHHHCCCEEEEEEESCHHHHHTCCSSSCB
T ss_pred HcCCCchhhCCCcccCC---Ccc-CCcCcceeecc-EEEeCCCCHHHHHHHHHhcCCCEEEEEEeccchhhhccCCCcee
Confidence 99999999999999887 898 55566788999 988854 2 9999999 8999999987 479999999886
Q ss_pred CCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCCCcccccCceeEEee
Q psy4960 276 RNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLASV 340 (341)
Q Consensus 276 ~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~n~Cgi~~~~~~~~~ 340 (341)
. ..|....++|||+|||||+++|++|||||||||++||++|||||+|+.|.|||++++++|+|
T Consensus 160 ~--~~~~~~~~~HaV~iVGyg~~~g~~ywivkNSWG~~WGe~Gy~~i~r~~n~cgi~~~~~~p~~ 222 (222)
T 3f5v_A 160 Q--RDNGYQPNYHAVNIVGYSNAQGVDYWIVRNSWDTNWGDNGYGYFAANIDLMMIEEYPYVVIL 222 (222)
T ss_dssp C--CCCSSSCEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEEEEC
T ss_pred c--CCCCCCccCcEEEEEEEeccCCCEEEEEEcCCCCCcccCCEEEEEcCCCeecCCCceeEEeC
Confidence 6 34556679999999999999999999999999999999999999999999999999999986
No 18
>2xu3_A Cathepsin L1; hydrolase, drug design, thiol protease; HET: XU3 BTB; 0.90A {Homo sapiens} PDB: 2xu4_A* 2xu5_A* 2yj2_A* 2yj8_A* 2yj9_A* 2yjb_A* 2yjc_A* 3bc3_A* 3h89_A* 3h8b_A* 3h8c_A* 3of9_A* 3of8_A* 3hha_A* 2xu1_A* 3iv2_A* 3k24_A* 2nqd_B* 3kse_A* 2vhs_A ...
Probab=100.00 E-value=3.8e-64 Score=453.79 Aligned_cols=207 Identities=37% Similarity=0.711 Sum_probs=191.1
Q ss_pred CCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCC--CCCCCCCCcHHHHHHHHH
Q psy4960 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH--GNLNCNGGNIDVAFEYVK 203 (341)
Q Consensus 126 lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~--~~~gC~GG~~~~a~~~~~ 203 (341)
||++||||+++ +|+||||||.||||||||++++||+++++++++.+.||+|+|+||+. .+.||+||++..|++|+.
T Consensus 1 lP~~~DwR~~~--~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~g~~gC~GG~~~~a~~y~~ 78 (220)
T 2xu3_A 1 APRSVDWREKG--YVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQ 78 (220)
T ss_dssp CCSCEEGGGGT--CCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTTTCCTTBCCCHHHHHHHHH
T ss_pred CCCcEeCCCCC--CCCCCcccCcccHHHHHHhHHHHHHHHHHhcCCceecCHHHHHhhccCCCCCCCCCCCHHHHHHHHH
Confidence 79999999999 99999999999999999999999999999999999999999999985 378999999999999996
Q ss_pred -HcCCCCCCCCCCcCCCCCccccccccccceeeeccceeechH--H-HHHHHHhcCCeEEEEec--cccccCCCCcccCC
Q psy4960 204 -QYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV--D-HMMHLLQSGPIGVYLNH--RLIESYDGNPIRRN 277 (341)
Q Consensus 204 -~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~--d-ik~~l~~~gPv~v~~~~--~~f~~y~~Gv~~~~ 277 (341)
+.|+++|++|||.+... .|+..+....+++.+ |..++. + ||++|+++|||+|+|++ ++|++|++|||..
T Consensus 79 ~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~v~~~~~~ik~~l~~~GPV~v~~~~~~~~f~~Y~~Gvy~~- 153 (220)
T 2xu3_A 79 DNGGLDSEESYPYEATEE---SCKYNPKYSVANDTG-FVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFE- 153 (220)
T ss_dssp HHTCEEBTTTSCCCSSCC---CCCCCGGGEEECCSE-EEECCSCHHHHHHHHHHTCCEEEEECCCSHHHHTCCSSEECC-
T ss_pred HhCCcccccccCCcccCc---CccCCCCCcceeeee-EEEeCCCHHHHHHHHHhcCCEEEEEeecCcccccccceEEcC-
Confidence 67999999999999887 898776666788999 988874 3 99999999999999999 3899999999987
Q ss_pred CCCCCCCCCCeEEEEEEEe----ecCCeeEEEEEcCCCCCCCCCcEEEEEeCC-CcccccCceeEEee
Q psy4960 278 DWACNPHKLDHAVAIVGYG----EKNGILTWIVRNSWGDIGPDHGYFQIERGA-NACGIESYAYLASV 340 (341)
Q Consensus 278 ~~~~~~~~~~Hav~iVGyg----~~~g~~ywivkNSWG~~WG~~GY~~i~r~~-n~Cgi~~~~~~~~~ 340 (341)
+.|+...++|||+||||| ++++++|||||||||++||++|||||+|+. |+|||++++.+|++
T Consensus 154 -~~c~~~~~~HaV~iVGygd~~~~~~g~~yWivkNSWG~~WG~~Gy~~i~~~~~n~Cgi~~~~~~p~~ 220 (220)
T 2xu3_A 154 -PDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 220 (220)
T ss_dssp -TTCCSSCCCEEEEEEEEEECCCSSSCCEEEEEECSBCTTSTBTTEEEEECSSSSGGGTTTSCEEEEC
T ss_pred -CCCCCCCCCeEEEEEEcCCccccCCCCcEEEEEeCCCCCcccCcEEEEecCCCCcCCccccceeeeC
Confidence 458766799999999999 677899999999999999999999999998 89999999999985
No 19
>2b1m_A SPE31; papain-like, sugar binding protein; HET: NAG FUC PG4; 2.00A {Pachyrhizus erosus} PDB: 2b1n_A*
Probab=100.00 E-value=6e-64 Score=459.50 Aligned_cols=209 Identities=32% Similarity=0.647 Sum_probs=192.4
Q ss_pred CCCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCCCCCCCCCCcHHHHHHHHHH
Q psy4960 125 PLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVKQ 204 (341)
Q Consensus 125 ~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~ 204 (341)
+||++||||+++ +|+||||||.||||||||++++||++++|+++..+.||+|+|+||+..+.||+||++..|++|+.+
T Consensus 1 ~lP~~~DwR~~g--~vtpVkdQg~CGsCWAfa~~~~lE~~~~i~~g~~~~LS~q~lvdC~~~~~gC~GG~~~~a~~y~~~ 78 (246)
T 2b1m_A 1 DAPESWDWSKKG--VITKVKFQGQCGSGWAFSATGAIEAAHAIATGNLVSLSEQELIDCVDESEGCYNGWHYQSFEWVVK 78 (246)
T ss_dssp -CCSCEEGGGTT--CCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSBTTTBCCHHHHHHHHHH
T ss_pred CCCCcCCCCCCC--CCCCcccCCCCchHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhhcCCCCCCCCCCHHHHHHHHHH
Confidence 389999999999 999999999999999999999999999999999999999999999977889999999999999999
Q ss_pred c-CCCCCCCCCCcCCCCCccccccccccceeeeccce---eechH---H-HHHHHHh---cCCeEEEEeccccccCCCCc
Q psy4960 205 Y-GLESQADYPYRNKENITFRCTYEKEKAKVFVQDTW---VTSGV---D-HMMHLLQ---SGPIGVYLNHRLIESYDGNP 273 (341)
Q Consensus 205 ~-Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y---~~~~~---d-ik~~l~~---~gPv~v~~~~~~f~~y~~Gv 273 (341)
+ ||++|++|||.+... .|........+++.+ | ..++. + |+++|++ +|||+++|++++|++|++||
T Consensus 79 ~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-y~~~~~v~~~~~~~ik~~l~~~~~~GPV~v~i~~~~f~~Y~~Gi 154 (246)
T 2b1m_A 79 HGGIASEADYPYKARDG---KCKANEIQDKVTIDN-YGVQILSNESTESEAESSLQSFVLEQPISVSIDAKDFHFYSGGI 154 (246)
T ss_dssp TTCBCBTTTSCCCSSCC---CCCGGGCCCCBCCSE-EEEEECCTTSCHHHHHHHHHHHHHHSCEEEEECCTTGGGCCSSE
T ss_pred hCCcCccccccccCCCC---cCcCCCCCCceeEcC-cceeeecCCChHHHHHHHHHhhccCCCEEEEEEcchhhccccee
Confidence 8 999999999999887 898766566688888 8 77764 2 9999998 59999999998899999999
Q ss_pred ccCCCCCCCCCC-CCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCC----CcccccCceeEEeeC
Q psy4960 274 IRRNDWACNPHK-LDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGA----NACGIESYAYLASVK 341 (341)
Q Consensus 274 ~~~~~~~~~~~~-~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~----n~Cgi~~~~~~~~~~ 341 (341)
|.. +.|+... ++|||+|||||+++|++|||||||||++||++|||||+|+. |+|||++.+++|+++
T Consensus 155 y~~--~~c~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~n~CgI~~~~~~p~~~ 225 (246)
T 2b1m_A 155 YDG--GNCSSPYGINHFVLIVGYGSEDGVDYWIAKNSWGEDWGIDGYIRIQRNTGNLLGVCGMNYFASYPIIE 225 (246)
T ss_dssp ECC--TTCCSSCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCSSCTTCGGGTTSEEEEEECC
T ss_pred ecC--CCCCCCCcCceEEEEEEEeccCCceEEEEEeCCCCcccCCcEEEEEcCCCCCCccccccceeeEEEec
Confidence 987 4676654 89999999999989999999999999999999999999998 899999999999863
No 20
>3pbh_A Procathepsin B; thiol protease, cysteine protease, proenzyme, papain; 2.50A {Homo sapiens} SCOP: d.3.1.1 PDB: 2pbh_A 1pbh_A 1mir_A
Probab=100.00 E-value=1.6e-64 Score=478.86 Aligned_cols=252 Identities=26% Similarity=0.433 Sum_probs=200.2
Q ss_pred hhcc--ccccCCCCCHHHHHHhccccCCCchhhhhhhhhhhhhhhhcccCCCCCCCeeeccccCcc--ccccccccCCcc
Q psy4960 75 DEYY--GTSGSSDRSPQEILQRTGLRLTGKEKERLEADRERVKKFLNERKKGPLPKSLDWRQSKVK--VLNPVESQGRCG 150 (341)
Q Consensus 75 ~~~y--g~N~fsD~t~eE~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~~--~v~pV~dQg~cG 150 (341)
..+| |+| |+|++.||++.+|+.+..... ... + +. .....+||++||||+++++ .|+||||||.||
T Consensus 22 ~~~~~~~~n-f~~~~~e~~~~~lg~~~~~~~---~~~-~-----~~-~~~~~~lP~s~DwR~~~~~c~~vtpVkdQg~CG 90 (317)
T 3pbh_A 22 NTTWQAGHN-FYNVDMSYLKRLCGTFLGGPK---PPQ-R-----VM-FTEDLKLPASFDAREQWPQCPTIKEIRDQGSCG 90 (317)
T ss_dssp TCSEEECCC-CSSCCHHHHHHTCCBCTTCCC---CSE-E-----EC-CCSCCCCCSSEEHHHHCTTCGGGTCCCBCCSSC
T ss_pred CCCeEEeec-cccCCHHHHHHHcCCCCCccc---cCc-c-----cc-cccccCCCCCEechhccCCCCCcCCccccCCcc
Confidence 3577 999 999999998888776543221 100 0 00 1112459999999998432 799999999999
Q ss_pred chHHHHHHHHHHHHHHHHhCC--CCcCChhHHhhcCC--CCCCCCCCcHHHHHHHHHHcCCCCCCCC-------CCcCCC
Q psy4960 151 SCWAFATTAILESQVALLKKT--LYPLSKSQLVECDH--GNLNCNGGNIDVAFEYVKQYGLESQADY-------PYRNKE 219 (341)
Q Consensus 151 sCwAfA~~~~le~~~~~~~~~--~~~lS~q~l~dc~~--~~~gC~GG~~~~a~~~~~~~Gi~~e~~y-------PY~~~~ 219 (341)
||||||++++||++++|+++. .+.||+|+|+||+. .+.||+||++..|++|++++||++|++| ||...+
T Consensus 91 SCWAFsa~~ale~~~~i~~~~~~~~~LSeq~LvdC~~~~~~~GC~GG~~~~A~~yi~~~Gi~te~~Y~~~~~c~PY~~~~ 170 (317)
T 3pbh_A 91 SCWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEAWNFWTRKGLVSGGLYESHVGCRPYSIPP 170 (317)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTSCCCCBCHHHHHHHSCTTTBCGGGCBCHHHHHHHHHHTCEEBBCSTTCCCBSSCCCSCC
T ss_pred chHHHHHHHHHHHHHHHHhCCCCcccCCHHHHHHhccccCCCCCCCCCHHHHHHHHHHhCCCcchhccCCCCCcCcccCc
Confidence 999999999999999999874 89999999999985 4789999999999999999999999998 998421
Q ss_pred ------CCcccccc---------cccc--------ceeeeccceeechH---HHHHHHHhcCCeEEEEec-cccccCCCC
Q psy4960 220 ------NITFRCTY---------EKEK--------AKVFVQDTWVTSGV---DHMMHLLQSGPIGVYLNH-RLIESYDGN 272 (341)
Q Consensus 220 ------~~~~~C~~---------~~~~--------~~~~i~~~y~~~~~---dik~~l~~~gPv~v~~~~-~~f~~y~~G 272 (341)
+....|.. .... ....... ...++. +|+++|+++|||+|+|++ ++|++|++|
T Consensus 171 c~~~~~~~~~~C~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~-~~~v~~~e~~i~~~i~~~GPV~v~i~~~~~f~~Y~~G 249 (317)
T 3pbh_A 171 CEHHVNGSRPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYN-SYSVSNSEKDIMAEIYKNGPVEGAFSVYSDFLLYKSG 249 (317)
T ss_dssp CCCCCTTCCSCCCSCCCCCCCCCSCCSSCCSCGGGSEECBCC-CEEECSCHHHHHHHHHHHCCEEEEEEEEGGGGGEEEE
T ss_pred ccccccCcCCCCCCcCCCCcccccccCCCccceeeeeeeeee-cccCCcHHHHHHHHHHHCCCEEEEEEecccccCCCCc
Confidence 11114432 1100 0011122 234543 399999999999999999 899999999
Q ss_pred cccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCCCcccccCceeEEeeC
Q psy4960 273 PIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLASVK 341 (341)
Q Consensus 273 v~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~n~Cgi~~~~~~~~~~ 341 (341)
||.+ .|+...++|||+|||||+++|++|||||||||++||++|||||+|+.|+|||++.+++++.+
T Consensus 250 Vy~~---~~~~~~~~HaV~iVGyG~~~g~~YWivkNSWG~~WGe~GY~ri~rg~n~CgI~~~~~a~~p~ 315 (317)
T 3pbh_A 250 VYQH---VTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILRGQDHCGIESEVVAGIPR 315 (317)
T ss_dssp EECC---CSCCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSSCGGGTTTSCEECCBC
T ss_pred EEcc---CCCCCCCCEEEEEEEEEEeCCeeEEEEEcCCCCCcCCCcEEEEEcCCCcccCCCceEeeecC
Confidence 9988 46555579999999999999999999999999999999999999999999999999988753
No 21
>1ppo_A Protease omega; hydrolase(thiol protease); 1.80A {Carica papaya} SCOP: d.3.1.1 PDB: 1meg_A*
Probab=100.00 E-value=5.5e-64 Score=451.51 Aligned_cols=205 Identities=32% Similarity=0.666 Sum_probs=188.7
Q ss_pred CCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCCCCCCCCCCcHHHHHHHHHHc
Q psy4960 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVKQY 205 (341)
Q Consensus 126 lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~ 205 (341)
||++||||+++ +|+||||||.||||||||++++||++++++++..+.||+|+|+||+..+.||+||++..|++|++++
T Consensus 1 lP~~~DwR~~~--~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~yi~~~ 78 (216)
T 1ppo_A 1 LPENVDWRKKG--AVTPVRHQGSCGSCWAFSAVATVEGINKIRTGKLVELSEQELVDCERRSHGCKGGYPPYALEYVAKN 78 (216)
T ss_dssp CCSCEETTTTT--CCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCSSSCTTBCCCHHHHHHHHHHH
T ss_pred CCCcCcCCCCC--CCCCCccCCcCccHHHHHHHHHHHHHHHHccCCceecCHHHHHhccCCCCCCCCCCHHHHHHHHHHh
Confidence 69999999999 9999999999999999999999999999999999999999999999778899999999999999999
Q ss_pred CCCCCCCCCCcCCCCCccccccccc-cceeeeccceeechH---H-HHHHHHhcCCeEEEEec--cccccCCCCcccCCC
Q psy4960 206 GLESQADYPYRNKENITFRCTYEKE-KAKVFVQDTWVTSGV---D-HMMHLLQSGPIGVYLNH--RLIESYDGNPIRRND 278 (341)
Q Consensus 206 Gi~~e~~yPY~~~~~~~~~C~~~~~-~~~~~i~~~y~~~~~---d-ik~~l~~~gPv~v~~~~--~~f~~y~~Gv~~~~~ 278 (341)
||++|++|||.+... .|+.... ...+++.+ |..++. + |+++|++ |||+++|++ ++|++|++|||.+
T Consensus 79 Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~-y~~v~~~~~~~i~~~l~~-GPV~v~~~~~~~~f~~Y~~Giy~~-- 151 (216)
T 1ppo_A 79 GIHLRSKYPYKAKQG---TCRAKQVGGPIVKTSG-VGRVQPNNEGNLLNAIAK-QPVSVVVESKGRPFQLYKGGIFEG-- 151 (216)
T ss_dssp CBCBTTTSCCCSSCC---CCCGGGCCSCCBCCCE-EEECCSSCHHHHHHHHHH-SCEEEEECCCSHHHHHCCSSEECC--
T ss_pred CcCccccCCccCCCC---CcCCCCCCCceEEecc-EEEECCCCHHHHHHHHHh-CCEEEEEecCChhhhhcCCceECC--
Confidence 999999999999887 8986543 45678888 988874 2 9999986 999999999 5899999999987
Q ss_pred CCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCC----CcccccCceeEEeeC
Q psy4960 279 WACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGA----NACGIESYAYLASVK 341 (341)
Q Consensus 279 ~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~----n~Cgi~~~~~~~~~~ 341 (341)
.|+. ..+|||+|||||+++|.+|||||||||++||++|||||+|+. |.|||++++++|++.
