BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy4965
(179 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Q2G|A Chain A, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
pdb|2Q2G|B Chain B, Crystal Structure Of Dimerization Domain Of Hsp40 From
Cryptosporidium Parvum, Cgd2_1800
Length = 180
Score = 78.6 bits (192), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 42/108 (38%), Positives = 61/108 (56%), Gaps = 2/108 (1%)
Query: 1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
P PGD++++++ K H RF R +L+ TI L AL GFT + LD+R L I P
Sbjct: 69 PGTSPGDLVLIIQTKTHPRFTRDDCHLIXKVTIPLVRALTGFTCPVTTLDNRNLQI--PI 126
Query: 61 GEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKL 108
E++ P+ K + EG PI P +KG L ++FD+ FP+S KL
Sbjct: 127 KEIVNPKTRKIVPNEGXPIKNQPGQKGDLILEFDICFPKSLTPEQKKL 174
>pdb|1NLT|A Chain A, The Crystal Structure Of Hsp40 Ydj1
Length = 248
Score = 77.4 bits (189), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/113 (40%), Positives = 66/113 (58%), Gaps = 3/113 (2%)
Query: 1 PDQEPGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPP 60
PD PGDV+ ++ ++PH F+R G +LV I L A+ G ++H+ L + P
Sbjct: 138 PDVIPGDVVFIVSERPHKSFKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVP 197
Query: 61 GEVIKPEDIKGIVGEGMPIYK-NPYEKGTLYIKFDVQFPESYFNNDAKLKELE 112
GEVI P K I G+GMPI K Y G L IKF ++ PE++F ++ LK+LE
Sbjct: 198 GEVIAPGMRKVIEGKGMPIPKYGGY--GNLIIKFTIKDPENHFTSEENLKKLE 248
>pdb|3AGZ|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGZ|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 190
Score = 75.9 bits (185), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 5 PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVI 64
P D++ VL+ KPH+ F+R G +++ I+L EALCG T + LD R + + +VI
Sbjct: 82 PADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVF--KDVI 139
Query: 65 KPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 99
+P + + GEG+P+ K P ++G L I+F+V FPE
Sbjct: 140 RPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPE 174
>pdb|3AGX|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGX|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain
pdb|3AGY|A Chain A, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
pdb|3AGY|B Chain B, Crystal Structure Of Human Hsp40 Hdj1 Peptide-Binding
Domain Complexed With A C-Terminal Peptide Of Hsp70
Length = 181
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 5 PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVI 64
P D++ VL+ KPH+ F+R G +++ I+L EALCG T + LD R + + +VI
Sbjct: 73 PADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVF--KDVI 130
Query: 65 KPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 99
+P + + GEG+P+ K P ++G L I+F+V FPE
Sbjct: 131 RPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPE 165
>pdb|2QLD|A Chain A, Human Hsp40 Hdj1
Length = 183
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/95 (40%), Positives = 60/95 (63%), Gaps = 2/95 (2%)
Query: 5 PGDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVI 64
P D++ VL+ KPH+ F+R G +++ I+L EALCG T + LD R + + +VI
Sbjct: 75 PADIVFVLKDKPHNIFKRDGSDVIYPARISLREALCGCTVNVPTLDGRTIPVVF--KDVI 132
Query: 65 KPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPE 99
+P + + GEG+P+ K P ++G L I+F+V FPE
Sbjct: 133 RPGMRRKVPGEGLPLPKTPEKRGDLIIEFEVIFPE 167
>pdb|1XAO|A Chain A, Hsp40-Ydj1 Dimerization Domain
pdb|1XAO|B Chain B, Hsp40-Ydj1 Dimerization Domain
Length = 121
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 42/100 (42%), Positives = 58/100 (58%), Gaps = 3/100 (3%)
Query: 20 FQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDIKGIVGEGMPI 79
F+R G +LV I L A+ G ++H+ L + PGEVI P K I G+GMPI
Sbjct: 2 FKRDGDDLVYEAEIDLLTAIAGGEFALEHVSGDWLKVGIVPGEVIAPGMRKVIEGKGMPI 61
Query: 80 YK-NPYEKGTLYIKFDVQFPESYFNNDAKLKELEALLSPR 118
K Y G L IKF ++FPE++F ++ LK+LE +L PR
Sbjct: 62 PKYGGY--GNLIIKFTIKFPENHFTSEENLKKLEEILPPR 99
>pdb|1C3G|A Chain A, S. Cerevisiae Heat Shock Protein 40 Sis1
Length = 170
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Query: 10 IVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDI 69
V+++K H F+R G +L+ T ++ E+L GF+K I+ +D R L ++ + ++P
Sbjct: 72 FVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRV--QPVQPSQT 129
Query: 70 KGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELE 112
G+GMP KNP ++G L +K+ V +P S NDA+ + ++
Sbjct: 130 STYPGQGMPTPKNPSQRGNLIVKYKVDYPISL--NDAQKRAID 170
>pdb|2B26|A Chain A, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|B Chain B, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
pdb|2B26|C Chain C, The Crystal Structure Of The Protein Complex Of Yeast
Hsp40 Sis1 And Hsp70 Ssa1
Length = 173
Score = 66.2 bits (160), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 61/103 (59%), Gaps = 4/103 (3%)
Query: 10 IVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPGEVIKPEDI 69
V+++K H F+R G +L+ T ++ E+L GF+K I+ +D R L ++ + ++P
Sbjct: 72 FVIQEKSHPNFKRDGDDLIYTLPLSFKESLLGFSKTIQTIDGRTLPLSRV--QPVQPSQT 129
Query: 70 KGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLKELE 112
G+GMP KNP ++G L +K+ V +P S NDA+ + ++
Sbjct: 130 STYPGQGMPTPKNPSQRGNLIVKYKVDYPISL--NDAQKRAID 170
>pdb|3LZ8|A Chain A, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution.
pdb|3LZ8|B Chain B, Structure Of A Putative Chaperone Dnaj From Klebsiella
Pneumoniae Subsp. Pneumoniae Mgh 78578 At 2.9 A
Resolution
Length = 329
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 6 GDVIIVLEQKPHDRFQRQGINLVTTETITLTEALCGFTKVIKHLDDRQLLITHPPG 61
GD+ +V+ PH F G NL + EA G + L + +L+T PPG
Sbjct: 213 GDLWLVIHIAPHPLFDIVGHNLEIVLPLAPWEAALGAKVTVPTLKE-SILLTVPPG 267
>pdb|3C8Z|A Chain A, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
pdb|3C8Z|B Chain B, The 1.6 A Crystal Structure Of Mshc: The Rate Limiting
Enzyme In The Mycothiol Biosynthetic Pathway
Length = 414
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 50 DDRQLLITHPPGEVIKPEDIKGIVGEGMPIYKNPYEKGTLYIKFDVQFPESYFNNDAKLK 109
+D L PP + + D + E + + + G YI D ++P+ YF DA +
Sbjct: 115 EDMAALRVLPPHDYVAATDA---IAEVVEMVEKLLASGAAYIVEDAEYPDVYFRADATAQ 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.138 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,218,111
Number of Sequences: 62578
Number of extensions: 198164
Number of successful extensions: 349
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 332
Number of HSP's gapped (non-prelim): 13
length of query: 179
length of database: 14,973,337
effective HSP length: 93
effective length of query: 86
effective length of database: 9,153,583
effective search space: 787208138
effective search space used: 787208138
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 48 (23.1 bits)