RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy4960
(341 letters)
>gnl|CDD|239068 cd02248, Peptidase_C1A, Peptidase C1A subfamily (MEROPS database
nomenclature); composed of cysteine peptidases (CPs)
similar to papain, including the mammalian CPs
(cathepsins B, C, F, H, L, K, O, S, V, X and W). Papain
is an endopeptidase with specific substrate preferences,
primarily for bulky hydrophobic or aromatic residues at
the S2 subsite, a hydrophobic pocket in papain that
accommodates the P2 sidechain of the substrate (the
second residue away from the scissile bond). Most
members of the papain subfamily are endopeptidases. Some
exceptions to this rule can be explained by specific
details of the catalytic domains like the occluding loop
in cathepsin B which confers an additional
carboxydipeptidyl activity and the mini-chain of
cathepsin H resulting in an N-terminal exopeptidase
activity. Papain-like CPs have different functions in
various organisms. Plant CPs are used to mobilize
storage proteins in seeds. Parasitic CPs act
extracellularly to help invade tissues and cells, to
hatch or to evade the host immune system. Mammalian CPs
are primarily lysosomal enzymes with the exception of
cathepsin W, which is retained in the endoplasmic
reticulum. They are responsible for protein degradation
in the lysosome. Papain-like CPs are synthesized as
inactive proenzymes with N-terminal propeptide regions,
which are removed upon activation. In addition to its
inhibitory role, the propeptide is required for proper
folding of the newly synthesized enzyme and its
stabilization in denaturing pH conditions. Residues
within the propeptide region also play a role in the
transport of the proenzyme to lysosomes or acidified
vesicles. Also included in this subfamily are proteins
classified as non-peptidase homologs, which lack
peptidase activity or have missing active site residues.
Length = 210
Score = 202 bits (515), Expect = 3e-64
Identities = 90/215 (41%), Positives = 119/215 (55%), Gaps = 12/215 (5%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECD-H 185
P+S+DWR + + PV+ QG CGSCWAF+T LE A+ L LS+ QLV+C
Sbjct: 1 PESVDWR--EKGAVTPVKDQGSCGSCWAFSTVGALEGAYAIKTGKLVSLSEQQLVDCSTS 58
Query: 186 GNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQD-TWVTSG 244
GN CNGGN D AFEYVK GL S++DYPY K+ C Y K + + V G
Sbjct: 59 GNNGCNGGNPDNAFEYVKNGGLASESDYPYTGKDG---TCKYNSSKVGAKITGYSNVPPG 115
Query: 245 VDH--MMHLLQSGPIGVYLN-HRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGI 301
+ L GP+ V ++ + Y G + C+ L+HAV +VGYG +NG+
Sbjct: 116 DEEALKAALANYGPVSVAIDASSSFQFYKGGIY--SGPCCSNTNLNHAVLLVGYGTENGV 173
Query: 302 LTWIVRNSWGDIGPDHGYFQIERGANACGIESYAY 336
WIV+NSWG + GY +I RG+N CGI SYA
Sbjct: 174 DYWIVKNSWGTSWGEKGYIRIARGSNLCGIASYAS 208
>gnl|CDD|215726 pfam00112, Peptidase_C1, Papain family cysteine protease.
Length = 213
Score = 192 bits (490), Expect = 2e-60
Identities = 84/218 (38%), Positives = 120/218 (55%), Gaps = 15/218 (6%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185
LP+S DWR+ + PV+ QG+CGSCWAF+ LE + + L LS+ QLV+CD
Sbjct: 1 LPESFDWREKGA--VTPVKDQGQCGSCWAFSAVGALEGRYCIKTGKLVSLSEQQLVDCDT 58
Query: 186 GNLNCNGGNIDVAFEYVKQ-YGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSG 244
GN CNGG D AFEY+K+ G+ +++DYPY + C ++K +K +
Sbjct: 59 GNNGCNGGLPDNAFEYIKKNGGIVTESDYPYTAHDG---TCKFKKSNSKYAKIKGYGDVP 115
Query: 245 VDH----MMHLLQSGPIGVYLN--HRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEK 298
+ L ++GP+ V ++ + Y C+ +LDHAV IVGYG +
Sbjct: 116 YNDEEALQAALAKNGPVSVAIDAYEDDFQLYKSGVY--KHTECSG-ELDHAVLIVGYGTE 172
Query: 299 NGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAY 336
NG+ WIV+NSWG ++GYF+I RG N CGI S A
Sbjct: 173 NGVPYWIVKNSWGTDWGENGYFRIARGVNECGIASEAS 210
>gnl|CDD|214761 smart00645, Pept_C1, Papain family cysteine protease.
Length = 175
Score = 158 bits (401), Expect = 2e-47
Identities = 80/216 (37%), Positives = 103/216 (47%), Gaps = 49/216 (22%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDH 185
LP+S DWR K + PV+ QG+CGSCWAF+ T LE + + L LS+ QLV+C
Sbjct: 1 LPESFDWR--KKGAVTPVKDQGQCGSCWAFSATGALEGRYCIKTGKLVSLSEQQLVDCSG 58
Query: 186 -GNLNCNGGNIDVAFEYVKQY-GLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTS 243
GN CNGG D AFEY+K+ GLE+++ YPY V +
Sbjct: 59 GGNCGCNGGLPDNAFEYIKKNGGLETESCYPY---------------TGSVAI------- 96
Query: 244 GVDHMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEK--NGI 301
G+Y + C LDHAV IVGYG + NG
Sbjct: 97 DASDFQFY--KS--GIY----------------DHPGCGSGTLDHAVLIVGYGTEVENGK 136
Query: 302 LTWIVRNSWGDIGPDHGYFQIERG-ANACGIESYAY 336
WIV+NSWG ++GYF+I RG N CGIE+
Sbjct: 137 DYWIVKNSWGTDWGENGYFRIARGKNNECGIEASVA 172
>gnl|CDD|240310 PTZ00200, PTZ00200, cysteine proteinase; Provisional.