T Consensus 152 -~~~~-~~~HaV~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~n~Cgi~~~~~~p~~~ 216 (216)
T 1ppo_A 152 -PCGT-KVDHAVTAVGYGKSGGKGYILIKNSWGTAWGEKGYIRIKRAPGNSPGVCGLYKSSYYPTKN 216 (216)
T ss_dssp -SCCS-CCCEEEEEEEEEEETTEEEEEEECSBCSSSTBTTEEEEECCCSSSSCGGGTTSCCEEEECC
T ss_pred -CCCC-CCCEEEEEEEeeccCCccEEEEEeCCCCCcccCcEEEEEcCCCCCCCcCccccceeeEeeC
Confidence 5765 479999999999999999999999999999999999999995 899999999999874
No 22
>1cqd_A Protein (protease II); cysteine protease, glycoprotein, proline specificity, carboh papain family, hydrolase; HET: NAG FUL FUC; 2.10A {Zingiber officinale} SCOP: d.3.1.1
Probab=100.00 E-value=4.8e-64 Score=453.38 Aligned_cols=206 Identities=34% Similarity=0.698 Sum_probs=189.4
Q ss_pred CCCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCCCCCCCCCCcHHHHHHHHHH
Q psy4960 125 PLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVKQ 204 (341)
Q Consensus 125 ~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~ 204 (341)
+||++||||+++ +|+||||||.||||||||++++||++++++++..+.||+|+|+||+..+.||+||++..|++|+++
T Consensus 2 ~lP~~~DwR~~~--~v~~VkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~y~~~ 79 (221)
T 1cqd_A 2 DLPDSIDWRENG--AVVPVKNQGGCGSCWAFSTVAAVEGINQIVTGDLISLSEQQLVDCTTANHGCRGGWMNPAFQFIVN 79 (221)
T ss_dssp -CCSCEETTTTT--CCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHH
T ss_pred CCCCcCcCCCCC--CcCCcccCCCCccHHHHHHHHHHHHHHHHhcCCeeeeccceeEECCCCCCCCCCCCHHHHHHHHHH
Confidence 489999999999 999999999999999999999999999999999999999999999977889999999999999998
Q ss_pred c-CCCCCCCCCCcCCCCCccccccccccceeeeccceeechH---H-HHHHHHhcCCeEEEEec--cccccCCCCcccCC
Q psy4960 205 Y-GLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV---D-HMMHLLQSGPIGVYLNH--RLIESYDGNPIRRN 277 (341)
Q Consensus 205 ~-Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~---d-ik~~l~~~gPv~v~~~~--~~f~~y~~Gv~~~~ 277 (341)
+ ||++|++|||.+... .|........+++.+ |..++. + |+++|++ |||+|+|++ ++|+.|++|||.+
T Consensus 80 ~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~- 153 (221)
T 1cqd_A 80 NGGINSEETYPYRGQDG---ICNSTVNAPVVSIDS-YENVPSHNEQSLQKAVAN-QPVSVTMDAAGRDFQLYRSGIFTG- 153 (221)
T ss_dssp HTSBCBTTTSCCCSSCC---CCCSSSCCCSBCCSE-EEECCSSCHHHHHHHHTT-SCEEEEECCCSHHHHTCCSSEECC-
T ss_pred hCCccccccCCccCCCC---CcCCCCCCceEEecc-EEEeCCchHHHHHHHHHh-CCEEEEEeccCcccccccCccccC-
Confidence 7 999999999999887 898766566788888 988874 2 9999874 999999999 4899999999987
Q ss_pred CCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCC----CcccccCceeEEeeC
Q psy4960 278 DWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGA----NACGIESYAYLASVK 341 (341)
Q Consensus 278 ~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~----n~Cgi~~~~~~~~~~ 341 (341)
.|+. .++|||+|||||+++|++|||||||||++||++|||||+|+. |.|||++++++|+++
T Consensus 154 --~~~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~~ 218 (221)
T 1cqd_A 154 --SCNI-SANHALTVVGYGTENDKDFWIVKNSWGKNWGESGYIRAERNIENPDGKCGITRFASYPVKK 218 (221)
T ss_dssp --CCCC-CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEECC
T ss_pred --CCCC-cCCeEEEEEEEcccCCCcEEEEEeCCCCCcccCCEEEEEcCCCCCCcccceeeeeeEEEec
Confidence 5765 589999999999999999999999999999999999999984 889999999999874
No 23
>1iwd_A Ervatamin B; cysteine protease, alpha-beta protein, catalytic DYAD, L-DOM domain., hydrolase; 1.63A {Tabernaemontana divaricata} SCOP: d.3.1.1
Probab=100.00 E-value=8.2e-64 Score=450.02 Aligned_cols=204 Identities=32% Similarity=0.658 Sum_probs=188.1
Q ss_pred CCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCCCCCCCCCCcHHHHHHHHHHc
Q psy4960 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVKQY 205 (341)
Q Consensus 126 lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~ 205 (341)
||++||||+++ +|+||||||.||||||||++++||++++|+++..+.||+|+|+||+..+.||+||++..|++|++++
T Consensus 1 lP~~~DwR~~~--~v~~VkdQg~cGsCWAfa~~~~~e~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~ 78 (215)
T 1iwd_A 1 LPSFVDWRSKG--AVNSIKNQKQCGSCWAFSAVAAVESINKIRTGQLISLSEQELVDCDTASHGCNGGWMNNAFQYIITN 78 (215)
T ss_dssp CCSCEEGGGGT--CSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHH
T ss_pred CCCcEeCCCCC--CCCCcccCCCCchHHHHHHHHHHHHHHHHhcCCccccChhHeEECcCCCCCCCCCCHHHHHHHHHHh
Confidence 79999999999 9999999999999999999999999999999999999999999999768899999999999999997
Q ss_pred -CCCCCCCCCCcCCCCCccccccccccceeeeccceeechH---H-HHHHHHhcCCeEEEEec-c-ccccCCCCcccCCC
Q psy4960 206 -GLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV---D-HMMHLLQSGPIGVYLNH-R-LIESYDGNPIRRND 278 (341)
Q Consensus 206 -Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~---d-ik~~l~~~gPv~v~~~~-~-~f~~y~~Gv~~~~~ 278 (341)
|+++|++|||.+... .|.... ...+++.+ |..++. + |+++|++ |||+|+|++ . +|+.|++|||.+
T Consensus 79 ~Gi~~e~~yPY~~~~~---~C~~~~-~~~~~i~~-~~~v~~~~~~~ik~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~-- 150 (215)
T 1iwd_A 79 GGIDTQQNYPYSAVQG---SCKPYR-LRVVSING-FQRVTRNNESALQSAVAS-QPVSVTVEAAGAPFQHYSSGIFTG-- 150 (215)
T ss_dssp TCBCBTTTSCCCSSCC---CCCTTC-CCCBCCCE-EEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC--
T ss_pred CCcccccccCccCCCC---CCCCCC-CceEEeCc-EEEeCCCcHHHHHHHHHh-CCEEEEEecCCcchhhcCCceECC--
Confidence 999999999998887 898654 35678888 888864 2 9999885 999999999 5 799999999987
Q ss_pred CCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCC----CcccccCceeEEeeC
Q psy4960 279 WACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGA----NACGIESYAYLASVK 341 (341)
Q Consensus 279 ~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~----n~Cgi~~~~~~~~~~ 341 (341)
.|+. .++|||+|||||++++++|||||||||++||++|||||+|+. |+|||++++++|++.
T Consensus 151 -~c~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~~ 215 (215)
T 1iwd_A 151 -PCGT-AQNHGVVIVGYGTQSGKNYWIVRNSWGQNWGNQGYIWMERNVASSAGLCGIAQLPSYPTKA 215 (215)
T ss_dssp -CCCC-CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEECC
T ss_pred -CCCC-cCCEEEEEEEEeccCCccEEEEEeCCCCCcCCCcEEEEEcCCCCCCCCCCccccceeeeeC
Confidence 5764 689999999999999999999999999999999999999997 899999999999874
No 24
>1yal_A Chymopapain; hydrolase, thiol protease; 1.70A {Carica papaya} SCOP: d.3.1.1 PDB: 1gec_E*
Probab=100.00 E-value=9.8e-64 Score=450.47 Aligned_cols=205 Identities=32% Similarity=0.682 Sum_probs=188.3
Q ss_pred CCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCCCCCCCCCCcHHHHHHHHHHc
Q psy4960 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVKQY 205 (341)
Q Consensus 126 lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~ 205 (341)
||++||||+++ +|+||||||.||||||||++++||++++++++..+.||+|+|+||+..+.||+||++..|++|++++
T Consensus 1 lP~~~DwR~~~--~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~ 78 (218)
T 1yal_A 1 YPQSIDWRAKG--AVTPVKNQGACGSCWAFSTIATVEGINKIVTGNLLELSEQELVDCDKHSYGCKGGYQTTSLQYVANN 78 (218)
T ss_dssp CCSCEETTTTT--CCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHH
T ss_pred CCCcCcCCCCC--CCCCCccCccchhHHHHHHHHHHHHHHHHhcCCccccCHHHHHHhcCCCCCCCCCCHHHHHHHHHHc
Confidence 69999999999 9999999999999999999999999999999999999999999999778999999999999999999
Q ss_pred CCCCCCCCCCcCCCCCccccccccc-cceeeeccceeechH---H-HHHHHHhcCCeEEEEec--cccccCCCCcccCCC
Q psy4960 206 GLESQADYPYRNKENITFRCTYEKE-KAKVFVQDTWVTSGV---D-HMMHLLQSGPIGVYLNH--RLIESYDGNPIRRND 278 (341)
Q Consensus 206 Gi~~e~~yPY~~~~~~~~~C~~~~~-~~~~~i~~~y~~~~~---d-ik~~l~~~gPv~v~~~~--~~f~~y~~Gv~~~~~ 278 (341)
||++|++|||.+... .|+.... ...+++.+ |..++. + |+++|++ |||+++|++ ++|++|++|||.+
T Consensus 79 Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~-y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~~-- 151 (218)
T 1yal_A 79 GVHTSKVYPYQAKQY---KCRATDKPGPKVKITG-YKRVPSNCETSFLGALAN-QPLSVLVEAGGKPFQLYKSGVFDG-- 151 (218)
T ss_dssp CBCBTTTSCCCSSCC---CCCGGGCCSCCBCCSE-EEECCSSBHHHHHHHHTT-SCEEEEECCCSHHHHTCCSSEECC--
T ss_pred CCCccccccccCCCC---CcccCcCCCceEEEee-EEEeCCCCHHHHHHHHHh-CCEEEEEeccchhccccCCceECC--
Confidence 999999999999887 8987543 45678888 988874 2 9999985 999999999 5899999999987
Q ss_pred CCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCC----CcccccCceeEEeeC
Q psy4960 279 WACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGA----NACGIESYAYLASVK 341 (341)
Q Consensus 279 ~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~----n~Cgi~~~~~~~~~~ 341 (341)
.|+. .++|||+|||||+++|++|||||||||++||++|||||+|+. |.|||++++++|++.
T Consensus 152 -~~~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~~ 216 (218)
T 1yal_A 152 -PCGT-KLDHAVTAVGYGTSDGKNYIIIKNSWGPNWGEKGYMRLKRQSGNSQGTCGVYKSSYYPFKG 216 (218)
T ss_dssp -SCCS-CCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCSBSCCGGGTTSSCEEEECC
T ss_pred -CCCC-CCCEEEEEEEeeccCCccEEEEEeCCCCCcccCcEEEEECCCCCCCCccccccceeeEEEe
Confidence 5765 479999999999999999999999999999999999999995 899999999999864
No 25
>3p5u_A Actinidin; SAD, cysteine proteinases, hydrolase; 1.50A {Actinidia arguta} SCOP: d.3.1.1 PDB: 3p5v_A 3p5w_A 3p5x_A 1aec_A* 2act_A
Probab=100.00 E-value=1.4e-63 Score=450.15 Aligned_cols=205 Identities=32% Similarity=0.660 Sum_probs=187.2
Q ss_pred CCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCCC--CCCCCCCcHHHHHHHHH
Q psy4960 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHG--NLNCNGGNIDVAFEYVK 203 (341)
Q Consensus 126 lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~--~~gC~GG~~~~a~~~~~ 203 (341)
||++||||+++ +|+||||||.||||||||++++||+++++++++.+.||+|+|+||+.. +.||+||++..|++|+.
T Consensus 1 lP~~~DwR~~~--~vtpVkdQg~cGsCWAfa~~~~lE~~~~i~~~~~~~LS~q~l~dC~~~~~~~gC~GG~~~~a~~~~~ 78 (220)
T 3p5u_A 1 LPDYVDWRSSG--AVVDIKDQGQCGSAWAFSTIAAVEGINKIATGDLISLSEQELVDCGRTQNTRGCDGGFMTDGFQFII 78 (220)
T ss_dssp CCSCEETTTTT--CSCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCCSSCCTTBCCCHHHHHHHHH
T ss_pred CCCCCcCCcCC--CCCCCCcCCCChhHHHHHHHHHHHHHHHHHcCCCCCcCHhHcEECCCCCCCCCCCCCCHHHHHHHHH
Confidence 79999999999 999999999999999999999999999999999999999999999965 78999999999999999
Q ss_pred Hc-CCCCCCCCCCcCCCCCcccccccccc-ceeeeccceeechH---H-HHHHHHhcCCeEEEEec--cccccCCCCccc
Q psy4960 204 QY-GLESQADYPYRNKENITFRCTYEKEK-AKVFVQDTWVTSGV---D-HMMHLLQSGPIGVYLNH--RLIESYDGNPIR 275 (341)
Q Consensus 204 ~~-Gi~~e~~yPY~~~~~~~~~C~~~~~~-~~~~i~~~y~~~~~---d-ik~~l~~~gPv~v~~~~--~~f~~y~~Gv~~ 275 (341)
++ ||++|++|||.+... .|...... ..+++.+ |..++. + |+++| .+|||+++|++ ++|+.|++|||.
T Consensus 79 ~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~-~~~v~~~~~~~l~~~l-~~GPV~v~~~~~~~~f~~Y~~Giy~ 153 (220)
T 3p5u_A 79 NNGGINTEANYPYTAEEG---QCNLDLQQEKYVSIDT-YENVPYNNEWALQTAV-AYQPVSVALEAAGYNFQHYSSGIFT 153 (220)
T ss_dssp HHTCBCBTTTSCCCSSCC---CCCHHHHTCCSBCCCE-EEECCTTCHHHHHHHH-TTSCEEEEECCCSHHHHTCCSSEEC
T ss_pred HhCCcCcccccccccCCC---CcCcCCCCCceEEEcc-EEEeCCCcHHHHHHHH-hcCCEEEEEecCchhhccccCceEC
Confidence 88 999999999999888 89865433 3478888 988865 2 88888 68999999999 589999999998
Q ss_pred CCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCCC---cccccCceeEEeeC
Q psy4960 276 RNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGAN---ACGIESYAYLASVK 341 (341)
Q Consensus 276 ~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~n---~Cgi~~~~~~~~~~ 341 (341)
+ .|+. ..+|||+|||||++++++|||||||||++||++|||||+|+.| +|||++.+++|++.
T Consensus 154 ~---~~~~-~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~Cgi~~~~~~p~~~ 218 (220)
T 3p5u_A 154 G---PCGT-AVDHAVTIVGYGTEGGIDYWIVKNSWGTTWGEEGYMRIQRNVGGVGQCGIAKKASYPVKY 218 (220)
T ss_dssp C---CCCC-SCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECCCCTTCGGGTTSSCEEEECS
T ss_pred C---CCCC-ccceEEEEEEEecCCCceEEEEECCCCCCcccCCEEEEECCCCCCCccCcccccceEEEe
Confidence 7 6755 4799999999999999999999999999999999999999986 89999999999863
No 26
>3u8e_A Papain-like cysteine protease; papain-like cysteine peptidase, peptidase_C1A, hydrolase, in form; 1.31A {Crocus sativus} SCOP: d.3.1.0
Probab=100.00 E-value=1.9e-63 Score=449.75 Aligned_cols=205 Identities=31% Similarity=0.634 Sum_probs=183.3
Q ss_pred CCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCCCCCCCCCCcHHHHHHHHHHc
Q psy4960 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVKQY 205 (341)
Q Consensus 126 lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~ 205 (341)
||++||||+++ +|+||||||.||||||||++++||++++++++..+.||+|+|+||+..+.||+||++..|++|++++
T Consensus 1 lP~~~DwR~~~--~vtpVkdQg~cGSCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~ 78 (222)
T 3u8e_A 1 APASIDWRKKG--AVTSVKDQGACGMCWAFGATGAIEGIDAITTGRLISVSEQQIVDCDTXXXXXXGGDADDAFRWVITN 78 (222)
T ss_dssp CCSCEEGGGGT--CCCCCCBCCSCSSCTTTTHHHHHHHHHHHHHSCCCCBCHHHHHHHCC------CCCHHHHHHHHHHH
T ss_pred CCCcCcCCcCC--CCCCcccCCCCccHHHHHHHHHHHHHHHHHcCCCcccCHHHHHhccCcccccCCCCHHHHHHHHHHc
Confidence 79999999999 9999999999999999999999999999999999999999999999878999999999999999999
Q ss_pred -CCCCCCCCCCcCCCCCccccccccccceeeeccceeechH--H-HHHHHHhcCCeEEEEec-c-ccccCCC-CcccCCC
Q psy4960 206 -GLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV--D-HMMHLLQSGPIGVYLNH-R-LIESYDG-NPIRRND 278 (341)
Q Consensus 206 -Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~--d-ik~~l~~~gPv~v~~~~-~-~f~~y~~-Gv~~~~~ 278 (341)
||++|++|||.+... .|...... .+++.+ |..++. + |+++|. +|||+|+|++ . +|++|++ |||..