Length = 448
Score = 152 bits (385), Expect = 3e-42
Identities = 96/328 (29%), Positives = 142/328 (43%), Gaps = 46/328 (14%)
Query: 43 FKTYIVKWNRTYTDDNEIKTRFEYFKQD-----GKETDEYY--GTSGSSDRSPQEI---- 91
F+ + K+NR + E RF F+ + + DE Y + SD + +E
Sbjct: 126 FEEFNKKYNRKHATHAERLNRFLTFRNNYLEVKSHKGDEPYSKEINKFSDLTEEEFRKLF 185
Query: 92 ------LQRTGLRLTGKEKERLEADRERVKKFLNERKKGPLP---------KSLDWRQSK 136
+ K R ++ +K L + K + LDWR +
Sbjct: 186 PVIKVPPKSNSTSHNNDFKARHVSNPTYLKN-LKKAKNTDEDVKDPSKITGEGLDWR--R 242
Query: 137 VKVLNPVESQGR-CGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLNCNGGNI 195
+ V+ QG CGSCWAF++ +ES + + LS+ +LV CD + C+GG
Sbjct: 243 ADAVTKVKDQGLNCGSCWAFSSVGSVESLYKIYRDKSVDLSEQELVNCDTKSQGCSGGYP 302
Query: 196 DVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVTSGVDHMMHLLQSG 255
D A EYVK GL S +D PY K+ +C K KV++ V G D + L
Sbjct: 303 DTALEYVKNKGLSSSSDVPYLAKDG---KCVVSSTK-KVYIDSYLVAKGKDVLNKSLVIS 358
Query: 256 PIGVYLN-HRLIESYDGNPIRRNDWACNPHKLDHAVAIV--GYGEKNGILTWIVRNSWG- 311
P VY+ R + Y + C L+HAV +V GY EK WI++NSWG
Sbjct: 359 PTVVYIAVSRELLKYKSGVY---NGECG-KSLNHAVLLVGEGYDEKTKKRYWIIKNSWGT 414
Query: 312 DIGPDHGYFQIER---GANACGIESYAY 336
D G + GY ++ER G + CGI +
Sbjct: 415 DWGEN-GYMRLERTNEGTDKCGILTVGL 441
>gnl|CDD|185513 PTZ00203, PTZ00203, cathepsin L protease; Provisional.
Length = 348
Score = 125 bits (316), Expect = 2e-33
Identities = 72/220 (32%), Positives = 111/220 (50%), Gaps = 12/220 (5%)
Query: 127 PKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHG 186
P ++DWR+ + PV++QG CGSCWAF+ +ESQ A+ L LS+ QLV CDH
Sbjct: 127 PDAVDWREKGA--VTPVKNQGACGSCWAFSAVGNIESQWAVAGHKLVRLSEQQLVSCDHV 184
Query: 187 NLNCNGGNIDVAFEYV--KQYG-LESQADYPYRNKENITFRCTYEKEKAKVFVQDTWVT- 242
+ C GG + AFE+V G + ++ YPY + C+ E A D +V+
Sbjct: 185 DNGCGGGLMLQAFEWVLRNMNGTVFTEKSYPYVSGNGDVPECSNSSELAPGARIDGYVSM 244
Query: 243 -SGVDHMMH-LLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNG 300
S M L ++GPI + ++ SY + +C +L+H V +VGY
Sbjct: 245 ESSERVMAAWLAKNGPISIAVDASSFMSYHSGVLT----SCIGEQLNHGVLLVGYNMTGE 300
Query: 301 ILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAYLASV 340
+ W+++NSWG+ + GY ++ G NAC + Y V
Sbjct: 301 VPYWVIKNSWGEDWGEKGYVRVTMGVNACLLTGYPVSVHV 340
>gnl|CDD|239111 cd02620, Peptidase_C1A_CathepsinB, Cathepsin B group; composed of
cathepsin B and similar proteins, including
tubulointerstitial nephritis antigen (TIN-Ag). Cathepsin
B is a lysosomal papain-like cysteine peptidase which is
expressed in all tissues and functions primarily as an
exopeptidase through its carboxydipeptidyl activity.
Together with other cathepsins, it is involved in the
degradation of proteins, proenzyme activation, Ag
processing, metabolism and apoptosis. Cathepsin B has
been implicated in a number of human diseases such as
cancer, rheumatoid arthritis, osteoporosis and
Alzheimer's disease. The unique carboxydipeptidyl
activity of cathepsin B is attributed to the presence of
an occluding loop in its active site which favors the
binding of the C-termini of substrate proteins. Some
members of this group do not possess the occluding loop.
TIN-Ag is an extracellular matrix basement protein which
was originally identified as a target Ag involved in
anti-tubular basement membrane antibody-mediated
interstitial nephritis. It plays a role in renal
tubulogenesis and is defective in hereditary
tubulointerstitial disorders. TIN-Ag is exclusively
expressed in kidney tissues. .
Length = 236
Score = 120 bits (303), Expect = 2e-32
Identities = 72/253 (28%), Positives = 103/253 (40%), Gaps = 62/253 (24%)
Query: 127 PKSLDWRQ--SKVKVLNPVESQGRCGSCWAFATTAILESQ--VALLKKTLYPLSKSQLVE 182
P+S D R+ + + QG CGSCWAF+ + + K LS L+
Sbjct: 1 PESFDAREKWPNCISIGEIRDQGNCGSCWAFSAVEAFSDRLCIQSNGKENVLLSAQDLLS 60
Query: 183 CDHG-NLNCNGGNIDVAFEYVKQYGLESQADYPY---------------RNKENITFRC- 225
C G CNGG D A++Y+ G+ + PY T +C
Sbjct: 61 CCSGCGDGCNGGYPDAAWKYLTTTGVVTGGCQPYTIPPCGHHPEGPPPCCGTPYCTPKCQ 120
Query: 226 -----TYEKEKAKVFVQDTWVTSGVDHMM-HLLQSGPI---------------GVYLNHR 264
TYE++K K V S +M ++ +GP+ GVY +
Sbjct: 121 DGCEKTYEEDKHKG-KSAYSVPSDETDIMKEIMTNGPVQAAFTVYEDFLYYKSGVYQHTS 179
Query: 265 LIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWG-DIGPDHGYFQIE 323
G HAV I+G+G +NG+ W+ NSWG D G ++GYF+I
Sbjct: 180 --GKQLGG---------------HAVKIIGWGVENGVPYWLAANSWGTDWG-ENGYFRIL 221
Query: 324 RGANACGIESYAY 336
RG+N CGIES
Sbjct: 222 RGSNECGIESEVV 234
>gnl|CDD|239112 cd02621, Peptidase_C1A_CathepsinC, Cathepsin C; also known as
Dipeptidyl Peptidase I (DPPI), an atypical papain-like
cysteine peptidase with chloride dependency and
dipeptidyl aminopeptidase activity, resulting from its
tetrameric structure which limits substrate access. Each
subunit of the tetramer is composed of three peptides:
the heavy and light chains, which together adopts the
papain fold and forms the catalytic domain; and the
residual propeptide region, which forms a beta barrel
and points towards the substrate's N-terminus. The
subunit composition is the result of the unique
characteristic of procathepsin C maturation involving
the cleavage of the catalytic domain and the
non-autocatalytic excision of an activation peptide
within its propeptide region. By removing N-terminal
dipeptide extensions, cathepsin C activates granule
serine peptidases (granzymes) involved in cell-mediated
apoptosis, inflammation and tissue remodelling.