T Consensus 79 ~Gi~~e~~yPY~~~~~---~C~~~~~~-~~~i~~-~~~v~~~~~~i~~~l~-~GPV~v~i~~~~~~f~~Y~~~Giy~~-- 150 (222)
T 3u8e_A 79 GGIASDANYPYTGVDG---TCDLNKPI-AARIDG-YTNVPNSSSALLDAVA-KQPVSVNIYTSSTSFQLYTGPGIFAG-- 150 (222)
T ss_dssp TCBCBTTTSCCCSSCC---CCCCCSCC-CBCCCE-EEECCSCHHHHHHHHH-HSCEEEEECCCSHHHHTCCCSSCBCC--
T ss_pred CCccchhcCCCcccCC---ccccCCCC-eEEEcc-EEEeCCcHHHHHHHHh-CCCEEEEEEecChhhhcEeCCceECC--
Confidence 999999999999887 89875544 688888 988864 3 999995 7999999999 4 8999999 99987
Q ss_pred CCCCC--CCCCeEEEEEEEeecC-CeeEEEEEcCCCCCCCCCcEEEEEeCCC----cccccCceeEEee
Q psy4960 279 WACNP--HKLDHAVAIVGYGEKN-GILTWIVRNSWGDIGPDHGYFQIERGAN----ACGIESYAYLASV 340 (341)
Q Consensus 279 ~~~~~--~~~~Hav~iVGyg~~~-g~~ywivkNSWG~~WG~~GY~~i~r~~n----~Cgi~~~~~~~~~ 340 (341)
+.|.. ..++|||+|||||+++ +++|||||||||++||++|||||+|+.| +|||+++++||++
T Consensus 151 ~~~~~~~~~~~HaV~iVGyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~g~Cgi~~~~~~p~~ 219 (222)
T 3u8e_A 151 SSCSDDPATVDHTVLIVGYGSNGTNADYWIVKNSWGTEWGIDGYILIRRNTNRPDGVCAIDAWGSYPTK 219 (222)
T ss_dssp TTCCCCGGGCCEEEEEEEEEESSTTCEEEEEECSBCTTSTBTTEEEEECSCSCTTCGGGTTSSCEEEEC
T ss_pred CcccCCCCcCCEEEEEEEEeecCCCCcEEEEECCCCCCcccCCEEEEEcCCCCCCCcCCccccceEEEE
Confidence 45754 3589999999999887 9999999999999999999999999997 9999999999986
No 27
>2oul_A Falcipain 2; cysteine protease, inhibitor, macromolecular interaction, HY hydrolase inhibitor complex; 2.20A {Plasmodium falciparum} SCOP: d.3.1.1 PDB: 2ghu_A 1yvb_A 3bpf_A* 3pnr_A
Probab=100.00 E-value=4.8e-63 Score=452.41 Aligned_cols=205 Identities=32% Similarity=0.642 Sum_probs=189.0
Q ss_pred CCCCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCCCCCCCCCCcHHHHHHHHH
Q psy4960 124 GPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVK 203 (341)
Q Consensus 124 ~~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~ 203 (341)
.+||++||||+.+ +|+||||||.||||||||++++||++++++++..+.||+|+|++|+..+.||+||++..|++|+.
T Consensus 16 ~~lP~~~DwR~~~--~vtpVkdQg~CGsCWAFaa~~alE~~~~i~~~~~~~lSeq~l~dC~~~~~gC~GG~~~~a~~yi~ 93 (241)
T 2oul_A 16 NFDHAAYDWRLHS--GVTPVKDQKNCGSCWAFSSIGSVESQYAIRKNKLITLSEQELVDCSFKNYGCNGGLINNAFEDMI 93 (241)
T ss_dssp CCCSSCEEGGGTT--CCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHCCCCCBCHHHHHHHCTTSCTTBCBCHHHHHHHHH
T ss_pred ccCCCccccCcCC--CCCCCccCccchHHHHHHHHHHHHHHHHHhcCCCcccCHHHHHhhcCCCCCCCCCCHHHHHHHHH
Confidence 4599999999999 99999999999999999999999999999999999999999999997788999999999999999
Q ss_pred H-cCCCCCCCCCCcCCCCCccc-cccccccceeeeccceeechH-H---HHHHHHhcCCeEEEEec-cccccCCCCcccC
Q psy4960 204 Q-YGLESQADYPYRNKENITFR-CTYEKEKAKVFVQDTWVTSGV-D---HMMHLLQSGPIGVYLNH-RLIESYDGNPIRR 276 (341)
Q Consensus 204 ~-~Gi~~e~~yPY~~~~~~~~~-C~~~~~~~~~~i~~~y~~~~~-d---ik~~l~~~gPv~v~~~~-~~f~~y~~Gv~~~ 276 (341)
+ .|+++|++|||.+... . |+.......+++.+ |..++. | ||++| |||+|+|++ ++|+.|++|||.+
T Consensus 94 ~~~Gi~~e~~yPY~~~~~---~~C~~~~~~~~~~i~~-~~~v~~~~~~~ik~~l---GPV~v~i~~~~~f~~Y~~Giy~~ 166 (241)
T 2oul_A 94 ELGGICPDGDYPYVSDAP---NLCNIDRCTEKYGIKN-YLSVPDNKLKEALRFL---GPISISVAVSDDFAFYKEGIFDG 166 (241)
T ss_dssp HTTSBCBTTSSCCCTTSC---CCCCTTSSSCCBCCSE-EEECCTTCHHHHHHHT---CCEEEEECBCHHHHTCCSSBCCS
T ss_pred HhCCcCccccCCCcCCCC---CcCCCCCCccceeeee-EEEeCCCCHHHHHHhh---CCEEEEEecCcchhhcCCcEEcC
Confidence 8 5999999999998877 6 98766666788999 988875 2 99999 999999999 7999999999987
Q ss_pred CCCCCCCCCCCeEEEEEEEeecC----------CeeEEEEEcCCCCCCCCCcEEEEEeCCCc----ccccCceeEEeeC
Q psy4960 277 NDWACNPHKLDHAVAIVGYGEKN----------GILTWIVRNSWGDIGPDHGYFQIERGANA----CGIESYAYLASVK 341 (341)
Q Consensus 277 ~~~~~~~~~~~Hav~iVGyg~~~----------g~~ywivkNSWG~~WG~~GY~~i~r~~n~----Cgi~~~~~~~~~~ 341 (341)
.|+.. ++|||+|||||+++ +.+|||||||||++||++|||||+|+.|. |||++.+++|+++
T Consensus 167 ---~c~~~-~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~~~~~ 241 (241)
T 2oul_A 167 ---ECGDQ-LNHAVMLVGFGMKEIVNPLTKKGEKHYYYIIKNSWGQQWGERGFINIETDESGLMRKCGLGTDAFIPLIE 241 (241)
T ss_dssp ---CBCSS-CCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBCTTSTBTTEEEEEECSSSCCCGGGTTSSEEEEECC
T ss_pred ---cCCCC-CCEEEEEEEeccccccccccccCCCCCEEEEEeCCCCCcccCCEEEEEcCCCCCCCcCCccceEEEEeeC
Confidence 67665 89999999999875 88999999999999999999999999876 9999999999974
No 28
>2cio_A Papain; hydrolase/inhibitor, complex hydrolase/inhibitor, ICP, cysteine protease, allergen, protease, thiol protease; 1.5A {Carica papaya} PDB: 1khq_A 1khp_A 1ppn_A 3e1z_B 3ima_A 3lfy_A 9pap_A 1bqi_A* 1bp4_A* 1pad_A 1pe6_A* 1pip_A* 1pop_A* 1ppd_A 1ppp_A* 1stf_E* 2pad_A 4pad_A* 5pad_A* 6pad_A* ...
Probab=100.00 E-value=7.2e-63 Score=442.99 Aligned_cols=200 Identities=31% Similarity=0.645 Sum_probs=184.2
Q ss_pred CCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCCCCCCCCCCcHHHHHHHHHHc
Q psy4960 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVKQY 205 (341)
Q Consensus 126 lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~ 205 (341)
||++||||+++ +|+||||||.||||||||++++||++++++++..+.||+|+|+||+..+.||+||++..|++|++++
T Consensus 1 lP~~~DwR~~~--~v~pVkdQg~CGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~yi~~~ 78 (212)
T 2cio_A 1 IPEYVDWRQKG--AVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNQYSEQELLDCDRRSYGCNGGYPWSALQLVAQY 78 (212)
T ss_dssp CCSCEETTTTT--CCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHT
T ss_pred CCCcccCCCCC--CCCCCccCCccchHHHHHHHHHHHHHHHHhcCCccccCHHHHHHhCCCCCCCCCCCHHHHHHHHHHh
Confidence 69999999999 9999999999999999999999999999999999999999999999778899999999999999999
Q ss_pred CCCCCCCCCCcCCCCCcccccccc-ccceeeeccceeechH---H-HHHHHHhcCCeEEEEec-c-ccccCCCCcccCCC
Q psy4960 206 GLESQADYPYRNKENITFRCTYEK-EKAKVFVQDTWVTSGV---D-HMMHLLQSGPIGVYLNH-R-LIESYDGNPIRRND 278 (341)
Q Consensus 206 Gi~~e~~yPY~~~~~~~~~C~~~~-~~~~~~i~~~y~~~~~---d-ik~~l~~~gPv~v~~~~-~-~f~~y~~Gv~~~~~ 278 (341)
|+++|++|||.+... .|.... ....+++.+ |..++. + |+++|++ |||+++|++ . +|++|++|||.+
T Consensus 79 Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~-~~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~-- 151 (212)
T 2cio_A 79 GIHYRNTYPYEGVQR---YCRSREKGPYAAKTDG-VRQVQPYNEGALLYSIAN-QPVSVVLEAAGKDFQLYRGGIFVG-- 151 (212)
T ss_dssp CBCBTTTSCCCSSCC---CCCTTTTCSCSBCCSE-EEECCSSCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC--
T ss_pred CcCcccccCCcCCCC---CcCCCCCCCceEEEee-EEEeCCccHHHHHHHHHh-CCEEEEEeccCcchhhcCCceecC--
Confidence 999999999998877 898754 345678888 988874 2 8999985 999999999 4 899999999987
Q ss_pred CCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCC----CcccccCceeEEee
Q psy4960 279 WACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGA----NACGIESYAYLASV 340 (341)
Q Consensus 279 ~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~----n~Cgi~~~~~~~~~ 340 (341)
.|+. .++|||+|||||+ +|||||||||++||++|||||+|+. |+|||++++++|++
T Consensus 152 -~~~~-~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~ 211 (212)
T 2cio_A 152 -PCGN-KVDHAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 211 (212)
T ss_dssp -CCCS-CCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEECSSSCTTCGGGTTSCCEEEEC
T ss_pred -CCCC-CCCEEEEEEEecC----CeEEEEeCCCCCcccCcEEEEEcCCCCCCCccCcccceeEEEe
Confidence 5765 5799999999996 8999999999999999999999997 89999999999986
No 29
>3bwk_A Cysteine protease falcipain-3; malaria, hydrolase; HET: C1P; 2.42A {Plasmodium falciparum} PDB: 3bpm_A*
Probab=100.00 E-value=6.3e-63 Score=452.16 Aligned_cols=206 Identities=33% Similarity=0.624 Sum_probs=189.0
Q ss_pred CCCCCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCCCCCCCCCCcHHHHHHHH
Q psy4960 123 KGPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYV 202 (341)
Q Consensus 123 ~~~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~ 202 (341)
..+||++||||+.+ +|+||||||.||||||||++++||++++++++..+.||+|+|+||+..+.||+||++..|++|+
T Consensus 17 ~~~lP~~~DwR~~~--~vtpVkdQg~cGsCWAfa~~~alE~~~~i~~~~~~~lSeq~lvdC~~~~~gC~GG~~~~a~~y~ 94 (243)
T 3bwk_A 17 AKLDRIAYDWRLHG--GVTPVKDQALCGSCWAFSSVGSVESQYAIRKKALFLFSEQELVDCSVKNNGCYGGYITNAFDDM 94 (243)
T ss_dssp CCCCCSCEEGGGTT--CCCCCCBCCSSCCHHHHHHHHHHHHHHHHHHCSCCCBCHHHHHHHCTTSCGGGCCCHHHHHHHH
T ss_pred cccCCCceecCcCC--CCCCCccCCCCchHHHHHHHHHHHHHHHHhcCCCcccCHHHHHHhcCCCCCCCCCCHHHHHHHH
Confidence 34599999999999 9999999999999999999999999999999999999999999999778899999999999999
Q ss_pred HH-cCCCCCCCCCCcCCCCCccc-cccccccceeeeccceeechH-H---HHHHHHhcCCeEEEEec-cccccCCCCccc
Q psy4960 203 KQ-YGLESQADYPYRNKENITFR-CTYEKEKAKVFVQDTWVTSGV-D---HMMHLLQSGPIGVYLNH-RLIESYDGNPIR 275 (341)
Q Consensus 203 ~~-~Gi~~e~~yPY~~~~~~~~~-C~~~~~~~~~~i~~~y~~~~~-d---ik~~l~~~gPv~v~~~~-~~f~~y~~Gv~~ 275 (341)
.+ .|+++|++|||.+... . |+.......+++.+ |..++. | ||++| |||+|+|++ ++|+.|++|||.
T Consensus 95 ~~~~Gi~~e~~yPY~~~~~---~~C~~~~~~~~~~i~~-~~~v~~~~~~~ik~~l---GPV~v~i~~~~~f~~Y~~Giy~ 167 (243)
T 3bwk_A 95 IDLGGLCSQDDYPYVSNLP---ETCNLKRCNERYTIKS-YVSIPDDKFKEALRYL---GPISISIAASDDFAFYRGGFYD 167 (243)
T ss_dssp HHTTSBCBTTTSCCCTTSC---CCCCGGGCSSCBCCCE-EEECCTTCHHHHHHHT---CCEEEEECCCHHHHTCCSSSCC
T ss_pred HHhCCcccccccCCcCCCC---CcCCCCCCccceeeee-EEEeCCCCHHHHHHhh---CCEEEEEecChhHHhcCCceec
Confidence 98 5999999999998876 6 98766666788999 988875 2 99999 999999999 799999999998
Q ss_pred CCCCCCCCCCCCeEEEEEEEeecC----------CeeEEEEEcCCCCCCCCCcEEEEEeCCCc----ccccCceeEEeeC
Q psy4960 276 RNDWACNPHKLDHAVAIVGYGEKN----------GILTWIVRNSWGDIGPDHGYFQIERGANA----CGIESYAYLASVK 341 (341)
Q Consensus 276 ~~~~~~~~~~~~Hav~iVGyg~~~----------g~~ywivkNSWG~~WG~~GY~~i~r~~n~----Cgi~~~~~~~~~~ 341 (341)
+ .|+.. ++|||+|||||+++ +.+|||||||||++||++|||||+|+.|. |||++++++|+++
T Consensus 168 ~---~c~~~-~~HaV~iVGyg~~~~~~~~~~~~~g~~yWivkNSWG~~WGe~Gy~~i~~~~~~~~g~Cgi~~~~~~~~~~ 243 (243)
T 3bwk_A 168 G---ECGAA-PNHAVILVGYGMKDIYNEDTGRMEKFYYYIIKNSWGSDWGEGGYINLETDENGYKKTCSIGTEAYVPLLE 243 (243)
T ss_dssp C---CCCSS-CCEEEEEEEEEEEEEECTTTCSEEEEEEEEEECSBCTTSTBTTEEEEEECSSSCCCSTTTTSSEEEEEC-
T ss_pred C---CCCCc-CCeEEEEEEecCccccccccccCCCCCEEEEEeCCCCCcCCCcEEEEEcCCCCCCCcCCccceEEEEecC
Confidence 7 67665 89999999999875 88999999999999999999999999876 9999999999974
No 30
>1s4v_A Cysteine endopeptidase; KDEL ER retention signal, endosperm, ricinosomes, SEED germi senescence, hydrolase-hydrolase inhibitor complex; 2.00A {Ricinus communis} SCOP: d.3.1.1
Probab=100.00 E-value=1.2e-62 Score=446.50 Aligned_cols=206 Identities=36% Similarity=0.715 Sum_probs=187.2
Q ss_pred CCCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCC-CCCCCCCCcHHHHHHHHH
Q psy4960 125 PLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH-GNLNCNGGNIDVAFEYVK 203 (341)
Q Consensus 125 ~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~-~~~gC~GG~~~~a~~~~~ 203 (341)
+||++||||+++ +|+||||||.||||||||++++||++++++++..+.||+|+|+||+. .+.||+||++..|++|+.
T Consensus 1 ~lP~~~DwR~~~--~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~~gC~GG~~~~a~~y~~ 78 (229)
T 1s4v_A 1 TVPASVDWRKKG--AVTSVKDQGQCGSCWAFSTIVAVEGINQIKTNKLVSLSEQELVDCDTDQNQGCNGGLMDYAFEFIK 78 (229)
T ss_dssp CCCSCEETTTTT--CCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCSSCCTTBCBCHHHHHHHHH
T ss_pred CCCCCEeCCCCC--CCCCCccCccchHHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhhCCCCCCCCCCCCHHHHHHHHH
Confidence 389999999999 99999999999999999999999999999999999999999999986 578999999999999999
Q ss_pred Hc-CCCCCCCCCCcCCCCCcccccccc-ccceeeeccceeechH---H-HHHHHHhcCCeEEEEec--cccccCCCCccc
Q psy4960 204 QY-GLESQADYPYRNKENITFRCTYEK-EKAKVFVQDTWVTSGV---D-HMMHLLQSGPIGVYLNH--RLIESYDGNPIR 275 (341)
Q Consensus 204 ~~-Gi~~e~~yPY~~~~~~~~~C~~~~-~~~~~~i~~~y~~~~~---d-ik~~l~~~gPv~v~~~~--~~f~~y~~Gv~~ 275 (341)
++ |+++|++|||.+... .|.... ....+++.+ |..++. + |+++|++ |||+|+|++ ++|++|++|||.