Loss-of-function mutations in cathepsin C are associated
with Papillon-Lefevre and Haim-Munk syndromes, rare
diseases characterized by hyperkeratosis and early-onset
periodontitis. Cathepsin C is widely expressed in many
tissues with high levels in lung, kidney and placenta.
It is also highly expressed in cytotoxic lymphocytes and
mature myeloid cells.
Length = 243
Score = 117 bits (294), Expect = 5e-31
Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 31/239 (12%)
Query: 126 LPKSLDWRQ--SKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYP------LSK 177
LPKS DW + ++PV +QG CGSC+AFA+ LE+++ + P LS
Sbjct: 1 LPKSFDWGDVNNGFNYVSPVRNQGGCGSCYAFASVYALEARIMIASNKTDPLGQQPILSP 60
Query: 178 SQLVECDHGNLNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEK-EKAKVFV 236
++ C + C+GG + ++ + +G+ ++ +PY ++ C E + +
Sbjct: 61 QHVLSCSQYSQGCDGGFPFLVGKFAEDFGIVTEDYFPYTADDDRP--CKASPSECRRYYF 118
Query: 237 QDTW-------VTSGVDHMMHLLQSGPI--GVYLNHRLIESYDG--NPIRRNDWACNPHK 285
D T+ + + ++GPI + +G + ++ + +
Sbjct: 119 SDYNYVGGCYGCTNEDEMKWEIYRNGPIVVAFEVYSDFDFYKEGVYHHTDNDEVSDGDND 178
Query: 286 -------LDHAVAIVGYGE--KNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYA 335
+HAV +VG+GE G WIV+NSWG + GYF+I RG N CGIES A
Sbjct: 179 NFNPFELTNHAVLLVGWGEDEIKGEKYWIVKNSWGSSWGEKGYFKIRRGTNECGIESQA 237
>gnl|CDD|239110 cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database
nomenclature), also referred to as the papain family;
composed of two subfamilies of cysteine peptidases
(CPs), C1A (papain) and C1B (bleomycin hydrolase).
Papain-like enzymes are mostly endopeptidases with some
exceptions like cathepsins B, C, H and X, which are
exopeptidases. Papain-like CPs have different functions
in various organisms. Plant CPs are used to mobilize
storage proteins in seeds while mammalian CPs are
primarily lysosomal enzymes responsible for protein
degradation in the lysosome. Papain-like CPs are
synthesized as inactive proenzymes with N-terminal
propeptide regions, which are removed upon activation.
Bleomycin hydrolase (BH) is a CP that detoxifies
bleomycin by hydrolysis of an amide group. It acts as a
carboxypeptidase on its C-terminus to convert itself
into an aminopeptidase and peptide ligase. BH is found
in all tissues in mammals as well as in many other
eukaryotes. It forms a hexameric ring barrel structure
with the active sites imbedded in the central channel.
Some members of the C1 family are proteins classified as
non-peptidase homologs which lack peptidase activity or
have missing active site residues.
Length = 223
Score = 102 bits (255), Expect = 1e-25
Identities = 58/226 (25%), Positives = 86/226 (38%), Gaps = 22/226 (9%)
Query: 129 SLDWRQSKVKVLNPVESQGRCGSCWAFATTAILESQ--VALLKKTLYPLSKSQLV----- 181
S+D R ++ PV++QG GSCWAFA+ LES + + LS L
Sbjct: 1 SVDLRPLRLT---PVKNQGSRGSCWAFASAYALESAYRIKGGEDEYVDLSPQYLYICAND 57
Query: 182 ECDHGNLNCNGGNIDVAFEY-VKQYGLESQADYPYRNKENITFRCTYEKEKAKVFVQDTW 240
EC N +C+GG A V G+ + DYPY + + + A +
Sbjct: 58 ECLGINGSCDGGGPLSALLKLVALKGIPPEEDYPYGAESDGEEPKSEAALNAAKVKLKDY 117
Query: 241 VTS---GVDHMM-HLLQSGP--IGVYLNHRLIESYDGNPIRRNDWACNPHKL--DHAVAI 292
++ + L + GP G + +G + HAV I
Sbjct: 118 RRVLKNNIEDIKEALAKGGPVVAGFDVYSGFDRLKEGIIYEEIVYLLYEDGDLGGHAVVI 177
Query: 293 VGYG--EKNGILTWIVRNSWGDIGPDHGYFQIERGANACGIESYAY 336
VGY G +IV+NSWG D+GY +I + A
Sbjct: 178 VGYDDNYVEGKGAFIVKNSWGTDWGDNGYGRISYED-VYEMTFGAN 222
>gnl|CDD|239149 cd02698, Peptidase_C1A_CathepsinX, Cathepsin X; the only
papain-like lysosomal cysteine peptidase exhibiting
carboxymonopeptidase activity. It can also act as a
carboxydipeptidase, like cathepsin B, but has been shown
to preferentially cleave substrates through a
monopeptidyl carboxypeptidase pathway. The propeptide
region of cathepsin X, the shortest among papain-like
peptidases, is covalently attached to the active site
cysteine in the inactive form of the enzyme. Little is
known about the biological function of cathepsin X. Some
studies point to a role in early tumorigenesis. A more
recent study indicates that cathepsin X expression is
restricted to immune cells suggesting a role in
phagocytosis and the regulation of the immune response.
Length = 239
Score = 99.4 bits (248), Expect = 2e-24
Identities = 70/244 (28%), Positives = 111/244 (45%), Gaps = 33/244 (13%)
Query: 126 LPKSLDWRQ-SKVKVLNPVESQ---GRCGSCWAFATTAILESQVALLKKTLYP---LSKS 178
LPKS DWR + V ++P +Q CGSCWA +T+ L ++ + +K +P LS
Sbjct: 1 LPKSWDWRNVNGVNYVSPTRNQHIPQYCGSCWAHGSTSALADRINIARKGAWPSVYLSVQ 60
Query: 179 QLVECDHGNLNCNGGNIDVAFEYVKQYGLESQADYPYR------NKENITFRCTYE---- 228
+++C G +C+GG+ +EY ++G+ + PY+ N N C
Sbjct: 61 VVIDCAGGG-SCHGGDPGGVYEYAHKHGIPDETCNPYQAKDGECNPFNRCGTCNPFGECF 119
Query: 229 --KEKAKVFVQDTWVTSGVDHMM-HLLQSGPI--GVYLNHRLIESYDGNPIRRNDWACNP 283
K FV D SG D MM + GPI G+ +E+Y G +
Sbjct: 120 AIKNYTLYFVSDYGSVSGRDKMMAEIYARGPISCGIMA-TEALENYTGGVYKEYVQDPLI 178
Query: 284 HKLDHAVAIVGYG-EKNGILTWIVRNSWGDIGPDHGYFQIERGAN-----ACGIESYAYL 337
+H +++ G+G ++NG+ WIVRNSWG+ + G+F+I + IE
Sbjct: 179 ---NHIISVAGWGVDENGVEYWIVRNSWGEPWGERGWFRIVTSSYKGARYNLAIEEDCAW 235
Query: 338 ASVK 341
A
Sbjct: 236 ADPI 239
>gnl|CDD|240232 PTZ00021, PTZ00021, falcipain-2; Provisional.
Length = 489
Score = 102 bits (257), Expect = 2e-24
Identities = 96/344 (27%), Positives = 152/344 (44%), Gaps = 58/344 (16%)
Query: 35 DSIKQVDAFKTYIVKWNRTYTDDNEIKTRFEYFKQD--------GKETDEYY-GTSGSSD 85
+++ V++F +I + + Y +E++ R+ F ++ KE Y G + D
Sbjct: 161 TNLENVNSFYLFIKEHGKKYQTPDEMQQRYLSFVENLAKINAHNNKENVLYKKGMNRFGD 220
Query: 86 RSPQEI------LQRTGLRLTGKEKERLEADRERVKKFLNERKKGPLPK-SLDWRQSKVK 138
S +E L+ + GK+ R+ + +KK+ + K DWR
Sbjct: 221 LSFEEFKKKYLTLKSFDFKSNGKKSPRVINYDDVIKKY--KPKDATFDHAKYDWRLHNG- 277
Query: 139 VLNPVESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVECDHGNLNCNGGNIDVA 198
+ PV+ Q CGSCWAF+T ++ESQ A+ K L LS+ +LV+C N C GG I A
Sbjct: 278 -VTPVKDQKNCGSCWAFSTVGVVESQYAIRKNELVSLSEQELVDCSFKNNGCYGGLIPNA 336
Query: 199 FE-YVKQYGLESQADYPY----RNKENITFRCTYEKEKAKVFVQ--DTWVTSGVDHMMHL 251
FE ++ GL S+ DYPY NI RC EK K K +V + + +
Sbjct: 337 FEDMIELGGLCSEDDYPYVSDTPELCNID-RCK-EKYKIKSYVSIPEDKFKEAIRFL--- 391
Query: 252 LQSGPIGVYLNHRLIESYDGNPIRRN---DWACNPHKLDHAVAIVGYGEKNGI------- 301
GPI V + D + D C + +HAV +VGYG +
Sbjct: 392 ---GPISVSIA-----VSDDFAFYKGGIFDGECG-EEPNHAVILVGYGMEEIYNSDTKKM 442
Query: 302 ---LTWIVRNSWGDIGPDHGYFQIERGANA----CGIESYAYLA 338
+I++NSWG+ + G+ +IE N C + + AY+
Sbjct: 443 EKRYYYIIKNSWGESWGEKGFIRIETDENGLMKTCSLGTEAYVP 486
>gnl|CDD|240381 PTZ00364, PTZ00364, dipeptidyl-peptidase I precursor; Provisional.
Length = 548
Score = 72.2 bits (177), Expect = 6e-14
Identities = 53/254 (20%), Positives = 95/254 (37%), Gaps = 48/254 (18%)
Query: 125 PLPKSLDWRQ----SKVKVLNPVESQGRCGSCWAFATTAILESQVALLKKTLYP------ 174
P P + W S + P C S + A A + ++V + P
Sbjct: 204 PPPAAWSWGDVGGASFLPAAPPASPGRGCNSSYVEAALAAMMARVMVASNRTDPLGQQTF 263
Query: 175 LSKSQLVECDHGNLNCNGGNIDVAFEYVKQYGLESQADY--PYRNKENITFRCTYEKEKA 232
LS +++C C GG + ++ + +G+ + Y PY + + + C +
Sbjct: 264 LSARHVLDCSQYGQGCAGGFPEEVGKFAETFGILTTDSYYIPYDSGDGVERACKTRRPSR 323
Query: 233 KVFVQDTW--------VTSGVDHMMHLLQSGPI--GVYLN---------------HRLIE 267
+ + + VT + + + + GP+ VY N + ++
Sbjct: 324 RYYFTNYGPLGGYYGAVTDPDEIIWEIYRHGPVPASVYANSDWYNCDENSTEDVRYVSLD 383
Query: 268 SYD----GNPIRRNDWACNPHKLDHAVAIVGYGE-KNGILTWIVRNSWGDIGP--DHGYF 320
Y P+R + ++H V I+G+G +NG W+V + WG D G
Sbjct: 384 DYSTASADRPLRHYFAS----NVNHTVLIIGWGTDENGGDYWLVLDPWGSRRSWCDGGTR 439
Query: 321 QIERGANACGIESY 334
+I RG NA IES
Sbjct: 440 KIARGVNAYNIESE 453
>gnl|CDD|240244 PTZ00049, PTZ00049, cathepsin C-like protein; Provisional.