T Consensus 79 ~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~-y~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Giy~ 153 (229)
T 1s4v_A 79 QRGGITTEANYPYEAYDG---TCDVSKENAPAVSIDG-HENVPENDENALLKAVAN-QPVSVAIDAGGSDFQFYSEGVFT 153 (229)
T ss_dssp HHTCBCBTTTSCCCSSCC---CCCHHHHTCCCBCCCE-EEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEEC
T ss_pred HhCCccccccCCccCCCC---CCCCCCCCCcEEEeee-EEEeCCccHHHHHHHHhc-CCEEEEEEeCcHHHhhCCCcEEC
Confidence 98 999999999999887 898653 334678888 988874 2 8888885 999999999 589999999998
Q ss_pred CCCCCCCCCCCCeEEEEEEEeecC-CeeEEEEEcCCCCCCCCCcEEEEEeCC----CcccccCceeEEeeC
Q psy4960 276 RNDWACNPHKLDHAVAIVGYGEKN-GILTWIVRNSWGDIGPDHGYFQIERGA----NACGIESYAYLASVK 341 (341)
Q Consensus 276 ~~~~~~~~~~~~Hav~iVGyg~~~-g~~ywivkNSWG~~WG~~GY~~i~r~~----n~Cgi~~~~~~~~~~ 341 (341)
+ .|+. .++|||+|||||+++ |++|||||||||++||++|||||+|+. |.|||++++.+|+++
T Consensus 154 ~---~c~~-~~~HaV~iVGyg~~~~g~~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~~ 220 (229)
T 1s4v_A 154 G---SCGT-ELDHGVAIVGYGTTIDGTKYWTVKNSWGPEWGEKGYIRMERGISDKEGLCGIAMEASYPIKK 220 (229)
T ss_dssp C---CCCC-CCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEECSCSSTTCGGGTTSSCEEEECC
T ss_pred C---CCCC-CCCeEEEEEEeccccCCCCEEEEEeCCCCCccCCcEEEEEcCCCCCCCcCcccccceeeEec
Confidence 7 5765 479999999999876 999999999999999999999999995 899999999999863
No 31
>1o0e_A Ervatamin C; plant cysteine protease, two domain, stable at PH 2-12, HYDR; 1.90A {Tabernaemontana divaricata} SCOP: d.3.1.1 PDB: 2pns_A* 2pre_A* 3bcn_A*
Probab=100.00 E-value=1.4e-62 Score=439.87 Aligned_cols=198 Identities=34% Similarity=0.705 Sum_probs=182.8
Q ss_pred CCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCCCCCCCCCCcHHHHHHHHHHc
Q psy4960 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVKQY 205 (341)
Q Consensus 126 lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~ 205 (341)
||++||||+++ +|+||||||.||||||||++++||++++++++..+.||+|+|+||+..+.||+||++..|++|+.++
T Consensus 1 lP~~~DwR~~~--~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~g~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~y~~~~ 78 (208)
T 1o0e_A 1 LPEQIDWRKKG--AVTPVKNQGSCGSCWAFSTVSTVESINQIRTGNLISLSEQELVDCDKKNHGCLGGAFVFAYQYIINN 78 (208)
T ss_dssp CCSCEEGGGGT--CCCCCCBCCSSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHH
T ss_pred CCCcCcCCCCC--CCCCCccCCCCccHHHHHHHHHHHHHHHHhcCCceecCHHHhhhhcCCCCCCCCCCHHHHHHHHHHh
Confidence 69999999999 9999999999999999999999999999999999999999999999778899999999999999998
Q ss_pred -CCCCCCCCCCcCCCCCccccccccccceeeeccceeechH---H-HHHHHHhcCCeEEEEec-c-ccccCCCCcccCCC
Q psy4960 206 -GLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV---D-HMMHLLQSGPIGVYLNH-R-LIESYDGNPIRRND 278 (341)
Q Consensus 206 -Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~---d-ik~~l~~~gPv~v~~~~-~-~f~~y~~Gv~~~~~ 278 (341)
|+++|++|||.+... .|+. ....+++.+ |..++. + |+++|++ |||+|+|++ . +|++|++|||.+
T Consensus 79 ~Gi~~e~~yPY~~~~~---~C~~--~~~~~~i~~-~~~v~~~~~~~i~~~l~~-GPV~v~i~~~~~~f~~Y~~Gvy~~-- 149 (208)
T 1o0e_A 79 GGIDTQANYPYKAVQG---PCQA--ASKVVSIDG-YNGVPFCNEXALKQAVAV-QPSTVAIDASSAQFQQYSSGIFSG-- 149 (208)
T ss_dssp TCBCBTTTSCCCSSCC---CCCC--CCCCBCCCE-EEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC--
T ss_pred CCcCcccccCccCCCC---cCCC--CCceEEeCe-EEEeCCCCHHHHHHHHHh-CCEEEEEEccCcccccccCceECC--
Confidence 999999999999887 8986 345678888 888874 2 8999985 999999999 4 899999999987
Q ss_pred CCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCC--CcccccCceeEEee
Q psy4960 279 WACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGA--NACGIESYAYLASV 340 (341)
Q Consensus 279 ~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~--n~Cgi~~~~~~~~~ 340 (341)
.|+. .++|||+|||||+ +|||||||||++||++|||||+|+. |.|||++++++|++
T Consensus 150 -~c~~-~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~~~~~~~~Cgi~~~~~~p~~ 207 (208)
T 1o0e_A 150 -PCGT-KLNHGVTIVGYQA----NYWIVRNSWGRYWGEKGYIRMLRVGGCGLCGIARLPYYPTK 207 (208)
T ss_dssp -CCCS-CCCEEEEEEEECS----SEEEEECSBCTTSTBTTEEEEECCSTTCGGGTTSSCEEEEC
T ss_pred -CCCC-cCCEEEEEEEeCC----CeEEEEcCCCCcccCCcEEEEEcCCCCCcCCCcccceeeec
Confidence 5765 5799999999996 8999999999999999999999997 89999999999986
No 32
>2bdz_A Mexicain; cysteine protease, peptidase_C1, papain-like, HYDR; HET: E64; 2.10A {Jacaratia mexicana}
Probab=100.00 E-value=1.1e-62 Score=442.26 Aligned_cols=201 Identities=30% Similarity=0.703 Sum_probs=184.9
Q ss_pred CCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCCCCCCCCCCcHHHHHHHHHHc
Q psy4960 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVKQY 205 (341)
Q Consensus 126 lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~ 205 (341)
||++||||+++ +|+||||||.||||||||++++||++++++++..+.||+|+|+||+..+.||+||++..|++|++++
T Consensus 1 lP~~~DwR~~~--~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~y~~~~ 78 (214)
T 2bdz_A 1 YPESIDWREKG--AVTPVKNQNPCGSCWAFSTVATIEGINKIITGQLISLSEQELLDCERRSHGCDGGYQTTSLQYVVDN 78 (214)
T ss_dssp CCSCEETTTTT--CCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCBCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHH
T ss_pred CCCcEeCCCCC--CCCCCccCCCCccHHHHHhHHHHHHHHHHhcCCccccCHHHHHhhcCCCCCCCCCCHHHHHHHHHHh
Confidence 69999999999 9999999999999999999999999999999999999999999999778899999999999999999
Q ss_pred CCCCCCCCCCcCCCCCccccccccc-cceeeeccceeechH----HHHHHHHhcCCeEEEEec--cccccCCCCcccCCC
Q psy4960 206 GLESQADYPYRNKENITFRCTYEKE-KAKVFVQDTWVTSGV----DHMMHLLQSGPIGVYLNH--RLIESYDGNPIRRND 278 (341)
Q Consensus 206 Gi~~e~~yPY~~~~~~~~~C~~~~~-~~~~~i~~~y~~~~~----dik~~l~~~gPv~v~~~~--~~f~~y~~Gv~~~~~ 278 (341)
|+++|++|||.+... .|..... ...+++.+ |..++. +|+++|++ |||+|+|++ ++|++|++|||..
T Consensus 79 Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~-y~~v~~~~~~~i~~~l~~-gPV~v~i~~~~~~f~~Y~~Giy~~-- 151 (214)
T 2bdz_A 79 GVHTEREYPYEKKQG---RCRAKDKKGPKVYITG-YKYVPANDEISLIQAIAN-QPVSVVTDSRGRGFQFYKGGIYEG-- 151 (214)
T ss_dssp CEEBTTTSCCCSSCC---CCCTTTCCSCEECCCE-EEEECSSBHHHHHHHHHH-SCEEEEECCCSHHHHTCCSSEECC--
T ss_pred CCCccccCCCCCCCC---CCCCCCCCCceeeecC-EEEeCCCcHHHHHHHHHh-CCEEEEEeeChhHhhcccCceecC--
Confidence 999999999999887 8987554 45688888 988864 29999986 999999999 4899999999987
Q ss_pred CCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCC----CcccccCceeEEeeC
Q psy4960 279 WACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGA----NACGIESYAYLASVK 341 (341)
Q Consensus 279 ~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~----n~Cgi~~~~~~~~~~ 341 (341)
.|+. .++|||+|||||+ +|||||||||++||++|||||+|+. |+|||++.+++|+++
T Consensus 152 -~~~~-~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~~~~~~~~~~Cgi~~~~~~p~~~ 212 (214)
T 2bdz_A 152 -PCGT-NTDHAVTAVGYGK----TYLLLKNSWGPNWGEKGYIRIKRASGRSKGTCGVYTSSFFPIKG 212 (214)
T ss_dssp -SCCS-CCCEEEEEEEECS----SEEEEECSBCTTSTBTTEEEEECCCSBSSCGGGTTSCEEEEECC
T ss_pred -CCCC-CCCeEEEEEEcCC----CeEEEEeCCCCCcccCCEEEEEcCCCCCCCcccccccceEEEec
Confidence 5765 5899999999996 8999999999999999999999996 899999999999974
No 33
>3f75_A Toxopain-2, cathepsin L protease; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii} SCOP: d.3.1.0
Probab=100.00 E-value=4e-63 Score=448.27 Aligned_cols=205 Identities=30% Similarity=0.616 Sum_probs=189.6
Q ss_pred CCCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCCC--CCCCCCCcHHHHHHHH
Q psy4960 125 PLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHG--NLNCNGGNIDVAFEYV 202 (341)
Q Consensus 125 ~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~--~~gC~GG~~~~a~~~~ 202 (341)
+||++||||+++ +|+||||||.||||||||++++||+++++++++.+.||+|+|++|+.. +.||+||++..|++|+
T Consensus 6 ~lP~~~Dwr~~~--~v~pVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~~c~~~~~~~gC~GG~~~~a~~~~ 83 (224)
T 3f75_A 6 ELPAGVDWRSRG--CVTPVKDQRDCGSCWAFSTTGALEGAHCAKTGKLVSLSEQELMDCSRAEGNQSCSGGEMNDAFQYV 83 (224)
T ss_dssp GSCSCEEHHHHT--CCCCCCBCCSSSCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCGGGTCCGGGCBCHHHHHHHH
T ss_pred CCCCceecccCC--CCCCCccCCCCccHHHHHHHHHHHHHHHHhcCCCceeCHHHHhhcccCCCCCCCCCCCHHHHHHHH
Confidence 489999999999 999999999999999999999999999999999999999999999864 7899999999999999
Q ss_pred HH-cCCCCCCCCCCcCCCCCccccccccccceeeeccceeechH---H-HHHHHHhcCCeEEEEec-c-ccccCCCCccc
Q psy4960 203 KQ-YGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGV---D-HMMHLLQSGPIGVYLNH-R-LIESYDGNPIR 275 (341)
Q Consensus 203 ~~-~Gi~~e~~yPY~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~---d-ik~~l~~~gPv~v~~~~-~-~f~~y~~Gv~~ 275 (341)
.+ .||++|++|||.+... .|.........++.+ |..++. + |+++|. +|||+++|++ . +|++|++|||.
T Consensus 84 ~~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~i~~-~~~~~~~~~~~l~~~l~-~gPV~v~i~~~~~~f~~y~~Giy~ 158 (224)
T 3f75_A 84 LDSGGICSEDAYPYLARDE---ECRAQSCEKVVKILG-FKDVPRRSEAAMKAALA-KSPVSIAIEADQMPFQFYHEGVFD 158 (224)
T ss_dssp HHHTCBCBTTTSCCCSSCC---CCCGGGSCCCBCCSE-EEECCSSCHHHHHHHHH-HSCEEEEECCCSHHHHTEEEEEEC
T ss_pred HHhCCccccccCCCcCCCC---CCCcCCCCceEEecc-EEEeCCChHHHHHHHHc-CCCEEEEEeccchhhhcCccceEC
Confidence 98 6999999999999888 898776666778888 988864 2 999998 9999999999 4 89999999998
Q ss_pred CCCCCCCCCCCCeEEEEEEEeec--CCeeEEEEEcCCCCCCCCCcEEEEEeCC---CcccccCceeEEee
Q psy4960 276 RNDWACNPHKLDHAVAIVGYGEK--NGILTWIVRNSWGDIGPDHGYFQIERGA---NACGIESYAYLASV 340 (341)
Q Consensus 276 ~~~~~~~~~~~~Hav~iVGyg~~--~g~~ywivkNSWG~~WG~~GY~~i~r~~---n~Cgi~~~~~~~~~ 340 (341)
+ .|+ ..++|||+|||||++ ++++|||||||||++||++|||||+|+. |.|||+++++||++
T Consensus 159 ~---~~~-~~~~Hav~iVGyg~~~~~g~~ywivkNSWG~~WG~~Gy~~i~~~~~~~~~cgi~~~~~~p~~ 224 (224)
T 3f75_A 159 A---SCG-TDLDHGVLLVGYGTDKESKKDFWIMKNSWGTGWGRDGYMYMAMHKGEEGQCGLLLDASFPVM 224 (224)
T ss_dssp C---CCC-CCCCEEEEEEEEEEETTTTEEEEEEECSBCTTSTBTTEEEEESCSCTTCGGGTTSSCEEEEC
T ss_pred C---CCC-CccCeEEEEEEEecccCCCCCEEEEECCcCcchhhCCEEEEEcCCCCCCcCcccCceeeeeC
Confidence 5 674 468999999999987 8999999999999999999999999998 99999999999985
No 34
>3ioq_A CMS1MS2; caricaceae, cysteine protease, papain family, hydrolase; HET: E64 SO4; 1.87A {Carica candamarcensis} SCOP: d.3.1.1
Probab=100.00 E-value=1.3e-62 Score=441.70 Aligned_cols=201 Identities=31% Similarity=0.668 Sum_probs=183.2
Q ss_pred CCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCCCCCCCCCCcHHHHHHHHHHc
Q psy4960 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVKQY 205 (341)
Q Consensus 126 lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~ 205 (341)
||++||||+++ +|+||||||.||||||||++++||++++++++..+.||+|+|+||+..+.||+||++..|++|++++
T Consensus 1 lP~~~DwR~~~--~vtpVkdQg~cGsCWAfa~~~~le~~~~i~~~~~~~lS~q~l~dC~~~~~gC~GG~~~~a~~~~~~~ 78 (213)
T 3ioq_A 1 IPTSIDWRQKG--AVTPVRNQGGCGSCWTFSSVAAVEGINKIVTGQLLSLSEQELLDCERRSYGCRGGFPLYALQYVANS 78 (213)
T ss_dssp CCSCEEGGGGT--CCCCCCBCTTSBCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCTTSCTTBCCCHHHHHHHHHHH
T ss_pred CCCCCCcccCC--CCCCCCcCCCChhHHHHHHHHHHHHHHHHHcCCCcccCHHHhhhhcCCCCCCCCCCHHHHHHHHHHc
Confidence 79999999999 9999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred CCCCCCCCCCcCCCCCcccccccc-ccceeeeccceeechH---HHHHHHHhcCCeEEEEec--cccccCCCCcccCCCC
Q psy4960 206 GLESQADYPYRNKENITFRCTYEK-EKAKVFVQDTWVTSGV---DHMMHLLQSGPIGVYLNH--RLIESYDGNPIRRNDW 279 (341)
Q Consensus 206 Gi~~e~~yPY~~~~~~~~~C~~~~-~~~~~~i~~~y~~~~~---dik~~l~~~gPv~v~~~~--~~f~~y~~Gv~~~~~~ 279 (341)
|+++|++|||.+... .|.... ....+++.+ |..++. ++++++..+|||+++|++ ++|+.|++|||..
T Consensus 79 Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~i~~-~~~v~~~~~~~~~~~~~~GPV~v~i~~~~~~f~~y~~Giy~~--- 151 (213)
T 3ioq_A 79 GIHLRQYYPYEGVQR---QCRASQAKGPKVKTDG-VGRVPRNNEQALIQRIAIQPVSIVVEAKGRAFQNYRGGIFAG--- 151 (213)
T ss_dssp CEEBGGGSCCCSSCC---CCCGGGCCSCEECCCE-EEECCSSCHHHHHHHHTTSCEEEEECCCSHHHHTCCSSEECC---
T ss_pred CCCchhccCcCCCCC---CCCCCccCCceEEecc-EEEeCCchHHHHHHHHHhCCEEEEEEechhhhhhccCCeEcC---
Confidence 999999999998887 898643 356678888 998875 255555567999999999 5899999999987
Q ss_pred CCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCC----CcccccCceeEEee
Q psy4960 280 ACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGA----NACGIESYAYLASV 340 (341)
Q Consensus 280 ~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~----n~Cgi~~~~~~~~~ 340 (341)
.|. ..++|||+|||||+ +|||||||||++||++|||||+|+. |+|||+++++||++
T Consensus 152 ~~~-~~~~HaV~iVGyg~----~yWivkNSWG~~WGe~Gy~~i~r~~~~~~~~Cgi~~~~~~p~~ 211 (213)
T 3ioq_A 152 PCG-TSIDHAVAAVGYGN----DYILIKNSWGTGWGEGGYIRIKRGSGNPQGACGVLSDSVFPTK 211 (213)
T ss_dssp SCC-SCCCEEEEEEEEET----TEEEEECSBCTTSTBTTEEEEESSCSSTTCGGGTTSCCEEEEC
T ss_pred CCC-CccCceEEEEecCC----CeEEEECCCCCCcccCCeEEEEcCCCCCCCcccccCcceEeEe
Confidence 564 46799999999994 8999999999999999999999998 89999999999986
No 35
>2fo5_A Cysteine proteinase EP-B 2; EP-B2, EPB2, EPB, cysteine endoprotease, endopeptidase, LEUP hydrolase; HET: AR7; 2.20A {Hordeum vulgare}
Probab=100.00 E-value=2e-62 Score=452.53 Aligned_cols=206 Identities=35% Similarity=0.701 Sum_probs=187.8
Q ss_pred CCCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCC-CCCCCCCCcHHHHHHHHH
Q psy4960 125 PLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH-GNLNCNGGNIDVAFEYVK 203 (341)
Q Consensus 125 ~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~-~~~gC~GG~~~~a~~~~~ 203 (341)
+||++||||+++ +|+||||||.||||||||++++||++++|++++.+.||+|+|+||+. .+.||+||++..|++|+.
T Consensus 3 ~lP~~~DwR~~g--~vtpVkdQg~CGSCWAFaa~~alE~~~~i~~g~~~~LSeQ~lvdC~~~~~~GC~GG~~~~a~~yi~ 80 (262)
T 2fo5_A 3 DLPPSVDWRQKG--AVTGVKDQGKCGSCWAFSTVVSVEGINAIRTGSLVSLSEQELIDCDTADNDGCQGGLMDNAFEYIK 80 (262)
T ss_dssp CCCSCEETTTTT--CCCCCCBCTTSCCHHHHHHHHHHHHHHHHHHSCCCCBCHHHHHHHCCSSCCGGGCBCHHHHHHHHH
T ss_pred CCCCcccCCCCC--CCCCCCCCCCCchHHHHHHHHHHHHHHHHHcCCCCCcCHHHHHhhcCCCCCCCCCCCHHHHHHHHH
Confidence 489999999999 99999999999999999999999999999999999999999999996 588999999999999999
Q ss_pred Hc-CCCCCCCCCCcCCCCCcccccccc---ccc-eeeeccceeechH---H-HHHHHHhcCCeEEEEec--cccccCCCC
Q psy4960 204 QY-GLESQADYPYRNKENITFRCTYEK---EKA-KVFVQDTWVTSGV---D-HMMHLLQSGPIGVYLNH--RLIESYDGN 272 (341)
Q Consensus 204 ~~-Gi~~e~~yPY~~~~~~~~~C~~~~---~~~-~~~i~~~y~~~~~---d-ik~~l~~~gPv~v~~~~--~~f~~y~~G 272 (341)
++ ||++|++|||.+... .|.... ... .+++.+ |..++. + |+++|++ |||+++|++ ++|++|++|
T Consensus 81 ~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~~~~i~~-y~~v~~~~e~~ik~al~~-GPV~v~i~~~~~~f~~Y~sG 155 (262)
T 2fo5_A 81 NNGGLITEAAYPYRAARG---TCNVARAAQNSPVVVHIDG-HQDVPANSEEDLARAVAN-QPVSVAVEASGKAFMFYSEG 155 (262)
T ss_dssp HTTCEEBTTTSCCCSSCC---CCCHHHHHHHCCCEECCCE-EEECCTTCHHHHHHHHHH-SCEEEEECCCSHHHHTCCSS
T ss_pred HcCCcCchhcCCCcCccC---ccCCcccccCCceeEEece-EEEcCCchHHHHHHHHHh-CCEEEEEecChHHHhccCCc
Confidence 98 999999999999887 898654 345 678888 988874 2 9999986 999999999 489999999
Q ss_pred cccCCCCCCCCCCCCeEEEEEEEeec-CCeeEEEEEcCCCCCCCCCcEEEEEeCC----CcccccCceeEEeeC
Q psy4960 273 PIRRNDWACNPHKLDHAVAIVGYGEK-NGILTWIVRNSWGDIGPDHGYFQIERGA----NACGIESYAYLASVK 341 (341)
Q Consensus 273 v~~~~~~~~~~~~~~Hav~iVGyg~~-~g~~ywivkNSWG~~WG~~GY~~i~r~~----n~Cgi~~~~~~~~~~ 341 (341)
||.. .|+. ..+|||+|||||++ +|++|||||||||++||++|||||+|+. |.|||++.+.+|++.