Length = 693
Score = 56.1 bits (135), Expect = 1e-08
Identities = 28/55 (50%), Positives = 36/55 (65%), Gaps = 4/55 (7%)
Query: 285 KLDHAVAIVGYGEK--NGILT--WIVRNSWGDIGPDHGYFQIERGANACGIESYA 335
K++HA+ +VG+GE+ NG L WI RNSWG GYF+I RG N GIES +
Sbjct: 617 KVNHAIVLVGWGEEEINGKLYKYWIGRNSWGKNWGKEGYFKIIRGKNFSGIESQS 671
Score = 32.6 bits (74), Expect = 0.30
Identities = 33/165 (20%), Positives = 57/165 (34%), Gaps = 22/165 (13%)
Query: 87 SPQEILQ---RTGLRLTGKEKERLEADRERVKKFLNERKKG----PLPKSLDWRQ--SKV 137
SP ++Q L E D E + + LPK+ W +
Sbjct: 335 SPVSLMQLGNTNFLAHVHGSDATNEMDLENYEDTEKAPHRELEIDELPKNFTWGDPFNNN 394
Query: 138 KVLNPVESQGRCGSCWAFATTAILESQVAL-----LKKTLYP-----LSKSQLVECDHGN 187
V +Q CGSC+ + + ++ + L K LS ++ C +
Sbjct: 395 TREYDVTNQLLCGSCYIASQMYAFKRRIEIALTKNLDKKYLNNFDDLLSIQTVLSCSFYD 454
Query: 188 LNCNGGNIDVAFEYVKQYGLESQADYPYRNKENITFRCTYEKEKA 232
CNGG + + K G+ +PY E C Y+ +++
Sbjct: 455 QGCNGGFPYLVSKMAKLQGIPLDKVFPYTATEQT---CPYQVDQS 496
>gnl|CDD|185641 PTZ00462, PTZ00462, Serine-repeat antigen protein; Provisional.
Length = 1004
Score = 49.3 bits (117), Expect = 2e-06
Identities = 54/223 (24%), Positives = 87/223 (39%), Gaps = 48/223 (21%)
Query: 143 VESQGRCGSCWAFATTAILESQVALLKKTLYPLSKSQLVEC---DHGNLNCNGGNIDVAF 199
+E QG C W FA+ LE+ + + +S + C +H + C+ G+ + F
Sbjct: 547 IEDQGNCAISWIFASKYHLETIKCMKGYEPHAISALYIANCSKGEHKD-RCDEGSNPLEF 605
Query: 200 -EYVKQYG-LESQADYPY----------------------------RNKENITFRC---- 225
+ ++ G L + ++Y Y KE +
Sbjct: 606 LQIIEDNGFLPADSNYLYNYTKVGEDCPDEEDHWMNLLDHGKILNHNKKEPNSLDGKAYR 665
Query: 226 TYEKEKAKVFVQDTWVTSGVDHMMHLLQSGPIGVYLNHRLIESYDGNPIRRNDWACNPHK 285
YE E + D ++ D +M+ G + Y+ + Y+ N + + C
Sbjct: 666 AYESEHFHDKM-DAFIKIIKDEIMN---KGSVIAYIKAENVLGYEFNGKKVQN-LCGDDT 720
Query: 286 LDHAVAIVGYG-----EKNGILTWIVRNSWGDIGPDHGYFQIE 323
DHAV IVGYG E WIVRNSWG D GYF+++
Sbjct: 721 ADHAVNIVGYGNYINDEDEKKSYWIVRNSWGKYWGDEGYFKVD 763
>gnl|CDD|227207 COG4870, COG4870, Cysteine protease [Posttranslational
modification, protein turnover, chaperones].
Length = 372
Score = 45.6 bits (108), Expect = 2e-05
Identities = 55/225 (24%), Positives = 83/225 (36%), Gaps = 39/225 (17%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILE-----------SQVALLKKTLYP 174
LP D R ++PV+ QG GSCWAFATT LE S+ + P
Sbjct: 99 LPSYFDRRDEGK--VSPVKDQGSGGSCWAFATTRSLESYLNPESAWDFSENNMKNLLGVP 156
Query: 175 LSKSQLVECDHGNLNCNGGNIDVAFEYVKQY-GLESQADYPYRNKENITFRC--TYEKEK 231
K D+ + +GGN D++ Y+ ++ G + D PY + + +
Sbjct: 157 YEK----GFDYTS--NDGGNADMSAAYLTEWSGPVYETDDPYSENSYFSPTNLPVTKHVQ 210
Query: 232 AKVFVQDTW--VTSGVDHMMHLLQSGPIGVYLNHRLIESYD-GNPIRRNDWACNPHKLDH 288
+ + +G M G + + S P D + H
Sbjct: 211 EAQIIPSRKKYLDNGNIKAM-FGFYGAVSSSMYIDATNSLGICIPYPYVD---SGENWGH 266
Query: 289 AVAIVGY----------GEKNGILTWIVRNSWGDIGPDHGYFQIE 323
AV IVGY G +I++NSWG ++GYF I
Sbjct: 267 AVLIVGYDDSFDINNFKYGPPGDGAFIIKNSWGTNWGENGYFWIS 311
>gnl|CDD|213529 TIGR00423, TIGR00423, radical SAM domain protein, CofH subfamily.
This protein family includes the CofH protein of
coenzyme F(420) biosynthesis from Methanocaldococcus
jannaschii, but appears to hit genomes more broadly
than just the subset that make coenzyme F(420), so that
narrower group is being built as a separate family
[Hypothetical proteins, Conserved].
Length = 309
Score = 36.2 bits (84), Expect = 0.020
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 7/52 (13%)
Query: 45 TYIVKWNRTYTDDNEIKTRFEYFKQDGKETDEYYGTSGSSDRSPQEILQRTG 96
T++V N +T+ K +F F+ K+ D Y S +EIL++
Sbjct: 2 TFVVNRNINFTNICVGKCKFCAFRAREKDKDAYV-------LSLEEILEKVK 46
>gnl|CDD|182167 PRK09956, PRK09956, hypothetical protein; Provisional.