T Consensus 156 Vy~~---~c~~-~~~HaV~IVGyg~~~~G~~YWivkNSWG~~WGe~GY~ri~r~~n~~~~~CgI~~~~~~p~~~ 225 (262)
T 2fo5_A 156 VFTG---ECGT-ELDHGVAVVGYGVAEDGKAYWTVKNSWGPSWGEQGYIRVEKDSGASGGLCGIAMEASYPVKT 225 (262)
T ss_dssp EECC---CCCC-CCCEEEEEEEEEECTTSCEEEEEECSBCTTSTBTTEEEEESSCSCTTCGGGTTTSCEEEECC
T ss_pred eECC---CCCC-cCCEEEEEEEEcccCCCceEEEEEeCCCCCCCCCeEEEEEcCCCCCCCccceeeeeeEEEec
Confidence 9987 5765 47999999999987 5999999999999999999999999997 459999999999863
No 36
>3cbj_A Cathepsin B; cathepsin B, occluding loop, chagas disease, glyco hydrolase, lysosome, protease, thiol protease, zymogen, CYT vesicle; 1.80A {Homo sapiens} PDB: 3cbk_A 1gmy_A* 3ai8_B* 3k9m_A 1the_A* 1cpj_A* 1cte_A 2dcc_A* 2dc6_A* 1ito_A* 2dc8_A* 2dc9_A* 2dca_A* 2dcb_A* 2dc7_A* 2dcd_A* 1qdq_A* 1csb_B* 1huc_B 2ipp_B ...
Probab=100.00 E-value=1.2e-60 Score=442.74 Aligned_cols=213 Identities=27% Similarity=0.471 Sum_probs=176.7
Q ss_pred CCCCeeeccccCcc--ccccccccCCccchHHHHHHHHHHHHHHHHhC--CCCcCChhHHhhcCC--CCCCCCCCcHHHH
Q psy4960 125 PLPKSLDWRQSKVK--VLNPVESQGRCGSCWAFATTAILESQVALLKK--TLYPLSKSQLVECDH--GNLNCNGGNIDVA 198 (341)
Q Consensus 125 ~lP~~~Dwr~~g~~--~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~--~~~~lS~q~l~dc~~--~~~gC~GG~~~~a 198 (341)
+||++||||+..++ .|+||||||.||||||||++++||++++|+++ ..+.||+|+|+||+. .+.||+||++..|
T Consensus 6 ~lP~~~D~R~~w~~~~~vt~VkdQg~CGSCWAfa~~~ale~~~~i~~~~~~~~~LS~q~lvdC~~~~~~~gC~GG~~~~a 85 (266)
T 3cbj_A 6 KLPASFDAREQWPQCPTIKEIRDQGSCGSAWAFGAVEAISDRICIHTNAHVSVEVSAEDLLTCCGSMCGDGCNGGYPAEA 85 (266)
T ss_dssp CCCSCEEHHHHSTTCGGGGCCCBCCSSBCHHHHHHHHHHHHHHHHHTTTSCCCCBCHHHHHHHCGGGGBCTTBCBCHHHH
T ss_pred CCCccCcchhccCCCCcCCCCCCCCCcchHHHHHHHHHHHHHHHHHhCCCCccccCHHHHHhhccccCCCCCCCCCHHHH
Confidence 49999999987211 79999999999999999999999999999875 379999999999985 4789999999999
Q ss_pred HHHHHHcCCCC-------CCCCCCcC---------CCC------Cccccccccc--------cceeeeccceeechH---
Q psy4960 199 FEYVKQYGLES-------QADYPYRN---------KEN------ITFRCTYEKE--------KAKVFVQDTWVTSGV--- 245 (341)
Q Consensus 199 ~~~~~~~Gi~~-------e~~yPY~~---------~~~------~~~~C~~~~~--------~~~~~i~~~y~~~~~--- 245 (341)
++|++++|+++ |++|||.. ... .++.|..... ........ +..++.
T Consensus 86 ~~y~~~~Gi~~~~~Y~~~e~~~PY~~~~~~~~~~~~~~~C~~~~~~p~c~~~c~~~~~~~~~~~~~~~~~-~~~v~~~~~ 164 (266)
T 3cbj_A 86 WNFWTRKGLVSGGLYESHVGCRPYSIPPCEAHVNGARPPCTGEGDTPKCSKICEPGYSPTYKQDKHYGYN-SYSVSNSEK 164 (266)
T ss_dssp HHHHHHTCBCBCCSTTCCCSSSCCCSCCCSCCCSCSSCCCCSCCCCCCCCCSCCTTCCSCTGGGCBCBSC-CEECCSCHH
T ss_pred HHHHHHhCcCcCccccccccccCcccccccccccCCCCCCccccCCCccccccCCCCcceeeeeeeeeee-eEEeCCCHH
Confidence 99999999999 99999983 222 0112222110 00111223 334543
Q ss_pred HHHHHHHhcCCeEEEEec-cccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEe
Q psy4960 246 DHMMHLLQSGPIGVYLNH-RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIER 324 (341)
Q Consensus 246 dik~~l~~~gPv~v~~~~-~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r 324 (341)
+||++|+++|||+|+|++ ++|+.|++|||.+ .|....++|||+|||||+++|++|||||||||++||++|||||+|
T Consensus 165 ~i~~~i~~~GPV~v~i~~~~~f~~Y~~Gvy~~---~~~~~~~~HaV~iVGyg~~~g~~yWivkNSWG~~WGe~Gy~~i~r 241 (266)
T 3cbj_A 165 DIMAEIYKNGPVEGAFSVYSDFLLYKSGVYQH---VTGEMMGGHAIRILGWGVENGTPYWLVANSWNTDWGDNGFFKILR 241 (266)
T ss_dssp HHHHHHHHHCCEEEEEEEEGGGGGCCSSEECC---CSSCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEEC
T ss_pred HHHHHHHhcCCEEEEEEeccchhhcCCeEEec---CCCCccCCeEEEEEEecccCCceEEEEEcCCCCccCCCCEEEEEc
Confidence 399999999999999999 8999999999987 354445799999999999999999999999999999999999999
Q ss_pred CCCcccccCceeEEeeC
Q psy4960 325 GANACGIESYAYLASVK 341 (341)
Q Consensus 325 ~~n~Cgi~~~~~~~~~~ 341 (341)
+.|.|||++.+++++++
T Consensus 242 g~n~cgI~~~~~~~~p~ 258 (266)
T 3cbj_A 242 GQDHCGIESEVVAGIPR 258 (266)
T ss_dssp SSCGGGTTTSCEECCBC
T ss_pred CCCcccccCceEEEEee
Confidence 99999999999998753
No 37
>3qsd_A Cathepsin B-like peptidase (C01 family); cysteine peptidase, digestive tract, hydrolase-hydrolase INH complex; HET: 074; 1.30A {Schistosoma mansoni} SCOP: d.3.1.0 PDB: 3s3q_A* 3s3r_A*
Probab=100.00 E-value=8.3e-60 Score=434.27 Aligned_cols=212 Identities=25% Similarity=0.464 Sum_probs=174.8
Q ss_pred CCCCeeeccccCcc--ccccccccCCccchHHHHHHHHHHHHHHHHhC--CCCcCChhHHhhcCC-CCCCCCCCcHHHHH
Q psy4960 125 PLPKSLDWRQSKVK--VLNPVESQGRCGSCWAFATTAILESQVALLKK--TLYPLSKSQLVECDH-GNLNCNGGNIDVAF 199 (341)
Q Consensus 125 ~lP~~~Dwr~~g~~--~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~--~~~~lS~q~l~dc~~-~~~gC~GG~~~~a~ 199 (341)
+||++||||+++++ .|+||||||.||||||||++++||++++|+++ ..+.||+|+|+||+. .+.||+||++..|+
T Consensus 2 ~lP~s~D~R~~~~~~~~vtpVkdQg~CGSCWAFaa~~ale~~~~i~~~~~~~~~LSeQ~lvdC~~~~~~GC~GG~~~~a~ 81 (254)
T 3qsd_A 2 EIPSSFDSRKKWPRCKSIATIRDQSRCGSCWAFGAVEAMSDRSCIQSGGKQNVELSAVDLLSCCESCGLGCEGGILGPAW 81 (254)
T ss_dssp CCCSCEEHHHHCTTCGGGGCCCBCCSSBCHHHHHHHHHHHHHHHHHTTTCCCCCBCHHHHHHHCTTSBCTTBCBCHHHHH
T ss_pred CCCCcCccccccCCCCccCCCCCcccCccHHHHHHHHHHHHHHHHHhCCCccccCCHHHHHhhhcCCCCCCCCCCHHHHH
Confidence 38999999998321 79999999999999999999999999999976 689999999999974 46899999999999
Q ss_pred HHHHHcCCCCCCCC-------CCcCCC------CCcccccc----------cccc----c----eeeeccceeechH---
Q psy4960 200 EYVKQYGLESQADY-------PYRNKE------NITFRCTY----------EKEK----A----KVFVQDTWVTSGV--- 245 (341)
Q Consensus 200 ~~~~~~Gi~~e~~y-------PY~~~~------~~~~~C~~----------~~~~----~----~~~i~~~y~~~~~--- 245 (341)
+|++++||++|++| ||.... +....|.. .... . ...... ...++.
T Consensus 82 ~yi~~~Gi~~e~~y~~~~~c~PY~~~~c~~~~~~~~~~C~~~~~~~~~c~~~c~~~~~~~~~~~~~~~~~-~~~~~~~~~ 160 (254)
T 3qsd_A 82 DYWVKEGIVTGSSKENHAGCEPYPFPKCEHHTKGKYPPCGSKIYKTPRCKQTCQKKYKTPYTQDKHRGKS-SYNVKNDEK 160 (254)
T ss_dssp HHHHHTCBCBCCCTTTCCSSSCCSSCCCBCSSCSSSCBCCSCCCCCCCCCCCCCTTCCSCGGGGCBCCSE-EEECCSCHH
T ss_pred HHHHHcCCCcccccccCcCcCCcccccccccccCcCCCCcccccCCccccccccCCccceeeeeeeeeee-eEecCCcHH
Confidence 99999999999988 997210 11113421 1100 0 011111 223443
Q ss_pred HHHHHHHhcCCeEEEEec-cccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEe
Q psy4960 246 DHMMHLLQSGPIGVYLNH-RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIER 324 (341)
Q Consensus 246 dik~~l~~~gPv~v~~~~-~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r 324 (341)
+||++|+++|||+|+|++ ++|++|++|||.. .+....++|||+|||||++++++|||||||||++||++|||||+|
T Consensus 161 ~i~~~l~~~gPv~~~~~~~~~f~~y~~Gi~~~---~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~Gy~~i~r 237 (254)
T 3qsd_A 161 AIQKEIMKYGPVEAGFTVYEDFLNYKSGIYKH---ITGETLGGHAIRIIGWGVENKAPYWLIANSWNEDWGENGYFRIVR 237 (254)
T ss_dssp HHHHHHHHHCCEEEEEEEEGGGGGCCSSEECC---CSSCEEEEEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEEC
T ss_pred HHHHHHHHcCCEEEEEEeccccccccCCeecc---CCCCCCCCeEEEEEEEeecCCeeEEEEEeCCCCCcccCCeEEEEc
Confidence 399999999999999999 8999999999987 344445799999999999999999999999999999999999999
Q ss_pred CCCcccccCceeEEee
Q psy4960 325 GANACGIESYAYLASV 340 (341)
Q Consensus 325 ~~n~Cgi~~~~~~~~~ 340 (341)
+.|+|||++.+++++.
T Consensus 238 g~n~CgI~~~~~~~~p 253 (254)
T 3qsd_A 238 GRDECSIESEVTAGRI 253 (254)
T ss_dssp SSCGGGTTSSEEEEEC
T ss_pred CCCeecCCCceEeecc
Confidence 9999999999998864
No 38
>1deu_A Procathepsin X; cysteine protease, proregion, prosegment, HY; 1.70A {Homo sapiens} SCOP: d.3.1.1 PDB: 1ef7_A
Probab=100.00 E-value=5.9e-60 Score=440.04 Aligned_cols=210 Identities=27% Similarity=0.523 Sum_probs=184.4
Q ss_pred CCCCCeeeccccC-ccccccccccC---CccchHHHHHHHHHHHHHHHHhC-C--CCcCChhHHhhcCCCCCCCCCCcHH
Q psy4960 124 GPLPKSLDWRQSK-VKVLNPVESQG---RCGSCWAFATTAILESQVALLKK-T--LYPLSKSQLVECDHGNLNCNGGNID 196 (341)
Q Consensus 124 ~~lP~~~Dwr~~g-~~~v~pV~dQg---~cGsCwAfA~~~~le~~~~~~~~-~--~~~lS~q~l~dc~~~~~gC~GG~~~ 196 (341)
.+||++||||+.+ .++|+|||||| .||||||||++++||++++|+++ . .+.||+|+|+||+.. .||+||++.