Length = 308
Score = 32.8 bits (74), Expect = 0.23
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 16/82 (19%)
Query: 35 DSIKQVDAFKTYIVKWNRTYTDDNEIKTRFEYFKQDGKETDEYYGTSGSSDRSPQEILQR 94
D I VD T +V R +T+D++++T F Y Q G +T + R QEI +R
Sbjct: 187 DLIGMVDRITTLLV---RGFTNDSQLQTLFNYLLQCG-DTSRF-------TRFIQEIAER 235
Query: 95 TGLRLTGKEKERLEADRERVKK 116
+ L +KERL ER+++
Sbjct: 236 SPL-----QKERLMTIAERLRQ 252
>gnl|CDD|202517 pfam03051, Peptidase_C1_2, Peptidase C1-like family. This family
is closely related to the Peptidase_C1 family pfam00112,
containing several prokaryotic and eukaryotic
aminopeptidases and bleomycin hydrolases.
Length = 438
Score = 32.7 bits (75), Expect = 0.31
Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 286 LDHAVAIVGYGEKNG--ILTWIVRNSWGDIGPDHGYF 320
+ HA+ + G E + W V NSWGD GYF
Sbjct: 359 MTHAMVLTGVDEDDDGKPTKWKVENSWGDDSGKKGYF 395
>gnl|CDD|214853 smart00848, Inhibitor_I29, Cathepsin propeptide inhibitor domain
(I29). This domain is found at the N-terminus of some
C1 peptidases such as Cathepsin L where it acts as a
propeptide. There are also a number of proteins that
are composed solely of multiple copies of this domain
such as the peptidase inhibitor salarin. This family is
classified as I29 by MEROPS. Peptide proteinase
inhibitors can be found as single domain proteins or as
single or multiple domains within proteins; these are
referred to as either simple or compound inhibitors,
respectively. In many cases they are synthesised as
part of a larger precursor protein, either as a
prepropeptide or as an N-terminal domain associated
with an inactive peptidase or zymogen. This domain
prevents access of the substrate to the active site.
Removal of the N-terminal inhibitor domain either by
interaction with a second peptidase or by autocatalytic
cleavage activates the zymogen. Other inhibitors
interact direct with proteinases using a simple
noncovalent lock and key mechanism; while yet others
use a conformational change-based trapping mechanism
that depends on their structural and thermodynamic
properties.
Length = 57
Score = 29.5 bits (67), Expect = 0.35
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 43 FKTYIVKWNRTYTDDNEIKTRFEYFKQ 69
F+ + K ++Y+ + E RF FK+
Sbjct: 1 FEQWKKKHGKSYSSEEEEARRFAIFKE 27
>gnl|CDD|219764 pfam08246, Inhibitor_I29, Cathepsin propeptide inhibitor domain
(I29). This domain is found at the N-terminus of some
C1 peptidases such as Cathepsin L where it acts as a
propeptide. There are also a number of proteins that
are composed solely of multiple copies of this domain
such as the peptidase inhibitor salarin. This family is
classified as I29 by MEROPS.
Length = 58
Score = 29.1 bits (66), Expect = 0.43
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 43 FKTYIVKWNRTYTDDNEIKTRFEYFKQ 69
F+ + K+ ++Y + E RF+ FK+
Sbjct: 1 FEDWKKKYGKSYYSEEEELYRFQIFKE 27
>gnl|CDD|238328 cd00585, Peptidase_C1B, Peptidase C1B subfamily (MEROPS database
nomenclature); composed of eukaryotic bleomycin
hydrolases (BH) and bacterial aminopeptidases C (pepC).
The proteins of this subfamily contain a large insert
relative to the C1A peptidase (papain) subfamily. BH is
a cysteine peptidase that detoxifies bleomycin by
hydrolysis of an amide group. It acts as a
carboxypeptidase on its C-terminus to convert itself
into an aminopeptidase and peptide ligase. BH is found
in all tissues in mammals as well as in many other
eukaryotes. Bleomycin, a glycopeptide derived from the
fungus Streptomyces verticullus, is an effective
anticancer drug due to its ability to induce DNA strand
breaks. Human BH is the major cause of tumor cell
resistance to bleomycin chemotherapy, and is also
genetically linked to Alzheimer's disease. In addition
to its peptidase activity, the yeast BH (Gal6) binds DNA
and acts as a repressor in the Gal4 regulatory system.
BH forms a hexameric ring barrel structure with the
active sites imbedded in the central channel. The
bacterial homolog of BH, called pepC, is a cysteine
aminopeptidase possessing broad specificity. Although
its crystal structure has not been solved, biochemical
analysis shows that pepC also forms a hexamer. .
Length = 437
Score = 31.8 bits (73), Expect = 0.45
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
Query: 288 HAVAIVGY--GEKNGILTWIVRNSWGDIGPDHGYFQI 322
HA+ + G E + W V NSWG+ GYF +
Sbjct: 360 HAMVLTGVDLDEDGKPVKWKVENSWGEKVGKKGYFVM 396
>gnl|CDD|178652 PLN03105, TCP24, transcription factor TCP24 (TEOSINTE BRANCHED1,
CYCLOIDEA, AND PCF FAMILY 24); Provisional.
Length = 324
Score = 31.0 bits (69), Expect = 0.96
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
Query: 53 TYTDDNEIKTRFEYFKQDGKETDEYYGTSGSSDRSPQEILQRTGLRLTGKEKERLEADRE 112
+ TD + T F++ Q+ +T +SG+S+ S L RT +R +E+ R ++
Sbjct: 104 SITDLPLLNTNFDHLDQNQNQTKSA-CSSGTSESSLLS-LSRTEIRGKARERARERTAKD 161
Query: 113 RVKKFLNER 121
R K N
Sbjct: 162 RDKDLQNAH 170
>gnl|CDD|215551 PLN03050, PLN03050, pyridoxine (pyridoxamine) 5'-phosphate oxidase;
Provisional.
Length = 246
Score = 29.8 bits (67), Expect = 1.6
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 9/68 (13%)
Query: 164 QVALLKKTLYP--LSKSQLVECDHGNLNCNGGNIDVAFEYVKQYGLESQADYPYRNK--- 218
+VA +K P L+ C GN NGG+ VA ++ +G E YP ++
Sbjct: 46 EVADGEKASNPPGRHPRVLLVCGPGN---NGGDGLVAARHLAHFGYEVTVCYPKQSSKPH 102
Query: 219 -ENITFRC 225
EN+ +C
Sbjct: 103 YENLVTQC 110
>gnl|CDD|184691 PRK14464, PRK14464, ribosomal RNA large subunit methyltransferase
N; Provisional.