T Consensus 34 ~~lP~~~DwR~~~~~~~vtpVkdQg~~~~CGSCWAfa~~~alE~~~~i~~~g~~~~~~LS~Q~lvdC~~~-~gC~GG~~~ 112 (277)
T 1deu_A 34 ADLPKSWDWRNVDGVNYASITRNQHIPQYCGSCWAHASTSAMADRINIKRKGAWPSTLLSVQNVIDCGNA-GSCEGGNDL 112 (277)
T ss_dssp GGSCSCEETTSBTTBCCCCCCCBTTCSSCCBCHHHHHHHHHHHHHHHHHTTTCSSCCCBCHHHHHHHSSS-EETBEECHH
T ss_pred ccCCCceecccCCCCCcCCccccCCCCCCCcchHHHHHHHHHHHHHHHHhCCCCCCcccCHHHHHhCcCC-CCCCCCCHH
Confidence 3599999999973 12899999999 99999999999999999999875 3 479999999999863 799999999
Q ss_pred HHHHHHHHcCCCCCCCCCCcCCCCCcccccc-c--------------cccceeeeccceeechH-H-HHHHHHhcCCeEE
Q psy4960 197 VAFEYVKQYGLESQADYPYRNKENITFRCTY-E--------------KEKAKVFVQDTWVTSGV-D-HMMHLLQSGPIGV 259 (341)
Q Consensus 197 ~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~-~--------------~~~~~~~i~~~y~~~~~-d-ik~~l~~~gPv~v 259 (341)
.|++|+.++||++|++|||.+... .|.. . .....+++.+ |..++. + ||++|+++|||+|
T Consensus 113 ~a~~yi~~~Gi~~e~~yPY~~~~~---~C~~~~~~~~~~~~~~c~~~~~~~~~~i~~-y~~v~~~~~i~~~i~~~GPV~v 188 (277)
T 1deu_A 113 SVWDYAHQHGIPDETCNNYQAKDQ---ECDKFNQCGTCNEFKECHAIRNYTLWRVGD-YGSLSGREKMMAEIYANGPISC 188 (277)
T ss_dssp HHHHHHHHTCBCBGGGSCCCSSCC---CCCHHHHSEEEEETTEEEECSSCCCBCEEE-EEEECSHHHHHHHHHHHCCEEE
T ss_pred HHHHHHHHcCCCcCccCCCcCCCC---CccccccccccccCcccccccCcceEEece-eEecCCHHHHHHHHHHcCCEEE
Confidence 999999999999999999998877 6762 1 1123467777 877765 3 9999999999999
Q ss_pred EEec-cccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCCC--------ccc
Q psy4960 260 YLNH-RLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGAN--------ACG 330 (341)
Q Consensus 260 ~~~~-~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~n--------~Cg 330 (341)
+|++ .+|+.|++|||..+ .| ...++|||+|||||+++|++|||||||||++||++|||||+|+.| .||
T Consensus 189 ~i~~~~~f~~Y~~GIy~~~--~~-~~~~~HaV~iVGyg~~~g~~YWivkNSWG~~WGe~GY~~i~rg~n~~g~g~~~~cg 265 (277)
T 1deu_A 189 GIMATERLANYTGGIYAEY--QD-TTYINHVVSVAGWGISDGTEYWIVRNSWGEPWGERGWLRIVTSTYKDGKGARYNLA 265 (277)
T ss_dssp EECCCHHHHTCCSSEECBC--CS-CCCCCEEEEEEEEEEETTEEEEEEECSBCTTSTBTTEEEEECTTHHHHTGGGTBTT
T ss_pred EEecccccccCcCcEECCC--CC-CCcCCeEEEEEEecccCCccEEEEEeCCCCccCCCcEEEEEcCCCcccccccccce
Confidence 9999 79999999999882 34 346899999999999999999999999999999999999999998 999
Q ss_pred ccCceeEEeeC
Q psy4960 331 IESYAYLASVK 341 (341)
Q Consensus 331 i~~~~~~~~~~ 341 (341)
||+.+++++.+
T Consensus 266 Ie~~~~~~~p~ 276 (277)
T 1deu_A 266 IEEHCTFGDPI 276 (277)
T ss_dssp TTSCEEEEEEC
T ss_pred eccccEeeccc
Confidence 99999999864
No 39
>2wbf_X Serine-repeat antigen protein; SERA, malaria, vacuole, protease, cathepsin, hydrolase, glycoprotein, thiol protease; HET: DMS; 1.60A {Plasmodium falciparum} PDB: 3ch3_X 3ch2_X
Probab=100.00 E-value=3.1e-55 Score=406.20 Aligned_cols=205 Identities=24% Similarity=0.488 Sum_probs=166.4
Q ss_pred Ceeecccc-Cccccc--cccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCC--CCCCCCCCc-HHHHHHH
Q psy4960 128 KSLDWRQS-KVKVLN--PVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH--GNLNCNGGN-IDVAFEY 201 (341)
Q Consensus 128 ~~~Dwr~~-g~~~v~--pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~--~~~gC~GG~-~~~a~~~ 201 (341)
--.|||+. + +++ ||||||.||||||||++++||++++++++..+.||+|+|+||+. .+.||+||. +..++.+
T Consensus 9 ~~~dWR~~~~--~~~it~VkdQg~CGSCWAFaa~~alE~~~~i~~~~~~~LS~Q~lvdC~~~~~~~GC~GG~~~~~~~~~ 86 (265)
T 2wbf_X 9 YCNRLKDENN--CISNLQVEDQGNCDTSWIFASKYHLETIRCMKGYEPTKISALYVANCYKGEHKDRCDEGSSPMEFLQI 86 (265)
T ss_dssp CBCGGGCTTS--TGGGSCCCBCTTSSCHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHCCSSSCCCTTTCCCCHHHHHHH
T ss_pred HHHhhccCCC--CCCCCCCcCCCCChhHHHHHHHHHHHHHHHHhcCCCCCcCHHHHHHhhcccCCCCCCCCCCHHHHHHH
Confidence 46899998 6 777 99999999999999999999999999999999999999999985 378999986 5566788
Q ss_pred HHHcC-CCCCCCCCCcCC--CCCccccccccc-----------------cceeeeccceeechH-----------H-HHH
Q psy4960 202 VKQYG-LESQADYPYRNK--ENITFRCTYEKE-----------------KAKVFVQDTWVTSGV-----------D-HMM 249 (341)
Q Consensus 202 ~~~~G-i~~e~~yPY~~~--~~~~~~C~~~~~-----------------~~~~~i~~~y~~~~~-----------d-ik~ 249 (341)
++++| |++|++|||... .. .|+.... ...+++.+ |..++. + ||+
T Consensus 87 i~~~Ggi~~e~~yPY~~~~~~~---~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-y~~~~~~~~~~~~~~~~~~ik~ 162 (265)
T 2wbf_X 87 IEDYGFLPAESNYPYNYVKVGE---QCPKVEDHWMNLWDNGKILHNKNEPNSLDGKG-YTAYESERFHDNMDAFVKIIKT 162 (265)
T ss_dssp HHHHCCCCBTTTSCCCGGGTTS---CCCCCCTTCCCTTTTCEECCCCCSSSTTCCSS-EEEEEGGGGTTCHHHHHHHHHH
T ss_pred HHHcCCCCCccccCCcCCCCCC---CCCCccccccccccccccccccCCCceeecCC-ceEeeccccccchhhHHHHHHH
Confidence 88886 999999999864 34 6764321 12345666 665531 2 999
Q ss_pred HHHhcCCeEEEEeccccccCC-CCcccCCCCCCCCCCCCeEEEEEEEeec---CC--eeEEEEEcCCCCCCCCCcEEEEE
Q psy4960 250 HLLQSGPIGVYLNHRLIESYD-GNPIRRNDWACNPHKLDHAVAIVGYGEK---NG--ILTWIVRNSWGDIGPDHGYFQIE 323 (341)
Q Consensus 250 ~l~~~gPv~v~~~~~~f~~y~-~Gv~~~~~~~~~~~~~~Hav~iVGyg~~---~g--~~ywivkNSWG~~WG~~GY~~i~ 323 (341)
+|+++|||+|+|++.+|+.|+ +|++.. ..|+...++|||+|||||++ +| ++|||||||||++|||+|||||+
T Consensus 163 ~i~~~GPV~v~i~~~~f~~y~~~g~~~~--~~c~~~~~~HaV~iVGyG~~~~~~g~~~~YWivkNSWG~~WGe~GY~ri~ 240 (265)
T 2wbf_X 163 EVMNKGSVIAYIKAENVMGYEFSGKKVK--NLCGDDTADHAVNIVGYGNYVNSEGEKKSYWIVRNSWGPYWGDEGYFKVD 240 (265)
T ss_dssp HHHHHSCEEEEECGGGGCSGGGGSSSEE--CCCCCSCCCEEEEEEEEEEEECTTSCEEEEEEEECSBCTTSTBTTEEEEE
T ss_pred HHHhcCCEEEEEEcccccccccCCcEEc--CCCCCCcCCEEEEEEEEeCCcccCCCcCCEEEEEcCCCCccCCCCEEEEE
Confidence 999999999999996687775 565543 25776679999999999984 56 69999999999999999999999
Q ss_pred e-CCCcccccCceeEEee
Q psy4960 324 R-GANACGIESYAYLASV 340 (341)
Q Consensus 324 r-~~n~Cgi~~~~~~~~~ 340 (341)
| +.|+|||++.+.++++
T Consensus 241 ~~g~n~Cgi~~~~~~~~~ 258 (265)
T 2wbf_X 241 MYGPTHCHFNFIHSVVIF 258 (265)
T ss_dssp SSCCTTCSSCSCCEEEEE
T ss_pred ecCCCccCcceeEEEEec
Confidence 7 5689997777666653
No 40
>3ois_A Cysteine protease; alpha and beta, hydrolase; HET: UDP; 1.65A {Xylella fastidiosa}
Probab=100.00 E-value=5.6e-52 Score=389.11 Aligned_cols=230 Identities=20% Similarity=0.222 Sum_probs=174.2
Q ss_pred ccccCCCCCHHHHHHhccccCCCchhhhhhhhhhhhhhhhcccCCCCCCCeeeccccCccccccccccCCccchHHHHHH
Q psy4960 79 GTSGSSDRSPQEILQRTGLRLTGKEKERLEADRERVKKFLNERKKGPLPKSLDWRQSKVKVLNPVESQGRCGSCWAFATT 158 (341)
Q Consensus 79 g~N~fsD~t~eE~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~ 158 (341)
..|++.++..|.++..||..++..........+.. ....+||++||||+.+ ||||||.||||||||++
T Consensus 17 ~~~~~~~~~~~~~~~~lG~~p~~~d~rd~~~~~~~-------~~~~~lP~s~DwR~~~-----pVkdQG~CGSCWAFAa~ 84 (291)
T 3ois_A 17 RGSHMQTVLKRRKKSGYGYIPDIADIRDFSYTPEK-------SVIAALPPKVDLTPPF-----QVYDQGRIGSCTANALA 84 (291)
T ss_dssp ------CCCCCCCCTTCCEECCCCCTTCCBCCCCH-------HHHHTCCSEEECCCSS-----CCCBCTTSSCHHHHHHH
T ss_pred chhhHhHhhhccccccCCCCCCCCcccccccCCCc-------cccccCCcceecccCC-----CcccCCCCccHHHHHHH
Confidence 66889999998888777655433211110000000 0012499999999952 99999999999999999
Q ss_pred HHHHHHHHHHhCCCCcCChhHHh--hcCC---CC-CCCCCCcHHHHHHHHHHcCCCCCCCCCCcCCCCCccccccc----
Q psy4960 159 AILESQVALLKKTLYPLSKSQLV--ECDH---GN-LNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYE---- 228 (341)
Q Consensus 159 ~~le~~~~~~~~~~~~lS~q~l~--dc~~---~~-~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~~~~~~C~~~---- 228 (341)
++||++++ +++..+.||+|+|+ +|.. .+ .+|.||++..|++|++++||++|++|||.+.+.....|...
T Consensus 85 ~alE~~~~-~~g~~~~lS~q~l~~~~c~~~~~~~~~~c~GG~~~~A~~yi~~~Gi~~e~~yPY~~~~~~~~~C~~~~~~~ 163 (291)
T 3ois_A 85 AAIQFERI-HDKQSPEFIPSRLFIYYNERKIEGHVNYDSGAMIRDGIKVLHKLGVCPEKEWPYGDTPADPRTEEFPPGAP 163 (291)
T ss_dssp HHHHHHHH-HTTCSSCCCBCHHHHHHHHHHHSSCTTSCCCEEHHHHHHHHHHTCCCBGGGSCCCCCCCCTTTCSCCTTCG
T ss_pred HHHHHHHH-HhCCCCCcCcCHHHHHhhhhhhhcCCCCCCCcCHHHHHHHHHHhCCCCHhhCCCCCCcccccccccccccc
Confidence 99999885 46777899999998 6762 23 46889999999999999999999999999874211144431
Q ss_pred ----------cccceeeeccceeechH--H-HHHHHHhcCCeEEEEec-cccccCCC--CcccCCCCCCCCC-CCCeEEE
Q psy4960 229 ----------KEKAKVFVQDTWVTSGV--D-HMMHLLQSGPIGVYLNH-RLIESYDG--NPIRRNDWACNPH-KLDHAVA 291 (341)
Q Consensus 229 ----------~~~~~~~i~~~y~~~~~--d-ik~~l~~~gPv~v~~~~-~~f~~y~~--Gv~~~~~~~~~~~-~~~Hav~ 291 (341)
.....+++.+ |..++. + |+++|+++|||+++|++ ++|+.|++ |||.. +.|... .++|||+
T Consensus 164 ~~~~p~~~C~~~~~~~~i~~-y~~v~~~e~~i~~al~~~gPV~v~~~~~~~f~~y~~~~Gi~~~--~~~~~~~~~~Hav~ 240 (291)
T 3ois_A 164 ASKKPSDQCYKDAQNYKITE-YSRVAQDIDHLKACLAVGSPFVFGFSVYNSWVGNNSLPVRIPL--PTKNDTLEGGHAVL 240 (291)
T ss_dssp GGSCCCHHHHHHHGGGCCCE-EEECCSCHHHHHHHHHTTCCEEEEEEEEHHHHGGGCCCSBCCC--CCTTSCEEEEEEEE
T ss_pred ccCCCCHHHHhhcccceecc-EEEcCcCHHHHHHHHHcCCCEEEEEEeccchhhcCCCCeEEeC--CCCCCCCcCCeEEE
Confidence 1124578888 988875 3 99999999999999999 89999998 99987 355443 3699999
Q ss_pred EEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEeCC
Q psy4960 292 IVGYGEKNGILTWIVRNSWGDIGPDHGYFQIERGA 326 (341)
Q Consensus 292 iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~ 326 (341)
||||| ++++|||||||||++||++|||||+|+.
T Consensus 241 iVGy~--~~~~ywivkNSWG~~WG~~Gy~~i~~~~ 273 (291)
T 3ois_A 241 CVGYD--DEIRHFRIRNSWGNNVGEDGYFWMPYEY 273 (291)
T ss_dssp EEEEE--TTTTEEEEECSBCTTSTBTTEEEEEHHH
T ss_pred EEEEe--CCCCEEEEEeCCCCCCCCCcEEEEEHHH
Confidence 99998 5778999999999999999999999985
No 41
>2cb5_A Protein (bleomycin hydrolase); aminopeptidase, cysteine protease, SELF- compartmentalizing, cylinase; 1.85A {Homo sapiens} SCOP: d.3.1.1 PDB: 1cb5_A
Probab=100.00 E-value=3.7e-42 Score=335.85 Aligned_cols=207 Identities=17% Similarity=0.282 Sum_probs=162.4
Q ss_pred CCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHH-hCCCCcCCh----------------hHHhhcCCC--
Q psy4960 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALL-KKTLYPLSK----------------SQLVECDHG-- 186 (341)
Q Consensus 126 lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~-~~~~~~lS~----------------q~l~dc~~~-- 186 (341)
.|..|+++... .++||+|||+||+|||||++++||+.++++ +++.+.||+ |+|+||+..
T Consensus 48 ~~~~F~~~~~~--~~tpVknQg~cGsCWaFs~~~~le~~~~~k~~~~~~~lSe~yl~fwDKlEkan~flq~lidc~~~~~ 125 (453)
T 2cb5_A 48 AQHVFQHAVPQ--EGKPITNQKSSGRSWIFSCLNVMRLPFMKKLNIEEFEFSQSYLFFWDKVERCYFFLSAFVDTAQRKE 125 (453)
T ss_dssp CCCCCSEECSC--CCSSCCBCCBSSCHHHHHHHHHHHHHHHHHTTCSCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCceeeeecc--CCCCcccCCCccchHhhhhHHHHHHHHHHHhcCCeEeeChHHHHHHHHHHHhhHHHHHHHHHHhccC
Confidence 57789988877 899999999999999999999999999998 578999999 999999732
Q ss_pred ------------CCCCCCCcHHHHHHHHHHcCCCCCCCCCCcCCC---------------------------CCc----c
Q psy4960 187 ------------NLNCNGGNIDVAFEYVKQYGLESQADYPYRNKE---------------------------NIT----F 223 (341)
Q Consensus 187 ------------~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY~~~~---------------------------~~~----~ 223 (341)
+.||+||....|+.++.++||+++++|||.... +.. .
T Consensus 126 ~~d~R~v~~l~~~~gcdGG~~~~a~~~i~kyGl~p~~~yP~~~~s~ns~~mn~~L~~kLr~~a~~LR~~~~~g~~~~~l~ 205 (453)
T 2cb5_A 126 PEDGRLVQFLLMNPANDGGQWDMLVNIVEKYGVIPKKCFPESYTTEATRRMNDILNHKMREFCIRLRNLVHSGATKGEIS 205 (453)
T ss_dssp CTTSHHHHHHHHCTTCSCBCHHHHHHHHHHHCCCBGGGSCCCTGGGBCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CcchhhHHHhcCCCCCCCCChHHHHHHHHHcCccchhhccccccccchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 689999999999999999999999999998641 100 0
Q ss_pred ---------------cc----------cc-------------cc-----cccee--eecc--------------------
Q psy4960 224 ---------------RC----------TY-------------EK-----EKAKV--FVQD-------------------- 238 (341)
Q Consensus 224 ---------------~C----------~~-------------~~-----~~~~~--~i~~-------------------- 238 (341)
.| .. .+ ..... .+.+
T Consensus 206 ~~k~~~l~~iy~il~~clG~pP~~F~~~~~dkd~~~~~~~~~TP~~F~~~~~~~~~~~~~yv~l~n~p~~~~py~~~y~v 285 (453)
T 2cb5_A 206 ATQDVMMEEIFRVVCICLGNPPETFTWEYRDKDKNYEKIGPITPLEFYREHVKPLFNMEDKICLVNDPRPQHKHNKLYTV 285 (453)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCSSEEEEEECTTSCEEEEEEECHHHHHHHHTTTTSCGGGEEEEECCCCTTSCSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHcCCCCceeeEEEEccCCcccccCCCCHHHHHHHhcCCcCCCCCeEEEecCCCCcCcccceeEE
Confidence 13 11 00 00001 2222
Q ss_pred ------------ceeechH-H----HHHHHHhcCCeEEEEeccccccCCCCcccCCCCCC--------------------
Q psy4960 239 ------------TWVTSGV-D----HMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWAC-------------------- 281 (341)
Q Consensus 239 ------------~y~~~~~-d----ik~~l~~~gPv~v~~~~~~f~~y~~Gv~~~~~~~~-------------------- 281 (341)
.|..+|. + ++.+|..+|||.+++++..+.++++|||+. ..|
T Consensus 286 ~~~~Nv~~g~~~~y~Nvp~~~l~~~~~~al~~g~PV~~~~Dv~~~~~~k~GI~~~--~~~~~~~~fg~~~~~m~KaeRl~ 363 (453)
T 2cb5_A 286 EYLSNMVGGRKTLYNNQPIDFLKKMVAASIKDGEAVWFGCDVGKHFNSKLGLSDM--NLYDHELVFGVSLKNMNKAERLT 363 (453)
T ss_dssp TTCCSSTTCCCCCEEECCHHHHHHHHHHHHHTTCCEEEEECTTTTEETTTTEECT--TSBCHHHHHSCCSCSSCHHHHHH
T ss_pred eecCcccccccccccccCHHHHHHHHHHHHHcCCCEEEEEEeChhhccCCcEEcC--ccccchhhcCccccccCHHHHhh
Confidence 0335565 2 557899999999999995556679999986 233
Q ss_pred -CCCCCCeEEEEEEEe--ec-CCe-eEEEEEcCCCCCCCCCcEEEEEeCCCcccccCceeEEee
Q psy4960 282 -NPHKLDHAVAIVGYG--EK-NGI-LTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLASV 340 (341)
Q Consensus 282 -~~~~~~Hav~iVGyg--~~-~g~-~ywivkNSWG~~WG~~GY~~i~r~~n~Cgi~~~~~~~~~ 340 (341)
.....+|||+||||| .+ +|+ +|||||||||++||++|||+|+|+ .++.+++.++|
T Consensus 364 ~~~s~~~HAmlivGyg~~~d~~G~~~yWiVkNSWG~~wG~~GY~~ms~~----wf~ey~~~vvV 423 (453)
T 2cb5_A 364 FGESLMTHAMTFTAVSEKDDQDGAFTKWRVENSWGEDHGHKGYLCMTDE----WFSEYVYEVVV 423 (453)
T ss_dssp TTSCCCCEEEEEEEEEECTTSCSCEEEEEEECSBCTTSTBTTEEEEEHH----HHHHHEEEEEE
T ss_pred ccCCCCCeEEEEEEeccccccCCCccEEEEEcCcCCCcCcCceEEechh----hHhhceEEEEe
Confidence 234589999999999 65 787 999999999999999999999986 66666666654
No 42
>2e01_A Cysteine proteinase 1; bleomycin hydrolase, thiol protease, C1 protease, hydrolase; 1.73A {Saccharomyces cerevisiae} PDB: 2e02_A 2e03_A 2dzy_A 1a6r_A 2e00_A 2dzz_A 3gcb_A 1gcb_A
Probab=100.00 E-value=4.1e-41 Score=328.87 Aligned_cols=209 Identities=19% Similarity=0.282 Sum_probs=151.0
Q ss_pred CCCeeeccccCccccccccccCCccchHHHHHHHHHHHHHHHH-hCCCCcCCh----------------hHHhhcCC---
Q psy4960 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALL-KKTLYPLSK----------------SQLVECDH--- 185 (341)
Q Consensus 126 lP~~~Dwr~~g~~~v~pV~dQg~cGsCwAfA~~~~le~~~~~~-~~~~~~lS~----------------q~l~dc~~--- 185 (341)
.|..|+++... .++||+|||+||+|||||++++||+.++++ ++..+.||+ |+|+||+.
T Consensus 53 ~~~~F~~~~~~--~vtpVknQg~cGsCWaFs~~~~lE~~~~~~~~~~~~~LSe~yl~~~dklEkan~flq~lvdc~~~~~ 130 (457)
T 2e01_A 53 DNRVFNTVVST--DSTPVTNQKSSGRCWLFAATNQLRLNVLSELNLKEFELSQAYLFFYDKLEKANYFLDQIVSSADQDI 130 (457)
T ss_dssp CCCCCSEECC--------------CCHHHHHHHHHHHHHHHHHTTCSSCCBCHHHHHHHHHHHHHHHHHHHHHHTTTSCT
T ss_pred CCCceEEEecC--CccCcccCCCCccchhHHhHHHHHHHHHHHhCCCceeeCChhhhhhhHHHHHHHHHHHHHHhcCCcc
Confidence 57788888877 899999999999999999999999999998 788999999 78899975
Q ss_pred ---------CCCCCCCCcHHHHHHHHHHcCCCCCCCCCC-cCC------------------------------CCCc---
Q psy4960 186 ---------GNLNCNGGNIDVAFEYVKQYGLESQADYPY-RNK------------------------------ENIT--- 222 (341)
Q Consensus 186 ---------~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY-~~~------------------------------~~~~--- 222 (341)
.+.||+||....++.++.++||+++++||| ... ....
T Consensus 131 ~~r~v~~l~~~~gcdGG~~~~a~~~i~kyGivpe~~yP~~s~~s~ns~~~n~~L~~kLr~~a~~lR~~~~~~~~~~~~l~ 210 (457)
T 2e01_A 131 DSRLVQYLLAAPTEDGGQYSMFLNLVKKYGLIPKDLYGDLPYSTTASRKWNSLLTTKLREFAETLRTALKERSADDSIIV 210 (457)
T ss_dssp TSHHHHHHHHCTTCSCBCHHHHHHHHHHHCCCBGGGSCSCSHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHH
T ss_pred cchhhhhhccCCCCCCCCHHHHHHHHHHcCccchhhcCCcccCcccHHHHHHHHHHHHHHHHHHHHHHHhccCchhhhHH
Confidence 478999999999999999999999999999 310 0000
Q ss_pred ---------------------c-----cccc--------------cc----------------------c---cceeeec
Q psy4960 223 ---------------------F-----RCTY--------------EK----------------------E---KAKVFVQ 237 (341)
Q Consensus 223 ---------------------~-----~C~~--------------~~----------------------~---~~~~~i~ 237 (341)
| .+.. .+ . ...+.+.
T Consensus 211 ~~~~~~l~~iy~il~~~LG~pP~~~~~~F~~~~~dkd~~~~~~~~TP~~F~~~~v~~~~~dyV~l~n~p~~py~~~y~ve 290 (457)
T 2e01_A 211 TLREQMQREIFRLMSLFMDIPPVQPNEQFTWEYVDKDKKIHTIKSTPLEFASKYAKLDPSTPVSLINDPRHPYGKLIKID 290 (457)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCSSCTTSCEEEEEECTTSCEEEEEECHHHHHHHTTCCCTTSEEEEECCTTSCTTCEEEET
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCCCceEEEEEEcCCCCccCCCcChHHHHHHHcCCCchheEEEeecCCCccCeeEEEe
Confidence 0 0100 00 0 0001111
Q ss_pred -------c---ceeechHH-----HHHHHHhcCCeEEEEeccccccCCCCcccCCCC-----------------CCCCCC
Q psy4960 238 -------D---TWVTSGVD-----HMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDW-----------------ACNPHK 285 (341)
Q Consensus 238 -------~---~y~~~~~d-----ik~~l~~~gPv~v~~~~~~f~~y~~Gv~~~~~~-----------------~~~~~~ 285 (341)
+ .|.++|.| ++.+|..+|||.+++++..|.+|++||+..... .|....
T Consensus 291 ~~~N~~~g~~~~y~Nvp~d~l~~~~~~aL~~g~PV~~~~Dv~~~~~~~~GI~~~~~~~~~~fg~~~~m~KaeRl~~~~s~ 370 (457)
T 2e01_A 291 RLGNVLGGDAVIYLNVDNETLSKLVVKRLQNNKAVFFGSHTPKFMDKKTGVMDIELWNYPAIGYNLPQQKASRIRYHESL 370 (457)
T ss_dssp TCCSSTTCCCEEEEECCHHHHHHHHHHHHHTTCCEEEEECTTTTEETTTTEECTTSBCGGGGTCCCCCCHHHHHHTTSCC
T ss_pred ccCCeecCCceeEEEcCHHHHHHHHHHHHHhCCCEEEEEEcCHhHcccCceecccccchhhcCcccccCHHHhhccCCCC
Confidence 1 16667763 667889999999999996688899999975210 013446
Q ss_pred CCeEEEEEEEeec-CCe--eEEEEEcCCCCCCCCCcEEEEEeCCCcccccCceeEEee
Q psy4960 286 LDHAVAIVGYGEK-NGI--LTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLASV 340 (341)
Q Consensus 286 ~~Hav~iVGyg~~-~g~--~ywivkNSWG~~WG~~GY~~i~r~~n~Cgi~~~~~~~~~ 340 (341)
.+|||+|||||.+ +|+ +|||||||||++||++|||+|+|+ .++.+++.++|
T Consensus 371 ~~HAmlivGyg~d~~G~~p~yW~VkNSWG~~wG~~GY~~ms~~----wf~ey~~~ivV 424 (457)
T 2e01_A 371 MTAAMLITGCHVDETSKLPLRYRVENSWGKDSGKDGLYVMTQK----YFEEYCFQIVV 424 (457)
T ss_dssp CCEEEEEEEEEECTTTCCEEEEEEECSSCTTSTBTTEEEEEHH----HHHHHEEEEEE
T ss_pred CCeEEEEEEEEeccCCCccCEEEEEeCccCCcCCCceEEeehh----hHhhccEEEEe
Confidence 8999999999975 788 999999999999999999999986 57777777665
No 43
>3pw3_A Aminopeptidase C; bleomycin, cysteine proteinase fold, structural genomics, JO center for structural genomics, JCSG; HET: MSE; 2.23A {Parabacteroides distasonis}
Probab=100.00 E-value=6.2e-36 Score=286.40 Aligned_cols=186 Identities=18% Similarity=0.196 Sum_probs=140.3
Q ss_pred ccccccccCCccchHHHHHHHHHHHHHHHHhCCCCcCChhHHhhcCC------------CCCCCCCCcHHHHHHHHHHcC
Q psy4960 139 VLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH------------GNLNCNGGNIDVAFEYVKQYG 206 (341)
Q Consensus 139 ~v~pV~dQg~cGsCwAfA~~~~le~~~~~~~~~~~~lS~q~l~dc~~------------~~~gC~GG~~~~a~~~~~~~G 206 (341)
.++||||||+||||||||+++++|+.++++++..+.||+|+|++|+. .+.||+||....|+.|++++|
T Consensus 21 ~vtpVknQg~cGsCWaFSa~~~lE~~~~~k~~~~~~LSeq~Lvdcd~~ekan~~l~~~g~~~gcdGG~~~~a~~~i~k~G 100 (383)
T 3pw3_A 21 PITSVKNQNRAGTCWCYSSYSFLESELLRMGKGEYDLSEMFTVYNTYLDRADAAVRTHGDVSFSQGGSFYDALYGMETFG 100 (383)
T ss_dssp CCCCCCBCCBSSCHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHHHHHHHHHHTTTCSCCCSCCCHHHHHHHHHHTC
T ss_pred CCCCcccCCCCcHHHHHHhHHHHHHHHHHHcCCCCccChHHHHhhchhhhhhhhhhhccCCCCCCCCCHHHHHHHHHHcC
Confidence 67999999999999999999999999999999999999999999973 257999999999999999999
Q ss_pred CCCCCCCC------CcCCC--------------------CC-------c------------------------------c
Q psy4960 207 LESQADYP------YRNKE--------------------NI-------T------------------------------F 223 (341)
Q Consensus 207 i~~e~~yP------Y~~~~--------------------~~-------~------------------------------~ 223 (341)
|+++++|| +.... .. . |
T Consensus 101 ivpe~~YP~~~~~~~~s~n~~~m~~~L~~~Lr~~a~~~~r~l~~~~~~~~~~~~~i~~il~~~LG~pP~~F~~~gk~~TP 180 (383)
T 3pw3_A 101 LVPEEEMRPGMMYADTLSNHTELSALTDAMVAAIAKGKLRKLQSDENNAMLWKKAVAAVHQIYLGVPPEKFTYKGKEYTP 180 (383)
T ss_dssp CCBGGGSCTTGGGTCSSCBCHHHHHHHHHHHHHHHSSCCSSCCBCTTCCBHHHHHHHHHHHHHHCCCCSSEEETTEEECH
T ss_pred cCcHHhCCCCCCCCccchhHHHHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHhCCCCceEEecCCCcCH
Confidence 99999999 21100 00 0 0
Q ss_pred -------cccc--------ccc---cceeee-------ccceeechHH-----HHHHHHhcCCeEEEEec-cccccCCCC
Q psy4960 224 -------RCTY--------EKE---KAKVFV-------QDTWVTSGVD-----HMMHLLQSGPIGVYLNH-RLIESYDGN 272 (341)
Q Consensus 224 -------~C~~--------~~~---~~~~~i-------~~~y~~~~~d-----ik~~l~~~gPv~v~~~~-~~f~~y~~G 272 (341)
.+.. .+. ...+.+ .+.|.++|.| +..+|..+.||..+-+| +.+.. +.|
T Consensus 181 ~~F~~~v~~~~~dyV~l~n~p~~py~~~y~ve~~~N~~~g~~~Nvp~d~l~~~~~~~Lk~G~~V~fg~DV~~~~f~-~~G 259 (383)
T 3pw3_A 181 KSFFESTGLKASDYVSLTSYTHHPFYTQFPLEIQDNWRHGMSYNLPLDEFMEVFDNAINTGYTIAWGSDVSESGFT-RDG 259 (383)
T ss_dssp HHHHHHHTCCGGGEEEEECCSSSCTTCEEECCCTTCTTCCEEEECCHHHHHHHHHHHHHTTCCEEEEEECCSTTBC-TTS
T ss_pred HHHHHHhCCCccceEEEeeCCCCccCceEEEecCCCccCCccCCcCHHHHHHHHHHHHHcCCcEEEEcccCccccC-CCc
Confidence 0000 000 011111 1225667763 77888889999999999 43333 889
Q ss_pred cccCCCC-------------------------------------------CCCCCCCCeEEEEEEEee-cCCeeEEEEEc
Q psy4960 273 PIRRNDW-------------------------------------------ACNPHKLDHAVAIVGYGE-KNGILTWIVRN 308 (341)
Q Consensus 273 v~~~~~~-------------------------------------------~~~~~~~~Hav~iVGyg~-~~g~~ywivkN 308 (341)
|...++. +...+..+|||+|||||. ++|++||||||
T Consensus 260 i~~~~~~~~~~~~~g~~~~~~~~~~kaer~~~~~~~~e~~~tk~~R~~~~d~~~t~~~Ha~~ivG~~~d~~g~~yw~vkN 339 (383)
T 3pw3_A 260 VAVMPDDEKVQELSGSDMAHWLKLKPEEKKLNTKPQPQKWCTQAERQLAYDNYETTDDHGMQIYGIAKDQEGNEYYMVKN 339 (383)
T ss_dssp EECCBCHHHHHHHSSCCHHHHHTSCHHHHCTTTSCCCBCCCCHHHHHHHHHTTSSCCEEEEEEEEEEECTTCCEEEEEEC
T ss_pred eeeCcchhhHHHhcCcchhhhccCCHHHhhhccCCCcccCCCHHHHHHHhhhccCcCCeEEEEEEEEEcCCCceEEEEEe
Confidence 8743110 001234689999999996 67899999999
Q ss_pred CCCCCCCCCcEEEEEeC
Q psy4960 309 SWGDIGPDHGYFQIERG 325 (341)
Q Consensus 309 SWG~~WG~~GY~~i~r~ 325 (341)
|||++||++||++|+++
T Consensus 340 SWg~~~g~~Gy~~m~~~ 356 (383)
T 3pw3_A 340 SWGTNSKYNGIWYASKA 356 (383)
T ss_dssp SBCSCSTTTTEEEEEHH
T ss_pred CCCCCCCcCCeEEecHH
Confidence 99999999999999874
No 44
>3f75_P Toxopain-2, cathepsin L propeptide; medical structural genomics of pathogenic protozoa, MSGPP, C protease, parasite, protozoa, hydrolase; 1.99A {Toxoplasma gondii}
Probab=99.53 E-value=1.6e-14 Score=114.20 Aligned_cols=63 Identities=21% Similarity=0.356 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHhhh------hcc--ccccCCCCCHHHHHHh-ccccC
Q psy4960 37 IKQVDAFKTYIVKWNRTYTDDNEIKTRFEYFKQDGKETD------EYY--GTSGSSDRSPQEILQR-TGLRL 99 (341)
Q Consensus 37 ~~~~~~f~~f~~~~~K~Y~~~~e~~~R~~iF~~n~~~I~------~~y--g~N~fsD~t~eE~~~~-l~~~~ 99 (341)
..+...|++|+++|+|.|.+.+|+..|+.||++|++.|+ .+| |+|+|+|||.+||+++ +|.+.
T Consensus 19 ~~~~~~F~~wk~~~~K~Y~~~~E~~~R~~iF~~Nl~~I~~hN~~~~sy~lglN~FaDLT~eEF~~~~lg~~~ 90 (106)
T 3f75_P 19 AHFQDAFSSFQAMYAKSYATEEEKQRRYAIFKNNLVYIHTHNQQGYSYSLKMNHFGDLSRDEFRRKYLGFKK 90 (106)
T ss_dssp HHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHTSCCSEEECCCTTTTCCHHHHHHHSCCBCC
T ss_pred HHHHHHHHHHHHHhCCcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCeeeCCcccccCCHHHHHHHHcCCCC
Confidence 345789999999999999998899999999999999998 466 9999999999999987 66544
No 45
>2l95_A Crammer, LP06209P; cysteine proteinase inhibitor, intrinsic disorder P like protein, hydrolase; NMR {Drosophila melanogaster}
Probab=99.46 E-value=4.6e-14 Score=106.31 Aligned_cols=57 Identities=16% Similarity=0.459 Sum_probs=50.3
Q ss_pred HHHHHHHHHHhCCccCChHHHHHHHHHHHHHHHhhh----------hcc--ccccCCCCCHHHHHHh-cccc
Q psy4960 40 VDAFKTYIVKWNRTYTDDNEIKTRFEYFKQDGKETD----------EYY--GTSGSSDRSPQEILQR-TGLR 98 (341)
Q Consensus 40 ~~~f~~f~~~~~K~Y~~~~e~~~R~~iF~~n~~~I~----------~~y--g~N~fsD~t~eE~~~~-l~~~ 98 (341)
...|++|+.+|+|.|.+.+|+..| .||++|++.|+ .+| |+|+|+|||++|| ++ +|.+
T Consensus 7 ~~~f~~~k~~~~K~Y~~~~E~~~R-~iF~~N~~~I~~hN~~~~~g~~sy~lg~N~FaDlT~eEf-~~~~g~~ 76 (80)
T 2l95_A 7 DEEWVEYKSKFDKNYEAEEDLMRR-RIYAESKARIEEHNRKFEKGEVTWKMGINHLADLTPEEF-AQRSGKK 76 (80)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHH-HHHHHHHHHHHHHHTTGGGTSCCCCCCCCGGGTSSHHHH-HHHHTSC
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHH-HHHHHHHHHHHHHHHHhccCCCCeEecCcccccCCHHHH-HHHhCCC
Confidence 468999999999999988888999 99999999998 246 9999999999999 65 6544
No 46
>1pxv_A Cysteine protease; hydrolase; 1.80A {Staphylococcus aureus} SCOP: d.3.1.1 PDB: 1y4h_A
Probab=97.61 E-value=0.0014 Score=55.34 Aligned_cols=131 Identities=18% Similarity=0.156 Sum_probs=91.4
Q ss_pred cccCCccchHHHHHHHHHHHHHHHH--------hCCCCcCChhHHhhcCCCCCCCCCCcHHHHHHHHHHcCCCCCCCCCC
Q psy4960 144 ESQGRCGSCWAFATTAILESQVALL--------KKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVKQYGLESQADYPY 215 (341)
Q Consensus 144 ~dQg~cGsCwAfA~~~~le~~~~~~--------~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY 215 (341)
..||.-+=|-+|+.+++|.+..... +.-...+|+++|.++ |..+...++|++..|-..
T Consensus 25 ETQg~~~WCa~Y~~aAilN~~~nt~~~nA~~iMr~~yPN~s~~~l~~t--------~~~~~q~Iky~~s~G~~~------ 90 (183)
T 1pxv_A 25 EQQFDNSWAAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPNC--------ATFPNQMIEYGKSQGRDI------ 90 (183)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHHTCSCCCHHHHHHHHSTTSCTTTGGGC--------CBCHHHHHHHHHHTTCCC------
T ss_pred eccCcCchHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCChhHHhhc--------CCCHHHHHHHHHHcCcCh------
Confidence 3699999999999999887765211 112567888888773 678999999998655221
Q ss_pred cCCCCCccccccccccceeeeccceeechHH-HHHHHHhcCCeEEEEeccccccCCCCcccCCCCCCCCCCCCeEEEEEE
Q psy4960 216 RNKENITFRCTYEKEKAKVFVQDTWVTSGVD-HMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVG 294 (341)
Q Consensus 216 ~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~d-ik~~l~~~gPv~v~~~~~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVG 294 (341)
.+..+ .+..| +++.+.++.|+.+... ++... .+....+||++|||
T Consensus 91 -----------------~~~nr----~ls~neV~~~i~~Nk~I~v~~~---------~v~e~----~~~~~~gHA~av~G 136 (183)
T 1pxv_A 91 -----------------HYQEG----VPSYNQVDQLTKDNVGIMILAQ---------SVSQN----PNDPHLGHALAVVG 136 (183)
T ss_dssp -----------------EEEES----CCCHHHHHHHHHTTCCEEEEEE---------CCCSS----TTSCCCEEEEEEEE
T ss_pred -----------------hHhcC----CCCHHHHHHHHhcCCcEEEEcc---------ccccC----CCCccCceeEEEEe
Confidence 00000 12224 9999999999998875 33222 11235799999999
Q ss_pred EeecCCeeEEEEEcCCCCCCCCCcEEEEEeCCC
Q psy4960 295 YGEKNGILTWIVRNSWGDIGPDHGYFQIERGAN 327 (341)
Q Consensus 295 yg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~n 327 (341)
|-.-++.++.+|=|-|-. |++-++-+.+
T Consensus 137 ya~~~~~~~y~~WNPW~~-----~~~~~~a~S~ 164 (183)
T 1pxv_A 137 NAKINDQEKLIYWNPWDT-----ELSIQDADSS 164 (183)
T ss_dssp EEEETTEEEEEEECTTCS-----SCEEEETTCC
T ss_pred eeecCCCeEEEEeCCccC-----CcEeecCCCC
Confidence 998779999999999843 7777765543
No 47
>1x9y_A Cysteine proteinase; half-barrel, barrel-sandwich-hybrid, hydrolase; 2.50A {Staphylococcus aureus} SCOP: d.3.1.1 d.17.1.4
Probab=97.41 E-value=0.0019 Score=59.95 Aligned_cols=130 Identities=18% Similarity=0.135 Sum_probs=88.0
Q ss_pred cccCCccchHHHHHHHHHHHHHHHH--------hCCCCcCChhHHhhcCCCCCCCCCCcHHHHHHHHHHcCCCCCCCCCC
Q psy4960 144 ESQGRCGSCWAFATTAILESQVALL--------KKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVKQYGLESQADYPY 215 (341)
Q Consensus 144 ~dQg~cGsCwAfA~~~~le~~~~~~--------~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY 215 (341)
..||.-+-|-+||.+++|.+..... +.-...+|+++|.+ .|..+...++|++.+|...