Length = 344
Score = 29.7 bits (67), Expect = 2.0
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 8/44 (18%)
Query: 268 SYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWIVRNSWG 311
S DG+ RR + VA+ Y + G+LT VRNS G
Sbjct: 281 SVDGDAYRRPSG-------ERIVAMARYLHRRGVLT-KVRNSAG 316
>gnl|CDD|226107 COG3579, PepC, Aminopeptidase C [Amino acid transport and
metabolism].
Length = 444
Score = 29.8 bits (67), Expect = 2.2
Identities = 13/37 (35%), Positives = 16/37 (43%), Gaps = 2/37 (5%)
Query: 286 LDHAVAIVGYGEKNG--ILTWIVRNSWGDIGPDHGYF 320
+ HA+ + G L W V NSWG GYF
Sbjct: 361 MTHAMVLTGVDLDETGNPLRWKVENSWGKDVGKKGYF 397
>gnl|CDD|223637 COG0563, Adk, Adenylate kinase and related kinases [Nucleotide
transport and metabolism].
Length = 178
Score = 29.2 bits (66), Expect = 2.5
Identities = 13/52 (25%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 50 WNRTYTDDNE--IKTRFEYFKQDGKETDEYYGTSGSSDRSPQEILQRTGLRL 99
R DDNE +K R + + + EYY + +E+L L
Sbjct: 126 GRRVREDDNEETVKKRLKVYHEQTAPLIEYYSVTIDGSGEIEEVLADILKAL 177
>gnl|CDD|235066 PRK02746, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase;
Provisional.
Length = 345
Score = 29.1 bits (66), Expect = 3.4
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 286 LDHAVAIVGYGEKNGILTW-IVRNSWGDIGPDHGY-FQIERGANACGIESYAYL 337
L A+ I GE + I+T I +++W G H Y Q E A G+E + L
Sbjct: 100 LTTAIEITLAGEFDAIVTAPIAKSAWHAAG--HHYPGQTEVLAELAGVERFGML 151
>gnl|CDD|132433 TIGR03392, FeS_syn_CsdA, cysteine desulfurase, catalytic subunit
CsdA. Members of this protein family are CsdS. This
protein, found Escherichia coli, Yersinia pestis,
Photorhabdus luminescens, and related species, and
related to SufS, works together with and physically
interacts with CsdE (a paralog of SufE). CsdA has
cysteine desulfurase activity that is enhanced by CsdE,
a sulfur acceptor protein. This gene pair, although
involved in FeS cluster biosynthesis, is not found next
to other such genes as are its paralogs from the Suf or
Isc systems [Biosynthesis of cofactors, prosthetic
groups, and carriers, Other].
Length = 398
Score = 29.0 bits (65), Expect = 3.6
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 13/73 (17%)
Query: 72 KETDEYY-GTSGSSDRSPQEILQRTGLRLTGKEKERLEADRERVKKFLNERKKGPLPKSL 130
T ++Y +SG+ RS + LT R E R++V +FLN P +++
Sbjct: 34 DATQQFYRLSSGTVHRSQH----QQAQSLT----ARYELARQQVARFLN----APDAENI 81
Query: 131 DWRQSKVKVLNPV 143
W + + +N V
Sbjct: 82 VWTRGTTESINLV 94
>gnl|CDD|182799 PRK10874, PRK10874, cysteine sulfinate desulfinase; Provisional.
Length = 401
Score = 29.2 bits (66), Expect = 3.6
Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 13/71 (18%)
Query: 74 TDEYY-GTSGSSDRSPQEILQRTGLRLTGKEKERLEADRERVKKFLNERKKGPLPKSLDW 132
T ++Y ++G+ RS RLT R EA RE+V + LN P K++ W
Sbjct: 39 TQQFYSLSAGNVHRSQF----AAAQRLT----ARYEAAREQVAQLLN----APDAKNIVW 86
Query: 133 RQSKVKVLNPV 143
+ + +N V
Sbjct: 87 TRGTTESINLV 97
>gnl|CDD|151502 pfam11056, UvsY, Recombination, repair and ssDNA binding protein
UvsY. UvsY protein enhances the rate of
single-stranded-DNA-dependant ATP hydrolysis by UvsX
protein. The enhancement of ATP hydrolysis by UvsY
protein is shown to result from the ability of UvsY
protein to increase the affinity of UvsX protein for
single-stranded DNA.
Length = 128
Score = 27.3 bits (61), Expect = 6.8
Identities = 21/70 (30%), Positives = 29/70 (41%), Gaps = 10/70 (14%)
Query: 49 KWNRTYTDDNEIKTRFEY-FKQDGKETDEYYGTSGSSDRSPQEILQRTGLRLTGKE-KER 106
KW R Y+D + K R E K+ KE YY + R+ E+ E K
Sbjct: 26 KWLRYYSDAKKEKIRLEAQKKKLLKERLLYY-----TGRADDEV---CMEIYEKSEIKTV 77
Query: 107 LEADRERVKK 116
+ AD E +K
Sbjct: 78 IAADEEVIKI 87
>gnl|CDD|221228 pfam11796, DUF3323, Protein of unknown function N-terminus
(DUF3323). Proteins in this entry are encoded within a
conserved gene four-gene neighborhood found sporadically
in a phylogenetically broad range of bacteria including:
Nocardia farcinica, Symbiobacterium thermophilum, and
Streptomyces avermitilis (Actinobacteria), Geobacillus
kaustophilus (Firmicutes), Azoarcus sp. EbN1 and
Ralstonia solanacearum (Beta-proteobacteria).
Length = 215
Score = 27.7 bits (62), Expect = 7.7
Identities = 13/61 (21%), Positives = 25/61 (40%), Gaps = 1/61 (1%)
Query: 75 DEYYGTSGSSDRSPQEILQRTGLRLTGKEKERLEADRERVKKFLNERK-KGPLPKSLDWR 133
D ++G + E L+ + ++ ER EA+ + F E + G P+ W
Sbjct: 42 DAALRSTGFAGVGLAEALEALFGPILTRKAERAEAESAWREAFFAEDRLAGDDPELRAWL 101
Query: 134 Q 134
+
Sbjct: 102 R 102
>gnl|CDD|233043 TIGR00599, rad18, DNA repair protein rad18. All proteins in this
family for which functions are known are involved in
nucleotide excision repair.This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 397
Score = 28.0 bits (62), Expect = 7.8
Identities = 11/38 (28%), Positives = 18/38 (47%)
Query: 126 LPKSLDWRQSKVKVLNPVESQGRCGSCWAFATTAILES 163
+ S DW + + L P+++ RC C F +L S
Sbjct: 6 ITDSSDWLTTPIPSLYPLDTSLRCHICKDFFDVPVLTS 43
>gnl|CDD|239583 cd03506, Delta6-FADS-like, The Delta6 Fatty Acid Desaturase
(Delta6-FADS)-like CD includes the integral-membrane
enzymes: delta-4, delta-5, delta-6, delta-8,
delta-8-sphingolipid, and delta-11 desaturases found in
vertebrates, higher plants, fungi, and bacteria. These
desaturases are required for the synthesis of highly
unsaturated fatty acids (HUFAs), which are mainly
esterified into phospholipids and contribute to
maintaining membrane fluidity. While HUFAs may be
required for cold tolerance in bacteria, plants and
fish, the primary role of HUFAs in mammals is cell
signaling. These enzymes are described as front-end
desaturases because they introduce a double bond between
the pre-exiting double bond and the carboxyl (front) end
of the fatty acid. Various substrates are involved, with
both acyl-coenzyme A (CoA) and acyl-lipid desaturases
present in this CD. Acyl-lipid desaturases are localized
in the membranes of cyanobacterial thylakoid, plant
endoplasmic reticulum (ER), and plastid; and acyl-CoA
desaturases are present in ER membrane. ER-bound plant
acyl-lipid desaturases and acyl-CoA desaturases require
cytochrome b5 as an electron donor. Most of the
eukaryotic desaturase domains have an adjacent
N-terminal cytochrome b5-like domain. This domain family
has extensive hydrophobic regions that would be capable
of spanning the membrane bilayer at least twice.
Comparison of sequences also reveals the existence of
three regions of conserved histidine cluster motifs that
contain the residues: HXXXH, HXX(X)HH, and Q/HXXHH.
These histidine residues are reported to be
catalytically essential and proposed to be the ligands
for the iron atoms contained within the homolog,
stearoyl CoA desaturase.
Length = 204
Score = 27.6 bits (62), Expect = 8.8
Identities = 18/80 (22%), Positives = 28/80 (35%), Gaps = 21/80 (26%)
Query: 248 MMHLLQSGPIGVY--LNHRLIESYDGNPIRRNDWACNPHKLDHAVAIVGYGEKNGILTWI 305
++ L + V LNH + D +NDW ++ I G + L W+
Sbjct: 114 VVQLAGGLWLAVVFQLNHFGMPVEDPPGESKNDWLE--RQVLTTRNITG----SPFLDWL 167
Query: 306 VRNSWGDIGPDHGY--FQIE 323
HG +QIE
Sbjct: 168 -----------HGGLNYQIE 176
>gnl|CDD|227934 COG5647, COG5647, Cullin, a subunit of E3 ubiquitin ligase
[Posttranslational modification, protein turnover,
chaperones].
Length = 773
Score = 27.8 bits (62), Expect = 9.0
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 16/78 (20%)
Query: 61 KTRFEYFKQDG-----KETDEYYGTSGSSD---RSPQEILQRTGLRLTGKEKERLEADRE 112
K Y+K +ET E+Y S S E L+ K + LE + E
Sbjct: 212 KENLSYYKSVFEPIFLEETWEFYEMESSEVIELLSVTEYLE--------KAHKILEREEE 263
Query: 113 RVKKFLNERKKGPLPKSL 130
V+ +L K PL + L
Sbjct: 264 LVEIYLKVSTKKPLLEVL 281
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 28.0 bits (62), Expect = 9.2
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 9/94 (9%)
Query: 35 DSIK-QVDAFKTYIVKWNRTYTDDNEIKTRFEYFKQDGKETDEYYGTSGSSDRSPQEILQ 93
DS K ++DA K I K N + NE FE K+ KE E QE +
Sbjct: 388 DSTKDEIDAIKDLIKKANAQVVNHNERIKNFEKQKKSSKEQLE-KFLVNEFKSDVQEYNK 446
Query: 94 RTGLRLTGKEKERLEA----DRERVKKFLNERKK 123
GL K+ LE ++E VKK NE K+
Sbjct: 447 YCGLE---KKINNLEKEIKNNQEEVKKLSNEIKE 477
>gnl|CDD|220177 pfam09318, DUF1975, Domain of unknown function (DUF1975). Members
of this family of functionally uncharacterized domains
are predominantly found in the N-terminal region of
various prokaryotic alpha-glucosyltransferases.
Length = 203
Score = 27.3 bits (61), Expect = 9.6
Identities = 19/80 (23%), Positives = 30/80 (37%), Gaps = 2/80 (2%)
Query: 6 CDHQETNTEQVTYNVNTDSAIYV-WRDLAYDSIKQVDAFKTYIVKWNRTYTDDNEIKTRF 64
+ + + Y+ V +RD ++ V+ F R Y D +
Sbjct: 90 LEFEYNPNDIRIYDQGGQLIARVYYRDETKGTVDYVEYFDPNGRLVRRDYYDYRGFLSST 149
Query: 65 EYFKQDGKE-TDEYYGTSGS 83
+YF DGK +EYY GS
Sbjct: 150 QYFDDDGKVILEEYYNPDGS 169
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 27.8 bits (62), Expect = 9.9
Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 8/93 (8%)
Query: 56 DDNEIKTRFEYFKQDGKETDEYYGTSGSSDRSPQEILQRTGLRLTGKEKERLEADRERVK 115
D+ E++ D + + + +E ++ +EK RL
Sbjct: 14 DEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKARL-------- 65
Query: 116 KFLNERKKGPLPKSLDWRQSKVKVLNPVESQGR 148
K L ++KK + K L+ + + + + +GR
Sbjct: 66 KELKKQKKQEIQKILEQQNAAIDADMNNKGKGR 98
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.316 0.133 0.410
Gapped
Lambda K H
0.267 0.0764 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,942,356
Number of extensions: 1591761
Number of successful extensions: 1612
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1576
Number of HSP's successfully gapped: 57
Length of query: 341
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 243
Effective length of database: 6,590,910
Effective search space: 1601591130
Effective search space used: 1601591130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (26.4 bits)