T Consensus 201 ETQg~~pWCa~Ya~aailN~~~~t~~~nA~~iMr~~yPN~S~~~l~~--------ts~~~~q~Iky~qsyG~~~------ 266 (367)
T 1x9y_A 201 EQQFDNSWCAGFSMAALLNATKNTDTYNAHDIMRTLYPEVSEQDLPN--------CATFPNQMIEYGKSQGRDI------ 266 (367)
T ss_dssp CCCSSSSCHHHHHHHHHHHHHTTCSCCCHHHHHHHHCTTSCTTTGGG--------CCCCHHHHHHHHHHTTEEE------
T ss_pred eccCCCchHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCChhHHhh--------cCCCHHHHHHHHHHhCcch------
Confidence 4699999999999999887654211 11256788888877 3678899999997554211
Q ss_pred cCCCCCccccccccccceeeeccceeechHH-HHHHHHhcCCeEEEEeccccccCCCCcccCCCCCCCCCCCCeEEEEEE
Q psy4960 216 RNKENITFRCTYEKEKAKVFVQDTWVTSGVD-HMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVG 294 (341)
Q Consensus 216 ~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~d-ik~~l~~~gPv~v~~~~~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVG 294 (341)
.+. -..+..| +++.+..+.|+.|.+.. +... .+....+|||+|||
T Consensus 267 -----------------~~~----n~~ls~deVk~~id~Nk~I~v~~~~---------v~~~----~n~~~~gHAlavvG 312 (367)
T 1x9y_A 267 -----------------HYQ----EGVPSYNQVDQLTKDNVGIMILAQS---------VSQN----PNDPHLGHALAVVG 312 (367)
T ss_dssp -----------------EEE----ESCCCHHHHHHHHHTTCCEEEEEEE---------TTSC----SSSCCCSEEEEEEE
T ss_pred -----------------hhh----cCCCCHHHHHHHHhcCCcEEEEccc---------cccC----CCCccCceeEEEEe
Confidence 000 1112234 88999999999998763 1111 11235799999999
Q ss_pred EeecCCeeEEEEEcCCCCCCCCCcEEEEEeCC
Q psy4960 295 YGEKNGILTWIVRNSWGDIGPDHGYFQIERGA 326 (341)
Q Consensus 295 yg~~~g~~ywivkNSWG~~WG~~GY~~i~r~~ 326 (341)
|-..++.+|.++-|=|-. +++-+.-..
T Consensus 313 yA~~~~~~~y~~WNPW~~-----~~~~~sa~S 339 (367)
T 1x9y_A 313 NAKINDQEKLIYWNPWDT-----ELSIQDADS 339 (367)
T ss_dssp EEEETTEEEEEEECTTCS-----SCEEEETTC
T ss_pred ccccCCCcEEEEecCccC-----CceeecCCC
Confidence 987668999999998843 366555443
No 48
>1cv8_A Staphopain; cysteine protease, thiol protease, papain family; HET: E64; 1.75A {Staphylococcus aureus} SCOP: d.3.1.1
Probab=97.10 E-value=0.0077 Score=50.61 Aligned_cols=119 Identities=19% Similarity=0.209 Sum_probs=83.0
Q ss_pred cccCCccchHHHHHHHHHHHHHHHH--------hCCCCcCChhHHhhcCCCCCCCCCCcHHHHHHHHHHcCCCCCCCCCC
Q psy4960 144 ESQGRCGSCWAFATTAILESQVALL--------KKTLYPLSKSQLVECDHGNLNCNGGNIDVAFEYVKQYGLESQADYPY 215 (341)
Q Consensus 144 ~dQg~cGsCwAfA~~~~le~~~~~~--------~~~~~~lS~q~l~dc~~~~~gC~GG~~~~a~~~~~~~Gi~~e~~yPY 215 (341)
..||.-+=|-+||.+++|.+..... +.....+|+++|..+ |..+...++|+++.|-..
T Consensus 16 ETQg~~pWCa~Ya~aailN~~~~~~~~~A~~imr~~yPn~S~~~l~~~--------~~t~~e~iky~~s~g~~~------ 81 (174)
T 1cv8_A 16 ETQGNNGWCAGYTMSALLNATYNTNKYHAEAVMRFLHPNLQGQQFQFT--------GLTPREMIYFGQTQGRSP------ 81 (174)
T ss_dssp CCCCSSSCHHHHHHHHHHHHHHTCCCCCHHHHHHHHCSSCCHHHHHHC--------CCCHHHHHHHHHHTTCCC------
T ss_pred eccCCCchHHHHHHHHHHHhhhccCcCCHHHHHHHHCCCCCHHHHhhc--------CCCHHHHHHHHHHcCCCh------
Confidence 3599999999999999988765221 122578999999854 567889999987664200
Q ss_pred cCCCCCccccccccccceeeeccceeechHH-HHHHHHhcCCeEEEEeccccccCCCCcccCCCCCCCCCCCCeEEEEEE
Q psy4960 216 RNKENITFRCTYEKEKAKVFVQDTWVTSGVD-HMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVG 294 (341)
Q Consensus 216 ~~~~~~~~~C~~~~~~~~~~i~~~y~~~~~d-ik~~l~~~gPv~v~~~~~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVG 294 (341)
.+.. ..+..| +++++.++-|+.+..+- | .. -.....+|||+|||
T Consensus 82 -------------------~~~n--~~ls~~eV~~~~~~nk~i~i~~~~---------v-e~----~~~~~~gHAlav~G 126 (174)
T 1cv8_A 82 -------------------QLLN--RMTTYNEVDNLTKNNKGIAILGSR---------V-ES----RNGMHAGHAMAVVG 126 (174)
T ss_dssp -------------------EEES--SCCCHHHHHHHHHTTCCEEEEEEE---------S-SC----BTTBCCEEEEEEEE
T ss_pred -------------------hhhc--CCCCHHHHHHHHhcCCceEEEccc---------c-cC----CCCCCCceeEEEEe
Confidence 0111 012224 89999999999887752 1 01 01125799999999
Q ss_pred Eee-cCCeeEEEEEcCCC
Q psy4960 295 YGE-KNGILTWIVRNSWG 311 (341)
Q Consensus 295 yg~-~~g~~ywivkNSWG 311 (341)
|-. .+|.+|.++=|-|-
T Consensus 127 y~~~~ng~~~y~~WNPW~ 144 (174)
T 1cv8_A 127 NAKLNNGQEVIIIWNPWD 144 (174)
T ss_dssp EEEETTSCEEEEEECTTC
T ss_pred eeeecCCceEEEEeCCcc
Confidence 996 57889999999984
No 49
>3erv_A Putative C39-like peptidase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.10A {Bacillus anthracis}
Probab=71.09 E-value=6.9 Score=34.51 Aligned_cols=54 Identities=13% Similarity=0.310 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCeEEEEec--c-----ccccC--CCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCC
Q psy4960 246 DHMMHLLQSGPIGVYLNH--R-----LIESY--DGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSW 310 (341)
Q Consensus 246 dik~~l~~~gPv~v~~~~--~-----~f~~y--~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSW 310 (341)
+|+..|.++.||+|.+.. . .|..+ .+|-... ...+|+|+|+||+. . ..+|-..+
T Consensus 134 ~L~~~I~~G~PVIv~~t~~~~p~~~~~~~~W~~~~G~~~~-------~~~~H~VVl~GYd~---~-~vyi~DP~ 196 (236)
T 3erv_A 134 ELYKSVKAGQPVVIITNATFAPLDEDEFTTWETNNGDVSI-------TYNEHCVVLIGYDQ---E-SVYIRDPL 196 (236)
T ss_dssp HHHHHHHTTCCEEEEEETTSSCCCGGGCEEEEETTEEEEE-------CTTEEEEEEEEECS---S-EEEEECTT
T ss_pred HHHHHHHCCCeEEEEEeCCcccccccccceeecCCCceee-------ccCCeEEEEEEEeC---C-EEEEECCC
Confidence 399999999999997754 1 12111 1232211 13689999999983 2 44455544
No 50
>3bb7_A Interpain A; cysteine protease, zymogen activation, bacterial odontopatho hydrolase; 1.50A {Prevotella intermedia} PDB: 3bba_A
Probab=44.12 E-value=30 Score=31.84 Aligned_cols=58 Identities=21% Similarity=0.200 Sum_probs=37.4
Q ss_pred HHHHHHhcCCeEEEEeccccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEe
Q psy4960 247 HMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIER 324 (341)
Q Consensus 247 ik~~l~~~gPv~v~~~~~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r 324 (341)
|++.|.++.||...-.-... . ...++||.+|=||.. .+||=|==.||-. .+|||.+.-
T Consensus 241 i~~eL~~~rPV~~~G~~~~~------~---------~~~~GHafV~DGY~~---~~~~H~NwGWgG~--~nGyy~l~~ 298 (321)
T 3bb7_A 241 VFSELTKGHPLIYGGVSPGS------M---------GQDAGHAFVIDGYNK---AGLVSVNWGWNGD--VDGYYKIDL 298 (321)
T ss_dssp HHHHHHTTCCEEEEEC----------------------CCCEEEEEEEECT---TSCEEEECSSTTT--TCEEECCTT
T ss_pred HHHHHHhCCCEEEEEecCCC------C---------CCCCceEEEEccccC---CCeEEEecCCCCC--CCceEeccC
Confidence 89999999998775322111 0 125799999999973 3566665455421 389999863
No 51
>1dki_A Pyrogenic exotoxin B zymogen; cysteine protease, papain-like; 1.60A {Streptococcus pyogenes} SCOP: d.3.1.1 PDB: 1pvj_A*
Probab=43.30 E-value=36 Score=31.94 Aligned_cols=53 Identities=25% Similarity=0.359 Sum_probs=36.8
Q ss_pred HHHHHHhcCCeEEEEeccccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCCCCcEEEEEe
Q psy4960 247 HMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGPDHGYFQIER 324 (341)
Q Consensus 247 ik~~l~~~gPv~v~~~~~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG~~GY~~i~r 324 (341)
|++.|.++.||...-. .. .++||.+|=||. ..+||=|==.||-. .+|||.+.-
T Consensus 292 i~~eL~~~rPV~~~G~------------~~--------~gGHAfV~DGy~---~~~~~H~NwGWgG~--~nGyy~l~~ 344 (371)
T 1dki_A 292 IDKELSQNQPVYYQGV------------GK--------VGGHAFVIDGAD---GRNFYHVNWGWGGV--SDGFFRLDA 344 (371)
T ss_dssp HHHHHHTTCCEEEEEE------------ET--------TEEEEEEEEEEC---SSSEEEEECSSTTT--TCEEEESCC
T ss_pred HHHHHHcCCCEEEEee------------cC--------CCceEEEECccc---CCCeEEEEeCcCCC--CCcceeccC
Confidence 8899999999976421 11 279999999997 34565554444421 589999863
No 52
>4d8b_A Streptopain; papain fold, cysteine protease, secreted, hydrolase; 1.06A {Streptococcus pyogenes} PDB: 4d8e_A* 4d8i_A* 2uzj_A* 2jtc_A
Probab=30.39 E-value=57 Score=29.00 Aligned_cols=51 Identities=24% Similarity=0.275 Sum_probs=37.3
Q ss_pred HHHHHHhcCCeEEEEeccccccCCCCcccCCCCCCCCCCCCeEEEEEEEeecCCeeEEEEEcCCCCCCC--CCcEEEEEe
Q psy4960 247 HMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWGDIGP--DHGYFQIER 324 (341)
Q Consensus 247 ik~~l~~~gPv~v~~~~~~f~~y~~Gv~~~~~~~~~~~~~~Hav~iVGyg~~~g~~ywivkNSWG~~WG--~~GY~~i~r 324 (341)
|++.|..+.||.+.-. . ..++||.+|=||.. .+|+-|= || || .+|||.+..
T Consensus 174 I~~eL~~grPV~~~G~-------------~-------~~gGHAwViDGY~~---~~~~H~N--wG--WgG~~nGYy~l~~ 226 (261)
T 4d8b_A 174 IDKELSQNQPVYYQGV-------------G-------KVGGHAFVIDGADG---RNFYHVN--WG--WGGVSDGFFRLDA 226 (261)
T ss_dssp HHHHHHTTCCEEEEEE-------------E-------TTEEEEEEEEEEES---SSCEEEE--CS--STTTTCEEECTTC
T ss_pred HHHHHHcCCCEEEEee-------------c-------CCCceEEEEccccc---CCEEEEE--cC--CCCCCCceeeccc
Confidence 8999999999988742 0 14799999999973 3455554 55 44 589999853
No 53
>1ziv_A Calpain 9; cysteine protease, papain, calcium-dependent, thiol protease, structural genomics consortium, SGC, hydrolase; 2.31A {Homo sapiens} SCOP: d.3.1.3 PDB: 2p0r_A*
Probab=28.47 E-value=60 Score=29.89 Aligned_cols=28 Identities=29% Similarity=0.507 Sum_probs=22.7
Q ss_pred CCCeEEEEEEEeec----CCeeEEEEEcCCCC
Q psy4960 285 KLDHAVAIVGYGEK----NGILTWIVRNSWGD 312 (341)
Q Consensus 285 ~~~Hav~iVGyg~~----~g~~ywivkNSWG~ 312 (341)
..+||-.|++.-.. ++...-.|||-||.
T Consensus 243 v~~HaYsVl~v~~v~~~~~~~~Lv~LrNPWg~ 274 (339)
T 1ziv_A 243 IKGHAYSVTGIDQVSFRGQRIELIRIRNPWGQ 274 (339)
T ss_dssp BTTCCEEEEEEEEEEETTEEEEEEEEECCSSC
T ss_pred ccCeeEEEeEEEEEecCCCceEEEEecCCCCC
Confidence 47899999999742 35678899999996
No 54
>2r9f_A Calpain-1 catalytic subunit; protease, peptidase, inhibitor, alpha-ketoamide, hydrolase, thiol protease; HET: K2Z; 1.60A {Rattus norvegicus} SCOP: d.3.1.3 PDB: 1tlo_A* 2g8e_A* 1tl9_A* 2nqg_A* 2nqi_A* 2r9c_A* 2g8j_A* 1kxr_A 2ary_A 1zcm_A* 1mdw_A
Probab=26.74 E-value=71 Score=29.41 Aligned_cols=38 Identities=21% Similarity=0.319 Sum_probs=0.0
Q ss_pred CCeEEEEEEEee----cCCeeEEEEEcCCC-CCCC-------------------------CCcEEEEE
Q psy4960 286 LDHAVAIVGYGE----KNGILTWIVRNSWG-DIGP-------------------------DHGYFQIE 323 (341)
Q Consensus 286 ~~Hav~iVGyg~----~~g~~ywivkNSWG-~~WG-------------------------~~GY~~i~ 323 (341)
.+||-.|++.-. ..+...-.|||-|| ..|- ++|-|||+
T Consensus 245 ~~HaYsVl~v~~v~~~~~~~~Lv~LrNPWg~~eW~G~wsd~s~~W~~~~~~~~~~l~~~~~dG~FWMs 312 (339)
T 2r9f_A 245 RGHAYSVTDAKQVTYQGQRVNLIRMRNPWGEVEWKGPWSDNSYEWNKVDPYEREQLRVKMEDGEFWMS 312 (339)
T ss_dssp TTCCEEEEEEEEEEETTEEEEEEEEECTTSCCCCCSTTSTTCGGGGGSCHHHHHHHCCCCCSSEEEEE
T ss_pred CCceEEEeEEEEEecCCCceEEEEEeCCCCCccccCCCCcCCccccccCHHHHHHhCCCCCCCEEEEE
No 55
>1th5_A NIFU1; iron-sulfur cluster binding, structural genomics, program for RICE genome research, unknown function; NMR {Oryza sativa} SCOP: d.52.8.1
Probab=23.32 E-value=32 Score=24.43 Aligned_cols=27 Identities=7% Similarity=0.038 Sum_probs=20.4
Q ss_pred cccccccCCccchHHHHHHHHHHHHHHHH
Q psy4960 140 LNPVESQGRCGSCWAFATTAILESQVALL 168 (341)
Q Consensus 140 v~pV~dQg~cGsCwAfA~~~~le~~~~~~ 168 (341)
+--|+=||.|++| ......+|..+...
T Consensus 37 ~V~v~l~GaC~gc--~Tlk~gIe~~L~~~ 63 (74)
T 1th5_A 37 IVKVRLTGPAAVV--RTVRIAVSKKLREK 63 (74)
T ss_dssp EEEECCCSSSSSS--SSHHHHHHHHHHHH
T ss_pred EEEEEEecCCcch--HHHHHHHHHHHHHH
Confidence 4568899999999 44556888887654
No 56
>2nqa_A Calpain 8; calpain, calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC; HET: AR7; 2.20A {Homo sapiens}
Probab=22.52 E-value=91 Score=28.45 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=0.0
Q ss_pred CCeEEEEEEEeec----CCeeEEEEEcCCC-CCCC-------------------------CCcEEEEE
Q psy4960 286 LDHAVAIVGYGEK----NGILTWIVRNSWG-DIGP-------------------------DHGYFQIE 323 (341)
Q Consensus 286 ~~Hav~iVGyg~~----~g~~ywivkNSWG-~~WG-------------------------~~GY~~i~ 323 (341)
.+||-.|++.... .+...-.|||-|| ..|- ++|-|||+
T Consensus 240 ~~HaYsVl~v~~v~~~~~~~~lv~lrNPWg~~eW~G~wsd~s~~W~~~~~~~~~~l~~~~~dG~FWMs 307 (326)
T 2nqa_A 240 KSHAYSVTGVEEVNFQGHPEKLIRLRNPWGEVEWSGAWSDDAPEWNHIDPRRKEELDKKVEDGEFWMS 307 (326)
T ss_dssp SSCCEEEEEEEEEEETTEEEEEEEEECTTCC-CCCSTTSTTCGGGGGSCHHHHHHHCCCCCSSEEEEE
T ss_pred cCceEEEEEEEEEecCCCceEEEEecCCCcCccccCCCCCCCccccccCHHHHHHhCCCCCCCEEEEE
Done!